AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098750 MtrunA17_Chr1g0151501 90.467 986 4 6 1 896 1 986 0.0 1805
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098750 AT2G26080.1 78.513 982 118 10 1 896 1 975 0.0 1519
Msa0098750 AT4G33010.1 78.667 975 123 10 1 896 1 969 0.0 1517
Msa0098750 AT4G33010.2 78.667 975 123 10 1 896 1 969 0.0 1516

Find 286 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGTGCAATAGCTTTA+AGG 0.075284 1_3:+4775637 None:intergenic
CCAGGAAATGTTCGACAATT+TGG 0.125124 1_3:-4774035 Msa0098750:intron
TATTGACTTAAGAGGCTTTA+AGG 0.138981 1_3:-4772262 Msa0098750:intron
GGACAACTTATCTGCATTTA+TGG 0.170561 1_3:-4773398 Msa0098750:intron
AGTGATCTTGAGGAATATTT+TGG 0.174246 1_3:-4776860 Msa0098750:CDS
ACTACTAATACAAATTTAAT+TGG 0.244487 1_3:+4770821 None:intergenic
GGAATTGCATTCTGAAATTC+TGG 0.261041 1_3:+4774785 None:intergenic
TGGTCCTCATGCTGCTTTCT+TGG 0.273039 1_3:-4776308 Msa0098750:CDS
CAATTCCTTCTGGATTAGTT+AGG 0.290266 1_3:-4774769 Msa0098750:CDS
GGCCCTGGCATGGGTCCTAT+TGG 0.290920 1_3:-4772865 Msa0098750:CDS
ACACATATATTGCATAATTA+TGG 0.292649 1_3:-4770636 Msa0098750:three_prime_UTR
CTTGCTGGTGTATTTGCTTT+GGG 0.294585 1_3:-4775606 Msa0098750:CDS
ACTGGTGGTTTAACAATGTT+GGG 0.294604 1_3:-4770413 Msa0098750:three_prime_UTR
TAGTATCTCAGCTGCACCTT+GGG 0.301015 1_3:-4772556 Msa0098750:CDS
TTCTGGTTCTGTTTCTGTTT+CGG 0.301131 1_3:-4770766 Msa0098750:three_prime_UTR
TTTCAGAATGCAATTCCTTC+TGG 0.303780 1_3:-4774779 Msa0098750:CDS
GTGTTTCTTAGTTTATTATA+TGG 0.303915 1_3:-4770390 Msa0098750:three_prime_UTR
CAGGAAATGTTCGACAATTT+GGG 0.304504 1_3:-4774034 Msa0098750:CDS
AAGGATATTGATTACAAATC+TGG 0.307783 1_3:-4776541 Msa0098750:CDS
TATCTTGATGAAGATGAAAA+TGG 0.308710 1_3:+4777294 None:intergenic
GTGTACCCTCGTGGAGGTTC+TGG 0.314287 1_3:-4770783 Msa0098750:three_prime_UTR
GGTGTTAGTGTTGATTCTTC+TGG 0.315029 1_3:-4776241 Msa0098750:CDS
CGAAAAGCTAATAAGGTTAC+TGG 0.326602 1_3:-4770431 Msa0098750:three_prime_UTR
TGATGAAACAACTACATTAG+AGG 0.327719 1_3:-4775326 Msa0098750:CDS
TGGTACTGAAGGTGAGGTTT+TGG 0.332419 1_3:-4776488 Msa0098750:intron
TCTTGCTGGTGTATTTGCTT+TGG 0.338848 1_3:-4775607 Msa0098750:CDS
TGGAGGAGGTGGCCCTGGCA+TGG 0.339348 1_3:-4772875 Msa0098750:CDS
ATCTTCCTAACTGGAGAATA+GGG 0.343225 1_3:+4770356 Msa0098760:intron
GCAATAGCTTTAAGGCCTTC+AGG 0.343971 1_3:+4775645 None:intergenic
TTTCAAATCTTTCATTGGTA+TGG 0.346816 1_3:-4776908 Msa0098750:CDS
CGTGGTGTTGGTGGATTTCA+CGG 0.347506 1_3:-4777198 Msa0098750:intron
CAACCAAATGCTGGTGCTGC+TGG 0.352688 1_3:-4773968 Msa0098750:CDS
AATACATACGTGTTAAAGAT+AGG 0.353105 1_3:+4774725 None:intergenic
AGACGCTTCGCAACATCTTC+AGG 0.353636 1_3:+4772132 None:intergenic
CATCTTCCTAACTGGAGAAT+AGG 0.355207 1_3:+4770355 Msa0098760:intron
TCTTCAACAGCCTGTGATGC+TGG 0.355526 1_3:+4771237 None:intergenic
GGAGGAGGTGGCCCTGGCAT+GGG 0.356958 1_3:-4772874 Msa0098750:CDS
CAACATAGCATCTTCCTAAC+TGG 0.358807 1_3:+4770347 Msa0098760:intron
AATGTGTGGAGTGGAGTGTC+CGG 0.362244 1_3:-4770513 Msa0098750:three_prime_UTR
AAGATAGGGTGTGTCAAATA+AGG 0.363130 1_3:+4774740 None:intergenic
CGGTGGACATTACTGCCTCT+TGG 0.363403 1_3:-4770746 Msa0098750:three_prime_UTR
TTGAAGCCTCCTGGTGAGTT+TGG 0.363911 1_3:-4776385 Msa0098750:intron
GGTTGTGGTGAAAGATCTTA+AGG 0.369312 1_3:-4776560 Msa0098750:CDS
ATCAATTTGAGAGTTGTAGA+TGG 0.372080 1_3:-4775474 Msa0098750:CDS
GATGATTTCTTGACCCCATA+TGG 0.372501 1_3:+4770102 None:intergenic
TGTTCACAACAATGTTCTTA+AGG 0.378676 1_3:-4771832 Msa0098750:intron
CATGTAGTTTGCATTCAAAA+TGG 0.382287 1_3:+4772452 None:intergenic
ACTTGGAACAGTGGAAGTTC+AGG 0.382456 1_3:-4775574 Msa0098750:CDS
CAAAGGGTTCATGGTCTTGC+TGG 0.387030 1_3:-4775621 Msa0098750:CDS
AGTTGTTGAGATACATTCAT+AGG 0.387713 1_3:-4774599 Msa0098750:CDS
ATGCAAACATTGGAGGTGTT+TGG 0.388417 1_3:+4770134 Msa0098760:CDS
TTCGGTGTTCCAATGGGTTA+TGG 0.388634 1_3:-4776331 Msa0098750:CDS
CTGGGAGAAGGGTGCAGATC+AGG 0.394336 1_3:+4771256 None:intergenic
AAGTGTTTCTTTACACCAAT+AGG 0.394998 1_3:+4772850 None:intergenic
TGCAAGATCATCCATGATAA+TGG 0.396584 1_3:-4773212 Msa0098750:CDS
AGCAGCATCTGCAATTGCTT+TGG 0.397575 1_3:+4775509 None:intergenic
AGCTGATGGATTTGAGCTTA+AGG 0.398536 1_3:-4776581 Msa0098750:CDS
CTCATGGACTATGGATTTCA+TGG 0.402965 1_3:-4772111 Msa0098750:CDS
GCGAAGCGTCTCATGGACTA+TGG 0.405977 1_3:-4772120 Msa0098750:CDS
GCTATTGCACAAAGGGTTCA+TGG 0.406768 1_3:-4775630 Msa0098750:CDS
TCTCCAGCAGCACCAGCATT+TGG 0.407510 1_3:+4773965 None:intergenic
GCAGGGACTGTATGATGAAT+AGG 0.412261 1_3:+4771142 None:intergenic
GAGTTCATTATTGACTTAAG+AGG 0.413841 1_3:-4772270 Msa0098750:CDS
ACAGTGGAAGTTCAGGATCT+TGG 0.413841 1_3:-4775567 Msa0098750:CDS
TCCCTTGGCATCAGTTCCTA+TGG 0.414977 1_3:+4773465 None:intergenic
TACTGGTGGTTTAACAATGT+TGG 0.415341 1_3:-4770414 Msa0098750:three_prime_UTR
CTTCTGGTGTAGCTGAGTTA+TGG 0.417012 1_3:+4777103 None:intergenic
GGCTCATGCTAATGAGGTTA+AGG 0.417957 1_3:-4776443 Msa0098750:CDS
CTTGGTTGGATGGTTGAGTT+GGG 0.419334 1_3:-4770728 Msa0098750:three_prime_UTR
TGCATTCAGCTTCATTGTAC+AGG 0.419465 1_3:+4774527 None:intergenic
CACCCTTCTCCCAGCATCAC+AGG 0.420165 1_3:-4771247 Msa0098750:three_prime_UTR
TGACGCGTCAGTGAGTCCTT+TGG 0.420539 1_3:+4772482 None:intergenic
AGCTGATATTGTTGTTGGTT+CGG 0.421591 1_3:-4776362 Msa0098750:CDS
TAATGAGGTTAAGGTGGTTA+TGG 0.422658 1_3:-4776434 Msa0098750:CDS
GGTGTTCTTGTTCAGTATCC+TGG 0.423926 1_3:-4776508 Msa0098750:intron
GTTGGTTCGGCTCAGAGATT+CGG 0.424014 1_3:-4776349 Msa0098750:CDS
CTAACACCAATGATTCTTCC+AGG 0.426159 1_3:+4776256 None:intergenic
CCTCATGGAGGAGGTGGCCC+TGG 0.427915 1_3:-4772880 Msa0098750:CDS
TGCATTCCTCATGGAGGAGG+TGG 0.428528 1_3:-4772886 Msa0098750:CDS
TTCTCTTTGCAACCAAATGC+TGG 0.431435 1_3:-4773977 Msa0098750:CDS
TGCATAAACTAGAGCCATAT+GGG 0.432008 1_3:-4770116 Msa0098750:three_prime_UTR
TGAGGATGGCTATGCAAACT+AGG 0.432946 1_3:-4776207 Msa0098750:CDS
GCAAAAGGGCAGTGGGTTTG+TGG 0.434429 1_3:-4770684 Msa0098750:three_prime_UTR
TTTCCATTGTAGAATACTGC+TGG 0.436453 1_3:-4772162 Msa0098750:intron
GGTTATGGCAAGTGATCTAT+TGG 0.438506 1_3:-4776419 Msa0098750:CDS
CTTACAAGCCCAGGTTGGAT+TGG 0.439044 1_3:-4772946 Msa0098750:CDS
TATGTGTAATAATATTCAAA+AGG 0.439913 1_3:-4776671 Msa0098750:CDS
GGTCTTCTTCCTAATGCAAA+AGG 0.441068 1_3:-4770699 Msa0098750:three_prime_UTR
TGTGTATCGAAAAGCTAATA+AGG 0.441266 1_3:-4770438 Msa0098750:three_prime_UTR
ATTACTGCCTCTTGGTTGGA+TGG 0.441618 1_3:-4770738 Msa0098750:three_prime_UTR
GCTATGTATGTGTAAGAGAT+AGG 0.441736 1_3:+4772516 None:intergenic
CCTTAAAGCTATTGCACAAA+GGG 0.443002 1_3:-4775637 Msa0098750:CDS
TCATAAACACCGTGAGTTGA+AGG 0.444064 1_3:+4773254 None:intergenic
TTCAAATCTTTCATTGGTAT+GGG 0.444511 1_3:-4776907 Msa0098750:CDS
TTTGGAGCTGATATTGTTGT+TGG 0.444709 1_3:-4776367 Msa0098750:CDS
TCAACAACTCGTGCTCAGTT+TGG 0.447601 1_3:+4774613 None:intergenic
TCTTGGTTGGATGGTTGAGT+TGG 0.447806 1_3:-4770729 Msa0098750:three_prime_UTR
TTGACTCCACGGAAAAGAAC+CGG 0.448446 1_3:+4772309 None:intergenic
TTCAATGTTAATGTTTCCCT+TGG 0.448994 1_3:+4773450 None:intergenic
GCTTTGGGACTAAAGAAACT+TGG 0.456980 1_3:-4775591 Msa0098750:CDS
TGGATTATCATCATTATCAT+AGG 0.458084 1_3:+4771098 None:intergenic
CTTCTGGAAAGCCAGCTTTG+AGG 0.459054 1_3:-4776225 Msa0098750:CDS
CTACTTCACAAGAGTATAAG+AGG 0.460885 1_3:-4776285 Msa0098750:CDS
AATTCCTTCTGGATTAGTTA+GGG 0.462600 1_3:-4774768 Msa0098750:CDS
TTGACTGTGTTGAAGCCTCC+TGG 0.467785 1_3:-4776394 Msa0098750:intron
GGTTATTCGTGCATATCATA+TGG 0.467862 1_3:-4773927 Msa0098750:intron
TCAGAGATTCGGTGTTCCAA+TGG 0.468626 1_3:-4776338 Msa0098750:CDS
CTTAGTTTATTATATGGCTA+TGG 0.468807 1_3:-4770384 Msa0098750:three_prime_UTR
CGTTGCAGGCTGAGTTGGAT+AGG 0.470899 1_3:-4771917 Msa0098750:intron
AACATCGTTGCAGGCTGAGT+TGG 0.474673 1_3:-4771922 Msa0098750:intron
GATGGTTGAGTTGGGTGTGG+TGG 0.476250 1_3:-4770720 Msa0098750:three_prime_UTR
TGCGAAATCTCAGCTTGATA+AGG 0.476443 1_3:+4776808 None:intergenic
TTCCTAATGCAAAAGGGCAG+TGG 0.480664 1_3:-4770692 Msa0098750:three_prime_UTR
TTGGATGGTTGAGTTGGGTG+TGG 0.480761 1_3:-4770723 Msa0098750:three_prime_UTR
TTATGGTGAGTTTATTAAGA+AGG 0.480802 1_3:-4776464 Msa0098750:CDS
GCAGCATATCCGTAGGGATA+AGG 0.480846 1_3:-4776182 Msa0098750:CDS
AAGCAAAAGTTAATAGCTGC+AGG 0.481716 1_3:+4771124 None:intergenic
ATGTGTGGAGTGGAGTGTCC+GGG 0.484292 1_3:-4770512 Msa0098750:three_prime_UTR
TTGCATAAACTAGAGCCATA+TGG 0.485872 1_3:-4770117 Msa0098750:three_prime_UTR
ATCCAGTGATGGTACACAAC+AGG 0.487296 1_3:+4774008 None:intergenic
AGTAGCCCTATTCTCCAGTT+AGG 0.487780 1_3:-4770361 Msa0098750:three_prime_UTR
GAAATTGCTGAGATTGAGAA+AGG 0.487851 1_3:-4771864 Msa0098750:CDS
CATAGCGGCACTAGCAGGAT+TGG 0.490500 1_3:+4773507 None:intergenic
GACCTGTTGTGTACCATCAC+TGG 0.491033 1_3:-4774010 Msa0098750:CDS
TTAGGCACTGCTTGCAAACA+TGG 0.491272 1_3:-4775694 Msa0098750:intron
TGGCACCATCCATGTATACT+TGG 0.491358 1_3:+4773186 None:intergenic
CTAGTTTATGCAAACATTGG+AGG 0.491589 1_3:+4770127 Msa0098760:CDS
TAATGCAGACATTGCGGTGG+TGG 0.494171 1_3:+4773551 None:intergenic
TAAGAAGGCTCATGCTAATG+AGG 0.496688 1_3:-4776449 Msa0098750:CDS
ACATCTGCTCCAATCCAACC+TGG 0.497413 1_3:+4772937 None:intergenic
TAGCAACATTTGCACTGCTC+AGG 0.497798 1_3:-4776155 Msa0098750:intron
GGCTCAATCATGAGTGTACC+AGG 0.499797 1_3:+4772066 None:intergenic
TGCATAGCCATCCTCAAAGC+TGG 0.501347 1_3:+4776214 None:intergenic
CAGAGATTCGGTGTTCCAAT+GGG 0.501601 1_3:-4776337 Msa0098750:CDS
GGTGCTGCTGGAGAATATGC+TGG 0.503788 1_3:-4773956 Msa0098750:CDS
ACCAGTGAGATCAGTAATCA+AGG 0.506686 1_3:+4776753 None:intergenic
CGTCTTGCGAATGTATCACT+TGG 0.506897 1_3:+4777126 None:intergenic
ACTCACGGTGTTTATGAAGA+AGG 0.509508 1_3:-4773248 Msa0098750:CDS
TTTAAAGGTTGAGCTTCACT+TGG 0.511533 1_3:-4770572 Msa0098750:three_prime_UTR
TAACATTGAAGAGTTGAAGA+AGG 0.514343 1_3:-4773437 Msa0098750:CDS
TGGATTTGAGCTTAAGGTTG+TGG 0.514464 1_3:-4776575 Msa0098750:CDS
ATACTTGGCCTCCATTATCA+TGG 0.514735 1_3:+4773201 None:intergenic
TGGTTCTGTTTCTGTTTCGG+TGG 0.515318 1_3:-4770763 Msa0098750:three_prime_UTR
ACACCAATAGGACCCATGCC+AGG 0.516635 1_3:+4772862 None:intergenic
AGATGTTGCGAAGCGTCTCA+TGG 0.516911 1_3:-4772127 Msa0098750:CDS
AAAATATTCCTCAAGATCAC+TGG 0.518936 1_3:+4776862 None:intergenic
GGACATTACTGCCTCTTGGT+TGG 0.519008 1_3:-4770742 Msa0098750:three_prime_UTR
GCTCTAGTTTATGCAAACAT+TGG 0.520665 1_3:+4770124 Msa0098760:CDS
TACAAATCTGGTGATGTTTG+TGG 0.522663 1_3:-4776529 Msa0098750:CDS
TCCTAATGCAAAAGGGCAGT+GGG 0.523326 1_3:-4770691 Msa0098750:three_prime_UTR
TAATGGAGGCCAAGTATACA+TGG 0.524175 1_3:-4773195 Msa0098750:CDS
CCTGAAAATGCTCAACCACT+TGG 0.525234 1_3:-4772579 Msa0098750:CDS
ATGTGTAATAATATTCAAAA+GGG 0.527153 1_3:-4776670 Msa0098750:CDS
ATGATGCCTGGAAGAATCAT+TGG 0.527525 1_3:-4776262 Msa0098750:CDS
GAGTCCTTTGGAACCCATCA+TGG 0.527774 1_3:+4772494 None:intergenic
TAATTATGCAATATATGTGT+TGG 0.529153 1_3:+4770639 Msa0098760:intron
AGCATTTGGTTGCAAAGAGA+AGG 0.532317 1_3:+4773979 None:intergenic
TGCTAGTAGCCTTATCCCTA+CGG 0.536845 1_3:+4776173 None:intergenic
GTAGTATCTCAGCTGCACCT+TGG 0.538239 1_3:-4772557 Msa0098750:CDS
TTTGTGATTTGGGGATTGCA+AGG 0.539548 1_3:-4770541 Msa0098750:three_prime_UTR
ATATGTAAGACGAGAGCTGA+TGG 0.539723 1_3:-4776595 Msa0098750:CDS
TGGCTTCTTTGATACTGTGA+AGG 0.540912 1_3:-4775547 Msa0098750:CDS
GGCACAGGCCATGACATTGT+TGG 0.541827 1_3:+4772087 None:intergenic
GCTATAATGAAGGTGCCAAC+TGG 0.541859 1_3:-4772615 Msa0098750:intron
CTTCAACAGCCTGTGATGCT+GGG 0.543837 1_3:+4771238 None:intergenic
CACATGTTCCGTTGACTCCA+CGG 0.545787 1_3:+4772298 None:intergenic
CCACACATAGCGGCACTAGC+AGG 0.547612 1_3:+4773502 None:intergenic
ATACATACGTGTTAAAGATA+GGG 0.549745 1_3:+4774726 None:intergenic
AAACATAAATAAAGAATCAC+GGG 0.550724 1_3:+4770077 None:intergenic
TGCCACAGTATGATCCCACT+TGG 0.551785 1_3:-4774552 Msa0098750:CDS
GCTGTATATCATGGACCTGA+AGG 0.553442 1_3:-4775660 Msa0098750:CDS
TTCCATTGTAGAATACTGCT+GGG 0.556802 1_3:-4772161 Msa0098750:intron
GCCATGTATGCTGTATATCA+TGG 0.558355 1_3:-4775669 Msa0098750:CDS
TTAACAAACTCCACCACCCC+CGG 0.559418 1_3:+4770494 Msa0098760:intron
CAGCCTGTGATGCTGGGAGA+AGG 0.559918 1_3:+4771244 None:intergenic
AATGTTTCACGTGGTGTTGG+TGG 0.560420 1_3:-4777207 Msa0098750:CDS
GCCTACTGAAAGTGAAAGCA+AGG 0.560958 1_3:-4772046 Msa0098750:intron
GAGTATAAGAGGATGATGCC+TGG 0.561735 1_3:-4776274 Msa0098750:CDS
GTCTTCTTCCTAATGCAAAA+GGG 0.564098 1_3:-4770698 Msa0098750:three_prime_UTR
GATGAAGATGAAAATGGAAG+AGG 0.565467 1_3:+4777300 None:intergenic
CACCATAGGAACTGATGCCA+AGG 0.565979 1_3:-4773467 Msa0098750:CDS
ATGATAACCATGGTGGGGAA+TGG 0.567284 1_3:+4770158 Msa0098760:CDS
GGACGTGTTGATAATGTGTA+TGG 0.567764 1_3:-4771288 Msa0098750:CDS
TTGGTACCATGTGCTGAGAC+TGG 0.568887 1_3:+4773526 None:intergenic
CAGGTGGGACTTACAAGCCC+AGG 0.570584 1_3:-4772955 Msa0098750:CDS
AAAACATAAATAAAGAATCA+CGG 0.571310 1_3:+4770076 None:intergenic
TGGAAAGCCAGCTTTGAGGA+TGG 0.577107 1_3:-4776221 Msa0098750:CDS
AAACTACATGGCGAAACGAT+TGG 0.577356 1_3:-4772439 Msa0098750:CDS
GAGGATGGCTATGCAAACTA+GGG 0.578136 1_3:-4776206 Msa0098750:CDS
ACAATGTCATGGCCTGTGCC+TGG 0.578944 1_3:-4772084 Msa0098750:CDS
TCCATGATATACAGCATACA+TGG 0.580171 1_3:+4775668 None:intergenic
GGAATGAAAATTGTCACCAT+AGG 0.580449 1_3:-4773481 Msa0098750:CDS
GCCTTAAAGCTATTGCACAA+AGG 0.580972 1_3:-4775638 Msa0098750:CDS
ACTACTTACCACAGGGTGTG+AGG 0.582382 1_3:+4772813 None:intergenic
AGCAATGTTTCACGTGGTGT+TGG 0.583378 1_3:-4777210 Msa0098750:CDS
GGGGCAGGAATTCCACCAGT+TGG 0.584936 1_3:+4772600 None:intergenic
ACTTCTGTAGAGTTATTACC+CGG 0.587226 1_3:-4772328 Msa0098750:intron
ATGTTCCACCAGTGATCTTG+AGG 0.588665 1_3:-4776870 Msa0098750:CDS
CCTGCTAGTGCCGCTATGTG+TGG 0.589521 1_3:-4773502 Msa0098750:CDS
ACCTTGCTTTCACTTTCAGT+AGG 0.590697 1_3:+4772045 None:intergenic
AGTATCTCAGCTGCACCTTG+GGG 0.590798 1_3:-4772555 Msa0098750:CDS
CTACTTACCACAGGGTGTGA+GGG 0.591196 1_3:+4772814 None:intergenic
TGGAGAATATGCTGGACTCA+TGG 0.594256 1_3:-4773948 Msa0098750:CDS
ATCATGAGTGTACCAGGCAC+AGG 0.594276 1_3:+4772072 None:intergenic
TCTGAAACGTCTTCTTTCAG+AGG 0.595919 1_3:-4777364 Msa0098750:CDS
GTCTCCCTAACTAATCCAGA+AGG 0.596032 1_3:+4774764 None:intergenic
TTACACATACATAGCCATGA+TGG 0.598851 1_3:-4772508 Msa0098750:CDS
CTACATGGCGAAACGATTGG+AGG 0.600659 1_3:-4772436 Msa0098750:intron
TGCAAGCAACAATGCTACCA+CGG 0.600676 1_3:+4770609 Msa0098760:intron
GTGTGGAGTGGAGTGTCCGG+GGG 0.601414 1_3:-4770510 Msa0098750:three_prime_UTR
TACACATACATAGCCATGAT+GGG 0.601681 1_3:-4772507 Msa0098750:CDS
GAAGGGTGCAGATCAGGTTG+CGG 0.602664 1_3:+4771262 None:intergenic
GGGTACACTTAGACGGAGGA+AGG 0.603790 1_3:+4770798 None:intergenic
GAAGGAATCAAATCCAGTGA+TGG 0.605184 1_3:+4773997 None:intergenic
ATTATCATCATTATCATAGG+AGG 0.606094 1_3:+4771101 None:intergenic
ACAAACCTGTGCATTCATGT+TGG 0.606384 1_3:+4773166 None:intergenic
TGTGTGGAGTGGAGTGTCCG+GGG 0.607254 1_3:-4770511 Msa0098750:three_prime_UTR
ACGAGGGTACACTTAGACGG+AGG 0.607845 1_3:+4770794 None:intergenic
GAAAACAGAGTTTGAAACAG+AGG 0.608096 1_3:+4777266 None:intergenic
ATATTCCTCAAGATCACTGG+TGG 0.611568 1_3:+4776865 None:intergenic
TGACTCCACGGAAAAGAACC+GGG 0.613242 1_3:+4772310 None:intergenic
TGGGACTTACAAGCCCAGGT+TGG 0.613288 1_3:-4772951 Msa0098750:CDS
TATCAAGCTGAGATTTCGCA+AGG 0.613962 1_3:-4776805 Msa0098750:CDS
ACCTTGATTACTGATCTCAC+TGG 0.613967 1_3:-4776754 Msa0098750:intron
AGATGGATATGAGTTGTGGT+AGG 0.614556 1_3:+4771037 None:intergenic
ATGAAACTTAAGAAGAGCAG+TGG 0.615191 1_3:+4771078 None:intergenic
ATATGTGTTGGTATAGCAAG+TGG 0.615588 1_3:+4770651 Msa0098760:intron
TTCATGGACCAACAATGTCA+TGG 0.616001 1_3:-4772095 Msa0098750:CDS
TTTGGTATGATAACCATGGT+GGG 0.616227 1_3:+4770152 Msa0098760:CDS
GTTACATATCCTTCAACTCA+CGG 0.616918 1_3:-4773263 Msa0098750:CDS
CACCAATAGGACCCATGCCA+GGG 0.618161 1_3:+4772863 None:intergenic
TCCACGAGGGTACACTTAGA+CGG 0.618659 1_3:+4770791 None:intergenic
TGAGGACCACCATAACCCAT+TGG 0.618896 1_3:+4776322 None:intergenic
ATAATGAAGGTGCCAACTGG+TGG 0.619660 1_3:-4772612 Msa0098750:intron
AAAGCTAATAAGGTTACTGG+TGG 0.620023 1_3:-4770428 Msa0098750:three_prime_UTR
GGTGTTCCAATGGGTTATGG+TGG 0.622676 1_3:-4776328 Msa0098750:CDS
CTGGTGGTTTAACAATGTTG+GGG 0.623001 1_3:-4770412 Msa0098750:three_prime_UTR
GTATACTGAGTATACCAAGC+TGG 0.623740 1_3:+4776832 None:intergenic
TTACATATATCAATAGTCTG+TGG 0.626597 1_3:+4776610 None:intergenic
CATCTGCTCCAATCCAACCT+GGG 0.626798 1_3:+4772938 None:intergenic
GAGGAATGCAAAATGTCTTG+TGG 0.626937 1_3:+4772899 None:intergenic
ATTGCAAGGTGGAAAATGTG+TGG 0.627185 1_3:-4770527 Msa0098750:three_prime_UTR
ATATCAGCTCCAAACTCACC+AGG 0.628005 1_3:+4776376 None:intergenic
CTAGGGAGCAGCATATCCGT+AGG 0.628006 1_3:-4776189 Msa0098750:CDS
TCCGTCTAAGTGTACCCTCG+TGG 0.628839 1_3:-4770792 Msa0098750:three_prime_UTR
AGCCTGTGATGCTGGGAGAA+GGG 0.633395 1_3:+4771245 None:intergenic
AGCAAAAGTTAATAGCTGCA+GGG 0.633460 1_3:+4771125 None:intergenic
TGGAAATTAAAATAGAACAA+TGG 0.633910 1_3:+4771182 None:intergenic
