AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1421510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421510 MtrunA17_Chr3g0121631 91.935 124 8 1 1 124 1 122 2.68e-73 215
Msa1421510 MtrunA17_Chr4g0061451 53.719 121 51 3 1 116 1 121 5.62e-38 129
Msa1421510 MtrunA17_Chr7g0219021 48.819 127 58 3 1 124 1 123 7.43e-36 123
Msa1421510 MtrunA17_Chr3g0086861 44.275 131 62 3 1 124 1 127 9.77e-32 116
Msa1421510 MtrunA17_Chr7g0219031 47.664 107 53 2 1 104 1 107 3.55e-29 102
Msa1421510 MtrunA17_Chr3g0119311 50.588 85 41 1 38 121 36 120 2.80e-26 95.9
Msa1421510 MtrunA17_Chr7g0266751 46.535 101 50 2 25 121 19 119 1.25e-24 91.7
Msa1421510 MtrunA17_Chr4g0035001 51.316 76 36 1 39 113 7 82 8.46e-24 90.1
Msa1421510 MtrunA17_Chr4g0035051 48.684 76 38 1 39 113 9 84 5.63e-23 86.7
Msa1421510 MtrunA17_Chr4g0031091 43.820 89 49 1 28 115 23 111 9.80e-23 85.9
Msa1421510 MtrunA17_Chr4g0035031 50.000 76 37 1 39 113 9 84 5.17e-22 86.3
Msa1421510 MtrunA17_Chr7g0263001 42.149 121 60 4 1 117 1 115 3.09e-20 80.5
Msa1421510 MtrunA17_Chr2g0278661 50.649 77 37 1 39 114 8 84 7.05e-20 82.0
Msa1421510 MtrunA17_Chr3g0116631 44.318 88 44 2 39 125 207 290 1.66e-19 81.6
Msa1421510 MtrunA17_Chr3g0116631 39.362 94 53 2 31 123 102 192 1.77e-11 59.7
Msa1421510 MtrunA17_Chr1g0181111 49.367 79 39 1 39 116 197 275 7.14e-19 79.7
Msa1421510 MtrunA17_Chr4g0042161 45.263 95 45 3 33 124 44 134 1.71e-18 75.9
Msa1421510 MtrunA17_Chr1g0198431 36.792 106 63 2 24 128 178 280 1.46e-17 76.3
Msa1421510 MtrunA17_Chr4g0058151 44.304 79 43 1 39 116 217 295 4.90e-17 75.1
Msa1421510 MtrunA17_Chr4g0058151 43.529 85 45 2 39 122 123 205 1.84e-12 62.4
Msa1421510 MtrunA17_Chr3g0101061 44.086 93 48 3 28 117 27 118 5.73e-17 75.9
Msa1421510 MtrunA17_Chr1g0168601 45.679 81 43 1 39 118 154 234 7.99e-17 73.6
Msa1421510 MtrunA17_Chr4g0050781 41.250 80 46 1 39 117 8 87 1.57e-16 72.4
Msa1421510 MtrunA17_Chr1g0210241 37.647 85 52 1 36 119 5 89 1.40e-15 70.9
Msa1421510 MtrunA17_Chr6g0449481 33.945 109 63 2 33 132 128 236 1.42e-15 71.6
Msa1421510 MtrunA17_Chr3g0110211 42.697 89 49 2 38 124 112 200 4.96e-15 70.1
Msa1421510 MtrunA17_Chr1g0201001 34.043 94 61 1 40 132 31 124 5.40e-15 70.1
Msa1421510 MtrunA17_Chr3g0144311 35.714 84 54 0 38 121 29 112 5.94e-15 69.3
Msa1421510 MtrunA17_Chr7g0276531 37.662 77 48 0 38 114 18 94 1.68e-14 67.8
Msa1421510 MtrunA17_Chr4g0070231 45.333 75 40 1 40 113 133 207 1.91e-14 68.6
Msa1421510 MtrunA17_Chr3g0088511 35.556 90 54 3 24 110 17 105 2.07e-14 65.1
Msa1421510 MtrunA17_Chr4g0038111 38.462 104 59 2 32 131 333 435 2.08e-14 68.6
Msa1421510 MtrunA17_Chr1g0186351 36.471 85 54 0 34 118 108 192 2.18e-14 68.6
Msa1421510 MtrunA17_Chr1g0186351 36.709 79 49 1 39 117 7 84 9.72e-12 60.8
Msa1421510 MtrunA17_Chr4g0017401 35.484 93 56 1 38 126 16 108 2.33e-14 67.4
Msa1421510 MtrunA17_Chr8g0344491 45.122 82 43 2 40 120 149 229 2.34e-14 68.2
Msa1421510 MtrunA17_Chr8g0346011 38.961 77 47 0 38 114 37 113 3.80e-14 67.0
Msa1421510 MtrunA17_Chr5g0447761 41.250 80 46 1 37 116 5 83 3.84e-14 67.8
Msa1421510 MtrunA17_Chr6g0481071 35.000 80 51 1 38 116 95 174 3.97e-14 65.5
Msa1421510 MtrunA17_Chr7g0267571 40.230 87 51 1 36 121 210 296 5.65e-14 67.0
Msa1421510 MtrunA17_Chr7g0267571 37.333 75 46 1 39 112 110 184 8.52e-11 58.2
Msa1421510 MtrunA17_Chr5g0430471 33.673 98 56 2 23 111 16 113 2.27e-13 62.8
Msa1421510 MtrunA17_Chr2g0290191 40.244 82 48 1 35 116 1 81 2.59e-13 65.5
Msa1421510 MtrunA17_Chr2g0290191 27.869 122 79 2 9 130 85 197 1.58e-11 60.5
Msa1421510 MtrunA17_Chr3g0127751 40.260 77 44 1 38 112 26 102 2.69e-13 64.3
Msa1421510 MtrunA17_Chr1g0163591 41.176 85 49 1 37 121 161 244 2.98e-13 65.5
Msa1421510 MtrunA17_Chr5g0426311 35.065 77 50 0 38 114 16 92 3.46e-13 64.3
Msa1421510 MtrunA17_Chr3g0135111 34.118 85 56 0 33 117 112 196 4.09e-13 64.7
Msa1421510 MtrunA17_Chr3g0135111 38.636 88 53 1 29 116 1 87 7.07e-12 61.2
Msa1421510 MtrunA17_Chr1g0153181 37.000 100 59 2 19 114 10 109 4.32e-13 64.7
Msa1421510 MtrunA17_Chr2g0327921 36.250 80 50 1 38 116 7 86 5.05e-13 60.5
Msa1421510 MtrunA17_Chr4g0042151 38.462 78 47 1 40 116 46 123 7.28e-13 62.4
Msa1421510 MtrunA17_Chr7g0268551 38.824 85 51 1 38 121 348 432 8.47e-13 63.9
Msa1421510 MtrunA17_Chr3g0139111 42.683 82 45 2 40 120 147 227 1.08e-12 63.5
Msa1421510 MtrunA17_Chr4g0065741 37.500 80 49 1 36 114 69 148 1.42e-12 61.2
Msa1421510 MtrunA17_Chr5g0419351 33.721 86 56 1 29 113 1 86 1.80e-12 60.8
Msa1421510 MtrunA17_Chr8g0360551 43.056 72 41 0 35 106 70 141 1.93e-12 62.8
Msa1421510 MtrunA17_Chr8g0375101 36.145 83 52 1 35 117 1 82 5.44e-12 61.6
Msa1421510 MtrunA17_Chr1g0153871 35.870 92 57 2 40 129 192 283 7.80e-12 61.2
Msa1421510 MtrunA17_Chr1g0177101 37.349 83 51 1 36 117 205 287 1.04e-11 60.5
Msa1421510 MtrunA17_Chr4g0045921 30.769 91 61 1 35 125 160 248 1.81e-11 60.1
Msa1421510 MtrunA17_Chr4g0045921 39.189 74 45 0 33 106 71 144 5.19e-11 58.5
Msa1421510 MtrunA17_Chr4g0018581 39.024 82 49 1 33 113 446 527 1.94e-11 60.1
Msa1421510 MtrunA17_Chr2g0328791 39.759 83 48 2 40 120 110 192 3.26e-11 59.3
Msa1421510 MtrunA17_Chr4g0044541 37.975 79 48 1 37 114 33 111 4.16e-11 59.3
Msa1421510 MtrunA17_Chr5g0402191 36.145 83 52 1 35 117 1 82 5.43e-11 58.5
Msa1421510 MtrunA17_Chr8g0383661 34.615 78 50 1 39 115 304 381 6.18e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421510 AT3G23830.2 59.350 123 45 4 1 122 1 119 1.76e-43 139
Msa1421510 AT3G23830.1 59.350 123 45 4 1 122 1 119 1.76e-43 139
Msa1421510 AT4G13850.4 62.393 117 40 3 1 116 1 114 3.75e-42 136
Msa1421510 AT4G13850.3 60.976 123 43 4 1 122 1 119 3.89e-42 136
Msa1421510 AT4G13850.2 60.976 123 43 4 1 122 1 119 5.10e-42 136
Msa1421510 AT4G13850.1 60.976 123 43 4 1 122 1 119 5.92e-42 136
Msa1421510 AT5G61030.2 56.303 119 49 2 1 116 1 119 1.97e-40 137
Msa1421510 AT5G61030.1 56.303 119 49 2 1 116 1 119 1.97e-40 137
Msa1421510 AT1G74230.1 53.913 115 49 1 1 115 1 111 9.57e-38 129
Msa1421510 AT5G47320.1 55.172 116 44 3 1 115 1 109 1.62e-32 114
Msa1421510 AT3G08000.1 58.333 84 34 1 39 121 42 125 1.12e-27 99.8
Msa1421510 AT5G06210.1 50.000 96 45 2 33 127 29 122 1.04e-23 89.7
Msa1421510 AT2G21660.2 48.684 76 38 1 39 113 9 84 1.55e-21 84.7
Msa1421510 AT2G21660.1 48.684 76 38 1 39 113 9 84 2.31e-21 84.7
Msa1421510 AT5G59865.1 48.810 84 42 1 36 118 24 107 2.66e-21 82.8
Msa1421510 AT2G37220.1 52.500 80 37 1 38 116 204 283 5.51e-21 85.9
Msa1421510 AT2G37220.1 41.860 86 43 2 39 123 92 171 3.65e-12 62.0
Msa1421510 AT4G39260.3 40.000 95 47 2 39 132 7 92 1.21e-20 80.5
Msa1421510 AT3G53460.1 50.602 83 40 1 39 120 258 340 1.50e-20 85.5
Msa1421510 AT3G53460.1 43.023 86 42 2 39 123 100 179 5.98e-11 58.9
Msa1421510 AT3G53460.3 50.602 83 40 1 39 120 258 340 1.50e-20 85.5
Msa1421510 AT3G53460.3 43.023 86 42 2 39 123 100 179 5.98e-11 58.9
Msa1421510 AT3G53460.2 50.602 83 40 1 39 120 258 340 1.50e-20 85.5
Msa1421510 AT3G53460.2 43.023 86 42 2 39 123 100 179 5.98e-11 58.9
Msa1421510 AT3G53460.4 50.602 83 40 1 39 120 279 361 1.72e-20 85.5
Msa1421510 AT1G18630.1 39.130 115 64 3 1 114 4 113 2.52e-19 79.0
Msa1421510 AT4G24770.1 47.126 87 42 2 39 124 245 328 8.70e-19 80.5
Msa1421510 AT4G24770.1 39.000 100 57 2 25 123 137 233 3.82e-12 62.4
Msa1421510 AT4G24770.2 47.126 87 42 2 39 124 245 328 8.70e-19 80.5
Msa1421510 AT4G24770.2 39.000 100 57 2 25 123 137 233 3.82e-12 62.4
Msa1421510 AT3G26420.1 45.882 85 45 1 39 122 8 92 9.64e-19 79.3
Msa1421510 AT5G50250.1 44.304 79 43 1 39 116 208 286 6.15e-18 77.8
Msa1421510 AT5G50250.1 43.678 87 45 2 38 123 113 196 1.18e-12 63.5
Msa1421510 AT2G37510.1 48.052 77 39 1 35 110 31 107 7.75e-18 74.7
Msa1421510 AT4G39260.2 40.789 76 44 1 39 113 7 82 1.36e-17 73.6
Msa1421510 AT1G60000.1 48.193 83 42 1 36 117 175 257 3.62e-17 75.5
Msa1421510 AT4G39260.1 40.789 76 44 1 39 113 7 82 3.63e-17 73.6
Msa1421510 AT4G13860.1 46.667 75 39 1 37 110 2 76 9.47e-17 70.5
Msa1421510 AT3G46020.1 42.500 80 45 1 37 115 6 85 2.36e-16 69.7
Msa1421510 AT5G54580.1 42.683 82 46 1 37 117 55 136 5.30e-16 70.1
Msa1421510 AT1G76460.1 39.535 86 49 1 38 123 24 106 8.42e-16 72.0
Msa1421510 AT3G20930.1 36.842 95 59 1 35 128 279 373 1.00e-15 72.4
Msa1421510 AT5G55550.5 43.038 79 44 1 39 117 7 84 2.61e-15 71.6
Msa1421510 AT5G55550.4 43.038 79 44 1 39 117 7 84 2.61e-15 71.6
Msa1421510 AT5G55550.9 43.038 79 44 1 39 117 7 84 2.61e-15 71.6
Msa1421510 AT5G55550.7 43.038 79 44 1 39 117 7 84 2.61e-15 71.6
Msa1421510 AT5G55550.1 43.038 79 44 1 39 117 7 84 2.61e-15 71.6
Msa1421510 AT5G55550.2 43.038 79 44 1 39 117 7 84 2.82e-15 71.2
Msa1421510 AT5G55550.3 43.038 79 44 1 39 117 7 84 2.82e-15 71.2
Msa1421510 AT5G55550.6 43.038 79 44 1 39 117 7 84 2.82e-15 71.2
Msa1421510 AT5G55550.11 43.038 79 44 1 39 117 7 84 2.82e-15 71.2
Msa1421510 AT3G52380.1 41.573 89 51 1 36 123 217 305 3.07e-15 70.9
Msa1421510 AT1G60650.2 38.000 100 57 2 37 131 11 110 5.10e-15 70.1
Msa1421510 AT1G60650.1 38.000 100 57 2 37 131 11 110 5.10e-15 70.1
Msa1421510 AT5G55550.8 45.714 70 37 1 39 108 7 75 6.52e-15 70.5
Msa1421510 AT5G55550.10 45.714 70 37 1 39 108 7 75 7.09e-15 70.5
Msa1421510 AT2G22100.1 37.778 90 56 0 33 122 158 247 8.48e-15 69.7
Msa1421510 AT1G33470.3 39.474 76 46 0 38 113 7 82 1.02e-14 68.6
Msa1421510 AT1G54080.1 44.000 75 41 1 40 113 150 224 1.13e-14 69.7
Msa1421510 AT1G33470.2 39.474 76 46 0 38 113 7 82 1.13e-14 68.6
Msa1421510 AT1G33470.1 39.474 76 46 0 38 113 7 82 1.20e-14 68.6
Msa1421510 AT2G46780.1 37.234 94 54 1 38 126 22 115 1.25e-14 69.3
Msa1421510 AT2G46780.2 37.234 94 54 1 38 126 22 115 1.25e-14 69.3
Msa1421510 AT1G22910.2 38.961 77 47 0 38 114 13 89 1.44e-14 68.2
Msa1421510 AT1G22910.1 38.961 77 47 0 38 114 13 89 1.52e-14 68.2
Msa1421510 AT3G14100.1 44.000 75 41 1 40 113 146 220 1.77e-14 68.9
Msa1421510 AT5G04280.1 39.744 78 46 1 38 114 7 84 2.05e-14 68.6
Msa1421510 AT1G20880.2 38.961 77 47 0 38 114 24 100 2.19e-14 68.2
Msa1421510 AT1G20880.3 38.961 77 47 0 38 114 24 100 2.19e-14 68.2
Msa1421510 AT1G20880.1 38.961 77 47 0 38 114 24 100 2.19e-14 68.2
Msa1421510 AT3G07810.2 41.026 78 45 1 39 116 7 83 2.46e-14 68.6
Msa1421510 AT3G07810.1 41.026 78 45 1 39 116 7 83 2.56e-14 68.6
Msa1421510 AT2G18510.1 41.573 89 50 2 38 124 112 200 3.31e-14 68.2
Msa1421510 AT1G22910.3 38.961 77 47 0 38 114 13 89 3.78e-14 67.8
Msa1421510 AT4G26650.2 42.308 78 44 1 39 116 13 89 4.05e-14 68.2
Msa1421510 AT4G26650.2 31.034 87 60 0 37 123 118 204 3.68e-11 59.7
Msa1421510 AT1G48920.1 39.000 100 56 1 37 131 296 395 4.08e-14 68.2
Msa1421510 AT1G22330.1 36.559 93 56 1 38 130 17 106 4.11e-14 67.4
Msa1421510 AT4G26650.1 42.308 78 44 1 39 116 16 92 4.14e-14 68.2
Msa1421510 AT4G26650.1 31.034 87 60 0 37 123 121 207 3.54e-11 59.7
Msa1421510 AT5G47620.1 39.759 83 49 1 34 116 2 83 5.99e-14 67.4
Msa1421510 AT5G47620.1 33.333 78 52 0 36 113 104 181 3.64e-11 59.7
Msa1421510 AT5G47620.2 39.759 83 49 1 34 116 2 83 5.99e-14 67.4
Msa1421510 AT5G47620.2 33.333 78 52 0 36 113 104 181 3.64e-11 59.7
Msa1421510 AT5G47620.5 39.759 83 49 1 34 116 2 83 5.99e-14 67.4
Msa1421510 AT5G47620.5 33.333 78 52 0 36 113 104 181 3.64e-11 59.7
Msa1421510 AT1G78260.1 36.364 77 49 0 38 114 17 93 6.09e-14 67.0
Msa1421510 AT4G13860.2 53.448 58 26 1 54 110 2 59 7.12e-14 62.4
Msa1421510 AT1G78260.2 36.364 77 49 0 38 114 17 93 9.05e-14 66.2
Msa1421510 AT4G39260.4 38.983 59 36 0 39 97 7 65 9.96e-14 63.2
Msa1421510 AT5G47620.4 53.704 54 25 0 34 87 2 55 1.11e-13 67.0
Msa1421510 AT5G47620.4 33.333 78 52 0 36 113 126 203 4.05e-11 59.7
Msa1421510 AT3G54770.3 36.364 77 49 0 38 114 17 93 2.20e-13 65.1
Msa1421510 AT3G13224.3 36.667 90 56 1 30 118 92 181 2.25e-13 65.9
Msa1421510 AT3G54770.1 36.364 77 49 0 38 114 17 93 2.43e-13 65.1
Msa1421510 AT2G27330.1 31.579 95 64 1 37 130 20 114 2.57e-13 62.4
Msa1421510 AT3G13224.2 36.667 90 56 1 30 118 101 190 2.79e-13 65.5
Msa1421510 AT3G13224.1 45.588 68 37 0 30 97 101 168 3.22e-13 64.3
Msa1421510 AT1G17640.2 34.694 98 61 2 36 131 155 251 3.62e-13 65.1
Msa1421510 AT1G17640.1 34.694 98 61 2 36 131 155 251 3.62e-13 65.1
Msa1421510 AT1G17640.3 34.694 98 61 2 36 131 155 251 3.62e-13 65.1
Msa1421510 AT2G21690.1 38.889 72 43 1 40 110 9 80 3.99e-13 62.0
Msa1421510 AT1G17370.2 44.000 75 41 1 40 113 141 215 5.26e-13 64.7
Msa1421510 AT1G17370.1 44.000 75 41 1 40 113 141 215 5.27e-13 64.7
Msa1421510 AT1G71800.1 35.443 79 49 2 40 116 11 89 7.26e-13 64.7
Msa1421510 AT4G14300.1 40.506 79 46 1 39 117 7 84 1.18e-12 63.9
Msa1421510 AT4G14300.1 34.146 82 54 0 37 118 109 190 5.22e-12 62.0
Msa1421510 AT4G14300.2 40.506 79 46 1 39 117 7 84 1.18e-12 63.9
Msa1421510 AT4G14300.2 34.146 82 54 0 37 118 109 190 5.22e-12 62.0
Msa1421510 AT4G00830.2 34.783 92 57 2 26 116 106 195 1.24e-12 63.9
Msa1421510 AT4G00830.1 34.783 92 57 2 26 116 106 195 1.24e-12 63.9
Msa1421510 AT4G00830.6 34.783 92 57 2 26 116 106 195 1.24e-12 63.9
Msa1421510 AT1G49760.1 43.590 78 43 1 37 113 44 121 1.25e-12 63.9
Msa1421510 AT1G49760.2 43.590 78 43 1 37 113 44 121 1.25e-12 63.9
Msa1421510 AT1G54080.2 41.772 79 41 2 40 113 150 228 1.29e-12 63.9
Msa1421510 AT4G00830.3 34.783 92 57 2 26 116 106 195 1.33e-12 63.9
Msa1421510 AT4G00830.5 34.783 92 57 2 26 116 106 195 1.33e-12 63.9
Msa1421510 AT2G33410.1 31.579 114 72 1 11 118 77 190 1.57e-12 63.5
Msa1421510 AT2G33410.1 37.349 83 51 1 39 121 7 88 2.34e-12 63.2
Msa1421510 AT1G01080.2 37.975 79 49 0 32 110 207 285 1.69e-12 63.2
Msa1421510 AT1G01080.1 37.975 79 49 0 32 110 206 284 1.71e-12 63.2
Msa1421510 AT5G11412.1 34.211 76 50 0 38 113 52 127 1.93e-12 61.2
Msa1421510 AT5G53720.1 36.364 77 49 0 37 113 8 84 2.63e-12 59.3
Msa1421510 AT2G37510.2 36.275 102 39 2 35 110 31 132 2.68e-12 60.8
Msa1421510 AT2G19380.1 33.333 84 56 0 33 116 403 486 2.98e-12 62.8
Msa1421510 AT4G03110.1 36.471 85 53 1 38 121 349 433 3.80e-12 62.4
Msa1421510 AT5G53680.1 34.615 78 49 1 38 113 13 90 4.84e-12 60.1
Msa1421510 AT1G73530.1 33.333 81 53 1 37 116 76 156 5.88e-12 60.1
Msa1421510 AT4G20030.1 34.286 105 60 4 26 125 31 131 7.09e-12 59.3
Msa1421510 AT1G03457.3 34.177 79 51 1 38 115 225 303 7.28e-12 61.2
Msa1421510 AT3G18610.1 39.535 86 49 2 37 122 383 465 7.30e-12 61.6
Msa1421510 AT1G47490.2 37.234 94 57 2 40 131 199 292 8.68e-12 61.2
Msa1421510 AT3G18610.3 39.535 86 49 2 37 122 353 435 1.07e-11 61.2
Msa1421510 AT1G47490.1 37.234 94 57 2 40 131 199 292 1.60e-11 60.5
Msa1421510 AT3G18610.2 39.535 86 49 2 37 122 323 405 1.64e-11 60.8
Msa1421510 AT5G51300.1 36.585 82 51 1 33 113 475 556 1.93e-11 60.5
Msa1421510 AT5G51300.2 36.585 82 51 1 33 113 475 556 1.93e-11 60.5
Msa1421510 AT5G51300.3 36.585 82 51 1 33 113 475 556 1.93e-11 60.5
Msa1421510 AT5G40490.1 32.143 84 56 1 35 117 127 210 2.79e-11 60.1
Msa1421510 AT5G47620.3 33.766 77 51 0 37 113 45 121 2.79e-11 60.1
Msa1421510 AT5G54900.1 39.506 81 47 2 40 118 156 236 2.87e-11 59.7
Msa1421510 AT3G15010.1 40.278 72 43 0 35 106 72 143 3.21e-11 59.7
Msa1421510 AT3G15010.2 40.278 72 43 0 35 106 72 143 3.21e-11 59.7
Msa1421510 AT5G40490.2 32.927 82 54 1 37 117 112 193 4.39e-11 59.3
Msa1421510 AT1G13690.1 37.333 75 46 1 40 113 15 89 4.51e-11 57.8
Msa1421510 AT3G10400.1 37.975 79 48 1 38 115 57 135 5.59e-11 58.5
Msa1421510 AT1G47500.2 36.170 94 58 2 40 131 201 294 6.08e-11 58.9
Msa1421510 AT1G47500.1 36.170 94 58 2 40 131 201 294 6.97e-11 58.9
Msa1421510 AT2G23350.1 41.667 72 40 2 40 110 136 206 7.84e-11 58.9

Find 45 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATGGACAGGATTTAAA+TGG 0.332884 tig0025081:+12704 Msa1421510:CDS
ACTGGAAGATCAAGGGGATT+TGG 0.334462 tig0025081:+12635 Msa1421510:CDS
ATGGCTTTCTATAACAAGAT+TGG 0.349854 tig0025081:+12413 Msa1421510:CDS
TGCAACTTCAGCACTCTCTA+TGG 0.384662 tig0025081:+12685 Msa1421510:CDS
CATAGGACACACGAATGTTT+CGG 0.398236 tig0025081:-12727 Msa1421510:intergenic
GAGGAGGAGCTTGAGTGCTC+TGG 0.408995 tig0025081:-12460 Msa1421510:intergenic
GTGGCTACGGCGGCGGTGGT+TGG 0.436194 tig0025081:+12786 Msa1421510:CDS
TGTTGATGATCAGTCTCTTA+AGG 0.437494 tig0025081:+12556 Msa1421510:CDS
ACCGCCGCCGTAGCCACCTC+CGG 0.442200 tig0025081:-12780 Msa1421510:intergenic
CCCGGAGGTGGCTACGGCGG+CGG 0.446676 tig0025081:+12779 Msa1421510:CDS
GGAGGTGGCTACGGCGGCGG+TGG 0.457362 tig0025081:+12782 Msa1421510:CDS
TAGTTAAGCATGGATGAAAC+AGG 0.461015 tig0025081:-12482 Msa1421510:intergenic
AGCACTCTCTATGGATGGAC+AGG 0.475981 tig0025081:+12694 Msa1421510:CDS
GGTGGACCTCGTCCCGGAGG+TGG 0.479282 tig0025081:+12767 Msa1421510:CDS
CCTCGTCCCGGAGGTGGCTA+CGG 0.490162 tig0025081:+12773 Msa1421510:CDS
GATCATCAACATGGTAAGAA+AGG 0.505312 tig0025081:-12544 Msa1421510:intergenic
CCGTAGCCACCTCCGGGACG+AGG 0.515742 tig0025081:-12773 Msa1421510:intergenic
ATAGAGACACTGGAAGATCA+AGG 0.517492 tig0025081:+12627 Msa1421510:CDS
AGGAGGAGCTTGAGTGCTCT+GGG 0.530346 tig0025081:-12459 Msa1421510:intergenic
CAGGCTGGTGGACCTCGTCC+CGG 0.532193 tig0025081:+12761 Msa1421510:CDS
AAGGATGCATTTACAACCTA+CGG 0.532917 tig0025081:+12575 Msa1421510:CDS
GGGTACCACCTTGCCTCAAG+AGG 0.543148 tig0025081:-12439 Msa1421510:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 tig0025081:+12742 Msa1421510:CDS
CCGCCGCCGTAGCCACCTCC+GGG 0.558233 tig0025081:-12779 Msa1421510:intergenic
GTTATCACTGATAGAGACAC+TGG 0.581409 tig0025081:+12617 Msa1421510:CDS
ACTTCAGCACTCTCTATGGA+TGG 0.581897 tig0025081:+12689 Msa1421510:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 tig0025081:+12746 Msa1421510:CDS
TGCCTCAACCACTTCTCCGT+AGG 0.589946 tig0025081:-12591 Msa1421510:intergenic
TAGAGACACTGGAAGATCAA+GGG 0.594765 tig0025081:+12628 Msa1421510:CDS
AGAGACACTGGAAGATCAAG+GGG 0.604078 tig0025081:+12629 Msa1421510:CDS
ATTTACAACCTACGGAGAAG+TGG 0.607456 tig0025081:+12583 Msa1421510:CDS
AGCATGGATGAAACAGGAGG+AGG 0.619418 tig0025081:-12476 Msa1421510:intergenic
AACCTACGGAGAAGTGGTTG+AGG 0.621999 tig0025081:+12589 Msa1421510:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 tig0025081:-12492 Msa1421510:intergenic
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 tig0025081:+12431 Msa1421510:CDS
CGTCCCGGAGGTGGCTACGG+CGG 0.635478 tig0025081:+12776 Msa1421510:CDS
ACAAGATTGGAAACCTCTTG+AGG 0.642885 tig0025081:+12426 Msa1421510:CDS
TGAAGTTGCAGACTCTTGAG+TGG 0.654691 tig0025081:-12672 Msa1421510:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 tig0025081:-12744 Msa1421510:intergenic
GCAAATGATAGACAGGCTGG+TGG 0.673979 tig0025081:+12749 Msa1421510:CDS
GCTGGTGGACCTCGTCCCGG+AGG 0.683775 tig0025081:+12764 Msa1421510:CDS
GGAAACCTCTTGAGGCAAGG+TGG 0.688707 tig0025081:+12434 Msa1421510:CDS
TAAGAGACTGATCATCAACA+TGG 0.702631 tig0025081:-12553 Msa1421500:intergenic
TTAAGCATGGATGAAACAGG+AGG 0.710474 tig0025081:-12479 Msa1421500:intergenic
AAAGCTTGCTTGAAGACATG+TGG 0.718559 tig0025081:-12511 Msa1421500:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATGGCTTTCTATAACAAGAT+TGG + tig0025081:12413-12432 Msa1421510:CDS 30.0%
TAGTTAAGCATGGATGAAAC+AGG - tig0025081:12485-12504 Msa1421510:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + tig0025081:12518-12537 Msa1421510:CDS 35.0%
GATCATCAACATGGTAAGAA+AGG - tig0025081:12547-12566 Msa1421510:intergenic 35.0%
TAAGAGACTGATCATCAACA+TGG - tig0025081:12556-12575 Msa1421510:intergenic 35.0%
!! TGTTGATGATCAGTCTCTTA+AGG + tig0025081:12556-12575 Msa1421510:CDS 35.0%
AAGGATGCATTTACAACCTA+CGG + tig0025081:12575-12594 Msa1421510:CDS 35.0%
ATGGATGGACAGGATTTAAA+TGG + tig0025081:12704-12723 Msa1421510:CDS 35.0%
ACAAGATTGGAAACCTCTTG+AGG + tig0025081:12426-12445 Msa1421510:CDS 40.0%
TTAAGCATGGATGAAACAGG+AGG - tig0025081:12482-12501 Msa1421510:intergenic 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - tig0025081:12514-12533 Msa1421510:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + tig0025081:12521-12540 Msa1421510:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + tig0025081:12583-12602 Msa1421510:CDS 40.0%
GTTATCACTGATAGAGACAC+TGG + tig0025081:12617-12636 Msa1421510:CDS 40.0%
ATAGAGACACTGGAAGATCA+AGG + tig0025081:12627-12646 Msa1421510:CDS 40.0%
TAGAGACACTGGAAGATCAA+GGG + tig0025081:12628-12647 Msa1421510:CDS 40.0%
CATAGGACACACGAATGTTT+CGG - tig0025081:12730-12749 Msa1421510:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + tig0025081:12742-12761 Msa1421510:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - tig0025081:12747-12766 Msa1421510:intergenic 40.0%
TATGCAAATGATAGACAGGC+TGG + tig0025081:12746-12765 Msa1421510:CDS 40.0%
ATTGGAAACCTCTTGAGGCA+AGG + tig0025081:12431-12450 Msa1421510:CDS 45.0%
AGAGACACTGGAAGATCAAG+GGG + tig0025081:12629-12648 Msa1421510:CDS 45.0%
ACTGGAAGATCAAGGGGATT+TGG + tig0025081:12635-12654 Msa1421510:CDS 45.0%
TGAAGTTGCAGACTCTTGAG+TGG - tig0025081:12675-12694 Msa1421510:intergenic 45.0%
TGCAACTTCAGCACTCTCTA+TGG + tig0025081:12685-12704 Msa1421510:CDS 45.0%
ACTTCAGCACTCTCTATGGA+TGG + tig0025081:12689-12708 Msa1421510:CDS 45.0%
AGCATGGATGAAACAGGAGG+AGG - tig0025081:12479-12498 Msa1421510:intergenic 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - tig0025081:12495-12514 Msa1421510:intergenic 50.0%
AACCTACGGAGAAGTGGTTG+AGG + tig0025081:12589-12608 Msa1421510:CDS 50.0%
AGCACTCTCTATGGATGGAC+AGG + tig0025081:12694-12713 Msa1421510:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG + tig0025081:12749-12768 Msa1421510:CDS 50.0%
GGAAACCTCTTGAGGCAAGG+TGG + tig0025081:12434-12453 Msa1421510:CDS 55.0%
AGGAGGAGCTTGAGTGCTCT+GGG - tig0025081:12462-12481 Msa1421510:intergenic 55.0%
TGCCTCAACCACTTCTCCGT+AGG - tig0025081:12594-12613 Msa1421510:intergenic 55.0%
GGGTACCACCTTGCCTCAAG+AGG - tig0025081:12442-12461 Msa1421510:intergenic 60.0%
GAGGAGGAGCTTGAGTGCTC+TGG - tig0025081:12463-12482 Msa1421510:intergenic 60.0%
! CAGGCTGGTGGACCTCGTCC+CGG + tig0025081:12761-12780 Msa1421510:CDS 70.0%
CCTCGTCCCGGAGGTGGCTA+CGG + tig0025081:12773-12792 Msa1421510:CDS 70.0%
! GCTGGTGGACCTCGTCCCGG+AGG + tig0025081:12764-12783 Msa1421510:CDS 75.0%
GGTGGACCTCGTCCCGGAGG+TGG + tig0025081:12767-12786 Msa1421510:CDS 75.0%
CCGTAGCCACCTCCGGGACG+AGG - tig0025081:12776-12795 Msa1421510:intergenic 75.0%
CGTCCCGGAGGTGGCTACGG+CGG + tig0025081:12776-12795 Msa1421510:CDS 75.0%
ACCGCCGCCGTAGCCACCTC+CGG - tig0025081:12783-12802 Msa1421510:intergenic 75.0%
GTGGCTACGGCGGCGGTGGT+TGG + tig0025081:12786-12805 Msa1421510:CDS 75.0%
! CCGCCGCCGTAGCCACCTCC+GGG - tig0025081:12782-12801 Msa1421510:intergenic 80.0%
! CCCGGAGGTGGCTACGGCGG+CGG + tig0025081:12779-12798 Msa1421510:CDS 80.0%
! GGAGGTGGCTACGGCGGCGG+TGG + tig0025081:12782-12801 Msa1421510:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0025081 gene 12413 12811 12413 ID=Msa1421510;Name=Msa1421510
tig0025081 mRNA 12413 12811 12413 ID=Msa1421510-mRNA-1;Parent=Msa1421510;Name=Msa1421510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|132
tig0025081 exon 12413 12811 12413 ID=Msa1421510-mRNA-1:exon:2154;Parent=Msa1421510-mRNA-1
tig0025081 CDS 12413 12811 12413 ID=Msa1421510-mRNA-1:cds;Parent=Msa1421510-mRNA-1
Gene Sequence

>Msa1421510

ATGGCTTTCTATAACAAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTCAAGCTCCTCCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGCCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTACGGCGGCGGTGGTTGGTGA
Protein sequence

>Msa1421510

MAFYNKIGNLLRQGGTQSTQAPPPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGW*