AlfalfaGEDB | Msa0123290

M. sativa cultivar zhongmu-4 / Msa0123290

KEGG: K02889
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01157.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123290	sp\|Q43291\|RL211_ARATH	81.098	164	31	0	1	164	1	164	3.52e-100	288

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123290	A0A2K3LGM4	100.000	164	0	0	1	164	1	164	6.06e-117	337

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027590	Msa0123290	0.835119	2.019413e-56	-8.615850e-47
Msa0086160	Msa0123290	0.824895	6.298542e-54	-8.615850e-47
Msa0114600	Msa0123290	0.818085	2.355721e-52	-8.615850e-47
Msa0123290	Msa0128330	0.806637	7.468375e-50	-8.615850e-47
Msa0123290	Msa0132460	0.845649	3.561162e-59	-8.615850e-47
Msa0123290	Msa0134580	0.819132	1.363662e-52	-8.615850e-47
Msa0123290	Msa0167860	0.846127	2.639728e-59	-8.615850e-47
Msa0123290	Msa0174580	0.801874	7.329669e-49	-8.615850e-47
Msa0123290	Msa0182050	0.847630	1.024300e-59	-8.615850e-47
Msa0123290	Msa0182100	0.854191	1.450302e-61	-8.615850e-47
Msa0123290	Msa0183840	0.811142	8.117182e-51	-8.615850e-47
Msa0123290	Msa0191550	0.804488	2.108730e-49	-8.615850e-47
Msa0123290	Msa0192300	0.836288	1.021552e-56	-8.615850e-47
Msa0123290	Msa0239420	0.802612	5.166297e-49	-8.615850e-47
Msa0123290	Msa0270160	0.823119	1.643998e-53	-8.615850e-47
Msa0123290	Msa0277600	0.871179	8.322990e-67	-8.615850e-47
Msa0123290	Msa0281370	0.800153	1.647050e-48	-8.615850e-47
Msa0123290	Msa0301250	0.832982	6.926205e-56	-8.615850e-47
Msa0123290	Msa0313060	0.847171	1.368793e-59	-8.615850e-47
Msa0123290	Msa0315430	0.810668	1.027851e-50	-8.615850e-47
Msa0123290	Msa0377370	0.825201	5.332822e-54	-8.615850e-47
Msa0123290	Msa0387290	0.802821	4.677688e-49	-8.615850e-47
Msa0123290	Msa0426940	0.838999	2.059966e-57	-8.615850e-47
Msa0123290	Msa0433060	0.807618	4.629104e-50	-8.615850e-47
Msa0123290	Msa0450150	0.829005	6.556949e-55	-8.615850e-47
Msa0123290	Msa0469430	0.804555	2.042211e-49	-8.615850e-47
Msa0123290	Msa0511760	0.808372	3.198543e-50	-8.615850e-47
Msa0123290	Msa0524680	0.808306	3.305111e-50	-8.615850e-47
Msa0123290	Msa0547920	0.860809	1.594689e-63	-8.615850e-47
Msa0123290	Msa0573550	0.866637	2.464240e-65	-8.615850e-47
Msa0123290	Msa0574780	0.827027	1.961965e-54	-8.615850e-47
Msa0123290	Msa0578010	0.813860	2.066950e-51	-8.615850e-47
Msa0123290	Msa0585570	0.841710	4.028169e-58	-8.615850e-47
Msa0123290	Msa0602900	0.872403	3.266489e-67	-8.615850e-47
Msa0123290	Msa0605890	0.833369	5.549121e-56	-8.615850e-47
Msa0123290	Msa0619230	0.816752	4.704082e-52	-8.615850e-47
Msa0123290	Msa0643960	0.868990	4.328397e-66	-8.615850e-47
Msa0123290	Msa0656450	0.826364	2.825607e-54	-8.615850e-47
Msa0123290	Msa0663400	0.848740	5.053671e-60	-8.615850e-47
Msa0123290	Msa0694400	0.834951	2.227254e-56	-8.615850e-47
Msa0123290	Msa0704860	0.827871	1.231133e-54	-8.615850e-47
Msa0123290	Msa0708630	0.846744	1.791553e-59	-8.615850e-47
Msa0123290	Msa0741510	0.800580	1.348236e-48	-8.615850e-47
Msa0123290	Msa0790450	0.800391	1.473198e-48	-8.615850e-47
Msa0123290	Msa0929700	0.864338	1.306973e-64	-8.615850e-47
Msa0123290	Msa0930360	0.809923	1.488569e-50	-8.615850e-47
Msa0123290	Msa0930790	0.808986	2.365372e-50	-8.615850e-47
Msa0123290	Msa0930890	0.826738	2.300987e-54	-8.615850e-47
Msa0123290	Msa1085850	0.824928	6.187465e-54	-8.615850e-47
Msa0123290	Msa1126690	0.835486	1.631801e-56	-8.615850e-47
Msa0123290	Msa1235950	0.850596	1.533415e-60	-8.615850e-47