GGAGGCCAAGTATACATGGA+TGG 0.634003 1_3:-4773191 Msa0098750:CDS
TCATGCTAATGAGGTTAAGG+TGG 0.638220 1_3:-4776440 Msa0098750:CDS
GAAGACGTTTCAGAGTTGCA+CGG 0.641264 1_3:+4777373 None:intergenic
ATAGCCATGATGGGTTCCAA+AGG 0.644476 1_3:-4772498 Msa0098750:CDS
GGTGAGATGGATATGAGTTG+TGG 0.644895 1_3:+4771033 None:intergenic
TGAAGAACCATTCCCCACCA+TGG 0.645976 1_3:-4770165 Msa0098750:three_prime_UTR
GTGATTTGGGGATTGCAAGG+TGG 0.646830 1_3:-4770538 Msa0098750:three_prime_UTR
TAGGGAGCAGCATATCCGTA+GGG 0.647051 1_3:-4776188 Msa0098750:CDS
GTCTAAGTGTACCCTCGTGG+AGG 0.648557 1_3:-4770789 Msa0098750:three_prime_UTR
GGAATAACACTATTATGCTG+TGG 0.649282 1_3:+4771203 None:intergenic
TGGTGCCAACATGAATGCAC+AGG 0.649644 1_3:-4773171 Msa0098750:intron
ACTAAAGAAACTTGGAACAG+TGG 0.650456 1_3:-4775583 Msa0098750:CDS
AACTCAACCATCCAACCAAG+AGG 0.651121 1_3:+4770731 Msa0098760:CDS
TATTGGTGTAAAGAAACACT+TGG 0.652793 1_3:-4772848 Msa0098750:CDS
TGCATAATTATGGAGAGCCG+TGG 0.660075 1_3:-4770626 Msa0098750:three_prime_UTR
ACCATAGGAACTGATGCCAA+GGG 0.662243 1_3:-4773466 Msa0098750:CDS
AAGATCATCCATGATAATGG+AGG 0.664150 1_3:-4773209 Msa0098750:CDS
GTAGCCAAGAAAGCAGCATG+AGG 0.665305 1_3:+4776304 None:intergenic
TTCATTGTACAGGATCCAAG+TGG 0.667793 1_3:+4774537 None:intergenic
ATTATACCAGTCTCAGCACA+TGG 0.669363 1_3:-4773532 Msa0098750:CDS
GTTTGGTATGATAACCATGG+TGG 0.677617 1_3:+4770151 Msa0098760:CDS
CCAGGGCCACCTCCTCCATG+AGG 0.682437 1_3:+4772880 None:intergenic
AAGGTGGAAAATGTGTGGAG+TGG 0.694847 1_3:-4770522 Msa0098750:three_prime_UTR
TCATTGTACAGGATCCAAGT+GGG 0.695896 1_3:+4774538 None:intergenic
GAAGGCTGCTGAAACACACA+AGG 0.698024 1_3:-4773419 Msa0098750:CDS
GCATAAACTAGAGCCATATG+GGG 0.702685 1_3:-4770115 Msa0098750:three_prime_UTR
ATCCAAGTGGGATCATACTG+TGG 0.704371 1_3:+4774550 None:intergenic
AATATGAGCGCTGATCCCCA+AGG 0.710914 1_3:+4772540 None:intergenic
AGAAACAGCAATGTTTCACG+TGG 0.715615 1_3:-4777216 Msa0098750:CDS
TATGTGAAACTGTAGTCAAG+AGG 0.724753 1_3:-4773577 Msa0098750:intron
CTGGTATAATGCAGACATTG+CGG 0.730670 1_3:+4773545 None:intergenic
GGTGTTTGGTATGATAACCA+TGG 0.732891 1_3:+4770148 Msa0098760:CDS
TCAGCTCCAAACTCACCAGG+AGG 0.733104 1_3:+4776379 None:intergenic
CAGAACCAGAACCTCCACGA+GGG 0.744854 1_3:+4770778 Msa0098760:CDS
TTGGTATGATAACCATGGTG+GGG 0.745605 1_3:+4770153 Msa0098760:CDS
GCAGCTGAGATACTACCAAG+TGG 0.755051 1_3:+4772564 None:intergenic
GTATAATGCAGACATTGCGG+TGG 0.758730 1_3:+4773548 None:intergenic
ACAGAACCAGAACCTCCACG+AGG 0.776817 1_3:+4770777 Msa0098760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGAAAATAATATTTTGT+TGG + chr1_3:4772343-4772362 None:intergenic 10.0%
!! TATGTGTAATAATATTCAAA+AGG - chr1_3:4770813-4770832 Msa0098750:three_prime_UTR 15.0%
!! ATGTGTAATAATATTCAAAA+GGG - chr1_3:4770814-4770833 Msa0098750:three_prime_UTR 15.0%
!! TTGATAAATAAGAGTAATAT+TGG - chr1_3:4773222-4773241 Msa0098750:CDS 15.0%
!!! TTTTCATTTCGTATAATAAT+TGG - chr1_3:4773766-4773785 Msa0098750:intron 15.0%
!!! AAAGTTTTGTTTAAATACTA+TGG - chr1_3:4775815-4775834 Msa0098750:intron 15.0%
!!! TACTTTTTTTGCTTTTTTTT+TGG + chr1_3:4776484-4776503 None:intergenic 15.0%
!!! TTGACATTTTTATGATATAT+AGG + chr1_3:4776557-4776576 None:intergenic 15.0%
!! ACTACTAATACAAATTTAAT+TGG + chr1_3:4776666-4776685 None:intergenic 15.0%
!!! AAAAACTAGAGAATTTTTAA+AGG - chr1_3:4776897-4776916 Msa0098750:CDS 15.0%
!!! TTTTTAGTTATATATGTGTG+TGG - chr1_3:4771378-4771397 Msa0098750:intron 20.0%
!!! ATCCTTTAATTTTTACCAAA+CGG + chr1_3:4772249-4772268 None:intergenic 20.0%
!! ATGGATAAACTAATTGATAT+TGG - chr1_3:4772270-4772289 Msa0098750:CDS 20.0%
!! ATAAACTAATTGATATTGGA+TGG - chr1_3:4772274-4772293 Msa0098750:CDS 20.0%
!!! GAAAATAATATTTTGTTGGT+AGG + chr1_3:4772339-4772358 None:intergenic 20.0%
!!! ACAATTGATAATTGTGAAAA+AGG + chr1_3:4772617-4772636 None:intergenic 20.0%
!! TGTAAAAATAGAAGTTTAGA+TGG + chr1_3:4772649-4772668 None:intergenic 20.0%
!!! TGAATTGAAATTTTGTGAAA+AGG + chr1_3:4772785-4772804 None:intergenic 20.0%
!! ATATGTTCTTATATATGTTG+CGG - chr1_3:4773369-4773388 Msa0098750:intron 20.0%
!! TAATTCAAGACAATAATGTA+GGG + chr1_3:4773847-4773866 None:intergenic 20.0%
!! TTAATTCAAGACAATAATGT+AGG + chr1_3:4773848-4773867 None:intergenic 20.0%
!!! GGAGTTTGTTTATATTTATT+TGG - chr1_3:4774180-4774199 Msa0098750:intron 20.0%
!!! TTGGTTTTGATTTAAATTGT+AGG - chr1_3:4774199-4774218 Msa0098750:intron 20.0%
!!! AACACAAAGTATTAACATAA+AGG + chr1_3:4774357-4774376 None:intergenic 20.0%
!! TTATGTTAATACTTTGTGTT+AGG - chr1_3:4774357-4774376 Msa0098750:intron 20.0%
!!! ATACAGGTTTTTATTGAATA+TGG + chr1_3:4775876-4775895 None:intergenic 20.0%
!!! AGAAAATCTTTGAAATATAC+AGG + chr1_3:4775892-4775911 None:intergenic 20.0%
!!! TATAGATATTTCAAGTATGT+AGG - chr1_3:4776030-4776049 Msa0098750:intron 20.0%
!!! TTATGTGTTTTCTTTATATC+AGG - chr1_3:4776175-4776194 Msa0098750:CDS 20.0%
!! TGGAAATTAAAATAGAACAA+TGG + chr1_3:4776305-4776324 None:intergenic 20.0%
!!! TGCTTTTTTTTTGGTATAAT+GGG + chr1_3:4776475-4776494 None:intergenic 20.0%
!!! TTGCTTTTTTTTTGGTATAA+TGG + chr1_3:4776476-4776495 None:intergenic 20.0%
!! TAATTATGCAATATATGTGT+TGG + chr1_3:4776848-4776867 None:intergenic 20.0%
!! ACACATATATTGCATAATTA+TGG - chr1_3:4776848-4776867 Msa0098750:CDS 20.0%
!! GTGTTTCTTAGTTTATTATA+TGG - chr1_3:4777094-4777113 Msa0098750:CDS 20.0%
! TATCTTGATGAAGATGAAAA+TGG + chr1_3:4770193-4770212 Msa0098760:intron 25.0%
! TAAACTTCATTTCCTTCAAA+CGG + chr1_3:4770483-4770502 Msa0098760:intron 25.0%
! AAGTTTAACAAGTTTGATGA+AGG - chr1_3:4770496-4770515 Msa0098750:three_prime_UTR 25.0%
! AGTTTAACAAGTTTGATGAA+GGG - chr1_3:4770497-4770516 Msa0098750:three_prime_UTR 25.0%
!! AAGGTTTTCAAATCTTTCAT+TGG - chr1_3:4770571-4770590 Msa0098750:three_prime_UTR 25.0%
! TTTCAAATCTTTCATTGGTA+TGG - chr1_3:4770576-4770595 Msa0098750:three_prime_UTR 25.0%
! TTCAAATCTTTCATTGGTAT+GGG - chr1_3:4770577-4770596 Msa0098750:three_prime_UTR 25.0%
! TTACATATATCAATAGTCTG+TGG + chr1_3:4770877-4770896 None:intergenic 25.0%
!! AAGGATATTGATTACAAATC+TGG - chr1_3:4770943-4770962 Msa0098750:three_prime_UTR 25.0%
! TTATGGTGAGTTTATTAAGA+AGG - chr1_3:4771020-4771039 Msa0098750:three_prime_UTR 25.0%
!!! TAGGCTTTAAATCACTTATA+TGG - chr1_3:4771450-4771469 Msa0098750:intron 25.0%
!!! TTGTTTAAAATTTTGTGACG+CGG + chr1_3:4771476-4771495 None:intergenic 25.0%
! ATACTTTGATTATCTTGTTC+AGG - chr1_3:4771678-4771697 Msa0098750:intron 25.0%
!!! TTGAGGATTTTATTTCATTC+TGG - chr1_3:4771757-4771776 Msa0098750:intron 25.0%
!! AATTTAGGATCAAAACTTAC+AGG + chr1_3:4772222-4772241 None:intergenic 25.0%
!!! TGTAAGTTTTGATCCTAAAT+TGG - chr1_3:4772221-4772240 Msa0098750:intron 25.0%
! TGGTAAAAATTAAAGGATGA+TGG - chr1_3:4772251-4772270 Msa0098750:intron 25.0%
!! GTAGATGAGACATTTTTATT+TGG + chr1_3:4772372-4772391 None:intergenic 25.0%
!!! CTAAACTTCTATTTTTACAC+AGG - chr1_3:4772650-4772669 Msa0098750:intron 25.0%
! ATACATACGTGTTAAAGATA+GGG + chr1_3:4772761-4772780 None:intergenic 25.0%
! AATACATACGTGTTAAAGAT+AGG + chr1_3:4772762-4772781 None:intergenic 25.0%
! TCACAAAATTTCAATTCATG+TGG - chr1_3:4772787-4772806 Msa0098750:intron 25.0%
! AAAAGACAGTTAATATGAGA+CGG + chr1_3:4773076-4773095 None:intergenic 25.0%
!! CTCATATTAACTGTCTTTTA+AGG - chr1_3:4773077-4773096 Msa0098750:intron 25.0%
!! ACATATCAAAGTGTCAAATT+TGG + chr1_3:4773297-4773316 None:intergenic 25.0%
!!! ATTAAAAGTGTTGTGAAACT+TGG - chr1_3:4774158-4774177 Msa0098750:intron 25.0%
!!! TTAAAAGTGTTGTGAAACTT+GGG - chr1_3:4774159-4774178 Msa0098750:intron 25.0%
!! AACAAATCTCTCTTTCATTT+TGG - chr1_3:4774454-4774473 Msa0098750:intron 25.0%
!! TTTCTTCAATATCTTTTGGA+AGG + chr1_3:4774810-4774829 None:intergenic 25.0%
!! GTTCTTTCTTCAATATCTTT+TGG + chr1_3:4774814-4774833 None:intergenic 25.0%
! AAGATATTGAAGAAAGAACA+TGG - chr1_3:4774815-4774834 Msa0098750:CDS 25.0%
! ATTATCTGTTGCTATAATGA+AGG - chr1_3:4774859-4774878 Msa0098750:intron 25.0%
!! GAAAGCAAGGTATTTATATA+TGG - chr1_3:4775451-4775470 Msa0098750:intron 25.0%
!!! AATATTTTTTCTTCCTAGGA+AGG + chr1_3:4775478-4775497 None:intergenic 25.0%
!!! GGATAATATTTTTTCTTCCT+AGG + chr1_3:4775482-4775501 None:intergenic 25.0%
! ATTCTGTTATGCAATGAATT+AGG - chr1_3:4775780-4775799 Msa0098750:intron 25.0%
! TTCTGTTATGCAATGAATTA+GGG - chr1_3:4775781-4775800 Msa0098750:intron 25.0%
! GGATTAATTGTGTTTGATAA+GGG + chr1_3:4775950-4775969 None:intergenic 25.0%
! AGGATTAATTGTGTTTGATA+AGG + chr1_3:4775951-4775970 None:intergenic 25.0%
! ACAACTGAATAATACCAATA+GGG - chr1_3:4775988-4776007 Msa0098750:intron 25.0%
