Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62623.t1 | RYR64685.1 | 72.8 | 790 | 113 | 6 | 1 | 688 | 1 | 790 | 0.00E+00 | 1075.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62623.t1 | Q8R050 | 57.1 | 429 | 180 | 2 | 70 | 498 | 208 | 632 | 4.3e-140 | 500.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62623.t1 | A0A445DNE3 | 72.8 | 790 | 113 | 6 | 1 | 688 | 1 | 790 | 0.0e+00 | 1075.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene62623 | 0.805579 | 1.25E-49 | -1.69E-46 |
MS.gene049151 | MS.gene62623 | 0.837332 | 5.53E-57 | -1.69E-46 |
MS.gene049153 | MS.gene62623 | 0.802 | 6.91E-49 | -1.69E-46 |
MS.gene049230 | MS.gene62623 | 0.866554 | 2.62E-65 | -1.69E-46 |
MS.gene049378 | MS.gene62623 | 0.8755 | 2.93E-68 | -1.69E-46 |
MS.gene049758 | MS.gene62623 | 0.846699 | 1.84E-59 | -1.69E-46 |
MS.gene04984 | MS.gene62623 | 0.833549 | 5.00E-56 | -1.69E-46 |
MS.gene049915 | MS.gene62623 | 0.806135 | 9.53E-50 | -1.69E-46 |
MS.gene04991 | MS.gene62623 | -0.802209 | 6.25E-49 | -1.69E-46 |
MS.gene050226 | MS.gene62623 | 0.834891 | 2.31E-56 | -1.69E-46 |
MS.gene050227 | MS.gene62623 | 0.83835 | 3.03E-57 | -1.69E-46 |
MS.gene050228 | MS.gene62623 | 0.831442 | 1.67E-55 | -1.69E-46 |
MS.gene050623 | MS.gene62623 | -0.870756 | 1.15E-66 | -1.69E-46 |
MS.gene050642 | MS.gene62623 | 0.869108 | 3.96E-66 | -1.69E-46 |
MS.gene050762 | MS.gene62623 | 0.843995 | 9.94E-59 | -1.69E-46 |
MS.gene050763 | MS.gene62623 | 0.846866 | 1.66E-59 | -1.69E-46 |
MS.gene05119 | MS.gene62623 | -0.800928 | 1.15E-48 | -1.69E-46 |
MS.gene051535 | MS.gene62623 | 0.86592 | 4.16E-65 | -1.69E-46 |
MS.gene051860 | MS.gene62623 | 0.820112 | 8.15E-53 | -1.69E-46 |
MS.gene051983 | MS.gene62623 | 0.876748 | 1.09E-68 | -1.69E-46 |
MS.gene052077 | MS.gene62623 | 0.872109 | 4.09E-67 | -1.69E-46 |
MS.gene052176 | MS.gene62623 | 0.813691 | 2.25E-51 | -1.69E-46 |
MS.gene052188 | MS.gene62623 | 0.801238 | 9.90E-49 | -1.69E-46 |
MS.gene052309 | MS.gene62623 | -0.829346 | 5.42E-55 | -1.69E-46 |
MS.gene052340 | MS.gene62623 | 0.806902 | 6.56E-50 | -1.69E-46 |
MS.gene052389 | MS.gene62623 | 0.81185 | 5.70E-51 | -1.69E-46 |
MS.gene052420 | MS.gene62623 | 0.805521 | 1.28E-49 | -1.69E-46 |
MS.gene052426 | MS.gene62623 | 0.818238 | 2.18E-52 | -1.69E-46 |
MS.gene052970 | MS.gene62623 | -0.804324 | 2.28E-49 | -1.69E-46 |
MS.gene053073 | MS.gene62623 | 0.814857 | 1.24E-51 | -1.69E-46 |
MS.gene053216 | MS.gene62623 | 0.831017 | 2.12E-55 | -1.69E-46 |
MS.gene053494 | MS.gene62623 | 0.815778 | 7.76E-52 | -1.69E-46 |
MS.gene053557 | MS.gene62623 | 0.80518 | 1.51E-49 | -1.69E-46 |
MS.gene053559 | MS.gene62623 | 0.81716 | 3.81E-52 | -1.69E-46 |
MS.gene053577 | MS.gene62623 | 0.821643 | 3.62E-53 | -1.69E-46 |
MS.gene053836 | MS.gene62623 | 0.830062 | 3.63E-55 | -1.69E-46 |
MS.gene054379 | MS.gene62623 | 0.845049 | 5.17E-59 | -1.69E-46 |
MS.gene054542 | MS.gene62623 | 0.834697 | 2.58E-56 | -1.69E-46 |
MS.gene054930 | MS.gene62623 | 0.873265 | 1.68E-67 | -1.69E-46 |
MS.gene05510 | MS.gene62623 | 0.831149 | 1.97E-55 | -1.69E-46 |
MS.gene055441 | MS.gene62623 | 0.809258 | 2.07E-50 | -1.69E-46 |