Msa0123290	Msa1235980	0.852703	3.879680e-61	-8.615850e-47
Msa0123290	Msa1237040	0.823583	1.280991e-53	-8.615850e-47
Msa0123290	Msa1316100	0.824616	7.330835e-54	-8.615850e-47
Msa0123290	Msa1317390	0.833773	4.398436e-56	-8.615850e-47
Msa0123290	Msa1351020	0.862446	5.039510e-64	-8.615850e-47
Msa0123290	Msa1351910	0.821903	3.152650e-53	-8.615850e-47
Msa0123290	Msa1385480	0.838171	3.369184e-57	-8.615850e-47
Msa0123290	Msa1390760	0.818735	1.678351e-52	-8.615850e-47
Msa0123290	Msa1407550	0.843519	1.333282e-58	-8.615850e-47
Msa0123290	Msa1413570	0.830311	3.154590e-55	-8.615850e-47
Msa0123290	Msa1421510	0.829913	3.945580e-55	-8.615850e-47
Msa0123290	Msa1432310	0.829414	5.216815e-55	-8.615850e-47
Msa0123290	Msa1450560	0.801535	8.602028e-49	-8.615850e-47
Msa0123290	Msa1462580	0.804876	1.749836e-49	-8.615850e-47
Msa0123290	Msa1465700	0.831132	1.985017e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123290	MtrunA17_Chr1g0183851	100.000	164	0	0	1	164	1	164	1.17e-120	337
Msa0123290	MtrunA17_Chr7g0268461	99.390	164	1	0	1	164	1	164	1.81e-120	336

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0123290	AT1G09590.1	81.098	164	31	1	164	1	164	3.58e-101	288
Msa0123290	AT1G09690.1	81.098	164	31	1	164	1	164	3.58e-101	288
Msa0123290	AT1G57660.1	80.488	164	32	1	164	1	164	1.08e-100	286
Msa0123290	AT1G57860.1	80.488	164	32	1	164	1	164	1.08e-100	286

Find 72 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGTCGACATTAGAGTTAA+TGG	0.335175	1_3:+50286248	Msa0123290:CDS
TCCACCATGAAACCAGGTTT+GGG	0.345744	1_3:-50287471	None:intergenic
AACTCCTCAGTGCACCTTGA+TGG	0.353770	1_3:-50287360	None:intergenic
AGATCATTAACGACATCATA+TGG	0.366035	1_3:-50287525	None:intergenic
GGGGCCCTCTGGCTTGCGCT+TGG	0.369033	1_3:-50287451	None:intergenic
TTCCACCATGAAACCAGGTT+TGG	0.392778	1_3:-50287472	None:intergenic
GGGCCCCAAACCTGGTTTCA+TGG	0.399375	1_3:+50287467	Msa0123290:CDS
TTAACGACATCATATGGAAT+TGG	0.408404	1_3:-50287519	None:intergenic
CTTGTTGACTTCGACACCAA+TGG	0.410846	1_3:-50286345	None:intergenic
AAACCAGGTTTGGGGCCCTC+TGG	0.418683	1_3:-50287462	None:intergenic
CTGATATTTCATAAATTTGA+AGG	0.428221	1_3:-50287660	None:intergenic
GGAACAAGATATTGAGGAAG+AGG	0.429842	1_3:+50287310	Msa0123290:CDS
ACGGTCGTACCGGTCGTGTC+TGG	0.430669	1_3:+50286306	Msa0123290:CDS
AAGCCAGAGGGCCCCAAACC+TGG	0.445982	1_3:+50287459	Msa0123290:CDS
CTCTCCCTTGGCCTTAGCCT+CGG	0.448320	1_3:-50287418	None:intergenic
GGTGCTGATCACCTCTCCCT+TGG	0.458467	1_3:-50287430	None:intergenic
CTCTCGTCCCTTCCGCAAGA+AGG	0.461875	1_3:+50286178	Msa0123290:CDS
TGTGATTTATGAATATGCTT+GGG	0.463996	1_3:+50287762	Msa0123290:three_prime_UTR
TTCGACACCAATGGCCCGCT+TGG	0.477602	1_3:-50286336	None:intergenic
AGTCCTGAGGTAGGTGGCTA+AGG	0.478683	1_3:-50286210	None:intergenic
CACTAGGAGAAAAGAAGAAT+AGG	0.478768	1_3:-50286060	None:intergenic
AGACTGCATATTGTTGTGCT+TGG	0.479836	1_3:+50287594	Msa0123290:three_prime_UTR
CGAGGCTAAGGCCAAGGGAG+AGG	0.486454	1_3:+50287419	Msa0123290:CDS
GGGACGAGAGAATGAATCTC+TGG	0.494698	1_3:-50286165	None:intergenic
TATTGTTCCCTTCTTGCGGA+AGG	0.508429	1_3:-50286186	None:intergenic
TCAATTGAAGGCCGAGGCTA+AGG	0.510816	1_3:+50287407	Msa0123290:CDS
GATCGTAAGCCATGACCTGC+AGG	0.512467	1_3:-50286137	None:intergenic
ATGTGATTTATGAATATGCT+TGG	0.513941	1_3:+50287761	Msa0123290:three_prime_UTR
GAAAACATGCCTGCAGGTCA+TGG	0.521460	1_3:+50286128	Msa0123290:exon
AATGTCACCAAGCGGGCCAT+TGG	0.521717	1_3:+50286329	Msa0123290:CDS