! ACTATAATAATAATCCCCTA+TGG + chr1_3:4776056-4776075 None:intergenic 25.0%
! TTAGTCAAACAAAATTATGC+AGG + chr1_3:4776139-4776158 None:intergenic 25.0%
! ATTATCATCATTATCATAGG+AGG + chr1_3:4776386-4776405 None:intergenic 25.0%
! TGGATTATCATCATTATCAT+AGG + chr1_3:4776389-4776408 None:intergenic 25.0%
! CTTAGTTTATTATATGGCTA+TGG - chr1_3:4777100-4777119 Msa0098750:CDS 25.0%
ACCAGAAGAACAAACAAAAA+TGG - chr1_3:4770396-4770415 Msa0098750:three_prime_UTR 30.0%
TCAAATGATTGAACACATGA+AGG - chr1_3:4770531-4770550 Msa0098750:three_prime_UTR 30.0%
! GGATTTAGCTTCAAAGAATA+AGG - chr1_3:4770552-4770571 Msa0098750:three_prime_UTR 30.0%
AAAATATTCCTCAAGATCAC+TGG + chr1_3:4770625-4770644 Msa0098760:intron 30.0%
! AGTGATCTTGAGGAATATTT+TGG - chr1_3:4770624-4770643 Msa0098750:three_prime_UTR 30.0%
! AGGTGTATTTCTACACAAAA+GGG + chr1_3:4771569-4771588 None:intergenic 30.0%
! AAGGTGTATTTCTACACAAA+AGG + chr1_3:4771570-4771589 None:intergenic 30.0%
GATACTTTGTACTTGTAACA+TGG - chr1_3:4771641-4771660 Msa0098750:intron 30.0%
ACATTGCTTCTACAATTCAA+AGG + chr1_3:4771713-4771732 None:intergenic 30.0%
!! GGATTTTATTTCATTCTGGT+TGG - chr1_3:4771761-4771780 Msa0098750:intron 30.0%
ATCAATTTGAGAGTTGTAGA+TGG - chr1_3:4772010-4772029 Msa0098750:intron 30.0%
TAAAACCACTCAAACTGATT+TGG + chr1_3:4772085-4772104 None:intergenic 30.0%
TGATGAAACAACTACATTAG+AGG - chr1_3:4772158-4772177 Msa0098750:intron 30.0%
! AAGCTTTTCAAAGTTTTTGC+TGG - chr1_3:4772189-4772208 Msa0098750:intron 30.0%
CTCCGTTTGGTAAAAATTAA+AGG - chr1_3:4772244-4772263 Msa0098750:intron 30.0%
TAAAGCAGTCTTAATATACG+TGG + chr1_3:4772407-4772426 None:intergenic 30.0%
ACGTATATTAAGACTGCTTT+AGG - chr1_3:4772406-4772425 Msa0098750:intron 30.0%
!! CCTCACTTTTGAAGATTATT+GGG - chr1_3:4772429-4772448 Msa0098750:intron 30.0%
TTGTGAAAAAGGATATACGA+TGG + chr1_3:4772606-4772625 None:intergenic 30.0%
!! AATTCCTTCTGGATTAGTTA+GGG - chr1_3:4772716-4772735 Msa0098750:intron 30.0%
! CAATTCATGTGGTTGAATTT+TGG - chr1_3:4772798-4772817 Msa0098750:intron 30.0%
AGTTGTTGAGATACATTCAT+AGG - chr1_3:4772885-4772904 Msa0098750:CDS 30.0%
! CTTCACAAATTAGTTGGTAT+AGG + chr1_3:4773131-4773150 None:intergenic 30.0%
ACTTTGCTTCACAAATTAGT+TGG + chr1_3:4773137-4773156 None:intergenic 30.0%
TCTTGTACTCATTTATGATC+AGG - chr1_3:4773178-4773197 Msa0098750:CDS 30.0%
TTTGACACTTTGATATGTGA+TGG - chr1_3:4773299-4773318 Msa0098750:intron 30.0%
! CAGTTCTATCGCATATTTTA+AGG + chr1_3:4773397-4773416 None:intergenic 30.0%
TGTGTCTTAACAAGCAAATT+TGG - chr1_3:4773424-4773443 Msa0098750:CDS 30.0%
! AAAATAAACTCCTGATTTGC+AGG - chr1_3:4773700-4773719 Msa0098750:intron 30.0%
AAGAGAAAACAACACATTTG+AGG + chr1_3:4773795-4773814 None:intergenic 30.0%
! AATTTTCATTCCACACATAG+CGG + chr1_3:4773995-4774014 None:intergenic 30.0%
TTCAATGTTAATGTTTCCCT+TGG + chr1_3:4774037-4774056 None:intergenic 30.0%
TAACATTGAAGAGTTGAAGA+AGG - chr1_3:4774047-4774066 Msa0098750:intron 30.0%
ATCTGCATTTATGGTACAAT+TGG - chr1_3:4774095-4774114 Msa0098750:intron 30.0%
AAGTGTTTCTTTACACCAAT+AGG + chr1_3:4774637-4774656 None:intergenic 30.0%
TATTGGTGTAAAGAAACACT+TGG - chr1_3:4774636-4774655 Msa0098750:intron 30.0%
!! ATCTTTTGGAAGGATTTCTT+TGG + chr1_3:4774800-4774819 None:intergenic 30.0%
! CATGTAGTTTGCATTCAAAA+TGG + chr1_3:4775035-4775054 None:intergenic 30.0%
! CATTTTGAATGCAAACTACA+TGG - chr1_3:4775033-4775052 Msa0098750:intron 30.0%
AAGTATACGAGTAAAAACCA+AGG + chr1_3:4775134-4775153 None:intergenic 30.0%
!! GAGTTCATTATTGACTTAAG+AGG - chr1_3:4775214-4775233 Msa0098750:intron 30.0%
!! TATTGACTTAAGAGGCTTTA+AGG - chr1_3:4775222-4775241 Msa0098750:intron 30.0%
ATTTATATATGGACCTTCCT+AGG - chr1_3:4775462-4775481 Msa0098750:intron 30.0%
! CTCAGCAATTTCTTTTCTAA+TGG + chr1_3:4775612-4775631 None:intergenic 30.0%
TGTTCACAACAATGTTCTTA+AGG - chr1_3:4775652-4775671 Msa0098750:CDS 30.0%
TCTTAAGCATGTCTACTTAT+CGG - chr1_3:4775840-4775859 Msa0098750:intron 30.0%
TGTGCTATGGAAAACAAAAA+AGG + chr1_3:4775971-4775990 None:intergenic 30.0%
CACAACTGAATAATACCAAT+AGG - chr1_3:4775987-4776006 Msa0098750:intron 30.0%
CAACTGAATAATACCAATAG+GGG - chr1_3:4775989-4776008 Msa0098750:intron 30.0%
!! AATGGTTATGCACTACTTTT+TGG - chr1_3:4776113-4776132 Msa0098750:intron 30.0%
! AGGAAGATTTTATGTACAAC+TGG + chr1_3:4776325-4776344 None:intergenic 30.0%
TGTGTATCGAAAAGCTAATA+AGG - chr1_3:4777046-4777065 Msa0098750:CDS 30.0%
! AGATGCTATGTTGATGTTTT+AGG - chr1_3:4777147-4777166 Msa0098750:intron 30.0%
GATGAAGATGAAAATGGAAG+AGG + chr1_3:4770187-4770206 Msa0098760:intron 35.0%
! GAAAACAGAGTTTGAAACAG+AGG + chr1_3:4770221-4770240 Msa0098760:intron 35.0%
! AACTCTGTTTTCAGAAACAG+AGG - chr1_3:4770229-4770248 Msa0098750:three_prime_UTR 35.0%
TTTCAAAGCTTCAACAGTGA+TGG + chr1_3:4770338-4770357 Msa0098760:intron 35.0%
!!! GCCATTTTTGTTTGTTCTTC+TGG + chr1_3:4770400-4770419 Msa0098760:intron 35.0%
ACAAAAATGGCTGAATCATG+TGG - chr1_3:4770409-4770428 Msa0098750:three_prime_UTR 35.0%
!! TCCTTCAAACGGATTGATTT+CGG + chr1_3:4770472-4770491 Msa0098760:intron 35.0%
TTTGATGAAGGGTTAACAGA+AGG - chr1_3:4770508-4770527 Msa0098750:three_prime_UTR 35.0%
!! ATATTTTGGAGAATCCAGCT+TGG - chr1_3:4770638-4770657 Msa0098750:three_prime_UTR 35.0%
! AGCAATGAAGCATTTGACAT+AGG + chr1_3:4770760-4770779 Msa0098760:CDS 35.0%
AATGCTTCATTGCTTGATGA+AGG - chr1_3:4770766-4770785 Msa0098750:three_prime_UTR 35.0%
! TACAAATCTGGTGATGTTTG+TGG - chr1_3:4770955-4770974 Msa0098750:three_prime_UTR 35.0%
TAATGAGGTTAAGGTGGTTA+TGG - chr1_3:4771050-4771069 Msa0098750:three_prime_UTR 35.0%
! TTTGGAGCTGATATTGTTGT+TGG - chr1_3:4771117-4771136 Msa0098750:three_prime_UTR 35.0%
! AGCTGATATTGTTGTTGGTT+CGG - chr1_3:4771122-4771141 Msa0098750:three_prime_UTR 35.0%
! CTACTTCACAAGAGTATAAG+AGG - chr1_3:4771199-4771218 Msa0098750:three_prime_UTR 35.0%
CTCAGGTAACTTAGCTTATT+TGG - chr1_3:4771346-4771365 Msa0098750:intron 35.0%
! TTTTTGTTGCGATCGTTTGA+TGG - chr1_3:4771508-4771527 Msa0098750:intron 35.0%
TACACAAAAGGGGTTTCAAA+AGG + chr1_3:4771558-4771577 None:intergenic 35.0%
! GGTGTATTTCTACACAAAAG+GGG + chr1_3:4771568-4771587 None:intergenic 35.0%
TAGTCGATACTAAACAGCAA+TGG - chr1_3:4771619-4771638 Msa0098750:intron 35.0%
TTGCATGAGTGAATTAGTTG+AGG - chr1_3:4771740-4771759 Msa0098750:intron 35.0%
!!! CATTCTGGTTGGTTTTGTTT+AGG - chr1_3:4771772-4771791 Msa0098750:intron 35.0%
TCCATGATATACAGCATACA+TGG + chr1_3:4771819-4771838 None:intergenic 35.0%
CCTTAAAGCTATTGCACAAA+GGG - chr1_3:4771847-4771866 Msa0098750:CDS 35.0%
ACTAAAGAAACTTGGAACAG+TGG - chr1_3:4771901-4771920 Msa0098750:CDS 35.0%
TTGTACCAAATCAGTTTGAG+TGG - chr1_3:4772077-4772096 Msa0098750:CDS 35.0%
!! TGAGTGGTTTTACATGTCTT+CGG - chr1_3:4772093-4772112 Msa0098750:CDS 35.0%
TACATGTCTTCGGATTATGA+TGG - chr1_3:4772103-4772122 Msa0098750:CDS 35.0%
! CTTTTCAAAGTTTTTGCTGG+TGG - chr1_3:4772192-4772211 Msa0098750:intron 35.0%
ACTAATTGATATTGGATGGC+TGG - chr1_3:4772278-4772297 Msa0098750:CDS 35.0%
TGTCTCATCTACTGAGAAAA+AGG - chr1_3:4772380-4772399 Msa0098750:intron 35.0%
GTCTCATCTACTGAGAAAAA+GGG - chr1_3:4772381-4772400 Msa0098750:intron 35.0%
!! GCCTCACTTTTGAAGATTAT+TGG - chr1_3:4772428-4772447 Msa0098750:intron 35.0%
CCCAATAATCTTCAAAAGTG+AGG + chr1_3:4772432-4772451 None:intergenic 35.0%
!! ACTTTTGAAGATTATTGGGC+CGG - chr1_3:4772433-4772452 Msa0098750:intron 35.0%
!! GGAATTGCATTCTGAAATTC+TGG + chr1_3:4772702-4772721 None:intergenic 35.0%
TTTCAGAATGCAATTCCTTC+TGG - chr1_3:4772705-4772724 Msa0098750:intron 35.0%
!! CAATTCCTTCTGGATTAGTT+AGG - chr1_3:4772715-4772734 Msa0098750:intron 35.0%
AAGATAGGGTGTGTCAAATA+AGG + chr1_3:4772747-4772766 None:intergenic 35.0%
! TAACAAGCAAATTTGGTTCC+AGG - chr1_3:4773431-4773450 Msa0098750:CDS 35.0%
CAGGAAATGTTCGACAATTT+GGG - chr1_3:4773450-4773469 Msa0098750:CDS 35.0%
GGTTATTCGTGCATATCATA+TGG - chr1_3:4773557-4773576 Msa0098750:CDS 35.0%
TTCGTGCATATCATATGGTA+TGG - chr1_3:4773562-4773581 Msa0098750:CDS 35.0%
CATATGGTATGGTACTAACT+TGG - chr1_3:4773573-4773592 Msa0098750:intron 35.0%
TATGTAATAGCCTGCAAATC+AGG + chr1_3:4773713-4773732 None:intergenic 35.0%
!! AAAGAAGTAAGAAGCATCAC+AGG + chr1_3:4773883-4773902 None:intergenic 35.0%
! GTGATGCTTCTTACTTCTTT+TGG - chr1_3:4773883-4773902 Msa0098750:intron 35.0%
TATGTGAAACTGTAGTCAAG+AGG - chr1_3:4773907-4773926 Msa0098750:intron 35.0%
GGAATGAAAATTGTCACCAT+AGG - chr1_3:4774003-4774022 Msa0098750:CDS 35.0%
GGACAACTTATCTGCATTTA+TGG - chr1_3:4774086-4774105 Msa0098750:intron 35.0%
GTTACATATCCTTCAACTCA+CGG - chr1_3:4774221-4774240 Msa0098750:intron 35.0%
TGCAAGATCATCCATGATAA+TGG - chr1_3:4774272-4774291 Msa0098750:intron 35.0%
!! AAGATCATCCATGATAATGG+AGG - chr1_3:4774275-4774294 Msa0098750:intron 35.0%
TCTGGAAAGGATAGTTCTTA+GGG - chr1_3:4774387-4774406 Msa0098750:intron 35.0%
!!! TCATTTTGGTTTAAGTCCTC+CGG - chr1_3:4774468-4774487 Msa0098750:intron 35.0%
! AATCTCTTTCCTCTAAGAAC+CGG + chr1_3:4774490-4774509 None:intergenic 35.0%
! AAGACATTTTGCATTCCTCA+TGG - chr1_3:4774589-4774608 Msa0098750:CDS 35.0%
! TGCTTTTACTACTTACCACA+GGG + chr1_3:4774681-4774700 None:intergenic 35.0%
GCTATGTATGTGTAAGAGAT+AGG + chr1_3:4774971-4774990 None:intergenic 35.0%
TTACACATACATAGCCATGA+TGG - chr1_3:4774976-4774995 Msa0098750:intron 35.0%
TACACATACATAGCCATGAT+GGG - chr1_3:4774977-4774996 Msa0098750:intron 35.0%
GTGTCATATATGATGAACCT+TGG - chr1_3:4775114-4775133 Msa0098750:intron 35.0%
ACTTCTGTAGAGTTATTACC+CGG - chr1_3:4775156-4775175 Msa0098750:intron 35.0%
TTTCCATTGTAGAATACTGC+TGG - chr1_3:4775322-4775341 Msa0098750:CDS 35.0%
TTCCATTGTAGAATACTGCT+GGG - chr1_3:4775323-4775342 Msa0098750:CDS 35.0%
ATTCAACTAAACATCGTTGC+AGG - chr1_3:4775553-4775572 Msa0098750:CDS 35.0%
GAAATTGCTGAGATTGAGAA+AGG - chr1_3:4775620-4775639 Msa0098750:CDS 35.0%
! AGAATGCAATGATTGGTTAG+TGG - chr1_3:4775695-4775714 Msa0098750:intron 35.0%
GGTATTATTCAGTTGTGCTA+TGG + chr1_3:4775984-4776003 None:intergenic 35.0%
! ATTTCAAGTATGTAGGCCAT+AGG - chr1_3:4776037-4776056 Msa0098750:intron 35.0%
! TTTCAAGTATGTAGGCCATA+GGG - chr1_3:4776038-4776057 Msa0098750:intron 35.0%
!! TTTTGTTTGACTGCCTGTAA+TGG - chr1_3:4776095-4776114 Msa0098750:intron 35.0%
AAGTAGTGCATAACCATTAC+AGG + chr1_3:4776111-4776130 None:intergenic 35.0%
GGAATAACACTATTATGCTG+TGG + chr1_3:4776284-4776303 None:intergenic 35.0%
AGCAAAAGTTAATAGCTGCA+GGG + chr1_3:4776362-4776381 None:intergenic 35.0%
AAGCAAAAGTTAATAGCTGC+AGG + chr1_3:4776363-4776382 None:intergenic 35.0%
ATGAAACTTAAGAAGAGCAG+TGG + chr1_3:4776409-4776428 None:intergenic 35.0%
!!! TTTTGGTATAATGGGTGAGA+TGG + chr1_3:4776467-4776486 None:intergenic 35.0%
!! GCTGCTGCTATTTGAATTTT+AGG - chr1_3:4776518-4776537 Msa0098750:CDS 35.0%
!! TTCTGGTTCTGTTTCTGTTT+CGG - chr1_3:4776718-4776737 Msa0098750:intron 35.0%
GTCTTCTTCCTAATGCAAAA+GGG - chr1_3:4776786-4776805 Msa0098750:CDS 35.0%
! ATATGTGTTGGTATAGCAAG+TGG + chr1_3:4776836-4776855 None:intergenic 35.0%
TTTAAAGGTTGAGCTTCACT+TGG - chr1_3:4776912-4776931 Msa0098750:CDS 35.0%
CGAAAAGCTAATAAGGTTAC+TGG - chr1_3:4777053-4777072 Msa0098750:CDS 35.0%
AAAGCTAATAAGGTTACTGG+TGG - chr1_3:4777056-4777075 Msa0098750:CDS 35.0%
TACTGGTGGTTTAACAATGT+TGG - chr1_3:4777070-4777089 Msa0098750:CDS 35.0%
ACTGGTGGTTTAACAATGTT+GGG - chr1_3:4777071-4777090 Msa0098750:CDS 35.0%
ATCTTCCTAACTGGAGAATA+GGG + chr1_3:4777131-4777150 None:intergenic 35.0%
TTTGGTATGATAACCATGGT+GGG + chr1_3:4777335-4777354 None:intergenic 35.0%
CTAGTTTATGCAAACATTGG+AGG + chr1_3:4777360-4777379 None:intergenic 35.0%
! GCTCTAGTTTATGCAAACAT+TGG + chr1_3:4777363-4777382 None:intergenic 35.0%
TTGCATAAACTAGAGCCATA+TGG - chr1_3:4777367-4777386 Msa0098750:CDS 35.0%
TGCATAAACTAGAGCCATAT+GGG - chr1_3:4777368-4777387 Msa0098750:CDS 35.0%
! TCTGAAACGTCTTCTTTCAG+AGG - chr1_3:4770120-4770139 Msa0098750:three_prime_UTR 40.0%
! AACAGAGGATCCAACGTTTT+TGG - chr1_3:4770244-4770263 Msa0098750:three_prime_UTR 40.0%
!! GCTGTTTCTTCCAAAAACGT+TGG + chr1_3:4770257-4770276 Msa0098760:intron 40.0%
AGAAACAGCAATGTTTCACG+TGG - chr1_3:4770268-4770287 Msa0098750:three_prime_UTR 40.0%
TCCGAAATCAATCCGTTTGA+AGG - chr1_3:4770468-4770487 Msa0098750:three_prime_UTR 40.0%
ATATTCCTCAAGATCACTGG+TGG + chr1_3:4770622-4770641 Msa0098760:intron 40.0%
GTATACTGAGTATACCAAGC+TGG + chr1_3:4770655-4770674 Msa0098760:intron 40.0%
TGCGAAATCTCAGCTTGATA+AGG + chr1_3:4770679-4770698 Msa0098760:CDS 40.0%
TATCAAGCTGAGATTTCGCA+AGG - chr1_3:4770679-4770698 Msa0098750:three_prime_UTR 40.0%
ACCTTGATTACTGATCTCAC+TGG - chr1_3:4770730-4770749 Msa0098750:three_prime_UTR 40.0%
ACCAGTGAGATCAGTAATCA+AGG + chr1_3:4770734-4770753 Msa0098760:CDS 40.0%
ATATGTAAGACGAGAGCTGA+TGG - chr1_3:4770889-4770908 Msa0098750:three_prime_UTR 40.0%
!! AGCTGATGGATTTGAGCTTA+AGG - chr1_3:4770903-4770922 Msa0098750:three_prime_UTR 40.0%
TGGATTTGAGCTTAAGGTTG+TGG - chr1_3:4770909-4770928 Msa0098750:three_prime_UTR 40.0%
GGTTGTGGTGAAAGATCTTA+AGG - chr1_3:4770924-4770943 Msa0098750:three_prime_UTR 40.0%
!!! GAAGGTGAGGTTTTGGATTA+TGG - chr1_3:4771003-4771022 Msa0098750:three_prime_UTR 40.0%
TAAGAAGGCTCATGCTAATG+AGG - chr1_3:4771035-4771054 Msa0098750:three_prime_UTR 40.0%
TCATGCTAATGAGGTTAAGG+TGG - chr1_3:4771044-4771063 Msa0098750:three_prime_UTR 40.0%
GGTTATGGCAAGTGATCTAT+TGG - chr1_3:4771065-4771084 Msa0098750:three_prime_UTR 40.0%
ATGATGCCTGGAAGAATCAT+TGG - chr1_3:4771222-4771241 Msa0098750:three_prime_UTR 40.0%
CTAACACCAATGATTCTTCC+AGG + chr1_3:4771231-4771250 None:intergenic 40.0%
!! GGTGTTAGTGTTGATTCTTC+TGG - chr1_3:4771243-4771262 Msa0098750:three_prime_UTR 40.0%
AAGGTCTGTGACTACAATCT+GGG + chr1_3:4771539-4771558 None:intergenic 40.0%
AAAGGTCTGTGACTACAATC+TGG + chr1_3:4771540-4771559 None:intergenic 40.0%
ATACACCTTGTGTGTCCAAT+CGG - chr1_3:4771581-4771600 Msa0098750:intron 40.0%
GCCATGTATGCTGTATATCA+TGG - chr1_3:4771815-4771834 Msa0098750:intron 40.0%
GCCTTAAAGCTATTGCACAA+AGG - chr1_3:4771846-4771865 Msa0098750:CDS 40.0%
! CCCTTTGTGCAATAGCTTTA+AGG + chr1_3:4771850-4771869 None:intergenic 40.0%
TCTTGCTGGTGTATTTGCTT+TGG - chr1_3:4771877-4771896 Msa0098750:CDS 40.0%
CTTGCTGGTGTATTTGCTTT+GGG - chr1_3:4771878-4771897 Msa0098750:CDS 40.0%
!! GCTTTGGGACTAAAGAAACT+TGG - chr1_3:4771893-4771912 Msa0098750:CDS 40.0%
TGGCTTCTTTGATACTGTGA+AGG - chr1_3:4771937-4771956 Msa0098750:intron 40.0%
GTAGATGGAAACACTGTAAG+TGG - chr1_3:4772025-4772044 Msa0098750:intron 40.0%
TTACCAAACGGAGCCAATTT+AGG + chr1_3:4772237-4772256 None:intergenic 40.0%
GCTTTAGTTGCCTTACACAT+GGG + chr1_3:4772304-4772323 None:intergenic 40.0%
GGATATACGATGGCTATGTT+TGG + chr1_3:4772596-4772615 None:intergenic 40.0%
TCATTGTACAGGATCCAAGT+GGG + chr1_3:4772949-4772968 None:intergenic 40.0%
TTCATTGTACAGGATCCAAG+TGG + chr1_3:4772950-4772969 None:intergenic 40.0%
TGCATTCAGCTTCATTGTAC+AGG + chr1_3:4772960-4772979 None:intergenic 40.0%
GGGTGAATATCAGTAAAGCT+AGG + chr1_3:4773010-4773029 None:intergenic 40.0%
GACAGTTAATATGAGACGGA+GGG + chr1_3:4773072-4773091 None:intergenic 40.0%
AGACAGTTAATATGAGACGG+AGG + chr1_3:4773073-4773092 None:intergenic 40.0%
GACACTTTGATATGTGATGG+AGG - chr1_3:4773302-4773321 Msa0098750:intron 40.0%
TGATGGAGGAAGTAGTATGA+TGG - chr1_3:4773316-4773335 Msa0098750:intron 40.0%
CCAAATTGTCGAACATTTCC+TGG + chr1_3:4773452-4773471 None:intergenic 40.0%
CCAGGAAATGTTCGACAATT+TGG - chr1_3:4773449-4773468 Msa0098750:CDS 40.0%
GAAGGAATCAAATCCAGTGA+TGG + chr1_3:4773490-4773509 None:intergenic 40.0%
AGCATTTGGTTGCAAAGAGA+AGG + chr1_3:4773508-4773527 None:intergenic 40.0%
TTCTCTTTGCAACCAAATGC+TGG - chr1_3:4773507-4773526 Msa0098750:CDS 40.0%
CTGGTATAATGCAGACATTG+CGG + chr1_3:4773942-4773961 None:intergenic 40.0%
ATTATACCAGTCTCAGCACA+TGG - chr1_3:4773952-4773971 Msa0098750:CDS 40.0%
! TCATAAACACCGTGAGTTGA+AGG + chr1_3:4774233-4774252 None:intergenic 40.0%
ACTCACGGTGTTTATGAAGA+AGG - chr1_3:4774236-4774255 Msa0098750:intron 40.0%
ATACTTGGCCTCCATTATCA+TGG + chr1_3:4774286-4774305 None:intergenic 40.0%
TAATGGAGGCCAAGTATACA+TGG - chr1_3:4774289-4774308 Msa0098750:intron 40.0%
ACAAACCTGTGCATTCATGT+TGG + chr1_3:4774321-4774340 None:intergenic 40.0%
AACTATCCTTTCCAGACTCT+TGG + chr1_3:4774383-4774402 None:intergenic 40.0%
GTCTGGAAAGGATAGTTCTT+AGG - chr1_3:4774386-4774405 Msa0098750:intron 40.0%
! TTCTTAGGGTAGACTAGTTC+AGG - chr1_3:4774401-4774420 Msa0098750:intron 40.0%
AGAGGAAAGAGATTGACACT+TGG - chr1_3:4774496-4774515 Msa0098750:intron 40.0%
! GACACTTGGTTGATGTTTAC+AGG - chr1_3:4774510-4774529 Msa0098750:CDS 40.0%
! ACTTGGTTGATGTTTACAGG+TGG - chr1_3:4774513-4774532 Msa0098750:CDS 40.0%
! CTTGGTTGATGTTTACAGGT+GGG - chr1_3:4774514-4774533 Msa0098750:CDS 40.0%
GAGGAATGCAAAATGTCTTG+TGG + chr1_3:4774588-4774607 None:intergenic 40.0%
! ACATTTTGCATTCCTCATGG+AGG - chr1_3:4774592-4774611 Msa0098750:CDS 40.0%
!! CTGCTTTTACTACTTACCAC+AGG + chr1_3:4774682-4774701 None:intergenic 40.0%
! AAGTGGTTGAGCATTTTCAG+GGG + chr1_3:4774906-4774925 None:intergenic 40.0%
! CAAGTGGTTGAGCATTTTCA+GGG + chr1_3:4774907-4774926 None:intergenic 40.0%
AAACTACATGGCGAAACGAT+TGG - chr1_3:4775045-4775064 Msa0098750:intron 40.0%
ATCCCAGCAGTATTCTACAA+TGG + chr1_3:4775328-4775347 None:intergenic 40.0%
! CTCATGGACTATGGATTTCA+TGG - chr1_3:4775373-4775392 Msa0098750:intron 40.0%
TTCATGGACCAACAATGTCA+TGG - chr1_3:4775389-4775408 Msa0098750:intron 40.0%
ACCTTGCTTTCACTTTCAGT+AGG + chr1_3:4775442-4775461 None:intergenic 40.0%
AAGCAAAAGAGACGCAAAGA+AGG + chr1_3:4775503-4775522 None:intergenic 40.0%
ACACGCAAGAATGCAATGAT+TGG - chr1_3:4775688-4775707 Msa0098750:CDS 40.0%
! ATTGGTTAGTGGACAGTGTT+CGG - chr1_3:4775706-4775725 Msa0098750:intron 40.0%
GCATAACAGAATAGTACAGC+AGG + chr1_3:4775772-4775791 None:intergenic 40.0%
ATGCAATGAATTAGGGTCAC+AGG - chr1_3:4775788-4775807 Msa0098750:intron 40.0%
TGCAATGAATTAGGGTCACA+GGG - chr1_3:4775789-4775808 Msa0098750:intron 40.0%
TTTGATAAGGGCCAAAATGG+AGG + chr1_3:4775938-4775957 None:intergenic 40.0%
GTGTTTGATAAGGGCCAAAA+TGG + chr1_3:4775941-4775960 None:intergenic 40.0%
CTATGATGATATGCCCCTAT+TGG + chr1_3:4776005-4776024 None:intergenic 40.0%
TTCAAGTATGTAGGCCATAG+GGG - chr1_3:4776039-4776058 Msa0098750:intron 40.0%
!! GGACGTGTTGATAATGTGTA+TGG - chr1_3:4776196-4776215 Msa0098750:CDS 40.0%
AGATGGATATGAGTTGTGGT+AGG + chr1_3:4776450-4776469 None:intergenic 40.0%
GGTCTTCTTCCTAATGCAAA+AGG - chr1_3:4776785-4776804 Msa0098750:CDS 40.0%
!!! TGGACTCGCTTTTTGTGATT+TGG - chr1_3:4776932-4776951 Msa0098750:intron 40.0%
!!! GGACTCGCTTTTTGTGATTT+GGG - chr1_3:4776933-4776952 Msa0098750:intron 40.0%
!!! GACTCGCTTTTTGTGATTTG+GGG - chr1_3:4776934-4776953 Msa0098750:intron 40.0%
! TTTGTGATTTGGGGATTGCA+AGG - chr1_3:4776943-4776962 Msa0098750:intron 40.0%
ATTGCAAGGTGGAAAATGTG+TGG - chr1_3:4776957-4776976 Msa0098750:intron 40.0%
CTGGTGGTTTAACAATGTTG+GGG - chr1_3:4777072-4777091 Msa0098750:CDS 40.0%
CATCTTCCTAACTGGAGAAT+AGG + chr1_3:4777132-4777151 None:intergenic 40.0%
CAACATAGCATCTTCCTAAC+TGG + chr1_3:4777140-4777159 None:intergenic 40.0%
TTGGTATGATAACCATGGTG+GGG + chr1_3:4777334-4777353 None:intergenic 40.0%
GTTTGGTATGATAACCATGG+TGG + chr1_3:4777336-4777355 None:intergenic 40.0%
GGTGTTTGGTATGATAACCA+TGG + chr1_3:4777339-4777358 None:intergenic 40.0%
!! ATGCAAACATTGGAGGTGTT+TGG + chr1_3:4777353-4777372 None:intergenic 40.0%
GCATAAACTAGAGCCATATG+GGG - chr1_3:4777369-4777388 Msa0098750:CDS 40.0%
GATGATTTCTTGACCCCATA+TGG + chr1_3:4777385-4777404 None:intergenic 40.0%
GAAGACGTTTCAGAGTTGCA+CGG + chr1_3:4770114-4770133 None:intergenic 45.0%
AGCAATGTTTCACGTGGTGT+TGG - chr1_3:4770274-4770293 Msa0098750:three_prime_UTR 45.0%
! AATGTTTCACGTGGTGTTGG+TGG - chr1_3:4770277-4770296 Msa0098750:three_prime_UTR 45.0%
!! TTGGTGGATTTCACGGTTCT+GGG - chr1_3:4770293-4770312 Msa0098750:three_prime_UTR 45.0%
CGTCTTGCGAATGTATCACT+TGG + chr1_3:4770361-4770380 Msa0098760:intron 45.0%
CTTCTGGTGTAGCTGAGTTA+TGG + chr1_3:4770384-4770403 Msa0098760:intron 45.0%
ATGTTCCACCAGTGATCTTG+AGG - chr1_3:4770614-4770633 Msa0098750:three_prime_UTR 45.0%
GGTGTTCTTGTTCAGTATCC+TGG - chr1_3:4770976-4770995 Msa0098750:three_prime_UTR 45.0%
! GTTCAGTATCCTGGTACTGA+AGG - chr1_3:4770985-4771004 Msa0098750:three_prime_UTR 45.0%
AAAACCTCACCTTCAGTACC+AGG + chr1_3:4770997-4771016 None:intergenic 45.0%
!! TGGTACTGAAGGTGAGGTTT+TGG - chr1_3:4770996-4771015 Msa0098750:three_prime_UTR 45.0%
GGCTCATGCTAATGAGGTTA+AGG - chr1_3:4771041-4771060 Msa0098750:three_prime_UTR 45.0%
ATATCAGCTCCAAACTCACC+AGG + chr1_3:4771111-4771130 None:intergenic 45.0%
!! TCAGAGATTCGGTGTTCCAA+TGG - chr1_3:4771146-4771165 Msa0098750:three_prime_UTR 45.0%
!! CAGAGATTCGGTGTTCCAAT+GGG - chr1_3:4771147-4771166 Msa0098750:three_prime_UTR 45.0%
!! TTCGGTGTTCCAATGGGTTA+TGG - chr1_3:4771153-4771172 Msa0098750:three_prime_UTR 45.0%
GAGTATAAGAGGATGATGCC+TGG - chr1_3:4771210-4771229 Msa0098750:three_prime_UTR 45.0%
TGAGGATGGCTATGCAAACT+AGG - chr1_3:4771277-4771296 Msa0098750:CDS 45.0%
GAGGATGGCTATGCAAACTA+GGG - chr1_3:4771278-4771297 Msa0098750:CDS 45.0%
!! TGCTAGTAGCCTTATCCCTA+CGG + chr1_3:4771314-4771333 None:intergenic 45.0%
TAGCAACATTTGCACTGCTC+AGG - chr1_3:4771329-4771348 Msa0098750:intron 45.0%
TGTGTGTGTGTGTGTGAGAT+AGG - chr1_3:4771431-4771450 Msa0098750:intron 45.0%
AAGATCCGATTGGACACACA+AGG + chr1_3:4771589-4771608 None:intergenic 45.0%
ATCTCAGTCGAAGATCCGAT+TGG + chr1_3:4771599-4771618 None:intergenic 45.0%
! TTAGGCACTGCTTGCAAACA+TGG - chr1_3:4771790-4771809 Msa0098750:intron 45.0%
GCTGTATATCATGGACCTGA+AGG - chr1_3:4771824-4771843 Msa0098750:intron 45.0%
!! GCAATAGCTTTAAGGCCTTC+AGG + chr1_3:4771842-4771861 None:intergenic 45.0%
GCTATTGCACAAAGGGTTCA+TGG - chr1_3:4771854-4771873 Msa0098750:CDS 45.0%
ACTTGGAACAGTGGAAGTTC+AGG - chr1_3:4771910-4771929 Msa0098750:CDS 45.0%
ACAGTGGAAGTTCAGGATCT+TGG - chr1_3:4771917-4771936 Msa0098750:intron 45.0%
AGCAGCATCTGCAATTGCTT+TGG + chr1_3:4771978-4771997 None:intergenic 45.0%
! GATCCTAAATTGGCTCCGTT+TGG - chr1_3:4772231-4772250 Msa0098750:intron 45.0%
! GGCTTTAGTTGCCTTACACA+TGG + chr1_3:4772305-4772324 None:intergenic 45.0%
! TGTTGGTAGGCTCAAAGTGA+TGG + chr1_3:4772326-4772345 None:intergenic 45.0%
GTCTCCCTAACTAATCCAGA+AGG + chr1_3:4772723-4772742 None:intergenic 45.0%
TCAACAACTCGTGCTCAGTT+TGG + chr1_3:4772874-4772893 None:intergenic 45.0%
ATCCAAGTGGGATCATACTG+TGG + chr1_3:4772937-4772956 None:intergenic 45.0%
CTGAAATGATGCCTGTGACA+TGG - chr1_3:4772984-4773003 Msa0098750:intron 45.0%
! CCTGTTCAGTTGGTGCAAAA+GGG + chr1_3:4773030-4773049 None:intergenic 45.0%
TAACCTTGAGCCTGTTCAGT+TGG + chr1_3:4773040-4773059 None:intergenic 45.0%
ATCCAGTGATGGTACACAAC+AGG + chr1_3:4773479-4773498 None:intergenic 45.0%
TGGAGAATATGCTGGACTCA+TGG - chr1_3:4773536-4773555 Msa0098750:CDS 45.0%
GTATAATGCAGACATTGCGG+TGG + chr1_3:4773939-4773958 None:intergenic 45.0%
ACCATAGGAACTGATGCCAA+GGG - chr1_3:4774018-4774037 Msa0098750:CDS 45.0%
TGGCACCATCCATGTATACT+TGG + chr1_3:4774301-4774320 None:intergenic 45.0%
TTTGTGTTAGGCCAAGAGTC+TGG - chr1_3:4774369-4774388 Msa0098750:intron 45.0%
TTAAGTCCTCCGGTTCTTAG+AGG - chr1_3:4774478-4774497 Msa0098750:intron 45.0%
! TTTTGCATTCCTCATGGAGG+AGG - chr1_3:4774595-4774614 Msa0098750:CDS 45.0%
ACAGGGTGTGAGGGTAAAAA+TGG + chr1_3:4774664-4774683 None:intergenic 45.0%
! ATTTTTACCCTCACACCCTG+TGG - chr1_3:4774663-4774682 Msa0098750:intron 45.0%
!! GCTATAATGAAGGTGCCAAC+TGG - chr1_3:4774869-4774888 Msa0098750:intron 45.0%
!! ATAATGAAGGTGCCAACTGG+TGG - chr1_3:4774872-4774891 Msa0098750:intron 45.0%
! CCAAGTGGTTGAGCATTTTC+AGG + chr1_3:4774908-4774927 None:intergenic 45.0%
CCTGAAAATGCTCAACCACT+TGG - chr1_3:4774905-4774924 Msa0098750:intron 45.0%
TAGTATCTCAGCTGCACCTT+GGG - chr1_3:4774928-4774947 Msa0098750:intron 45.0%
!! ATAGCCATGATGGGTTCCAA+AGG - chr1_3:4774986-4775005 Msa0098750:intron 45.0%
! TATTACCCGGTTCTTTTCCG+TGG - chr1_3:4775169-4775188 Msa0098750:intron 45.0%
TTGACTCCACGGAAAAGAAC+CGG + chr1_3:4775178-4775197 None:intergenic 45.0%
! GTTCTTTTCCGTGGAGTCAA+CGG - chr1_3:4775178-4775197 Msa0098750:intron 45.0%
GCCTACTGAAAGTGAAAGCA+AGG - chr1_3:4775438-4775457 Msa0098750:intron 45.0%
AGAATAGTACAGCAGGTCTG+TGG + chr1_3:4775765-4775784 None:intergenic 45.0%
ATAAGGGCCAAAATGGAGGT+GGG + chr1_3:4775934-4775953 None:intergenic 45.0%
GCAGGGACTGTATGATGAAT+AGG + chr1_3:4776345-4776364 None:intergenic 45.0%
GGTGAGATGGATATGAGTTG+TGG + chr1_3:4776454-4776473 None:intergenic 45.0%
!! TGGTTCTGTTTCTGTTTCGG+TGG - chr1_3:4776721-4776740 Msa0098750:intron 45.0%
ATTACTGCCTCTTGGTTGGA+TGG - chr1_3:4776746-4776765 Msa0098750:intron 45.0%
AACTCAACCATCCAACCAAG+AGG + chr1_3:4776756-4776775 None:intergenic 45.0%
TCTTGGTTGGATGGTTGAGT+TGG - chr1_3:4776755-4776774 Msa0098750:CDS 45.0%
CTTGGTTGGATGGTTGAGTT+GGG - chr1_3:4776756-4776775 Msa0098750:CDS 45.0%
TTCCTAATGCAAAAGGGCAG+TGG - chr1_3:4776792-4776811 Msa0098750:CDS 45.0%
TCCTAATGCAAAAGGGCAGT+GGG - chr1_3:4776793-4776812 Msa0098750:CDS 45.0%
TGCATAATTATGGAGAGCCG+TGG - chr1_3:4776858-4776877 Msa0098750:CDS 45.0%
TGCAAGCAACAATGCTACCA+CGG + chr1_3:4776878-4776897 None:intergenic 45.0%
AAGGTGGAAAATGTGTGGAG+TGG - chr1_3:4776962-4776981 Msa0098750:intron 45.0%
AGTAGCCCTATTCTCCAGTT+AGG - chr1_3:4777123-4777142 Msa0098750:CDS 45.0%
! ATGATAACCATGGTGGGGAA+TGG + chr1_3:4777329-4777348 None:intergenic 45.0%
!!! TTATTTTATTTAATCATTAT+AGG - chr1_3:4772846-4772865 Msa0098750:CDS 5.0%
!!! ATTTATTTATTTTTTTATGA+AGG + chr1_3:4777230-4777249 None:intergenic 5.0%
!! CGTGGTGTTGGTGGATTTCA+CGG - chr1_3:4770286-4770305 Msa0098750:three_prime_UTR 50.0%
!! GTTGGTGGATTTCACGGTTC+TGG - chr1_3:4770292-4770311 Msa0098750:three_prime_UTR 50.0%
! GTATCCTGGTACTGAAGGTG+AGG - chr1_3:4770990-4771009 Msa0098750:three_prime_UTR 50.0%
TTGACTGTGTTGAAGCCTCC+TGG - chr1_3:4771090-4771109 Msa0098750:three_prime_UTR 50.0%
TTGAAGCCTCCTGGTGAGTT+TGG - chr1_3:4771099-4771118 Msa0098750:three_prime_UTR 50.0%
!! GTTGGTTCGGCTCAGAGATT+CGG - chr1_3:4771135-4771154 Msa0098750:three_prime_UTR 50.0%
!! GGTGTTCCAATGGGTTATGG+TGG - chr1_3:4771156-4771175 Msa0098750:three_prime_UTR 50.0%
TGAGGACCACCATAACCCAT+TGG + chr1_3:4771165-4771184 None:intergenic 50.0%
!! TGGTCCTCATGCTGCTTTCT+TGG - chr1_3:4771176-4771195 Msa0098750:three_prime_UTR 50.0%
GTAGCCAAGAAAGCAGCATG+AGG + chr1_3:4771183-4771202 None:intergenic 50.0%
! CTTCTGGAAAGCCAGCTTTG+AGG - chr1_3:4771259-4771278 Msa0098750:exon 50.0%
!! TGGAAAGCCAGCTTTGAGGA+TGG - chr1_3:4771263-4771282 Msa0098750:exon 50.0%
TGCATAGCCATCCTCAAAGC+TGG + chr1_3:4771273-4771292 None:intergenic 50.0%
TAGGGAGCAGCATATCCGTA+GGG - chr1_3:4771296-4771315 Msa0098750:intron 50.0%
GCAGCATATCCGTAGGGATA+AGG - chr1_3:4771302-4771321 Msa0098750:intron 50.0%
! CAAAGGGTTCATGGTCTTGC+TGG - chr1_3:4771863-4771882 Msa0098750:CDS 50.0%
GTCCATCCACTATCAGCTGA+GGG + chr1_3:4772459-4772478 None:intergenic 50.0%
AGTCCATCCACTATCAGCTG+AGG + chr1_3:4772460-4772479 None:intergenic 50.0%
TACGATGGCTATGTTTGGCG+AGG + chr1_3:4772591-4772610 None:intergenic 50.0%
TGCCACAGTATGATCCCACT+TGG - chr1_3:4772932-4772951 Msa0098750:CDS 50.0%
GTAAAGCTAGGCCATGTCAC+AGG + chr1_3:4772998-4773017 None:intergenic 50.0%
! CCCTTTTGCACCAACTGAAC+AGG - chr1_3:4773027-4773046 Msa0098750:intron 50.0%
! GCCTGTTCAGTTGGTGCAAA+AGG + chr1_3:4773031-4773050 None:intergenic 50.0%
TGAACAGGCTCAAGGTTACC+AGG - chr1_3:4773042-4773061 Msa0098750:intron 50.0%
GACCTGTTGTGTACCATCAC+TGG - chr1_3:4773474-4773493 Msa0098750:CDS 50.0%
TAATGCAGACATTGCGGTGG+TGG + chr1_3:4773936-4773955 None:intergenic 50.0%
TTGGTACCATGTGCTGAGAC+TGG + chr1_3:4773961-4773980 None:intergenic 50.0%
CACCATAGGAACTGATGCCA+AGG - chr1_3:4774017-4774036 Msa0098750:CDS 50.0%
TCCCTTGGCATCAGTTCCTA+TGG + chr1_3:4774022-4774041 None:intergenic 50.0%
GAAGGCTGCTGAAACACACA+AGG - chr1_3:4774065-4774084 Msa0098750:intron 50.0%
GGAGGCCAAGTATACATGGA+TGG - chr1_3:4774293-4774312 Msa0098750:intron 50.0%
! TGGTGCCAACATGAATGCAC+AGG - chr1_3:4774313-4774332 Msa0098750:intron 50.0%
GTTAGGCCAAGAGTCTGGAA+AGG - chr1_3:4774374-4774393 Msa0098750:intron 50.0%
! CTCTTTCCTCTAAGAACCGG+AGG + chr1_3:4774487-4774506 None:intergenic 50.0%
! CTTACAAGCCCAGGTTGGAT+TGG - chr1_3:4774538-4774557 Msa0098750:CDS 50.0%
CATCTGCTCCAATCCAACCT+GGG + chr1_3:4774549-4774568 None:intergenic 50.0%
ACATCTGCTCCAATCCAACC+TGG + chr1_3:4774550-4774569 None:intergenic 50.0%
CTACTTACCACAGGGTGTGA+GGG + chr1_3:4774673-4774692 None:intergenic 50.0%
ACTACTTACCACAGGGTGTG+AGG + chr1_3:4774674-4774693 None:intergenic 50.0%
GCAGCTGAGATACTACCAAG+TGG + chr1_3:4774923-4774942 None:intergenic 50.0%
GTAGTATCTCAGCTGCACCT+TGG - chr1_3:4774927-4774946 Msa0098750:intron 50.0%
AGTATCTCAGCTGCACCTTG+GGG - chr1_3:4774929-4774948 Msa0098750:intron 50.0%
!! AATATGAGCGCTGATCCCCA+AGG + chr1_3:4774947-4774966 None:intergenic 50.0%
!! GAGTCCTTTGGAACCCATCA+TGG + chr1_3:4774993-4775012 None:intergenic 50.0%
CTACATGGCGAAACGATTGG+AGG - chr1_3:4775048-4775067 Msa0098750:intron 50.0%
TGACTCCACGGAAAAGAACC+GGG + chr1_3:4775177-4775196 None:intergenic 50.0%
!! CACATGTTCCGTTGACTCCA+CGG + chr1_3:4775189-4775208 None:intergenic 50.0%
AGACGCTTCGCAACATCTTC+AGG + chr1_3:4775355-4775374 None:intergenic 50.0%
! AGATGTTGCGAAGCGTCTCA+TGG - chr1_3:4775357-4775376 Msa0098750:intron 50.0%
ATCATGAGTGTACCAGGCAC+AGG + chr1_3:4775415-4775434 None:intergenic 50.0%
GGCTCAATCATGAGTGTACC+AGG + chr1_3:4775421-4775440 None:intergenic 50.0%
AACATCGTTGCAGGCTGAGT+TGG - chr1_3:4775562-4775581 Msa0098750:CDS 50.0%
TCACTCTGCTGTCAGAGACA+CGG + chr1_3:4775742-4775761 None:intergenic 50.0%
TAAGGGCCAAAATGGAGGTG+GGG + chr1_3:4775933-4775952 None:intergenic 50.0%
GATAAGGGCCAAAATGGAGG+TGG + chr1_3:4775935-4775954 None:intergenic 50.0%
CTTCAACAGCCTGTGATGCT+GGG + chr1_3:4776249-4776268 None:intergenic 50.0%
TCTTCAACAGCCTGTGATGC+TGG + chr1_3:4776250-4776269 None:intergenic 50.0%
! TCCACGAGGGTACACTTAGA+CGG + chr1_3:4776696-4776715 None:intergenic 50.0%
GGACATTACTGCCTCTTGGT+TGG - chr1_3:4776742-4776761 Msa0098750:intron 50.0%
!! TTGGATGGTTGAGTTGGGTG+TGG - chr1_3:4776761-4776780 Msa0098750:CDS 50.0%
! ACCCACTGCCCTTTTGCATT+AGG + chr1_3:4776797-4776816 None:intergenic 50.0%
! GTGATTTGGGGATTGCAAGG+TGG - chr1_3:4776946-4776965 Msa0098750:intron 50.0%
! AATGTGTGGAGTGGAGTGTC+CGG - chr1_3:4776971-4776990 Msa0098750:intron 50.0%
TTAACAAACTCCACCACCCC+CGG + chr1_3:4776993-4777012 None:intergenic 50.0%
TGAAGAACCATTCCCCACCA+TGG - chr1_3:4777319-4777338 Msa0098750:CDS 50.0%
TCAGCTCCAAACTCACCAGG+AGG + chr1_3:4771108-4771127 None:intergenic 55.0%
CTAGGGAGCAGCATATCCGT+AGG - chr1_3:4771295-4771314 Msa0098750:intron 55.0%
ATCCACTATCAGCTGAGGGC+CGG + chr1_3:4772455-4772474 None:intergenic 55.0%
GCACCAACTGAACAGGCTCA+AGG - chr1_3:4773034-4773053 Msa0098750:intron 55.0%
!! TATGAGACGGAGGGAGTACC+TGG + chr1_3:4773063-4773082 None:intergenic 55.0%
!! CAACCAAATGCTGGTGCTGC+TGG - chr1_3:4773516-4773535 Msa0098750:CDS 55.0%
TCTCCAGCAGCACCAGCATT+TGG + chr1_3:4773522-4773541 None:intergenic 55.0%
!! GGTGCTGCTGGAGAATATGC+TGG - chr1_3:4773528-4773547 Msa0098750:CDS 55.0%
CATAGCGGCACTAGCAGGAT+TGG + chr1_3:4773980-4773999 None:intergenic 55.0%
TGGGACTTACAAGCCCAGGT+TGG - chr1_3:4774533-4774552 Msa0098750:CDS 55.0%
TGCATTCCTCATGGAGGAGG+TGG - chr1_3:4774598-4774617 Msa0098750:CDS 55.0%
CACCAATAGGACCCATGCCA+GGG + chr1_3:4774624-4774643 None:intergenic 55.0%
ACACCAATAGGACCCATGCC+AGG + chr1_3:4774625-4774644 None:intergenic 55.0%
!! GCTGTTTTGTGCGTTGAGCG+TGG + chr1_3:4774778-4774797 None:intergenic 55.0%
!! GGTTGAGCATTTTCAGGGGC+AGG + chr1_3:4774902-4774921 None:intergenic 55.0%
TGACGCGTCAGTGAGTCCTT+TGG + chr1_3:4775005-4775024 None:intergenic 55.0%
! GCGAAGCGTCTCATGGACTA+TGG - chr1_3:4775364-4775383 Msa0098750:intron 55.0%
GGCACAGGCCATGACATTGT+TGG + chr1_3:4775400-4775419 None:intergenic 55.0%
ACAATGTCATGGCCTGTGCC+TGG - chr1_3:4775400-4775419 Msa0098750:intron 55.0%
! CGTTGCAGGCTGAGTTGGAT+AGG - chr1_3:4775567-4775586 Msa0098750:CDS 55.0%
CACTCTGCTGTCAGAGACAC+GGG + chr1_3:4775741-4775760 None:intergenic 55.0%
! CATGCACCCCACCTCCATTT+TGG - chr1_3:4775924-4775943 Msa0098750:intron 55.0%
! GAAGGGTGCAGATCAGGTTG+CGG + chr1_3:4776225-4776244 None:intergenic 55.0%
AGCCTGTGATGCTGGGAGAA+GGG + chr1_3:4776242-4776261 None:intergenic 55.0%
GGGTACACTTAGACGGAGGA+AGG + chr1_3:4776689-4776708 None:intergenic 55.0%
! ACGAGGGTACACTTAGACGG+AGG + chr1_3:4776693-4776712 None:intergenic 55.0%
TCCGTCTAAGTGTACCCTCG+TGG - chr1_3:4776692-4776711 Msa0098750:CDS 55.0%
GTCTAAGTGTACCCTCGTGG+AGG - chr1_3:4776695-4776714 Msa0098750:CDS 55.0%
CAGAACCAGAACCTCCACGA+GGG + chr1_3:4776709-4776728 None:intergenic 55.0%
ACAGAACCAGAACCTCCACG+AGG + chr1_3:4776710-4776729 None:intergenic 55.0%
CGGTGGACATTACTGCCTCT+TGG - chr1_3:4776738-4776757 Msa0098750:intron 55.0%
!! GATGGTTGAGTTGGGTGTGG+TGG - chr1_3:4776764-4776783 Msa0098750:CDS 55.0%
! GCAAAAGGGCAGTGGGTTTG+TGG - chr1_3:4776800-4776819 Msa0098750:CDS 55.0%
! ATGTGTGGAGTGGAGTGTCC+GGG - chr1_3:4776972-4776991 Msa0098750:intron 55.0%
! GGATGGCTGGCCCATGTGTA+AGG - chr1_3:4772291-4772310 Msa0098750:CDS 60.0%
!! GGCCCTCAGCTGATAGTGGA+TGG - chr1_3:4772454-4772473 Msa0098750:CDS 60.0%
CCACACATAGCGGCACTAGC+AGG + chr1_3:4773985-4774004 None:intergenic 60.0%
! CCTGCTAGTGCCGCTATGTG+TGG - chr1_3:4773982-4774001 Msa0098750:CDS 60.0%
CAGGTGGGACTTACAAGCCC+AGG - chr1_3:4774529-4774548 Msa0098750:CDS 60.0%
! ATAGTGCGTTGACCCGTGCG+AGG - chr1_3:4774725-4774744 Msa0098750:intron 60.0%
AATCTCACCCGTGCCTCGCA+CGG + chr1_3:4774741-4774760 None:intergenic 60.0%
GGGGCAGGAATTCCACCAGT+TGG + chr1_3:4774887-4774906 None:intergenic 60.0%
! CTGGGAGAAGGGTGCAGATC+AGG + chr1_3:4776231-4776250 None:intergenic 60.0%
CACCCTTCTCCCAGCATCAC+AGG - chr1_3:4776237-4776256 Msa0098750:CDS 60.0%
CAGCCTGTGATGCTGGGAGA+AGG + chr1_3:4776243-4776262 None:intergenic 60.0%
GTGTACCCTCGTGGAGGTTC+TGG - chr1_3:4776701-4776720 Msa0098750:intron 60.0%
! TGTGTGGAGTGGAGTGTCCG+GGG - chr1_3:4776973-4776992 Msa0098750:intron 60.0%
GGCCCTGGCATGGGTCCTAT+TGG - chr1_3:4774619-4774638 Msa0098750:CDS 65.0%
ATCTCACCCGTGCCTCGCAC+GGG + chr1_3:4774740-4774759 None:intergenic 65.0%
! GTGTGGAGTGGAGTGTCCGG+GGG - chr1_3:4776974-4776993 Msa0098750:intron 65.0%
GGCCGGCCCTCAGCTGATAG+TGG - chr1_3:4772450-4772469 Msa0098750:CDS 70.0%
CCAGGGCCACCTCCTCCATG+AGG + chr1_3:4774607-4774626 None:intergenic 70.0%
CCTCATGGAGGAGGTGGCCC+TGG - chr1_3:4774604-4774623 Msa0098750:CDS 70.0%
TGGAGGAGGTGGCCCTGGCA+TGG - chr1_3:4774609-4774628 Msa0098750:CDS 70.0%
GGAGGAGGTGGCCCTGGCAT+GGG - chr1_3:4774610-4774629 Msa0098750:CDS 70.0%
! GCGTTGACCCGTGCGAGGCA+CGG - chr1_3:4774730-4774749 Msa0098750:intron 70.0%
CGTTGACCCGTGCGAGGCAC+GGG - chr1_3:4774731-4774750 Msa0098750:intron 70.0%
! TGGAGTGGAGTGTCCGGGGG+TGG - chr1_3:4776977-4776996 Msa0098750:intron 70.0%
! AGTGGAGTGTCCGGGGGTGG+TGG - chr1_3:4776980-4776999 Msa0098750:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4770085 4777421 4770085 ID=Msa0098750;Name=Msa0098750
chr1_3 mRNA 4770085 4777421 4770085 ID=Msa0098750-mRNA-1;Parent=Msa0098750;Name=Msa0098750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.66|0.63|1|0.66|0.68|19|1189|907
chr1_3 exon 4770085 4771309 4770085 ID=Msa0098750-mRNA-1:exon:1689;Parent=Msa0098750-mRNA-1
chr1_3 exon 4771833 4771931 4771833 ID=Msa0098750-mRNA-1:exon:1688;Parent=Msa0098750-mRNA-1
chr1_3 exon 4772047 4772172 4772047 ID=Msa0098750-mRNA-1:exon:1687;Parent=Msa0098750-mRNA-1
chr1_3 exon 4772263 4772340 4772263 ID=Msa0098750-mRNA-1:exon:1686;Parent=Msa0098750-mRNA-1
chr1_3 exon 4772437 4772625 4772437 ID=Msa0098750-mRNA-1:exon:1685;Parent=Msa0098750-mRNA-1
chr1_3 exon 4772822 4772974 4772822 ID=Msa0098750-mRNA-1:exon:1684;Parent=Msa0098750-mRNA-1
chr1_3 exon 4773172 4773285 4773172 ID=Msa0098750-mRNA-1:exon:1683;Parent=Msa0098750-mRNA-1
chr1_3 exon 4773399 4773584 4773399 ID=Msa0098750-mRNA-1:exon:1682;Parent=Msa0098750-mRNA-1
chr1_3 exon 4773928 4774053 4773928 ID=Msa0098750-mRNA-1:exon:1681;Parent=Msa0098750-mRNA-1
chr1_3 exon 4774509 4774638 4774509 ID=Msa0098750-mRNA-1:exon:1680;Parent=Msa0098750-mRNA-1
chr1_3 exon 4774734 4774834 4774734 ID=Msa0098750-mRNA-1:exon:1679;Parent=Msa0098750-mRNA-1
chr1_3 exon 4775285 4775362 4775285 ID=Msa0098750-mRNA-1:exon:1678;Parent=Msa0098750-mRNA-1
chr1_3 exon 4775467 4775712 4775467 ID=Msa0098750-mRNA-1:exon:1677;Parent=Msa0098750-mRNA-1
chr1_3 exon 4776156 4776401 4776156 ID=Msa0098750-mRNA-1:exon:1676;Parent=Msa0098750-mRNA-1
chr1_3 exon 4776411 4776499 4776411 ID=Msa0098750-mRNA-1:exon:1675;Parent=Msa0098750-mRNA-1
chr1_3 exon 4776509 4776718 4776509 ID=Msa0098750-mRNA-1:exon:1674;Parent=Msa0098750-mRNA-1
chr1_3 exon 4776755 4776932 4776755 ID=Msa0098750-mRNA-1:exon:1673;Parent=Msa0098750-mRNA-1
chr1_3 exon 4777041 4777156 4777041 ID=Msa0098750-mRNA-1:exon:1672;Parent=Msa0098750-mRNA-1
chr1_3 exon 4777199 4777421 4777199 ID=Msa0098750-mRNA-1:exon:1671;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4777199 4777421 4777199 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4777041 4777156 4777041 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4776755 4776932 4776755 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4776509 4776718 4776509 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4776411 4776499 4776411 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4776156 4776401 4776156 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4775467 4775712 4775467 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4775285 4775362 4775285 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4774734 4774834 4774734 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4774509 4774638 4774509 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4773928 4774053 4773928 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4773399 4773584 4773399 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4773172 4773285 4773172 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4772822 4772974 4772822 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4772437 4772625 4772437 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4772263 4772340 4772263 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4772047 4772172 4772047 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4771833 4771931 4771833 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 CDS 4771274 4771309 4771274 ID=Msa0098750-mRNA-1:cds;Parent=Msa0098750-mRNA-1
chr1_3 three_prime_UTR 4770085 4771273 4770085 ID=Msa0098750-mRNA-1:three_prime_utr;Parent=Msa0098750-mRNA-1
Gene Sequence

>Msa0098750

ATGGAACGTGCAAGAAGACTCGCAAACCGTGCAACTCTGAAACGTCTTCTTTCAGAGGCAAAGCAGAATTGTAAGAACGAATCAACAACAACAACAGCACCTCTTCCATTTTCATCTTCATCAAGATATGTTTCCTCTGTTTCAAACTCTGTTTTCAGAAACAGAGGATCCAACGTTTTTGGAAGAAACAGCAATGTTTCACGTGGTGTTGGTGGATTTCACGCTTTGAAACCAAGTGATACATTCGCAAGACGCCATAACTCAGCTACACCAGAAGAACAAACAAAAATGGCTGAATCATGTGGTTTTGATCATCTTGATTCACTTGTTGATGCAACAGTTTTCAAATCTTTCATTGGTATGGGATACTATAACACACATGTTCCACCAGTGATCTTGAGGAATATTTTGGAGAATCCAGCTTGGTATACTCAGTATACACCTTATCAAGCTGAGATTTCGCAAGGTCGTCTTGAATCGTTGTTGAATTTTCAAACCTTGATTACTGATCTCACTGGTACTGCTGCAGCTGAAGCAATGTCTATGTGTAATAATATTCAAAAGGGTAAGAAGAAGACTTTTATTATTGCTAGTAATTGTCATCCACAGACTATTGATATATGTAAGACGAGAGCTGATGGATTTGAGCTTAAGGTTGTGGTGAAAGATCTTAAGGATATTGATTACAAATCTGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCTGGTGAGGTTTTGGATTATGGTGAGTTTATTAAGAAGGCTCATGCTAATGAGGTTAAGGTGGTTATGGCAAGTGATCTATTGGCATTGACTCCTCCTGGTGAGTTTGGAGCTGATATTGTTGTTGGTTCGGCTCAGAGATTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGAAGAATCATTGGTGTTAGTGTTGATTCTTCTGGAAAGCCAGCTTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATCCGTAGGGATAAGGCTACTAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAGCTATTGCACAAAGGGTTCATGGTCTTGCTGGTGTATTTGCTTTGGGACTAAAGAAACTTGGAACAGTGGAAGTTCAGGATCTTGGCTTCTTTGATACTGTGAAGGTTAAGACTTCAAATGCCAAAGCAATTGCAGATGCTGCTGTCAAAAGTGAAATCAATTTGAGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACTACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGCAAACCTGTCTCATTCACAGCTGCATCTCTTGCACCAGAATTTCAGAATGCAATTCCTTCTGGATTAGTTAGGGAGACTCCTTATTTGACACACCCTATCTTTAACACGTACCAAACTGAGCACGAGTTGTTGAGATACATTCATAGGCTACAATCAAAAGATCTCTCACTTTGCCACAGTATGATCCCACTTGGATCCTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGAAATGTTCGACAATTTGGGTGACCTGTTGTGTACCATCACTGGATTTGATTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTCATGGTTATTCGTGCATATCATATGTCAAGAGGTGACCACCACCGCAATGTCTGCATTATACCAGTCTCAGCACATGGTACCAATCCTGCTAGTGCCGCTATGTGTGGAATGAAAATTGTCACCATAGGAACTGATGCCAAGGGAAACATTAACATTGAAGAGTTGAAGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCATTTATGGTTACATATCCTTCAACTCACGGTGTTTATGAAGAAGGTATTGATGATATTTGCAAGATCATCCATGATAATGGAGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGTCATCTCAATCTCCACAAGACATTTTGCATTCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCCTCACACCCTGTGGTGCCAACTGGTGGAATTCCTGCCCCTGAAAATGCTCAACCACTTGGTAGTATCTCAGCTGCACCTTGGGGATCAGCGCTCATATTGCCTATCTCTTACACATACATAGCCATGATGGGTTCCAAAGGACTCACTGACGCGTCAAAGATAGCCATTTTGAATGCAAACTACATGGCGAAACGATTGGAGAGTTATTACCCGGTTCTTTTCCGTGGAGTCAACGGAACATGTGCTCATGAGTTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCGAAGCGTCTCATGGACTATGGATTTCATGGACCAACAATGTCATGGCCTGTGCCTGGTACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTGGATAGGTTTTGTGATGCTCTCATTTCCATTAGAAAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGATGTTCACAACAATGTTCTTAAGGACGTGTTGATAATGTGTATGGTGACCGCAACCTGA
Protein sequence

>Msa0098750

MERARRLANRATLKRLLSEAKQNCKNESTTTTAPLPFSSSSRYVSSVSNSVFRNRGSNVFGRNSNVSRGVGGFHALKPSDTFARRHNSATPEEQTKMAESCGFDHLDSLVDATVFKSFIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNFQTLITDLTGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFELKVVVKDLKDIDYKSGDVCGVLVQYPGEVLDYGEFIKKAHANEVKVVMASDLLALTPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLGTVEVQDLGFFDTVKVKTSNAKAIADAAVKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPSGLVRETPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPEMFDNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVTIGTDAKGNINIEELKKAAETHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENAQPLGSISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAEIEKGNADVHNNVLKDVLIMCMVTAT*