Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333370 | sp|Q94HF1|EIF3K_ORYSJ | 78.475 | 223 | 47 | 1 | 19 | 241 | 5 | 226 | 4.47e-131 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333370 | G7JS43 | 95.021 | 241 | 6 | 1 | 1 | 241 | 1 | 235 | 1.61e-166 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040220 | Msa1333370 | 0.806173 | 9.352851e-50 | -8.615850e-47 |
| Msa0086160 | Msa1333370 | 0.831812 | 1.349962e-55 | -8.615850e-47 |
| Msa0087910 | Msa1333370 | 0.808289 | 3.331781e-50 | -8.615850e-47 |
| Msa0602900 | Msa1333370 | 0.839787 | 1.285726e-57 | -8.615850e-47 |
| Msa0619230 | Msa1333370 | 0.825137 | 5.522545e-54 | -8.615850e-47 |
| Msa0643960 | Msa1333370 | 0.839684 | 1.367813e-57 | -8.615850e-47 |
| Msa0694400 | Msa1333370 | 0.817781 | 2.760427e-52 | -8.615850e-47 |
| Msa0708630 | Msa1333370 | 0.825122 | 5.568147e-54 | -8.615850e-47 |
| Msa0790450 | Msa1333370 | 0.817833 | 2.685566e-52 | -8.615850e-47 |
| Msa0128330 | Msa1333370 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0132460 | Msa1333370 | 0.824226 | 9.051138e-54 | -8.615850e-47 |
| Msa0134580 | Msa1333370 | 0.834055 | 3.738601e-56 | -8.615850e-47 |
| Msa0167860 | Msa1333370 | 0.805347 | 1.394710e-49 | -8.615850e-47 |
| Msa0182050 | Msa1333370 | 0.825559 | 4.388333e-54 | -8.615850e-47 |
| Msa0182100 | Msa1333370 | 0.853267 | 2.675368e-61 | -8.615850e-47 |
| Msa0188740 | Msa1333370 | 0.809770 | 1.605299e-50 | -8.615850e-47 |
| Msa0192300 | Msa1333370 | 0.811221 | 7.801868e-51 | -8.615850e-47 |
| Msa1235950 | Msa1333370 | 0.833777 | 4.388880e-56 | -8.615850e-47 |
| Msa1235980 | Msa1333370 | 0.840186 | 1.011721e-57 | -8.615850e-47 |
| Msa1237040 | Msa1333370 | 0.804813 | 1.803659e-49 | -8.615850e-47 |
| Msa1270640 | Msa1333370 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa1270710 | Msa1333370 | 0.811054 | 8.482313e-51 | -8.615850e-47 |
| Msa1284060 | Msa1333370 | 0.813228 | 2.847027e-51 | -8.615850e-47 |
| Msa1333370 | Msa1341780 | 0.825152 | 5.477313e-54 | -8.615850e-47 |
| Msa1333370 | Msa1371410 | 0.851258 | 9.976966e-61 | -8.615850e-47 |
| Msa1333370 | Msa1385480 | 0.814158 | 1.776204e-51 | -8.615850e-47 |
| Msa1333370 | Msa1390760 | 0.826175 | 3.133863e-54 | -8.615850e-47 |
| Msa1333370 | Msa1403520 | 0.802608 | 5.175576e-49 | -8.615850e-47 |
| Msa1333370 | Msa1407550 | 0.807521 | 4.853814e-50 | -8.615850e-47 |
| Msa1333370 | Msa1415620 | 0.842472 | 2.532444e-58 | -8.615850e-47 |
| Msa1333370 | Msa1421510 | 0.801364 | 9.321565e-49 | -8.615850e-47 |
| Msa1333370 | Msa1432310 | 0.806874 | 6.655841e-50 | -8.615850e-47 |
| Msa1333370 | Msa1450560 | 0.820318 | 7.306537e-53 | -8.615850e-47 |
| Msa1333370 | Msa1463570 | 0.804692 | 1.911856e-49 | -8.615850e-47 |
| Msa1333370 | Msa1465700 | 0.834520 | 2.858488e-56 | -8.615850e-47 |
| Msa0371490 | Msa1333370 | 0.805850 | 1.094034e-49 | -8.615850e-47 |
| Msa0382950 | Msa1333370 | 0.801343 | 9.415038e-49 | -8.615850e-47 |
| Msa0426090 | Msa1333370 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0426250 | Msa1333370 | 0.818005 | 2.456662e-52 | -8.615850e-47 |
| Msa0432750 | Msa1333370 | 0.838917 | 2.162981e-57 | -8.615850e-47 |
| Msa0433010 | Msa1333370 | 0.816060 | 6.717670e-52 | -8.615850e-47 |
| Msa0479980 | Msa1333370 | 0.840709 | 7.385185e-58 | -8.615850e-47 |
| Msa1085850 | Msa1333370 | 0.819322 | 1.234243e-52 | -8.615850e-47 |
| Msa0270160 | Msa1333370 | 0.820846 | 5.527520e-53 | -8.615850e-47 |
| Msa0277600 | Msa1333370 | 0.832701 | 8.133372e-56 | -8.615850e-47 |
| Msa0301250 | Msa1333370 | 0.818100 | 2.337257e-52 | -8.615850e-47 |