AGCACCAAGCGCAAGCCAGA+GGG	0.524130	1_3:+50287447	Msa0123290:CDS
AAATTCTACCACGGTCGTAC+CGG	0.524822	1_3:+50286296	Msa0123290:CDS
GATCAAGAATGATCAATTGA+AGG	0.525684	1_3:+50287395	Msa0123290:CDS
AGGTTAGGAACAAGATATTG+AGG	0.530172	1_3:+50287304	Msa0123290:intron
CATGGTGGAAGGTGCTACAT+TGG	0.534415	1_3:+50287485	Msa0123290:CDS
ATTGTTCCCTTCTTGCGGAA+GGG	0.538504	1_3:-50286185	None:intergenic
AGAGAATGAATCTCTGGTGC+GGG	0.544173	1_3:-50286159	None:intergenic
TCTCGTCCCTTCCGCAAGAA+GGG	0.545142	1_3:+50286179	Msa0123290:CDS
TAGCCTTAGCCACCTACCTC+AGG	0.549870	1_3:+50286207	Msa0123290:CDS
GAATGATCAATTGAAGGCCG+AGG	0.551548	1_3:+50287401	Msa0123290:CDS
AGGCTATTGTTCCCTTCTTG+CGG	0.554250	1_3:-50286190	None:intergenic
GAAGAAGAAAACATGCCTGC+AGG	0.557795	1_3:+50286122	Msa0123290:exon
TGGAGCATGTTATGCCATCA+AGG	0.559210	1_3:+50287346	Msa0123290:CDS
GAAGGCCGAGGCTAAGGCCA+AGG	0.560874	1_3:+50287413	Msa0123290:CDS
TGATATTTCATAAATTTGAA+GGG	0.567429	1_3:-50287659	None:intergenic
CTGCCGCTCGAAATCACACT+AGG	0.569889	1_3:-50286076	None:intergenic
TGTCTGGAATGTCACCAAGC+GGG	0.572072	1_3:+50286322	Msa0123290:CDS
CAGCACCAAGCGCAAGCCAG+AGG	0.572201	1_3:+50287446	Msa0123290:CDS
GCACCTTCCACCATGAAACC+AGG	0.576804	1_3:-50287477	None:intergenic
AAACCTGGTTTCATGGTGGA+AGG	0.589005	1_3:+50287474	Msa0123290:CDS
GCACTGAGGAGTTCAGATTG+AGG	0.599052	1_3:+50287370	Msa0123290:CDS
GGTGACATTCCAGACACGAC+CGG	0.600537	1_3:-50286315	None:intergenic
GTGATTTATGAATATGCTTG+GGG	0.615011	1_3:+50287763	Msa0123290:three_prime_UTR
ATGGCATAACATGCTCCACT+CGG	0.618716	1_3:-50287341	None:intergenic
GAGAGAATGAATCTCTGGTG+CGG	0.619187	1_3:-50286160	None:intergenic
GATGTCGTTAATGATCTCAA+AGG	0.621805	1_3:+50287531	Msa0123290:CDS
GTTAATGGAGCTGTGCACAA+AGG	0.632022	1_3:+50286263	Msa0123290:CDS
GTCGTTAATGATCTCAAAGG+AGG	0.636972	1_3:+50287534	Msa0123290:CDS
TCTCCTAGTGTGATTTCGAG+CGG	0.638553	1_3:+50286073	Msa0123290:five_prime_UTR
AAGGCCGAGGCTAAGGCCAA+GGG	0.643263	1_3:+50287414	Msa0123290:CDS
CCACCATGAAACCAGGTTTG+GGG	0.653619	1_3:-50287470	None:intergenic
GTGTCTGGAATGTCACCAAG+CGG	0.655012	1_3:+50286321	Msa0123290:CDS
GTGATAAGTCCTGAGGTAGG+TGG	0.662852	1_3:-50286216	None:intergenic
CGACCGTGGTAGAATTTGTG+CGG	0.677873	1_3:-50286290	None:intergenic
CACCGATGTGATAAGTCCTG+AGG	0.683027	1_3:-50286223	None:intergenic
GATGTGATAAGTCCTGAGGT+AGG	0.683685	1_3:-50286219	None:intergenic
CCCCAAACCTGGTTTCATGG+TGG	0.684233	1_3:+50287470	Msa0123290:CDS
AGACACGACCGGTACGACCG+TGG	0.690324	1_3:-50286304	None:intergenic
GAAGAGGATTCATGTCCGAG+TGG	0.705446	1_3:+50287326	Msa0123290:CDS
TACCTCAGGACTTATCACAT+CGG	0.727991	1_3:+50286221	Msa0123290:CDS
ATGCCGCACAAATTCTACCA+CGG	0.741255	1_3:+50286287	Msa0123290:CDS
TATGCCATCAAGGTGCACTG+AGG	0.765204	1_3:+50287356	Msa0123290:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGATATTTCATAAATTTGAA+GGG	-	chr1_3:50287662-50287681	None:intergenic	15.0%
!!	TGATATTTCATAAATTTGAA+GGG	-	chr1_3:50287662-50287681	None:intergenic	15.0%
!!	TATTTGTAGGAACATAAAAT+GGG	-	chr1_3:50286932-50286951	None:intergenic	20.0%
!!!	ACATAAATGAAAGTATTTGT+AGG	-	chr1_3:50286945-50286964	None:intergenic	20.0%
!!!	GAAGAATTTTGTGTTAAATA+TGG	-	chr1_3:50287105-50287124	None:intergenic	20.0%
!!!	CAAAATTCTTCTAAGTTTTT+AGG	+	chr1_3:50287114-50287133	Msa0123290:intron	20.0%
!!	CTGATATTTCATAAATTTGA+AGG	-	chr1_3:50287663-50287682	None:intergenic	20.0%
!!	TATTTGTAGGAACATAAAAT+GGG	-	chr1_3:50286932-50286951	None:intergenic	20.0%