MS.gene055701 | MS.gene62623 | 0.841439 | 4.75E-58 | -1.69E-46 |
MS.gene055859 | MS.gene62623 | 0.800851 | 1.19E-48 | -1.69E-46 |
MS.gene056400 | MS.gene62623 | 0.811839 | 5.73E-51 | -1.69E-46 |
MS.gene056849 | MS.gene62623 | 0.801102 | 1.06E-48 | -1.69E-46 |
MS.gene056979 | MS.gene62623 | 0.872334 | 3.44E-67 | -1.69E-46 |
MS.gene05761 | MS.gene62623 | 0.813694 | 2.25E-51 | -1.69E-46 |
MS.gene058139 | MS.gene62623 | 0.811663 | 6.25E-51 | -1.69E-46 |
MS.gene058142 | MS.gene62623 | 0.818789 | 1.63E-52 | -1.69E-46 |
MS.gene058182 | MS.gene62623 | 0.812287 | 4.57E-51 | -1.69E-46 |
MS.gene058399 | MS.gene62623 | 0.837217 | 5.92E-57 | -1.69E-46 |
MS.gene058435 | MS.gene62623 | 0.859282 | 4.61E-63 | -1.69E-46 |
MS.gene058503 | MS.gene62623 | 0.816351 | 5.78E-52 | -1.69E-46 |
MS.gene058749 | MS.gene62623 | 0.820381 | 7.07E-53 | -1.69E-46 |
MS.gene058845 | MS.gene62623 | 0.802941 | 4.42E-49 | -1.69E-46 |
MS.gene059285 | MS.gene62623 | 0.844217 | 8.67E-59 | -1.69E-46 |
MS.gene05984 | MS.gene62623 | 0.830784 | 2.42E-55 | -1.69E-46 |
MS.gene059894 | MS.gene62623 | 0.814182 | 1.75E-51 | -1.69E-46 |
MS.gene059899 | MS.gene62623 | 0.849713 | 2.71E-60 | -1.69E-46 |
MS.gene060084 | MS.gene62623 | 0.880825 | 3.99E-70 | -1.69E-46 |
MS.gene060297 | MS.gene62623 | 0.857586 | 1.48E-62 | -1.69E-46 |
MS.gene060495 | MS.gene62623 | 0.835608 | 1.52E-56 | -1.69E-46 |
MS.gene060683 | MS.gene62623 | 0.824291 | 8.74E-54 | -1.69E-46 |
MS.gene060685 | MS.gene62623 | 0.807199 | 5.68E-50 | -1.69E-46 |
MS.gene060802 | MS.gene62623 | 0.81919 | 1.32E-52 | -1.69E-46 |
MS.gene060940 | MS.gene62623 | 0.860651 | 1.78E-63 | -1.69E-46 |
MS.gene060942 | MS.gene62623 | 0.839373 | 1.65E-57 | -1.69E-46 |
MS.gene060943 | MS.gene62623 | 0.827263 | 1.72E-54 | -1.69E-46 |
MS.gene061002 | MS.gene62623 | 0.843823 | 1.11E-58 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62623.t1 | MTR_8g106700 | 97.988 | 497 | 10 | 0 | 1 | 497 | 1 | 497 | 0.0 | 993 |
MS.gene62623.t1 | MTR_8g106700 | 94.366 | 497 | 7 | 1 | 1 | 497 | 1 | 476 | 0.0 | 944 |
MS.gene62623.t1 | MTR_8g106700 | 98.698 | 461 | 6 | 0 | 37 | 497 | 10 | 470 | 0.0 | 931 |
MS.gene62623.t1 | MTR_6g080420 | 82.136 | 515 | 71 | 4 | 2 | 497 | 3 | 515 | 0.0 | 862 |
MS.gene62623.t1 | MTR_8g106690 | 92.571 | 175 | 13 | 0 | 516 | 690 | 58 | 232 | 5.73e-112 | 337 |
MS.gene62623.t1 | MTR_4g014810 | 37.500 | 432 | 260 | 6 | 70 | 497 | 4 | 429 | 7.25e-94 | 298 |
MS.gene62623.t1 | MTR_1g095703 | 37.963 | 432 | 258 | 6 | 70 | 497 | 4 | 429 | 3.09e-93 | 296 |
MS.gene62623.t1 | MTR_1g495705 | 37.963 | 432 | 258 | 6 | 70 | 497 | 4 | 429 | 4.39e-93 | 296 |
MS.gene62623.t1 | MTR_1g095650 | 37.963 | 432 | 258 | 6 | 70 | 497 | 4 | 429 | 4.39e-93 | 296 |
MS.gene62623.t1 | MTR_6g021800 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 9.75e-93 | 295 |
MS.gene62623.t1 | MTR_6g021805 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 9.75e-93 | 295 |
MS.gene62623.t1 | MTR_1g024175 | 36.706 | 425 | 259 | 6 | 74 | 494 | 8 | 426 | 8.83e-89 | 285 |
MS.gene62623.t1 | MTR_1g013680 | 36.782 | 435 | 262 | 7 | 70 | 497 | 4 | 432 | 2.31e-87 | 282 |
MS.gene62623.t1 | MTR_1g085410 | 35.831 | 427 | 264 | 6 | 70 | 492 | 4 | 424 | 8.65e-84 | 271 |
MS.gene62623.t1 | MTR_8g087950 | 37.731 | 432 | 255 | 8 | 74 | 498 | 276 | 700 | 3.81e-83 | 277 |
MS.gene62623.t1 | MTR_8g087950 | 37.731 | 432 | 255 | 8 | 74 | 498 | 349 | 773 | 1.37e-82 | 278 |
MS.gene62623.t1 | MTR_8g014590 | 36.047 | 430 | 263 | 7 | 74 | 497 | 8 | 431 | 1.67e-80 | 263 |
MS.gene62623.t1 | MTR_1g101870 | 35.185 | 432 | 265 | 8 | 70 | 497 | 4 | 424 | 1.75e-73 | 254 |
MS.gene62623.t1 | MTR_1g101870 | 35.185 | 432 | 265 | 8 | 70 | 497 | 4 | 424 | 3.76e-73 | 254 |
MS.gene62623.t1 | MTR_2g080210 | 34.028 | 432 | 245 | 8 | 69 | 497 | 5 | 399 | 3.82e-72 | 241 |
MS.gene62623.t1 | MTR_2g082730 | 33.180 | 434 | 263 | 8 | 71 | 498 | 5 | 417 | 6.51e-72 | 243 |
MS.gene62623.t1 | MTR_8g008740 | 40.256 | 313 | 179 | 5 | 74 | 382 | 8 | 316 | 6.95e-70 | 236 |
MS.gene62623.t1 | MTR_1g089520 | 31.850 | 427 | 265 | 8 | 70 | 492 | 5 | 409 | 9.55e-67 | 229 |
MS.gene62623.t1 | MTR_5g037350 | 30.382 | 497 | 293 | 9 | 67 | 520 | 11 | 497 | 1.84e-66 | 229 |
MS.gene62623.t1 | MTR_1g095650 | 36.826 | 334 | 201 | 6 | 168 | 497 | 1 | 328 | 3.17e-60 | 206 |
MS.gene62623.t1 | MTR_2g082665 | 30.645 | 434 | 248 | 8 | 71 | 498 | 5 | 391 | 3.61e-58 | 205 |
MS.gene62623.t1 | MTR_8g013910 | 31.519 | 441 | 261 | 13 | 70 | 492 | 4 | 421 | 3.74e-56 | 197 |
MS.gene62623.t1 | MTR_2g037420 | 29.099 | 433 | 256 | 7 | 70 | 497 | 4 | 390 | 1.44e-51 | 186 |
MS.gene62623.t1 | MTR_1g024165 | 45.652 | 138 | 75 | 0 | 74 | 211 | 12 | 149 | 1.20e-36 | 134 |
MS.gene62623.t1 | MTR_1g101880 | 41.722 | 151 | 88 | 0 | 70 | 220 | 4 | 154 | 8.44e-34 | 130 |
MS.gene62623.t1 | MTR_3g076660 | 26.351 | 444 | 268 | 12 | 70 | 498 | 89 | 488 | 7.32e-29 | 121 |
MS.gene62623.t1 | MTR_2g021300 | 28.693 | 352 | 185 | 12 | 71 | 401 | 48 | 354 | 4.49e-28 | 118 |
MS.gene62623.t1 | MTR_7g094460 | 27.051 | 451 | 245 | 15 | 71 | 499 | 61 | 449 | 2.75e-27 | 115 |
MS.gene62623.t1 | MTR_1g112460 | 29.348 | 276 | 150 | 6 | 221 | 492 | 1 | 235 | 7.04e-27 | 111 |
MS.gene62623.t1 | MTR_8g014950 | 36.190 | 105 | 67 | 0 | 66 | 170 | 1 | 105 | 2.22e-19 | 84.3 |
MS.gene62623.t1 | MTR_1g495735 | 28.358 | 201 | 131 | 3 | 308 | 497 | 107 | 305 | 1.80e-18 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62623.t1 | AT1G18070 | 75.332 | 527 | 102 | 2 | 1 | 499 | 1 | 527 | 0.0 | 804 |
MS.gene62623.t1 | AT1G18070 | 75.332 | 527 | 102 | 2 | 1 | 499 | 1 | 527 | 0.0 | 804 |
MS.gene62623.t1 | AT1G18070 | 73.792 | 538 | 102 | 3 | 1 | 499 | 1 | 538 | 0.0 | 795 |
MS.gene62623.t1 | AT5G60390 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT5G60390 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT5G60390 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07920 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07940 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07940 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07940 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07940 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT1G07930 | 37.731 | 432 | 259 | 6 | 70 | 497 | 4 | 429 | 5.55e-93 | 296 |
MS.gene62623.t1 | AT5G10630 | 36.900 | 458 | 270 | 11 | 51 | 498 | 216 | 664 | 3.16e-91 | 298 |
MS.gene62623.t1 | AT5G10630 | 36.900 | 458 | 270 | 11 | 51 | 498 | 217 | 665 | 3.24e-91 | 298 |
MS.gene62623.t1 | AT5G10630 | 36.900 | 458 | 270 | 11 | 51 | 498 | 217 | 665 | 3.24e-91 | 298 |
MS.gene62623.t1 | AT5G10630 | 36.900 | 458 | 270 | 11 | 51 | 498 | 287 | 735 | 1.49e-90 | 298 |
MS.gene62623.t1 | AT5G10630 | 36.900 | 458 | 270 | 11 | 51 | 498 | 292 | 740 | 1.94e-90 | 298 |
MS.gene62623.t1 | AT1G18060 | 78.528 | 163 | 34 | 1 | 527 | 688 | 62 | 224 | 1.96e-88 | 276 |
MS.gene62623.t1 | AT1G07930 | 44.531 | 256 | 135 | 4 | 70 | 322 | 4 | 255 | 6.15e-66 | 222 |
MS.gene62623.t1 | AT4G20360 | 25.450 | 444 | 272 | 12 | 70 | 498 | 76 | 475 | 4.65e-31 | 127 |
MS.gene62623.t1 | AT4G20360 | 25.450 | 444 | 272 | 12 | 70 | 498 | 76 | 475 | 4.65e-31 | 127 |
MS.gene62623.t1 | AT4G02930 | 26.915 | 457 | 239 | 17 | 70 | 498 | 64 | 453 | 2.03e-26 | 113 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAACAAGGTTCACCATTT+TGG | 0.149732 | 4.2:+648377 | MS.gene62623:CDS |
TTCATGGGCTTCTTTGTCTT+TGG | 0.167813 | 4.2:-650923 | None:intergenic |
ATATATCCATTTCGGAAATT+AGG | 0.186205 | 4.2:+653155 | MS.gene62623:CDS |
AATTTACGCGTTCGATTATC+TGG | 0.191475 | 4.2:+650137 | MS.gene62623:CDS |
TGGATAGAAGCATTTGTTTA+TGG | 0.197435 | 4.2:+649649 | MS.gene62623:CDS |
CACTTGAATGTTGTGTTTAT+TGG | 0.216054 | 4.2:+646282 | MS.gene62623:CDS |
TCTTTGAATTTGTCAATTAT+AGG | 0.243891 | 4.2:-649872 | None:intergenic |
TGATAAATTGTTAGGCAAAA+AGG | 0.263160 | 4.2:+656878 | MS.gene62623:intron |
ATCGAAAACGGTGTATTTCT+TGG | 0.273425 | 4.2:+656901 | MS.gene62623:CDS |
CTATATATATTGATGAAAAT+CGG | 0.306807 | 4.2:+650090 | MS.gene62623:CDS |
ACAGTACCTGAAAGGTCTTT+TGG | 0.308878 | 4.2:-649730 | None:intergenic |
GATAAAGCAGAAGACATTAA+TGG | 0.329694 | 4.2:+645220 | MS.gene62623:intron |
AACTCAGTAACTGCTGATAT+TGG | 0.335584 | 4.2:-650688 | None:intergenic |
GCTTGTGGTTGTCAATAAAA+TGG | 0.335899 | 4.2:+648889 | MS.gene62623:CDS |
ATAAAGCAGAAGACATTAAT+GGG | 0.339505 | 4.2:+645221 | MS.gene62623:intron |
GAGATCCCAAAAGACCTTTC+AGG | 0.348919 | 4.2:+649724 | MS.gene62623:CDS |
ACTTGAATGTTGTGTTTATT+GGG | 0.356570 | 4.2:+646283 | MS.gene62623:CDS |
GATGCACCACTGATCATATT+AGG | 0.362256 | 4.2:-648625 | None:intergenic |
ACAGATGGAGTGGCAGCGTT+GGG | 0.367829 | 4.2:+653106 | MS.gene62623:CDS |
CCTTATTTGGCATGATGAAA+AGG | 0.369437 | 4.2:-649952 | None:intergenic |
TAATTTCCGAAATGGATATA+TGG | 0.371551 | 4.2:-653153 | None:intergenic |
TGGACGATCCTACAGTAAAT+TGG | 0.378658 | 4.2:+648909 | MS.gene62623:CDS |
AAGTTGAATCTGGTACTATT+CGG | 0.381513 | 4.2:+649918 | MS.gene62623:CDS |
TGAGCCTGAACCTCCTGCTT+TGG | 0.382030 | 4.2:-646035 | None:intergenic |
GGTGCATCTCAAGCTGATAT+TGG | 0.389282 | 4.2:+648640 | MS.gene62623:CDS |
GAAGTGGAGGCACTGCATTT+TGG | 0.392068 | 4.2:+657130 | MS.gene62623:CDS |
ACTCACAGGTGCATCCAAAA+TGG | 0.393834 | 4.2:-648391 | None:intergenic |
TATCCTGATTGCTTTAGAAA+TGG | 0.394318 | 4.2:-649084 | None:intergenic |
AGACATGGGAACTGTTGTTA+TGG | 0.396475 | 4.2:+649892 | MS.gene62623:CDS |
ATGCAACCTAATTTCCGAAA+TGG | 0.398201 | 4.2:-653161 | None:intergenic |
CCTCCCTAGTTGTGGAAAAT+CGG | 0.399225 | 4.2:-652512 | None:intergenic |
TGTTGTATTATGCCGTGTTC+AGG | 0.399737 | 4.2:+650976 | MS.gene62623:CDS |
CGGAAGGGAGAGTTTGAAAC+TGG | 0.403475 | 4.2:+648800 | MS.gene62623:CDS |
TCATCCATCTTATCAACATC+TGG | 0.405376 | 4.2:-645268 | None:intergenic |
GAACCCATGAGCCCCGATAT+TGG | 0.406128 | 4.2:-649609 | None:intergenic |
GACCACTGAGGAAAAGTATC+TGG | 0.408471 | 4.2:-647379 | None:intergenic |
AAAGTTCTATTTGTAAAGAA+TGG | 0.414531 | 4.2:+650950 | MS.gene62623:CDS |
CAGGTACATGGCTTATATTA+TGG | 0.421104 | 4.2:+648161 | MS.gene62623:intron |
CTTATTTGGCATGATGAAAA+GGG | 0.421813 | 4.2:-649951 | None:intergenic |
ATTCCATTTCTAAAGCAATC+AGG | 0.422988 | 4.2:+649081 | MS.gene62623:CDS |
AGTCTGCCATATATCCATTT+CGG | 0.423205 | 4.2:+653147 | MS.gene62623:CDS |
GAGAACCTTCGAATAAAAGT+TGG | 0.424151 | 4.2:+656991 | MS.gene62623:CDS |
AGATCCAAAGCAGGAGGTTC+AGG | 0.426022 | 4.2:+646031 | MS.gene62623:intron |
AGTTGAATCTGGTACTATTC+GGG | 0.426995 | 4.2:+649919 | MS.gene62623:CDS |
ACAAATCAGCCTTGGACAAA+AGG | 0.429622 | 4.2:+657029 | MS.gene62623:CDS |
GCCTTGGACAAAAGGAAGAC+AGG | 0.435622 | 4.2:+657037 | MS.gene62623:CDS |
TGATAGTATCGAAGTTCCTA+TGG | 0.435934 | 4.2:+649701 | MS.gene62623:CDS |
TTTACCAATATCGGGGCTCA+TGG | 0.437076 | 4.2:+649605 | MS.gene62623:CDS |
AGGATTCCCCTGGGAGAACC+TGG | 0.442328 | 4.2:+656069 | MS.gene62623:CDS |
ATCGGACAATTAACATTTGA+AGG | 0.443887 | 4.2:+656928 | MS.gene62623:CDS |
TACTGAGTTTGTTGCTCAGT+TGG | 0.450156 | 4.2:+650702 | MS.gene62623:CDS |
GACATGGGAACTGTTGTTAT+GGG | 0.452289 | 4.2:+649893 | MS.gene62623:CDS |
TGTTTGAATGGTAGATATTG+AGG | 0.455232 | 4.2:+645067 | MS.gene62623:intron |
GTTATGGGCAAAGTTGAATC+TGG | 0.463017 | 4.2:+649908 | MS.gene62623:CDS |
GATGCTGGCAAGTCTACAAC+TGG | 0.465080 | 4.2:+647353 | MS.gene62623:intron |
GACAGATGGAGTGGCAGCGT+TGG | 0.466982 | 4.2:+653105 | MS.gene62623:CDS |
GAAGAAGAAGACATATTGGC+TGG | 0.469904 | 4.2:+650164 | MS.gene62623:CDS |
TATATATATTGATGAAAATC+GGG | 0.470910 | 4.2:+650091 | MS.gene62623:CDS |
GCATTTGTTTATGGTGGGAT+GGG | 0.472505 | 4.2:+649658 | MS.gene62623:CDS |
ACACGTTGTCTAGTAATTCA+AGG | 0.482554 | 4.2:-650729 | None:intergenic |
TCTTGACACCCTTGGAGGAA+AGG | 0.485221 | 4.2:+656049 | MS.gene62623:CDS |
CAGGGGAAGACTGTTGAAGT+TGG | 0.489807 | 4.2:+648333 | MS.gene62623:intron |
AAATTTATATGCCAGGTACA+TGG | 0.491683 | 4.2:+648149 | MS.gene62623:intron |
GATGTTGATAAGATGGATGA+AGG | 0.491969 | 4.2:+645271 | MS.gene62623:CDS |
CAGGGGAATCCTTTCCTCCA+AGG | 0.495511 | 4.2:-656058 | None:intergenic |
AGCATTTGTTTATGGTGGGA+TGG | 0.495939 | 4.2:+649657 | MS.gene62623:CDS |
CAGTAAATTGGTCAAAAGAA+AGG | 0.496944 | 4.2:+648921 | MS.gene62623:CDS |
AGATGAAGAAGTCGAGCAAA+CGG | 0.497995 | 4.2:+646251 | MS.gene62623:CDS |
AAAGCAGGAGGTTCAGGCTC+AGG | 0.498013 | 4.2:+646037 | MS.gene62623:CDS |
TAGGAACTTCGATACTATCA+AGG | 0.500562 | 4.2:-649698 | None:intergenic |
TTGATTTGTAGCGAAAGATA+AGG | 0.502056 | 4.2:+646212 | MS.gene62623:intron |
ATAGAAGCATTTGTTTATGG+TGG | 0.502059 | 4.2:+649652 | MS.gene62623:CDS |
AAACCTCTACAAATCAGCCT+TGG | 0.505462 | 4.2:+657021 | MS.gene62623:CDS |
TCTTTACAGCTTGACTCAGC+AGG | 0.505885 | 4.2:+645101 | MS.gene62623:CDS |
CGGGTTAAACGCGCTGGACC+TGG | 0.510881 | 4.2:+650110 | MS.gene62623:CDS |
GACTGTTTCAGATCCAAAGC+AGG | 0.512619 | 4.2:+646022 | MS.gene62623:intron |
CTTGGAGGAAAGGATTCCCC+TGG | 0.519361 | 4.2:+656059 | MS.gene62623:CDS |
GCTGTTGAGGCCGAGCCAAA+AGG | 0.521124 | 4.2:+646059 | MS.gene62623:CDS |
TGTCCAAGGCTGATTTGTAG+AGG | 0.525164 | 4.2:-657024 | None:intergenic |
TCAGGTAATTTCTGCTCGGA+AGG | 0.526277 | 4.2:+648784 | MS.gene62623:intron |
GGTGTATTTCTTGGACCTAT+CGG | 0.527087 | 4.2:+656910 | MS.gene62623:CDS |
AGGGGAATCCTTTCCTCCAA+GGG | 0.528136 | 4.2:-656057 | None:intergenic |
ATAAGCATCCAGGTTCTCCC+AGG | 0.529448 | 4.2:-656077 | None:intergenic |
TCAAGCTGATATTGGAGTGT+TGG | 0.530193 | 4.2:+648648 | MS.gene62623:CDS |
TCAAATGTTAATTGTCCGAT+AGG | 0.532866 | 4.2:-656925 | None:intergenic |
GTTGTGTTTATTGGGCATGT+TGG | 0.533975 | 4.2:+646291 | MS.gene62623:CDS |
TGTTGAAGAAGAAGACATAT+TGG | 0.539132 | 4.2:+650160 | MS.gene62623:CDS |
ACTTCTTCATCTTGAACAGA+AGG | 0.541085 | 4.2:-646240 | None:intergenic |
TTTGAAACTGGATATGAGAG+AGG | 0.541153 | 4.2:+648812 | MS.gene62623:CDS |
AAAGCCAGATGTTGATAAGA+TGG | 0.543709 | 4.2:+645264 | MS.gene62623:CDS |
GAAAATCGGGTTAAACGCGC+TGG | 0.544322 | 4.2:+650104 | MS.gene62623:CDS |
GCTGAAAGAATCTCTTCTGC+TGG | 0.545166 | 4.2:-655984 | None:intergenic |
TTACCAATATCGGGGCTCAT+GGG | 0.548856 | 4.2:+649606 | MS.gene62623:CDS |
GGCATTTCTGCAGAGACAGA+TGG | 0.549533 | 4.2:+653091 | MS.gene62623:CDS |
GGGTTCGTCTTGTCTAGTGT+TGG | 0.550042 | 4.2:+650185 | MS.gene62623:CDS |
AGGACAAAAGTCGAGAAAGC+TGG | 0.550645 | 4.2:+647444 | MS.gene62623:CDS |
TATTAGGAACATAGCTCTTG+TGG | 0.554344 | 4.2:-648609 | None:intergenic |
AATTGACAAATTCAAAGACA+TGG | 0.557832 | 4.2:+649877 | MS.gene62623:CDS |
GGTTCAGGCTCAGGCTGTTG+AGG | 0.561412 | 4.2:+646046 | MS.gene62623:CDS |
AAAATACGAGAAAGAAGCTA+AGG | 0.561519 | 4.2:+647424 | MS.gene62623:CDS |
TAGAAGCATTTGTTTATGGT+GGG | 0.568705 | 4.2:+649653 | MS.gene62623:CDS |
GTTGCTCGAGGCCGAAGTGG+AGG | 0.570500 | 4.2:+657117 | MS.gene62623:CDS |
AAATGCAGCTAAGACAAGAA+AGG | 0.570671 | 4.2:+655959 | MS.gene62623:intron |
GGGTGTGACTAAGCTGCTTG+TGG | 0.573585 | 4.2:+648874 | MS.gene62623:CDS |
GCACATCCACTCTGTAGTTG+AGG | 0.575114 | 4.2:+650865 | MS.gene62623:CDS |
AAATGAGGAGGAGAGAGTAA+AGG | 0.581613 | 4.2:+648188 | MS.gene62623:CDS |
AATCTCTGAACAGCTGTGAG+AGG | 0.593439 | 4.2:-656230 | None:intergenic |
AGGTTCACTCTTCGCACTGA+AGG | 0.593832 | 4.2:+652532 | MS.gene62623:CDS |
CCTTGGACAAAAGGAAGACA+GGG | 0.594579 | 4.2:+657038 | MS.gene62623:CDS |
TTATATTATGGACACAAATG+AGG | 0.594698 | 4.2:+648173 | MS.gene62623:CDS |
TCAATCAGGTAATTTCTGCT+CGG | 0.598965 | 4.2:+648780 | MS.gene62623:intron |
AAGAAGAAGACATATTGGCT+GGG | 0.601167 | 4.2:+650165 | MS.gene62623:CDS |
GATAGTATCGAAGTTCCTAT+GGG | 0.604305 | 4.2:+649702 | MS.gene62623:CDS |
TTCTGCAGAGACAGATGGAG+TGG | 0.604814 | 4.2:+653096 | MS.gene62623:CDS |
ATTGACAAATTCAAAGACAT+GGG | 0.606716 | 4.2:+649878 | MS.gene62623:CDS |
AGCAGAAGACATTAATGGGG+TGG | 0.607728 | 4.2:+645225 | MS.gene62623:intron |
TTGGGGCATAATTGACAGCA+TGG | 0.609163 | 4.2:+653124 | MS.gene62623:CDS |
CAGATGGAGTGGCAGCGTTG+GGG | 0.611952 | 4.2:+653107 | MS.gene62623:CDS |
CAGGTAATTTCTGCTCGGAA+GGG | 0.612686 | 4.2:+648785 | MS.gene62623:intron |
TAAGCATCCAGGTTCTCCCA+GGG | 0.619857 | 4.2:-656076 | None:intergenic |
GCTGTTGCTCGAGGCCGAAG+TGG | 0.620105 | 4.2:+657114 | MS.gene62623:CDS |
AGGGTGTCAAGAAAAGAAGA+AGG | 0.621327 | 4.2:-656038 | None:intergenic |
TTAGAAATACAGTACCTGAA+AGG | 0.621965 | 4.2:-649738 | None:intergenic |
TCAAGGGCTTCAAATAAGCA+AGG | 0.633378 | 4.2:-649681 | None:intergenic |
CATTTGAAGGCAGACTGTCG+TGG | 0.634559 | 4.2:+656941 | MS.gene62623:CDS |
TATGTTCCTAATATGATCAG+TGG | 0.635810 | 4.2:+648619 | MS.gene62623:CDS |
AGAGTGAACCTCCCTAGTTG+TGG | 0.640426 | 4.2:-652520 | None:intergenic |
TTGGAGGAAAGGATTCCCCT+GGG | 0.641606 | 4.2:+656060 | MS.gene62623:CDS |
GAATCTGGTACTATTCGGGA+GGG | 0.642713 | 4.2:+649923 | MS.gene62623:CDS |
TTGAATGGTAGATATTGAGG+AGG | 0.642938 | 4.2:+645070 | MS.gene62623:intron |
TGAATCTGGTACTATTCGGG+AGG | 0.643294 | 4.2:+649922 | MS.gene62623:CDS |
GCTGGCAAGTCTACAACTGG+AGG | 0.646837 | 4.2:+647356 | MS.gene62623:CDS |
AGGAACTTCGATACTATCAA+GGG | 0.651603 | 4.2:-649697 | None:intergenic |
GAAACTGGATATGAGAGAGG+TGG | 0.654114 | 4.2:+648815 | MS.gene62623:CDS |
TGTTTCAGATCCAAAGCAGG+AGG | 0.654241 | 4.2:+646025 | MS.gene62623:intron |
CACATTCCTCAACTACAGAG+TGG | 0.659521 | 4.2:-650871 | None:intergenic |
TATTATGGACACAAATGAGG+AGG | 0.661413 | 4.2:+648176 | MS.gene62623:CDS |
AAAATGCAGTGCCTCCACTT+CGG | 0.663787 | 4.2:-657128 | None:intergenic |
GAGGAAATAGCTGTTGCTCG+AGG | 0.672148 | 4.2:+657105 | MS.gene62623:CDS |
AGACAGGGAACCAAGTACAA+AGG | 0.680370 | 4.2:+657053 | MS.gene62623:CDS |
AAGCATCCAGGTTCTCCCAG+GGG | 0.717216 | 4.2:-656075 | None:intergenic |
TAAAGCAGAAGACATTAATG+GGG | 0.725497 | 4.2:+645222 | MS.gene62623:intron |
GATCATCAACCTGACCACTG+AGG | 0.782429 | 4.2:-647391 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 644354 | 657179 | 644354 | ID=MS.gene62623 |
chr4.2 | mRNA | 644354 | 657179 | 644354 | ID=MS.gene62623.t1;Parent=MS.gene62623 |
chr4.2 | exon | 644354 | 644357 | 644354 | ID=MS.gene62623.t1.exon1;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 644354 | 644357 | 644354 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 645081 | 645122 | 645081 | ID=MS.gene62623.t1.exon2;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 645081 | 645122 | 645081 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 645230 | 645292 | 645230 | ID=MS.gene62623.t1.exon3;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 645230 | 645292 | 645230 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 646033 | 646080 | 646033 | ID=MS.gene62623.t1.exon4;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 646033 | 646080 | 646033 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 646223 | 646312 | 646223 | ID=MS.gene62623.t1.exon5;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 646223 | 646312 | 646223 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 647354 | 647465 | 647354 | ID=MS.gene62623.t1.exon6;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 647354 | 647465 | 647354 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 648164 | 648209 | 648164 | ID=MS.gene62623.t1.exon7;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 648164 | 648209 | 648164 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 648336 | 648407 | 648336 | ID=MS.gene62623.t1.exon8;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 648336 | 648407 | 648336 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 648607 | 648669 | 648607 | ID=MS.gene62623.t1.exon9;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 648607 | 648669 | 648607 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 648788 | 648942 | 648788 | ID=MS.gene62623.t1.exon10;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 648788 | 648942 | 648788 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 649056 | 649120 | 649056 | ID=MS.gene62623.t1.exon11;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 649056 | 649120 | 649056 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 649595 | 649745 | 649595 | ID=MS.gene62623.t1.exon12;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 649595 | 649745 | 649595 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 649868 | 649973 | 649868 | ID=MS.gene62623.t1.exon13;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 649868 | 649973 | 649868 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 650071 | 650206 | 650071 | ID=MS.gene62623.t1.exon14;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 650071 | 650206 | 650071 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 650683 | 650747 | 650683 | ID=MS.gene62623.t1.exon15;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 650683 | 650747 | 650683 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 650833 | 650997 | 650833 | ID=MS.gene62623.t1.exon16;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 650833 | 650997 | 650833 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 652481 | 652553 | 652481 | ID=MS.gene62623.t1.exon17;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 652481 | 652553 | 652481 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 652643 | 652676 | 652643 | ID=MS.gene62623.t1.exon18;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 652643 | 652676 | 652643 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 653088 | 653176 | 653088 | ID=MS.gene62623.t1.exon19;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 653088 | 653176 | 653088 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 655967 | 656112 | 655967 | ID=MS.gene62623.t1.exon20;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 655967 | 656112 | 655967 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 656203 | 656262 | 656203 | ID=MS.gene62623.t1.exon21;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 656203 | 656262 | 656203 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
chr4.2 | exon | 656892 | 657179 | 656892 | ID=MS.gene62623.t1.exon22;Parent=MS.gene62623.t1 |
chr4.2 | CDS | 656892 | 657179 | 656892 | ID=cds.MS.gene62623.t1;Parent=MS.gene62623.t1 |
Gene Sequence |
Protein sequence |