| Msa0313060 | Msa1333370 | 0.822475 | 2.322987e-53 | -8.615850e-47 |
| Msa0315430 | Msa1333370 | 0.843142 | 1.680374e-58 | -8.615850e-47 |
| Msa0340560 | Msa1333370 | 0.809043 | 2.299913e-50 | -8.615850e-47 |
| Msa1116940 | Msa1333370 | 0.814295 | 1.657277e-51 | -8.615850e-47 |
| Msa1180000 | Msa1333370 | 0.821068 | 4.914840e-53 | -8.615850e-47 |
| Msa1219760 | Msa1333370 | 0.945006 | 6.832691e-104 | -8.615850e-47 |
| Msa0511760 | Msa1333370 | 0.804026 | 2.631876e-49 | -8.615850e-47 |
| Msa0521730 | Msa1333370 | 0.810220 | 1.284506e-50 | -8.615850e-47 |
| Msa0547920 | Msa1333370 | 0.845072 | 5.101864e-59 | -8.615850e-47 |
| Msa0573550 | Msa1333370 | 0.832726 | 8.017114e-56 | -8.615850e-47 |
| Msa0574780 | Msa1333370 | 0.814686 | 1.357708e-51 | -8.615850e-47 |
| Msa0597240 | Msa1333370 | 0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0929700 | Msa1333370 | 0.847637 | 1.019408e-59 | -8.615850e-47 |
| Msa0930890 | Msa1333370 | 0.831714 | 1.427427e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333370 | MtrunA17_Chr4g0069991 | 95.021 | 241 | 6 | 1 | 1 | 241 | 1 | 235 | 3.10e-170 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333370 | AT4G33250.1 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 8.25e-128 | 361 |
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8_4:-53474868 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8_4:+53473660 | Msa1333370:CDS |
| TCGAGATCTGGAAGAATATC+AGG | 0.283637 | 8_4:-53472429 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8_4:+53473568 | Msa1333370:CDS |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8_4:-53474318 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8_4:-53474308 | None:intergenic |
| GATAGCGAACGCGAAGTACT+AGG | 0.371547 | 8_4:+53472257 | Msa1333370:five_prime_UTR |
| TGAAGAGAGAGTTTCGAAAT+GGG | 0.376778 | 8_4:+53472303 | Msa1333370:exon |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8_4:-53474867 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8_4:+53472736 | Msa1333370:CDS |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8_4:+53474753 | Msa1333370:intron |
| GTGAAGAGAGAGTTTCGAAA+TGG | 0.406395 | 8_4:+53472302 | Msa1333370:exon |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8_4:-53474794 | None:intergenic |
| ATAGTTTGTACCACACGTTC+CGG | 0.420899 | 8_4:-53473196 | None:intergenic |
| AAGAGACACAGGCTGAAGTC+TGG | 0.427245 | 8_4:-53473166 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8_4:-53474803 | None:intergenic |
| CGATGAGTTGACCCTTCCCC+TGG | 0.436267 | 8_4:-53474839 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8_4:+53473661 | Msa1333370:CDS |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8_4:-53474948 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8_4:+53472449 | Msa1333370:CDS |
| CTCAAATTGAAGCATACAAT+GGG | 0.458273 | 8_4:-53475044 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8_4:-53472346 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8_4:+53472356 | Msa1333370:CDS |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8_4:-53474811 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8_4:+53474245 | Msa1333370:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8_4:+53473704 | Msa1333370:CDS |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8_4:+53472578 | Msa1333370:CDS |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8_4:+53472730 | Msa1333370:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8_4:+53474764 | Msa1333370:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8_4:+53474905 | Msa1333370:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8_4:-53474863 | None:intergenic |
| TATTGAGAAAAGCCAGGGGA+AGG | 0.508280 | 8_4:+53474827 | Msa1333370:CDS |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8_4:-53474272 | None:intergenic |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8_4:+53474803 | Msa1333370:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8_4:+53474821 | Msa1333370:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8_4:-53472563 | None:intergenic |
| CACAGGCTGAAGTCTGGAGC+TGG | 0.532716 | 8_4:-53473160 | None:intergenic |
| ATAGCGAACGCGAAGTACTA+GGG | 0.534033 | 8_4:+53472258 | Msa1333370:five_prime_UTR |
| ATTCTTCTCTTCAGACTGGA+AGG | 0.536061 | 8_4:+53473645 | Msa1333370:intron |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8_4:+53474802 | Msa1333370:CDS |
| TCTCAAATTGAAGCATACAA+TGG | 0.545357 | 8_4:-53475045 | None:intergenic |
| AATTGAAGCATACAATGGGA+TGG | 0.554475 | 8_4:-53475040 | None:intergenic |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8_4:+53474255 | Msa1333370:intron |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8_4:+53474919 | Msa1333370:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8_4:-53473146 | None:intergenic |
| TCAATTTGAGAATTCATGAA+CGG | 0.571032 | 8_4:+53475057 | Msa1333370:three_prime_UTR |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8_4:-53472581 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8_4:-53474781 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8_4:+53474798 | Msa1333370:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8_4:-53472590 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8_4:+53474822 | Msa1333370:CDS |
| ATTGAAGCATACAATGGGAT+GGG | 0.587058 | 8_4:-53475039 | None:intergenic |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8_4:-53474921 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8_4:-53472385 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8_4:+53474317 | Msa1333370:CDS |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8_4:+53472357 | Msa1333370:CDS |
| ATTGAGAAAAGCCAGGGGAA+GGG | 0.616926 | 8_4:+53474828 | Msa1333370:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8_4:+53472351 | Msa1333370:CDS |
| TCGCTATCTTACCACTCACA+AGG | 0.620802 | 8_4:-53472242 | None:intergenic |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8_4:+53473526 | Msa1333370:intron |
| CGCTATCTTACCACTCACAA+GGG | 0.651512 | 8_4:-53472241 | None:intergenic |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8_4:-53473147 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8_4:+53472360 | Msa1333370:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8_4:+53472345 | Msa1333370:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.752929 | 8_4:+53474823 | Msa1333370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | + | chr8_4:53472646-53472665 | Msa1333370:intron | 10.0% |
| !!! | ATTTGGTTTTGTTTTATAAT+AGG | + | chr8_4:53473123-53473142 | Msa1333370:intron | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | - | chr8_4:53473503-53473522 | None:intergenic | 15.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | - | chr8_4:53473504-53473523 | None:intergenic | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | + | chr8_4:53474528-53474547 | Msa1333370:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | + | chr8_4:53474566-53474585 | Msa1333370:intron | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | - | chr8_4:53474734-53474753 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | + | chr8_4:53474737-53474756 | Msa1333370:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | - | chr8_4:53472607-53472626 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | - | chr8_4:53473319-53473338 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | + | chr8_4:53473330-53473349 | Msa1333370:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | + | chr8_4:53474234-53474253 | Msa1333370:intron | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | - | chr8_4:53474347-53474366 | None:intergenic | 20.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | - | chr8_4:53472478-53472497 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | + | chr8_4:53472487-53472506 | Msa1333370:intron | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | + | chr8_4:53472488-53472507 | Msa1333370:intron | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | - | chr8_4:53472495-53472514 | None:intergenic | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | + | chr8_4:53472521-53472540 | Msa1333370:intron | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | - | chr8_4:53472530-53472549 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | - | chr8_4:53472599-53472618 | None:intergenic | 25.0% |
| ! | TCATGAAAATAAGCTGAAAA+CGG | - | chr8_4:53472916-53472935 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | + | chr8_4:53473106-53473125 | Msa1333370:intron | 25.0% |
| ! | TTAGATGTCTATAATTGAGA+AGG | + | chr8_4:53473292-53473311 | Msa1333370:intron | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | - | chr8_4:53473469-53473488 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | + | chr8_4:53473523-53473542 | Msa1333370:intron | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | - | chr8_4:53473725-53473744 | None:intergenic | 25.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | + | chr8_4:53473817-53473836 | Msa1333370:intron | 25.0% |
| ! | TATTAGAGGATCTATTAAGA+AGG | + | chr8_4:53473831-53473850 | Msa1333370:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | + | chr8_4:53474061-53474080 | Msa1333370:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | + | chr8_4:53474128-53474147 | Msa1333370:intron | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | + | chr8_4:53474129-53474148 | Msa1333370:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | + | chr8_4:53474349-53474368 | Msa1333370:intron | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | - | chr8_4:53474360-53474379 | None:intergenic | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | + | chr8_4:53474502-53474521 | Msa1333370:intron | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | + | chr8_4:53474503-53474522 | Msa1333370:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | + | chr8_4:53474531-53474550 | Msa1333370:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | + | chr8_4:53474569-53474588 | Msa1333370:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | - | chr8_4:53474683-53474702 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | - | chr8_4:53474870-53474889 | None:intergenic | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | - | chr8_4:53474871-53474890 | None:intergenic | 25.0% |
| ! | ATAGAAAATCAGCTAAGAAT+AGG | - | chr8_4:53474951-53474970 | None:intergenic | 25.0% |
| !!! | TATTCTTAGCTGATTTTCTA+TGG | + | chr8_4:53474950-53474969 | Msa1333370:exon | 25.0% |
| !!! | ATTCTTAGCTGATTTTCTAT+GGG | + | chr8_4:53474951-53474970 | Msa1333370:exon | 25.0% |
| ! | TCAATTTGAGAATTCATGAA+CGG | + | chr8_4:53475057-53475076 | Msa1333370:three_prime_UTR | 25.0% |
| ! | ACATTAATGCAAAAAGTCAA+GGG | - | chr8_4:53475096-53475115 | None:intergenic | 25.0% |
| ! | AACATTAATGCAAAAAGTCA+AGG | - | chr8_4:53475097-53475116 | None:intergenic | 25.0% |
| !!! | AGTAACTTGCTTTTTGAAAT+AGG | - | chr8_4:53475139-53475158 | None:intergenic | 25.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | - | chr8_4:53472444-53472463 | None:intergenic | 30.0% |
| CGAAAATTATGTCAATGATC+AGG | + | chr8_4:53472449-53472468 | Msa1333370:CDS | 30.0% | |
| AACCAAAATTCATATGCCTA+AGG | + | chr8_4:53472797-53472816 | Msa1333370:intron | 30.0% | |
| ACCAAAATTCATATGCCTAA+GGG | + | chr8_4:53472798-53472817 | Msa1333370:intron | 30.0% | |
| AGTGATAATATCAGCTATCT+TGG | - | chr8_4:53473094-53473113 | None:intergenic | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | + | chr8_4:53473243-53473262 | Msa1333370:intron | 30.0% | |
| CTCAATTATAGACATCTAAC+AGG | - | chr8_4:53473291-53473310 | None:intergenic | 30.0% | |
| TAATATTCTTCTCTTCAGAC+TGG | + | chr8_4:53473641-53473660 | Msa1333370:intron | 30.0% | |
| ! | TGGTTTTTGATAAATCACTG+TGG | + | chr8_4:53473884-53473903 | Msa1333370:intron | 30.0% |
| ATATGACAAGCATTTCAAGA+TGG | + | chr8_4:53474024-53474043 | Msa1333370:intron | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | + | chr8_4:53474060-53474079 | Msa1333370:intron | 30.0% | |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | + | chr8_4:53474130-53474149 | Msa1333370:intron | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | + | chr8_4:53474148-53474167 | Msa1333370:intron | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | + | chr8_4:53474170-53474189 | Msa1333370:intron | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | - | chr8_4:53474431-53474450 | None:intergenic | 30.0% |
| TCCAAAACTTAGTTTAACTC+CGG | + | chr8_4:53474442-53474461 | Msa1333370:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | + | chr8_4:53474504-53474523 | Msa1333370:intron | 30.0% | |
| ! | TTTCTCAAATACAAGAGTGT+TGG | + | chr8_4:53474617-53474636 | Msa1333370:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | - | chr8_4:53474866-53474885 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | - | chr8_4:53474891-53474910 | None:intergenic | 30.0% |
| !! | TTCTTAGCTGATTTTCTATG+GGG | + | chr8_4:53474952-53474971 | Msa1333370:exon | 30.0% |
| ! | TCTCAAATTCGTACATTTTC+TGG | - | chr8_4:53474993-53475012 | None:intergenic | 30.0% |
| CTCAAATTGAAGCATACAAT+GGG | - | chr8_4:53475047-53475066 | None:intergenic | 30.0% | |
| TCTCAAATTGAAGCATACAA+TGG | - | chr8_4:53475048-53475067 | None:intergenic | 30.0% | |
| CATTAATGCAAAAAGTCAAG+GGG | - | chr8_4:53475095-53475114 | None:intergenic | 30.0% | |
| TGAAGAGAGAGTTTCGAAAT+GGG | + | chr8_4:53472303-53472322 | Msa1333370:exon | 35.0% | |
| ! | ATCTGAGAACTCATTTTCTC+AGG | - | chr8_4:53472716-53472735 | None:intergenic | 35.0% |
| ! | TCCCTTAGGCATATGAATTT+TGG | - | chr8_4:53472802-53472821 | None:intergenic | 35.0% |
| ! | TCATATGCCTAAGGGATTTT+TGG | + | chr8_4:53472806-53472825 | Msa1333370:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | - | chr8_4:53472944-53472963 | None:intergenic | 35.0% |
| GCTTATCATGATAAGCACTT+GGG | + | chr8_4:53473032-53473051 | Msa1333370:intron | 35.0% | |
| ! | TGTTTTATAATAGGCCCTCA+TGG | + | chr8_4:53473132-53473151 | Msa1333370:intron | 35.0% |
| TTATAGACATCTAACAGGAG+TGG | - | chr8_4:53473286-53473305 | None:intergenic | 35.0% | |
| ! | GTCAATCTTTTGTGTTACAC+AGG | + | chr8_4:53473352-53473371 | Msa1333370:intron | 35.0% |
| TCGAGTAATGCTAAATAGGA+AGG | - | chr8_4:53473465-53473484 | None:intergenic | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | + | chr8_4:53473526-53473545 | Msa1333370:intron | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | + | chr8_4:53473568-53473587 | Msa1333370:CDS | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | + | chr8_4:53473765-53473784 | Msa1333370:intron | 35.0% | |
| ! | TGATGAGTTGGAAAAAGACA+TGG | + | chr8_4:53473864-53473883 | Msa1333370:intron | 35.0% |
| ATCAGATATTTGTAACCGCA+AGG | - | chr8_4:53474004-53474023 | None:intergenic | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | - | chr8_4:53474147-53474166 | None:intergenic | 35.0% | |
| !! | TTGACTCTGATTTGGCTTAT+AGG | + | chr8_4:53474178-53474197 | Msa1333370:intron | 35.0% |
| AATTATTGCAGGATTTGAGC+AGG | + | chr8_4:53474245-53474264 | Msa1333370:intron | 35.0% | |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | - | chr8_4:53474301-53474320 | None:intergenic | 35.0% |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | - | chr8_4:53474446-53474465 | None:intergenic | 35.0% |
| TATGCGTTCATTCATCAAAC+CGG | - | chr8_4:53474464-53474483 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | - | chr8_4:53474521-53474540 | None:intergenic | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | + | chr8_4:53474753-53474772 | Msa1333370:intron | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | + | chr8_4:53474764-53474783 | Msa1333370:CDS | 35.0% | |
| !! | TCTTAGCTGATTTTCTATGG+GGG | + | chr8_4:53474953-53474972 | Msa1333370:exon | 35.0% |
| ATTGAAGCATACAATGGGAT+GGG | - | chr8_4:53475042-53475061 | None:intergenic | 35.0% | |
| AATTGAAGCATACAATGGGA+TGG | - | chr8_4:53475043-53475062 | None:intergenic | 35.0% | |
| GTGAAGAGAGAGTTTCGAAA+TGG | + | chr8_4:53472302-53472321 | Msa1333370:exon | 40.0% | |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | - | chr8_4:53472349-53472368 | None:intergenic | 40.0% |
| TCGAGATCTGGAAGAATATC+AGG | - | chr8_4:53472432-53472451 | None:intergenic | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | - | chr8_4:53472593-53472612 | None:intergenic | 40.0% | |
| !! | TGCCTAAGGGATTTTTGGAT+TGG | + | chr8_4:53472811-53472830 | Msa1333370:intron | 40.0% |
| AGCCAATCCAAAAATCCCTT+AGG | - | chr8_4:53472816-53472835 | None:intergenic | 40.0% | |
| CGCTTATCATGATAAGCACT+TGG | + | chr8_4:53473031-53473050 | Msa1333370:intron | 40.0% | |
| !! | CCTGTGTCTCTTTTTGATTC+CGG | + | chr8_4:53473177-53473196 | Msa1333370:CDS | 40.0% |
| ! | ATAGTTTGTACCACACGTTC+CGG | - | chr8_4:53473199-53473218 | None:intergenic | 40.0% |
| TCTTTGAACTGCGTAAGTCA+TGG | - | chr8_4:53473611-53473630 | None:intergenic | 40.0% | |
| ATTCTTCTCTTCAGACTGGA+AGG | + | chr8_4:53473645-53473664 | Msa1333370:intron | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | + | chr8_4:53473791-53473810 | Msa1333370:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | - | chr8_4:53473795-53473814 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | + | chr8_4:53473792-53473811 | Msa1333370:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | - | chr8_4:53473796-53473815 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | + | chr8_4:53473793-53473812 | Msa1333370:intron | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | - | chr8_4:53473797-53473816 | None:intergenic | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | + | chr8_4:53473852-53473871 | Msa1333370:intron | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | + | chr8_4:53473974-53473993 | Msa1333370:intron | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | + | chr8_4:53473975-53473994 | Msa1333370:intron | 40.0% | |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | - | chr8_4:53474311-53474330 | None:intergenic | 40.0% |
| GTGTTCAAGGAATTTGTCCA+AGG | - | chr8_4:53474784-53474803 | None:intergenic | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | + | chr8_4:53474821-53474840 | Msa1333370:CDS | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | + | chr8_4:53474822-53474841 | Msa1333370:CDS | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | + | chr8_4:53474919-53474938 | Msa1333370:CDS | 40.0% | |
| ! | TCGTTCTTTTCCCTTGTGAG+TGG | + | chr8_4:53472231-53472250 | Msa1333370:five_prime_UTR | 45.0% |
| CGCTATCTTACCACTCACAA+GGG | - | chr8_4:53472244-53472263 | None:intergenic | 45.0% | |
| TCGCTATCTTACCACTCACA+AGG | - | chr8_4:53472245-53472264 | None:intergenic | 45.0% | |
| ! | ATAGCGAACGCGAAGTACTA+GGG | + | chr8_4:53472258-53472277 | Msa1333370:five_prime_UTR | 45.0% |
| CAAGTACAACAGCAAGGACA+AGG | + | chr8_4:53472351-53472370 | Msa1333370:CDS | 45.0% | |
| ! | GAAGGCAGAGATTTGATTCG+AGG | - | chr8_4:53472566-53472585 | None:intergenic | 45.0% |
| TCAGATCGTTGCTCGCATAT+TGG | + | chr8_4:53472730-53472749 | Msa1333370:CDS | 45.0% | |
| ! | CGTTGCTCGCATATTGGTTA+AGG | + | chr8_4:53472736-53472755 | Msa1333370:CDS | 45.0% |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | - | chr8_4:53473084-53473103 | None:intergenic | 45.0% |
| CCGGAATCAAAAAGAGACAC+AGG | - | chr8_4:53473180-53473199 | None:intergenic | 45.0% | |
| !! | CTTTTTGATTCCGGAACGTG+TGG | + | chr8_4:53473186-53473205 | Msa1333370:CDS | 45.0% |
| TGGAAGGTTTCGTCAGTTCT+GGG | + | chr8_4:53473661-53473680 | Msa1333370:CDS | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | + | chr8_4:53473704-53473723 | Msa1333370:CDS | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | - | chr8_4:53473786-53473805 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | + | chr8_4:53473920-53473939 | Msa1333370:intron | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | + | chr8_4:53473921-53473940 | Msa1333370:intron | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | - | chr8_4:53473929-53473948 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | + | chr8_4:53473927-53473946 | Msa1333370:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr8_4:53473933-53473952 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr8_4:53473932-53473951 | Msa1333370:intron | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | - | chr8_4:53474275-53474294 | None:intergenic | 45.0% | |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | - | chr8_4:53474797-53474816 | None:intergenic | 45.0% |
| CTCAATAACCCAACCAGAGT+TGG | - | chr8_4:53474814-53474833 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | + | chr8_4:53474823-53474842 | Msa1333370:CDS | 45.0% | |
| TATTGAGAAAAGCCAGGGGA+AGG | + | chr8_4:53474827-53474846 | Msa1333370:CDS | 45.0% | |
| ATTGAGAAAAGCCAGGGGAA+GGG | + | chr8_4:53474828-53474847 | Msa1333370:CDS | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | + | chr8_4:53474905-53474924 | Msa1333370:CDS | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | - | chr8_4:53474924-53474943 | None:intergenic | 45.0% | |
| ! | GATAGCGAACGCGAAGTACT+AGG | + | chr8_4:53472257-53472276 | Msa1333370:five_prime_UTR | 50.0% |
| GCCGTACAAGTACAACAGCA+AGG | + | chr8_4:53472345-53472364 | Msa1333370:CDS | 50.0% | |
| ACAACAGCAAGGACAAGGAC+AGG | + | chr8_4:53472356-53472375 | Msa1333370:CDS | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | + | chr8_4:53472357-53472376 | Msa1333370:CDS | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | - | chr8_4:53472388-53472407 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | - | chr8_4:53472584-53472603 | None:intergenic | 50.0% | |
| AAGAGACACAGGCTGAAGTC+TGG | - | chr8_4:53473169-53473188 | None:intergenic | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | + | chr8_4:53473660-53473679 | Msa1333370:CDS | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | + | chr8_4:53474255-53474274 | Msa1333370:intron | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | + | chr8_4:53474317-53474336 | Msa1333370:CDS | 50.0% |
| ACCTCAGCAAGCACAGTTCT+AGG | - | chr8_4:53474321-53474340 | None:intergenic | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | + | chr8_4:53474798-53474817 | Msa1333370:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | + | chr8_4:53474802-53474821 | Msa1333370:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | + | chr8_4:53474803-53474822 | Msa1333370:CDS | 50.0% | |
| TGGAGCTGGCATAGCCATGA+GGG | - | chr8_4:53473149-53473168 | None:intergenic | 55.0% | |
| CGTGTAACTGGGAAGCCTTG+CGG | + | chr8_4:53473986-53474005 | Msa1333370:intron | 55.0% | |
| CCCAACCAGAGTTGGCTACT+TGG | - | chr8_4:53474806-53474825 | None:intergenic | 55.0% | |
| CAGCAAGGACAAGGACAGGG+AGG | + | chr8_4:53472360-53472379 | Msa1333370:CDS | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | + | chr8_4:53472578-53472597 | Msa1333370:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | - | chr8_4:53473150-53473169 | None:intergenic | 60.0% | |
| ! | CACAGGCTGAAGTCTGGAGC+TGG | - | chr8_4:53473163-53473182 | None:intergenic | 60.0% |
| ! | CGATGAGTTGACCCTTCCCC+TGG | - | chr8_4:53474842-53474861 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 53472229 | 53475163 | 53472229 | ID=Msa1333370;Name=Msa1333370 |
| chr8_4 | mRNA | 53472229 | 53475163 | 53472229 | ID=Msa1333370-mRNA-1;Parent=Msa1333370;Name=Msa1333370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=92|1|1|1|1|1|8|201|241 |
| chr8_4 | exon | 53472229 | 53472470 | 53472229 | ID=Msa1333370-mRNA-1:exon:16359;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53472543 | 53472599 | 53472543 | ID=Msa1333370-mRNA-1:exon:16360;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53472707 | 53472757 | 53472707 | ID=Msa1333370-mRNA-1:exon:16361;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53473145 | 53473207 | 53473145 | ID=Msa1333370-mRNA-1:exon:16362;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53473539 | 53473589 | 53473539 | ID=Msa1333370-mRNA-1:exon:16363;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53473659 | 53473725 | 53473659 | ID=Msa1333370-mRNA-1:exon:16364;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53474256 | 53474338 | 53474256 | ID=Msa1333370-mRNA-1:exon:16365;Parent=Msa1333370-mRNA-1 |
| chr8_4 | exon | 53474759 | 53475163 | 53474759 | ID=Msa1333370-mRNA-1:exon:16366;Parent=Msa1333370-mRNA-1 |
| chr8_4 | five_prime_UTR | 53472229 | 53472320 | 53472229 | ID=Msa1333370-mRNA-1:five_prime_utr;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53472321 | 53472470 | 53472321 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53472543 | 53472599 | 53472543 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53472707 | 53472757 | 53472707 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53473145 | 53473207 | 53473145 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53473539 | 53473589 | 53473539 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53473659 | 53473725 | 53473659 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53474256 | 53474338 | 53474256 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | CDS | 53474759 | 53474962 | 53474759 | ID=Msa1333370-mRNA-1:cds;Parent=Msa1333370-mRNA-1 |
| chr8_4 | three_prime_UTR | 53474963 | 53475163 | 53474963 | ID=Msa1333370-mRNA-1:three_prime_utr;Parent=Msa1333370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