!!!	ACATAAATGAAAGTATTTGT+AGG	-	chr1_3:50286945-50286964	None:intergenic	20.0%
!!!	GAAGAATTTTGTGTTAAATA+TGG	-	chr1_3:50287105-50287124	None:intergenic	20.0%
!!!	CAAAATTCTTCTAAGTTTTT+AGG	+	chr1_3:50287114-50287133	Msa0123290:intron	20.0%
!!	CTGATATTTCATAAATTTGA+AGG	-	chr1_3:50287663-50287682	None:intergenic	20.0%
!	TTTGCTTTAGTAGTATATTC+AGG	+	chr1_3:50286586-50286605	Msa0123290:intron	25.0%
!	TCAAACAACAAAATGAATCA+AGG	-	chr1_3:50286664-50286683	None:intergenic	25.0%
!!!	TTGTTTGAGTTTTGTTTAGA+TGG	+	chr1_3:50286676-50286695	Msa0123290:intron	25.0%
!	AGTTGGAAAACAAAAACTTA+GGG	-	chr1_3:50286857-50286876	None:intergenic	25.0%
!	AAGTTGGAAAACAAAAACTT+AGG	-	chr1_3:50286858-50286877	None:intergenic	25.0%
!!	ATTCGAGTCTTTTAATAAGT+TGG	-	chr1_3:50286874-50286893	None:intergenic	25.0%
!	GAACATAAAATGGGATAAAA+TGG	-	chr1_3:50286923-50286942	None:intergenic	25.0%
!	GTATTTGTAGGAACATAAAA+TGG	-	chr1_3:50286933-50286952	None:intergenic	25.0%
!!!	CTTGACATGATGTTTTTATA+TGG	+	chr1_3:50287072-50287091	Msa0123290:intron	25.0%
!!!	AATGTTGCTATTTATGTTTC+AGG	+	chr1_3:50287284-50287303	Msa0123290:intron	25.0%
!	ATGTGATTTATGAATATGCT+TGG	+	chr1_3:50287761-50287780	Msa0123290:three_prime_UTR	25.0%
!	TGTGATTTATGAATATGCTT+GGG	+	chr1_3:50287762-50287781	Msa0123290:three_prime_UTR	25.0%
!	TTTGCTTTAGTAGTATATTC+AGG	+	chr1_3:50286586-50286605	Msa0123290:intron	25.0%
!	TCAAACAACAAAATGAATCA+AGG	-	chr1_3:50286664-50286683	None:intergenic	25.0%
!!!	TTGTTTGAGTTTTGTTTAGA+TGG	+	chr1_3:50286676-50286695	Msa0123290:intron	25.0%
!	AGTTGGAAAACAAAAACTTA+GGG	-	chr1_3:50286857-50286876	None:intergenic	25.0%
!	AAGTTGGAAAACAAAAACTT+AGG	-	chr1_3:50286858-50286877	None:intergenic	25.0%
!!	ATTCGAGTCTTTTAATAAGT+TGG	-	chr1_3:50286874-50286893	None:intergenic	25.0%
!	GAACATAAAATGGGATAAAA+TGG	-	chr1_3:50286923-50286942	None:intergenic	25.0%
!	GTATTTGTAGGAACATAAAA+TGG	-	chr1_3:50286933-50286952	None:intergenic	25.0%
!!!	CTTGACATGATGTTTTTATA+TGG	+	chr1_3:50287072-50287091	Msa0123290:intron	25.0%
!!!	AATGTTGCTATTTATGTTTC+AGG	+	chr1_3:50287284-50287303	Msa0123290:intron	25.0%
!	ATGTGATTTATGAATATGCT+TGG	+	chr1_3:50287761-50287780	Msa0123290:three_prime_UTR	25.0%
!	TGTGATTTATGAATATGCTT+GGG	+	chr1_3:50287762-50287781	Msa0123290:three_prime_UTR	25.0%
	TATGTCGACATTAGAGTTAA+TGG	+	chr1_3:50286248-50286267	Msa0123290:CDS	30.0%
	GCAAATATATGTGATGTGAT+AGG	+	chr1_3:50286478-50286497	Msa0123290:intron	30.0%
!!!	TGAGTTTTGTTTAGATGGAT+TGG	+	chr1_3:50286681-50286700	Msa0123290:intron	30.0%
	AGTAAGCTATCTTAGAGATA+AGG	-	chr1_3:50286725-50286744	None:intergenic	30.0%
!	CATATGGTTTGTCAATGAAT+TGG	-	chr1_3:50287030-50287049	None:intergenic	30.0%
!!!	CTTCTAAGTTTTTAGGTCTT+AGG	+	chr1_3:50287121-50287140	Msa0123290:intron	30.0%
	TTAATTTCCAGAGAATCTCT+TGG	+	chr1_3:50287168-50287187	Msa0123290:intron	30.0%
	AATCTCTTGGATAGAATGTA+TGG	+	chr1_3:50287181-50287200	Msa0123290:intron	30.0%
!!	TGCTATTTATGTTTCAGGTT+AGG	+	chr1_3:50287289-50287308	Msa0123290:intron	30.0%
	GATCAAGAATGATCAATTGA+AGG	+	chr1_3:50287395-50287414	Msa0123290:CDS	30.0%
	TTAACGACATCATATGGAAT+TGG	-	chr1_3:50287522-50287541	None:intergenic	30.0%
	AGATCATTAACGACATCATA+TGG	-	chr1_3:50287528-50287547	None:intergenic	30.0%
	GTGATTTATGAATATGCTTG+GGG	+	chr1_3:50287763-50287782	Msa0123290:three_prime_UTR	30.0%
	TATGTCGACATTAGAGTTAA+TGG	+	chr1_3:50286248-50286267	Msa0123290:CDS	30.0%
	GCAAATATATGTGATGTGAT+AGG	+	chr1_3:50286478-50286497	Msa0123290:intron	30.0%
!!!	TGAGTTTTGTTTAGATGGAT+TGG	+	chr1_3:50286681-50286700	Msa0123290:intron	30.0%
	AGTAAGCTATCTTAGAGATA+AGG	-	chr1_3:50286725-50286744	None:intergenic	30.0%
!	CATATGGTTTGTCAATGAAT+TGG	-	chr1_3:50287030-50287049	None:intergenic	30.0%
!!!	CTTCTAAGTTTTTAGGTCTT+AGG	+	chr1_3:50287121-50287140	Msa0123290:intron	30.0%
	TTAATTTCCAGAGAATCTCT+TGG	+	chr1_3:50287168-50287187	Msa0123290:intron	30.0%
	AATCTCTTGGATAGAATGTA+TGG	+	chr1_3:50287181-50287200	Msa0123290:intron	30.0%
!!	TGCTATTTATGTTTCAGGTT+AGG	+	chr1_3:50287289-50287308	Msa0123290:intron	30.0%
	GATCAAGAATGATCAATTGA+AGG	+	chr1_3:50287395-50287414	Msa0123290:CDS	30.0%
	TTAACGACATCATATGGAAT+TGG	-	chr1_3:50287522-50287541	None:intergenic	30.0%
	AGATCATTAACGACATCATA+TGG	-	chr1_3:50287528-50287547	None:intergenic	30.0%
	GTGATTTATGAATATGCTTG+GGG	+	chr1_3:50287763-50287782	Msa0123290:three_prime_UTR	30.0%
	CACTAGGAGAAAAGAAGAAT+AGG	-	chr1_3:50286063-50286082	None:intergenic	35.0%
!	GTTTTCTTCTTCTGCTTCTA+GGG	-	chr1_3:50286114-50286133	None:intergenic	35.0%
!	TGTTTTCTTCTTCTGCTTCT+AGG	-	chr1_3:50286115-50286134	None:intergenic	35.0%
	ATGTGATGTGATAGGTGTTA+TGG	+	chr1_3:50286486-50286505	Msa0123290:intron	35.0%
	ACAAAAACTTAGGGCATGTT+TGG	-	chr1_3:50286848-50286867	None:intergenic	35.0%
	TCCAATTTCTCACTTGGAAT+TGG	+	chr1_3:50286971-50286990	Msa0123290:intron	35.0%
	TCCAATTCCAAGTGAGAAAT+TGG	-	chr1_3:50286975-50286994	None:intergenic	35.0%
	TCATTGACAAACCATATGTG+AGG	+	chr1_3:50287032-50287051	Msa0123290:intron	35.0%
	CTCTTCAAAAACCTCACATA+TGG	-	chr1_3:50287046-50287065	None:intergenic	35.0%
	ATTCTATCCAAGAGATTCTC+TGG	-	chr1_3:50287178-50287197	None:intergenic	35.0%
	AGGTTAGGAACAAGATATTG+AGG	+	chr1_3:50287304-50287323	Msa0123290:intron	35.0%
	GATGTCGTTAATGATCTCAA+AGG	+	chr1_3:50287531-50287550	Msa0123290:CDS	35.0%
	CACTAGGAGAAAAGAAGAAT+AGG	-	chr1_3:50286063-50286082	None:intergenic	35.0%
!	GTTTTCTTCTTCTGCTTCTA+GGG	-	chr1_3:50286114-50286133	None:intergenic	35.0%
!	TGTTTTCTTCTTCTGCTTCT+AGG	-	chr1_3:50286115-50286134	None:intergenic	35.0%
	ATGTGATGTGATAGGTGTTA+TGG	+	chr1_3:50286486-50286505	Msa0123290:intron	35.0%
	ACAAAAACTTAGGGCATGTT+TGG	-	chr1_3:50286848-50286867	None:intergenic	35.0%
	TCCAATTTCTCACTTGGAAT+TGG	+	chr1_3:50286971-50286990	Msa0123290:intron	35.0%
	TCCAATTCCAAGTGAGAAAT+TGG	-	chr1_3:50286975-50286994	None:intergenic	35.0%
	TCATTGACAAACCATATGTG+AGG	+	chr1_3:50287032-50287051	Msa0123290:intron	35.0%
	CTCTTCAAAAACCTCACATA+TGG	-	chr1_3:50287046-50287065	None:intergenic	35.0%
	ATTCTATCCAAGAGATTCTC+TGG	-	chr1_3:50287178-50287197	None:intergenic	35.0%
	AGGTTAGGAACAAGATATTG+AGG	+	chr1_3:50287304-50287323	Msa0123290:intron	35.0%
	GATGTCGTTAATGATCTCAA+AGG	+	chr1_3:50287531-50287550	Msa0123290:CDS	35.0%
	TACCTCAGGACTTATCACAT+CGG	+	chr1_3:50286221-50286240	Msa0123290:CDS	40.0%
	TTAGGGCATGTTTGGATAGA+CGG	-	chr1_3:50286840-50286859	None:intergenic	40.0%
	CAAGTCTCCAATTTCTCACT+TGG	+	chr1_3:50286965-50286984	Msa0123290:intron	40.0%
	GGAACAAGATATTGAGGAAG+AGG	+	chr1_3:50287310-50287329	Msa0123290:CDS	40.0%
	GTCGTTAATGATCTCAAAGG+AGG	+	chr1_3:50287534-50287553	Msa0123290:CDS	40.0%
	AGACTGCATATTGTTGTGCT+TGG	+	chr1_3:50287594-50287613	Msa0123290:three_prime_UTR	40.0%
	TCTTAAGCAGAAGATGTGCA+AGG	+	chr1_3:50287795-50287814	Msa0123290:three_prime_UTR	40.0%
	TACCTCAGGACTTATCACAT+CGG	+	chr1_3:50286221-50286240	Msa0123290:CDS	40.0%
	TTAGGGCATGTTTGGATAGA+CGG	-	chr1_3:50286840-50286859	None:intergenic	40.0%
	CAAGTCTCCAATTTCTCACT+TGG	+	chr1_3:50286965-50286984	Msa0123290:intron	40.0%
	GGAACAAGATATTGAGGAAG+AGG	+	chr1_3:50287310-50287329	Msa0123290:CDS	40.0%
	GTCGTTAATGATCTCAAAGG+AGG	+	chr1_3:50287534-50287553	Msa0123290:CDS	40.0%
	AGACTGCATATTGTTGTGCT+TGG	+	chr1_3:50287594-50287613	Msa0123290:three_prime_UTR	40.0%
	TCTCCTAGTGTGATTTCGAG+CGG	+	chr1_3:50286073-50286092	Msa0123290:five_prime_UTR	45.0%
	GAAGAAGAAAACATGCCTGC+AGG	+	chr1_3:50286122-50286141	Msa0123290:exon	45.0%
	AGAGAATGAATCTCTGGTGC+GGG	-	chr1_3:50286162-50286181	None:intergenic	45.0%
	GAGAGAATGAATCTCTGGTG+CGG	-	chr1_3:50286163-50286182	None:intergenic	45.0%
	ATTGTTCCCTTCTTGCGGAA+GGG	-	chr1_3:50286188-50286207	None:intergenic	45.0%
	TATTGTTCCCTTCTTGCGGA+AGG	-	chr1_3:50286189-50286208	None:intergenic	45.0%
	AGGCTATTGTTCCCTTCTTG+CGG	-	chr1_3:50286193-50286212	None:intergenic	45.0%
	GATGTGATAAGTCCTGAGGT+AGG	-	chr1_3:50286222-50286241	None:intergenic	45.0%
	GTTAATGGAGCTGTGCACAA+AGG	+	chr1_3:50286263-50286282	Msa0123290:CDS	45.0%
	ATGCCGCACAAATTCTACCA+CGG	+	chr1_3:50286287-50286306	Msa0123290:CDS	45.0%
	AAATTCTACCACGGTCGTAC+CGG	+	chr1_3:50286296-50286315	Msa0123290:CDS	45.0%
!!	CTTGTTGACTTCGACACCAA+TGG	-	chr1_3:50286348-50286367	None:intergenic	45.0%
	ATGGCATAACATGCTCCACT+CGG	-	chr1_3:50287344-50287363	None:intergenic	45.0%
	TGGAGCATGTTATGCCATCA+AGG	+	chr1_3:50287346-50287365	Msa0123290:CDS	45.0%
	GAATGATCAATTGAAGGCCG+AGG	+	chr1_3:50287401-50287420	Msa0123290:CDS	45.0%
	TCCACCATGAAACCAGGTTT+GGG	-	chr1_3:50287474-50287493	None:intergenic	45.0%
	TTCCACCATGAAACCAGGTT+TGG	-	chr1_3:50287475-50287494	None:intergenic	45.0%
!	AAACCTGGTTTCATGGTGGA+AGG	+	chr1_3:50287474-50287493	Msa0123290:CDS	45.0%
	TCTCCTAGTGTGATTTCGAG+CGG	+	chr1_3:50286073-50286092	Msa0123290:five_prime_UTR	45.0%
	GAAGAAGAAAACATGCCTGC+AGG	+	chr1_3:50286122-50286141	Msa0123290:exon	45.0%
	AGAGAATGAATCTCTGGTGC+GGG	-	chr1_3:50286162-50286181	None:intergenic	45.0%
	GAGAGAATGAATCTCTGGTG+CGG	-	chr1_3:50286163-50286182	None:intergenic	45.0%
	ATTGTTCCCTTCTTGCGGAA+GGG	-	chr1_3:50286188-50286207	None:intergenic	45.0%
	TATTGTTCCCTTCTTGCGGA+AGG	-	chr1_3:50286189-50286208	None:intergenic	45.0%
	AGGCTATTGTTCCCTTCTTG+CGG	-	chr1_3:50286193-50286212	None:intergenic	45.0%
	GATGTGATAAGTCCTGAGGT+AGG	-	chr1_3:50286222-50286241	None:intergenic	45.0%
	GTTAATGGAGCTGTGCACAA+AGG	+	chr1_3:50286263-50286282	Msa0123290:CDS	45.0%
	ATGCCGCACAAATTCTACCA+CGG	+	chr1_3:50286287-50286306	Msa0123290:CDS	45.0%
	AAATTCTACCACGGTCGTAC+CGG	+	chr1_3:50286296-50286315	Msa0123290:CDS	45.0%
!!	CTTGTTGACTTCGACACCAA+TGG	-	chr1_3:50286348-50286367	None:intergenic	45.0%
	ATGGCATAACATGCTCCACT+CGG	-	chr1_3:50287344-50287363	None:intergenic	45.0%
	TGGAGCATGTTATGCCATCA+AGG	+	chr1_3:50287346-50287365	Msa0123290:CDS	45.0%
	GAATGATCAATTGAAGGCCG+AGG	+	chr1_3:50287401-50287420	Msa0123290:CDS	45.0%
	TCCACCATGAAACCAGGTTT+GGG	-	chr1_3:50287474-50287493	None:intergenic	45.0%
	TTCCACCATGAAACCAGGTT+TGG	-	chr1_3:50287475-50287494	None:intergenic	45.0%
!	AAACCTGGTTTCATGGTGGA+AGG	+	chr1_3:50287474-50287493	Msa0123290:CDS	45.0%
	GAAAACATGCCTGCAGGTCA+TGG	+	chr1_3:50286128-50286147	Msa0123290:exon	50.0%
	GGGACGAGAGAATGAATCTC+TGG	-	chr1_3:50286168-50286187	None:intergenic	50.0%
	GTGATAAGTCCTGAGGTAGG+TGG	-	chr1_3:50286219-50286238	None:intergenic	50.0%
	CACCGATGTGATAAGTCCTG+AGG	-	chr1_3:50286226-50286245	None:intergenic	50.0%
	CGACCGTGGTAGAATTTGTG+CGG	-	chr1_3:50286293-50286312	None:intergenic	50.0%
!	GTGTCTGGAATGTCACCAAG+CGG	+	chr1_3:50286321-50286340	Msa0123290:CDS	50.0%
!	TGTCTGGAATGTCACCAAGC+GGG	+	chr1_3:50286322-50286341	Msa0123290:CDS	50.0%
	GAAGAGGATTCATGTCCGAG+TGG	+	chr1_3:50287326-50287345	Msa0123290:CDS	50.0%
	TATGCCATCAAGGTGCACTG+AGG	+	chr1_3:50287356-50287375	Msa0123290:CDS	50.0%
	AACTCCTCAGTGCACCTTGA+TGG	-	chr1_3:50287363-50287382	None:intergenic	50.0%
	GCACTGAGGAGTTCAGATTG+AGG	+	chr1_3:50287370-50287389	Msa0123290:CDS	50.0%
	TCAATTGAAGGCCGAGGCTA+AGG	+	chr1_3:50287407-50287426	Msa0123290:CDS	50.0%
	CCACCATGAAACCAGGTTTG+GGG	-	chr1_3:50287473-50287492	None:intergenic	50.0%
!!	CATGGTGGAAGGTGCTACAT+TGG	+	chr1_3:50287485-50287504	Msa0123290:CDS	50.0%
	GAAAACATGCCTGCAGGTCA+TGG	+	chr1_3:50286128-50286147	Msa0123290:exon	50.0%
	GGGACGAGAGAATGAATCTC+TGG	-	chr1_3:50286168-50286187	None:intergenic	50.0%
	GTGATAAGTCCTGAGGTAGG+TGG	-	chr1_3:50286219-50286238	None:intergenic	50.0%
	CACCGATGTGATAAGTCCTG+AGG	-	chr1_3:50286226-50286245	None:intergenic	50.0%
	CGACCGTGGTAGAATTTGTG+CGG	-	chr1_3:50286293-50286312	None:intergenic	50.0%
!	GTGTCTGGAATGTCACCAAG+CGG	+	chr1_3:50286321-50286340	Msa0123290:CDS	50.0%
!	TGTCTGGAATGTCACCAAGC+GGG	+	chr1_3:50286322-50286341	Msa0123290:CDS	50.0%
	GAAGAGGATTCATGTCCGAG+TGG	+	chr1_3:50287326-50287345	Msa0123290:CDS	50.0%
	TATGCCATCAAGGTGCACTG+AGG	+	chr1_3:50287356-50287375	Msa0123290:CDS	50.0%
	AACTCCTCAGTGCACCTTGA+TGG	-	chr1_3:50287363-50287382	None:intergenic	50.0%
	GCACTGAGGAGTTCAGATTG+AGG	+	chr1_3:50287370-50287389	Msa0123290:CDS	50.0%
	TCAATTGAAGGCCGAGGCTA+AGG	+	chr1_3:50287407-50287426	Msa0123290:CDS	50.0%
	CCACCATGAAACCAGGTTTG+GGG	-	chr1_3:50287473-50287492	None:intergenic	50.0%
!!	CATGGTGGAAGGTGCTACAT+TGG	+	chr1_3:50287485-50287504	Msa0123290:CDS	50.0%
	CTGCCGCTCGAAATCACACT+AGG	-	chr1_3:50286079-50286098	None:intergenic	55.0%
	GATCGTAAGCCATGACCTGC+AGG	-	chr1_3:50286140-50286159	None:intergenic	55.0%
	TCTCGTCCCTTCCGCAAGAA+GGG	+	chr1_3:50286179-50286198	Msa0123290:CDS	55.0%
!	TAGCCTTAGCCACCTACCTC+AGG	+	chr1_3:50286207-50286226	Msa0123290:CDS	55.0%
	AGTCCTGAGGTAGGTGGCTA+AGG	-	chr1_3:50286213-50286232	None:intergenic	55.0%
	GGTGACATTCCAGACACGAC+CGG	-	chr1_3:50286318-50286337	None:intergenic	55.0%
	AATGTCACCAAGCGGGCCAT+TGG	+	chr1_3:50286329-50286348	Msa0123290:CDS	55.0%
	CCCCAAACCTGGTTTCATGG+TGG	+	chr1_3:50287470-50287489	Msa0123290:CDS	55.0%
	GCACCTTCCACCATGAAACC+AGG	-	chr1_3:50287480-50287499	None:intergenic	55.0%
	CTGCCGCTCGAAATCACACT+AGG	-	chr1_3:50286079-50286098	None:intergenic	55.0%
	GATCGTAAGCCATGACCTGC+AGG	-	chr1_3:50286140-50286159	None:intergenic	55.0%
	TCTCGTCCCTTCCGCAAGAA+GGG	+	chr1_3:50286179-50286198	Msa0123290:CDS	55.0%
!	TAGCCTTAGCCACCTACCTC+AGG	+	chr1_3:50286207-50286226	Msa0123290:CDS	55.0%
	AGTCCTGAGGTAGGTGGCTA+AGG	-	chr1_3:50286213-50286232	None:intergenic	55.0%
	GGTGACATTCCAGACACGAC+CGG	-	chr1_3:50286318-50286337	None:intergenic	55.0%
	AATGTCACCAAGCGGGCCAT+TGG	+	chr1_3:50286329-50286348	Msa0123290:CDS	55.0%
	CCCCAAACCTGGTTTCATGG+TGG	+	chr1_3:50287470-50287489	Msa0123290:CDS	55.0%
	GCACCTTCCACCATGAAACC+AGG	-	chr1_3:50287480-50287499	None:intergenic	55.0%
	CTCTCGTCCCTTCCGCAAGA+AGG	+	chr1_3:50286178-50286197	Msa0123290:CDS	60.0%
	TTCGACACCAATGGCCCGCT+TGG	-	chr1_3:50286339-50286358	None:intergenic	60.0%
	AAGGCCGAGGCTAAGGCCAA+GGG	+	chr1_3:50287414-50287433	Msa0123290:CDS	60.0%
!!	CTCTCCCTTGGCCTTAGCCT+CGG	-	chr1_3:50287421-50287440	None:intergenic	60.0%
!!	GGTGCTGATCACCTCTCCCT+TGG	-	chr1_3:50287433-50287452	None:intergenic	60.0%
	AGCACCAAGCGCAAGCCAGA+GGG	+	chr1_3:50287447-50287466	Msa0123290:CDS	60.0%
!	AAACCAGGTTTGGGGCCCTC+TGG	-	chr1_3:50287465-50287484	None:intergenic	60.0%
	GGGCCCCAAACCTGGTTTCA+TGG	+	chr1_3:50287467-50287486	Msa0123290:CDS	60.0%
	CTCTCGTCCCTTCCGCAAGA+AGG	+	chr1_3:50286178-50286197	Msa0123290:CDS	60.0%
	TTCGACACCAATGGCCCGCT+TGG	-	chr1_3:50286339-50286358	None:intergenic	60.0%
	AAGGCCGAGGCTAAGGCCAA+GGG	+	chr1_3:50287414-50287433	Msa0123290:CDS	60.0%
!!	CTCTCCCTTGGCCTTAGCCT+CGG	-	chr1_3:50287421-50287440	None:intergenic	60.0%
!!	GGTGCTGATCACCTCTCCCT+TGG	-	chr1_3:50287433-50287452	None:intergenic	60.0%
	AGCACCAAGCGCAAGCCAGA+GGG	+	chr1_3:50287447-50287466	Msa0123290:CDS	60.0%
!	AAACCAGGTTTGGGGCCCTC+TGG	-	chr1_3:50287465-50287484	None:intergenic	60.0%
	GGGCCCCAAACCTGGTTTCA+TGG	+	chr1_3:50287467-50287486	Msa0123290:CDS	60.0%
	AGACACGACCGGTACGACCG+TGG	-	chr1_3:50286307-50286326	None:intergenic	65.0%
!	ACGGTCGTACCGGTCGTGTC+TGG	+	chr1_3:50286306-50286325	Msa0123290:CDS	65.0%
	GAAGGCCGAGGCTAAGGCCA+AGG	+	chr1_3:50287413-50287432	Msa0123290:CDS	65.0%
	CGAGGCTAAGGCCAAGGGAG+AGG	+	chr1_3:50287419-50287438	Msa0123290:CDS	65.0%
	CAGCACCAAGCGCAAGCCAG+AGG	+	chr1_3:50287446-50287465	Msa0123290:CDS	65.0%
	AAGCCAGAGGGCCCCAAACC+TGG	+	chr1_3:50287459-50287478	Msa0123290:CDS	65.0%
	AGACACGACCGGTACGACCG+TGG	-	chr1_3:50286307-50286326	None:intergenic	65.0%
!	ACGGTCGTACCGGTCGTGTC+TGG	+	chr1_3:50286306-50286325	Msa0123290:CDS	65.0%
	GAAGGCCGAGGCTAAGGCCA+AGG	+	chr1_3:50287413-50287432	Msa0123290:CDS	65.0%
	CGAGGCTAAGGCCAAGGGAG+AGG	+	chr1_3:50287419-50287438	Msa0123290:CDS	65.0%
	CAGCACCAAGCGCAAGCCAG+AGG	+	chr1_3:50287446-50287465	Msa0123290:CDS	65.0%
	AAGCCAGAGGGCCCCAAACC+TGG	+	chr1_3:50287459-50287478	Msa0123290:CDS	65.0%
!	GGGGCCCTCTGGCTTGCGCT+TGG	-	chr1_3:50287454-50287473	None:intergenic	75.0%
!	GGGGCCCTCTGGCTTGCGCT+TGG	-	chr1_3:50287454-50287473	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	50286051	50287814	50286051	ID=Msa0123290;Name=Msa0123290
chr1_3	mRNA	50286051	50287814	50286051	ID=Msa0123290-mRNA-1;Parent=Msa0123290;Name=Msa0123290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83\|1\|1\|1\|1\|1\|2\|251\|164
chr1_3	exon	50286051	50286370	50286051	ID=Msa0123290-mRNA-1:exon:15298;Parent=Msa0123290-mRNA-1
chr1_3	exon	50287306	50287814	50287306	ID=Msa0123290-mRNA-1:exon:15299;Parent=Msa0123290-mRNA-1
chr1_3	five_prime_UTR	50286051	50286133	50286051	ID=Msa0123290-mRNA-1:five_prime_utr;Parent=Msa0123290-mRNA-1
chr1_3	CDS	50286134	50286370	50286134	ID=Msa0123290-mRNA-1:cds;Parent=Msa0123290-mRNA-1
chr1_3	CDS	50287306	50287563	50287306	ID=Msa0123290-mRNA-1:cds;Parent=Msa0123290-mRNA-1
chr1_3	three_prime_UTR	50287564	50287814	50287564	ID=Msa0123290-mRNA-1:three_prime_utr;Parent=Msa0123290-mRNA-1

Gene Sequence

>Msa0123290

ATGCCTGCAGGTCATGGCTTACGATCCCGCACCAGAGATTCATTCTCTCGTCCCTTCCGCAAGAAGGGAACAATAGCCTTAGCCACCTACCTCAGGACTTATCACATCGGTGACTATGTCGACATTAGAGTTAATGGAGCTGTGCACAAAGGTATGCCGCACAAATTCTACCACGGTCGTACCGGTCGTGTCTGGAATGTCACCAAGCGGGCCATTGGTGTCGAAGTCAACAAGCAAGTTAGGAACAAGATATTGAGGAAGAGGATTCATGTCCGAGTGGAGCATGTTATGCCATCAAGGTGCACTGAGGAGTTCAGATTGAGGAAGATCAAGAATGATCAATTGAAGGCCGAGGCTAAGGCCAAGGGAGAGGTGATCAGCACCAAGCGCAAGCCAGAGGGCCCCAAACCTGGTTTCATGGTGGAAGGTGCTACATTGGAGACTGTTACTCCAATTCCATATGATGTCGTTAATGATCTCAAAGGAGGATACTAG

Protein sequence

>Msa0123290

MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY*