Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59979.t1 | XP_013452927.1 | 94.2 | 514 | 20 | 1 | 1 | 504 | 1 | 514 | 2.60E-271 | 944.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59979.t1 | P15170 | 57.5 | 428 | 178 | 2 | 78 | 505 | 71 | 494 | 3.6e-144 | 513.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59979.t1 | A0A072UM85 | 94.2 | 514 | 20 | 1 | 1 | 504 | 1 | 514 | 1.9e-271 | 944.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene59979 | 0.831368 | 1.74E-55 | -1.69E-46 |
MS.gene049368 | MS.gene59979 | 0.804485 | 2.11E-49 | -1.69E-46 |
MS.gene049887 | MS.gene59979 | 0.823225 | 1.55E-53 | -1.69E-46 |
MS.gene050084 | MS.gene59979 | 0.808449 | 3.08E-50 | -1.69E-46 |
MS.gene050085 | MS.gene59979 | 0.846204 | 2.52E-59 | -1.69E-46 |
MS.gene050277 | MS.gene59979 | 0.82484 | 6.49E-54 | -1.69E-46 |
MS.gene050317 | MS.gene59979 | 0.815432 | 9.27E-52 | -1.69E-46 |
MS.gene050437 | MS.gene59979 | 0.817747 | 2.81E-52 | -1.69E-46 |
MS.gene050689 | MS.gene59979 | 0.842074 | 3.23E-58 | -1.69E-46 |
MS.gene050752 | MS.gene59979 | 0.835278 | 1.84E-56 | -1.69E-46 |
MS.gene050838 | MS.gene59979 | 0.884927 | 1.26E-71 | -1.69E-46 |
MS.gene051003 | MS.gene59979 | 0.875116 | 3.97E-68 | -1.69E-46 |
MS.gene051063 | MS.gene59979 | 0.814366 | 1.60E-51 | -1.69E-46 |
MS.gene051102 | MS.gene59979 | 0.817415 | 3.34E-52 | -1.69E-46 |
MS.gene051234 | MS.gene59979 | 0.834979 | 2.19E-56 | -1.69E-46 |
MS.gene051328 | MS.gene59979 | 0.825373 | 4.86E-54 | -1.69E-46 |
MS.gene051343 | MS.gene59979 | 0.823269 | 1.52E-53 | -1.69E-46 |
MS.gene05134 | MS.gene59979 | 0.813502 | 2.48E-51 | -1.69E-46 |
MS.gene051381 | MS.gene59979 | 0.822671 | 2.09E-53 | -1.69E-46 |
MS.gene051642 | MS.gene59979 | 0.825557 | 4.39E-54 | -1.69E-46 |
MS.gene051676 | MS.gene59979 | 0.80486 | 1.76E-49 | -1.69E-46 |
MS.gene051746 | MS.gene59979 | 0.832782 | 7.77E-56 | -1.69E-46 |
MS.gene051748 | MS.gene59979 | 0.829803 | 4.20E-55 | -1.69E-46 |
MS.gene051756 | MS.gene59979 | 0.807101 | 5.96E-50 | -1.69E-46 |
MS.gene051757 | MS.gene59979 | 0.809455 | 1.88E-50 | -1.69E-46 |
MS.gene051850 | MS.gene59979 | 0.837127 | 6.24E-57 | -1.69E-46 |
MS.gene05188 | MS.gene59979 | 0.834997 | 2.17E-56 | -1.69E-46 |
MS.gene051903 | MS.gene59979 | 0.824415 | 8.17E-54 | -1.69E-46 |
MS.gene051975 | MS.gene59979 | 0.841171 | 5.58E-58 | -1.69E-46 |
MS.gene052072 | MS.gene59979 | 0.817509 | 3.18E-52 | -1.69E-46 |
MS.gene052133 | MS.gene59979 | 0.809968 | 1.46E-50 | -1.69E-46 |
MS.gene052335 | MS.gene59979 | 0.817989 | 2.48E-52 | -1.69E-46 |
MS.gene052342 | MS.gene59979 | 0.808817 | 2.57E-50 | -1.69E-46 |
MS.gene052397 | MS.gene59979 | 0.817926 | 2.56E-52 | -1.69E-46 |
MS.gene052434 | MS.gene59979 | 0.827669 | 1.38E-54 | -1.69E-46 |
MS.gene052947 | MS.gene59979 | 0.85598 | 4.38E-62 | -1.69E-46 |
MS.gene053058 | MS.gene59979 | 0.825624 | 4.24E-54 | -1.69E-46 |
MS.gene053109 | MS.gene59979 | 0.857399 | 1.68E-62 | -1.69E-46 |
MS.gene05315 | MS.gene59979 | 0.815261 | 1.01E-51 | -1.69E-46 |
MS.gene053381 | MS.gene59979 | 0.820473 | 6.73E-53 | -1.69E-46 |
MS.gene05364 | MS.gene59979 | 0.801332 | 9.46E-49 | -1.69E-46 |
MS.gene053952 | MS.gene59979 | 0.808431 | 3.11E-50 | -1.69E-46 |
MS.gene054403 | MS.gene59979 | 0.829603 | 4.69E-55 | -1.69E-46 |
MS.gene054823 | MS.gene59979 | 0.800721 | 1.26E-48 | -1.69E-46 |
MS.gene055162 | MS.gene59979 | 0.804482 | 2.12E-49 | -1.69E-46 |
MS.gene055311 | MS.gene59979 | 0.828453 | 8.91E-55 | -1.69E-46 |
MS.gene055313 | MS.gene59979 | 0.813224 | 2.85E-51 | -1.69E-46 |
MS.gene055314 | MS.gene59979 | 0.814725 | 1.33E-51 | -1.69E-46 |
MS.gene055424 | MS.gene59979 | 0.824888 | 6.32E-54 | -1.69E-46 |
MS.gene055468 | MS.gene59979 | 0.803497 | 3.39E-49 | -1.69E-46 |
MS.gene056043 | MS.gene59979 | -0.803509 | 3.37E-49 | -1.69E-46 |
MS.gene056075 | MS.gene59979 | 0.80473 | 1.88E-49 | -1.69E-46 |
MS.gene056181 | MS.gene59979 | 0.837279 | 5.71E-57 | -1.69E-46 |
MS.gene056432 | MS.gene59979 | 0.821719 | 3.48E-53 | -1.69E-46 |
MS.gene056580 | MS.gene59979 | 0.821761 | 3.40E-53 | -1.69E-46 |
MS.gene056631 | MS.gene59979 | 0.812785 | 3.56E-51 | -1.69E-46 |
MS.gene056787 | MS.gene59979 | 0.822224 | 2.66E-53 | -1.69E-46 |
MS.gene056986 | MS.gene59979 | 0.823336 | 1.46E-53 | -1.69E-46 |
MS.gene057057 | MS.gene59979 | 0.826207 | 3.08E-54 | -1.69E-46 |
MS.gene057094 | MS.gene59979 | 0.862279 | 5.67E-64 | -1.69E-46 |
MS.gene057140 | MS.gene59979 | 0.816204 | 6.24E-52 | -1.69E-46 |
MS.gene057234 | MS.gene59979 | 0.860372 | 2.16E-63 | -1.69E-46 |
MS.gene05781 | MS.gene59979 | 0.819929 | 8.97E-53 | -1.69E-46 |
MS.gene058054 | MS.gene59979 | 0.830159 | 3.44E-55 | -1.69E-46 |
MS.gene058055 | MS.gene59979 | 0.845933 | 2.98E-59 | -1.69E-46 |
MS.gene058238 | MS.gene59979 | 0.814891 | 1.22E-51 | -1.69E-46 |
MS.gene058646 | MS.gene59979 | 0.822366 | 2.46E-53 | -1.69E-46 |
MS.gene058654 | MS.gene59979 | 0.825382 | 4.83E-54 | -1.69E-46 |
MS.gene058852 | MS.gene59979 | 0.826543 | 2.56E-54 | -1.69E-46 |
MS.gene058906 | MS.gene59979 | 0.845248 | 4.57E-59 | -1.69E-46 |
MS.gene059146 | MS.gene59979 | 0.848081 | 7.69E-60 | -1.69E-46 |
MS.gene059171 | MS.gene59979 | 0.833251 | 5.94E-56 | -1.69E-46 |
MS.gene059227 | MS.gene59979 | 0.85469 | 1.04E-61 | -1.69E-46 |
MS.gene05978 | MS.gene59979 | 0.804742 | 1.87E-49 | -1.69E-46 |
MS.gene059898 | MS.gene59979 | 0.801783 | 7.65E-49 | -1.69E-46 |
MS.gene06001 | MS.gene59979 | 0.836944 | 6.95E-57 | -1.69E-46 |
MS.gene06010 | MS.gene59979 | 0.808912 | 2.45E-50 | -1.69E-46 |
MS.gene06011 | MS.gene59979 | 0.836204 | 1.07E-56 | -1.69E-46 |
MS.gene060429 | MS.gene59979 | 0.816523 | 5.29E-52 | -1.69E-46 |
MS.gene060586 | MS.gene59979 | 0.804488 | 2.11E-49 | -1.69E-46 |
MS.gene060702 | MS.gene59979 | 0.804249 | 2.37E-49 | -1.69E-46 |
MS.gene060763 | MS.gene59979 | 0.828316 | 9.62E-55 | -1.69E-46 |
MS.gene061006 | MS.gene59979 | 0.812137 | 4.93E-51 | -1.69E-46 |
MS.gene061145 | MS.gene59979 | 0.810432 | 1.16E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59979.t1 | MTR_6g080420 | 94.951 | 515 | 16 | 1 | 1 | 505 | 1 | 515 | 0.0 | 998 |
MS.gene59979.t1 | MTR_8g106700 | 83.794 | 506 | 71 | 4 | 2 | 505 | 1 | 497 | 0.0 | 849 |
MS.gene59979.t1 | MTR_8g106700 | 81.818 | 506 | 60 | 3 | 2 | 505 | 1 | 476 | 0.0 | 828 |
MS.gene59979.t1 | MTR_8g106700 | 86.081 | 467 | 60 | 2 | 41 | 505 | 7 | 470 | 0.0 | 818 |
MS.gene59979.t1 | MTR_4g014810 | 37.442 | 430 | 261 | 5 | 79 | 505 | 5 | 429 | 6.31e-97 | 300 |
MS.gene59979.t1 | MTR_1g095703 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.62e-96 | 298 |
MS.gene59979.t1 | MTR_1g495705 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 9.75e-96 | 297 |
MS.gene59979.t1 | MTR_1g095650 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 9.75e-96 | 297 |
MS.gene59979.t1 | MTR_6g021800 | 37.442 | 430 | 261 | 5 | 79 | 505 | 5 | 429 | 1.76e-95 | 296 |
MS.gene59979.t1 | MTR_6g021805 | 37.442 | 430 | 261 | 5 | 79 | 505 | 5 | 429 | 1.76e-95 | 296 |
MS.gene59979.t1 | MTR_1g024175 | 37.500 | 424 | 257 | 5 | 82 | 502 | 8 | 426 | 3.23e-92 | 288 |
MS.gene59979.t1 | MTR_1g013680 | 36.490 | 433 | 264 | 6 | 79 | 505 | 5 | 432 | 5.06e-90 | 283 |
MS.gene59979.t1 | MTR_1g085410 | 36.195 | 431 | 267 | 5 | 75 | 502 | 1 | 426 | 4.46e-87 | 275 |
MS.gene59979.t1 | MTR_8g087950 | 34.122 | 507 | 310 | 10 | 5 | 505 | 211 | 699 | 2.71e-85 | 278 |
MS.gene59979.t1 | MTR_8g087950 | 34.122 | 507 | 310 | 10 | 5 | 505 | 284 | 772 | 1.49e-84 | 277 |
MS.gene59979.t1 | MTR_8g014590 | 35.897 | 429 | 265 | 6 | 82 | 505 | 8 | 431 | 8.16e-84 | 266 |
MS.gene59979.t1 | MTR_1g101870 | 35.185 | 432 | 265 | 8 | 78 | 505 | 4 | 424 | 2.08e-75 | 254 |
MS.gene59979.t1 | MTR_1g101870 | 35.185 | 432 | 265 | 8 | 78 | 505 | 4 | 424 | 4.23e-75 | 254 |
MS.gene59979.t1 | MTR_2g082730 | 33.025 | 433 | 265 | 7 | 75 | 502 | 1 | 413 | 1.42e-73 | 242 |
MS.gene59979.t1 | MTR_2g080210 | 33.875 | 431 | 247 | 7 | 77 | 505 | 5 | 399 | 7.30e-73 | 238 |
MS.gene59979.t1 | MTR_8g008740 | 40.764 | 314 | 180 | 4 | 82 | 392 | 8 | 318 | 9.67e-73 | 239 |
MS.gene59979.t1 | MTR_1g089520 | 31.850 | 427 | 267 | 7 | 79 | 502 | 6 | 411 | 9.80e-71 | 235 |
MS.gene59979.t1 | MTR_5g037350 | 30.621 | 467 | 273 | 7 | 79 | 502 | 15 | 473 | 9.23e-68 | 228 |
MS.gene59979.t1 | MTR_1g095650 | 36.310 | 336 | 200 | 6 | 176 | 505 | 1 | 328 | 8.91e-62 | 206 |
MS.gene59979.t1 | MTR_2g082665 | 30.485 | 433 | 250 | 7 | 75 | 502 | 1 | 387 | 1.41e-59 | 204 |
MS.gene59979.t1 | MTR_8g013910 | 31.746 | 441 | 260 | 14 | 78 | 500 | 4 | 421 | 1.90e-58 | 199 |
MS.gene59979.t1 | MTR_2g037420 | 30.435 | 437 | 251 | 9 | 75 | 505 | 1 | 390 | 5.62e-55 | 191 |
MS.gene59979.t1 | MTR_1g024165 | 47.101 | 138 | 73 | 0 | 82 | 219 | 12 | 149 | 3.98e-39 | 139 |
MS.gene59979.t1 | MTR_1g101880 | 42.177 | 147 | 85 | 0 | 82 | 228 | 8 | 154 | 1.59e-35 | 134 |
MS.gene59979.t1 | MTR_3g076660 | 25.974 | 462 | 271 | 12 | 65 | 505 | 76 | 487 | 3.41e-29 | 120 |
MS.gene59979.t1 | MTR_2g021300 | 30.769 | 351 | 179 | 15 | 79 | 409 | 48 | 354 | 7.05e-28 | 116 |
MS.gene59979.t1 | MTR_1g112460 | 29.603 | 277 | 152 | 6 | 229 | 502 | 1 | 237 | 3.70e-27 | 110 |
MS.gene59979.t1 | MTR_7g094460 | 27.051 | 451 | 241 | 17 | 79 | 505 | 61 | 447 | 3.66e-26 | 111 |
MS.gene59979.t1 | MTR_8g014950 | 37.624 | 101 | 63 | 0 | 78 | 178 | 5 | 105 | 1.23e-19 | 84.7 |
MS.gene59979.t1 | MTR_1g495735 | 27.638 | 199 | 131 | 3 | 318 | 505 | 109 | 305 | 1.37e-17 | 84.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59979.t1 | AT1G18070 | 75.425 | 529 | 101 | 4 | 2 | 505 | 1 | 525 | 0.0 | 807 |
MS.gene59979.t1 | AT1G18070 | 75.425 | 529 | 101 | 4 | 2 | 505 | 1 | 525 | 0.0 | 807 |
MS.gene59979.t1 | AT1G18070 | 73.889 | 540 | 101 | 5 | 2 | 505 | 1 | 536 | 0.0 | 798 |
MS.gene59979.t1 | AT5G60390 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT5G60390 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT5G60390 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07920 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07940 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07940 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07940 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07940 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT1G07930 | 37.674 | 430 | 260 | 5 | 79 | 505 | 5 | 429 | 6.35e-96 | 298 |
MS.gene59979.t1 | AT5G10630 | 34.467 | 441 | 276 | 8 | 70 | 505 | 231 | 663 | 1.34e-90 | 291 |
MS.gene59979.t1 | AT5G10630 | 34.467 | 441 | 276 | 8 | 70 | 505 | 232 | 664 | 1.37e-90 | 291 |
MS.gene59979.t1 | AT5G10630 | 34.467 | 441 | 276 | 8 | 70 | 505 | 232 | 664 | 1.37e-90 | 291 |
MS.gene59979.t1 | AT5G10630 | 32.929 | 495 | 308 | 10 | 17 | 505 | 258 | 734 | 6.33e-90 | 291 |
MS.gene59979.t1 | AT5G10630 | 32.929 | 495 | 308 | 10 | 17 | 505 | 263 | 739 | 1.01e-89 | 290 |
MS.gene59979.t1 | AT1G07930 | 42.500 | 280 | 152 | 4 | 79 | 352 | 5 | 281 | 9.75e-70 | 228 |
MS.gene59979.t1 | AT4G20360 | 26.244 | 442 | 269 | 12 | 78 | 505 | 76 | 474 | 5.13e-32 | 128 |
MS.gene59979.t1 | AT4G20360 | 26.244 | 442 | 269 | 12 | 78 | 505 | 76 | 474 | 5.13e-32 | 128 |
MS.gene59979.t1 | AT4G02930 | 25.658 | 456 | 254 | 15 | 73 | 505 | 59 | 452 | 4.06e-25 | 108 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACATCAAGGTTTACGATTT+TGG | 0.090601 | 6.1:+71843643 | MS.gene59979:CDS |
ATAAAATAACCAACCTTATT+TGG | 0.134935 | 6.1:-71846731 | None:intergenic |
CACTTAAATGTTGTATTTAT+TGG | 0.162127 | 6.1:+71841124 | MS.gene59979:CDS |
TTCATAGGCTTCCTTGTCTT+TGG | 0.174647 | 6.1:-71847925 | None:intergenic |
GCTTGTTGTTGTTAATAAAA+TGG | 0.241079 | 6.1:+71845105 | MS.gene59979:CDS |
ACTTCTGTCTTTCCCTCATC+TGG | 0.250286 | 6.1:-71839710 | None:intergenic |
GAAGAAGAAGACATATTATC+TGG | 0.257063 | 6.1:+71846951 | MS.gene59979:CDS |
GAGATCCTAACGGTCCTTTC+AGG | 0.262495 | 6.1:+71846467 | MS.gene59979:CDS |
AAATTTAAATGATAGGTATA+TGG | 0.273003 | 6.1:+71843419 | MS.gene59979:intron |
CTGGACCTGGTGAAAATTTA+CGG | 0.283529 | 6.1:+71846910 | MS.gene59979:CDS |
CTTGTTGATTATGCCAAATA+AGG | 0.293729 | 6.1:+71846718 | MS.gene59979:CDS |
TTACCCATATCTGGGCTAAT+TGG | 0.319433 | 6.1:+71846349 | MS.gene59979:CDS |
TGCACCAATTAGCCCAGATA+TGG | 0.320776 | 6.1:-71846353 | None:intergenic |
TCTATTAAGACTGAGATAAA+AGG | 0.341814 | 6.1:+71840892 | MS.gene59979:CDS |
GCTGCAAATTCTTGAATTGC+TGG | 0.343048 | 6.1:+71847721 | MS.gene59979:CDS |
TTCTCTGACTTTCCACAACT+TGG | 0.359120 | 6.1:+71848253 | MS.gene59979:CDS |
AGACATGGGAACTGTTGTTA+TGG | 0.379082 | 6.1:+71846658 | MS.gene59979:CDS |
GGTGCATCTCAAGCTGATAT+TGG | 0.389282 | 6.1:+71844868 | MS.gene59979:CDS |
TGGAGTCAAGAGCTTCAAAT+AGG | 0.394803 | 6.1:-71846429 | None:intergenic |
CGAAAGGGAGAATTTGAAAC+TGG | 0.395507 | 6.1:+71845016 | MS.gene59979:CDS |
GATACCATTTCTTAAGCAAT+CGG | 0.399399 | 6.1:+71845270 | MS.gene59979:CDS |
GGCCACTGAGGTAAAGTATC+TGG | 0.400510 | 6.1:-71842143 | None:intergenic |
TAGGTATATGGCTTACATAA+TGG | 0.418640 | 6.1:+71843431 | MS.gene59979:intron |
TCAAGCTGATATTGGAGTAT+TGG | 0.421955 | 6.1:+71844876 | MS.gene59979:CDS |
AATTTACGGGTTAGAGTATC+CGG | 0.434161 | 6.1:+71846924 | MS.gene59979:CDS |
TGGACCTGGTGAAAATTTAC+GGG | 0.434499 | 6.1:+71846911 | MS.gene59979:CDS |
AACTCAGTAACAGCTGGTAT+TGG | 0.434757 | 6.1:-71847689 | None:intergenic |
GACATGGGAACTGTTGTTAT+GGG | 0.435711 | 6.1:+71846659 | MS.gene59979:CDS |
TCTTTGAATTTGTCGAGTAT+AGG | 0.445210 | 6.1:-71846638 | None:intergenic |
TGTGCTTGAACCTCTTGCTT+AGG | 0.446201 | 6.1:-71840868 | None:intergenic |
TAACCCGATTGCTTAAGAAA+TGG | 0.453560 | 6.1:-71845274 | None:intergenic |
GATGCACCACTGATCATGTT+AGG | 0.462975 | 6.1:-71844853 | None:intergenic |
CTATATATATTGATGAGACT+CGG | 0.464821 | 6.1:+71846877 | MS.gene59979:CDS |
AGAGAATTTCTCAATGCATA+TGG | 0.467775 | 6.1:-71848236 | None:intergenic |
GCAATTCAAGAATTTGCAGC+TGG | 0.468520 | 6.1:-71847718 | None:intergenic |
AGGTGTTGTGTGTCGAATTC+AGG | 0.475737 | 6.1:+71847978 | MS.gene59979:CDS |
CGGATATATTATCTAAGAAA+AGG | 0.477112 | 6.1:+71841101 | MS.gene59979:CDS |
GCACCAATTAGCCCAGATAT+GGG | 0.483102 | 6.1:-71846352 | None:intergenic |
TCTTTACAGCTTGAGTCAGC+AGG | 0.484486 | 6.1:+71839522 | MS.gene59979:CDS |
CAGGGAAAGACAGTTGAAGT+TGG | 0.485880 | 6.1:+71843599 | MS.gene59979:intron |
GGGTTTGTCCTGTCTAGTAC+TGG | 0.487138 | 6.1:+71846972 | MS.gene59979:CDS |
CGGGTTAAACGTGCTGGACC+TGG | 0.495361 | 6.1:+71846897 | MS.gene59979:CDS |
GTTGTATTTATTGGTCATGT+GGG | 0.498005 | 6.1:+71841133 | MS.gene59979:CDS |
GATACTTTACCTCAGTGGCC+AGG | 0.503870 | 6.1:+71842146 | MS.gene59979:CDS |
AACTGTTGTTATGGGAAAAG+TGG | 0.504481 | 6.1:+71846667 | MS.gene59979:CDS |
ATACCATTTCTTAAGCAATC+GGG | 0.506394 | 6.1:+71845271 | MS.gene59979:CDS |
TTTGAAACTGGATATGAGAA+AGG | 0.507954 | 6.1:+71845028 | MS.gene59979:CDS |
TATGTCTTCTTCTTCAACAC+CGG | 0.509996 | 6.1:-71846943 | None:intergenic |
GGATTGTCCGTTCATCAACC+TGG | 0.510942 | 6.1:-71842164 | None:intergenic |
TTGCAAGCTGAACATGTTCA+CGG | 0.515802 | 6.1:-71845060 | None:intergenic |
GTTATGGGAAAAGTGGAATC+TGG | 0.523925 | 6.1:+71846674 | MS.gene59979:CDS |
TCAGGTAATTTCTGCTCGAA+AGG | 0.523981 | 6.1:+71845000 | MS.gene59979:intron |
TCTCTGACTTTCCACAACTT+GGG | 0.524336 | 6.1:+71848254 | MS.gene59979:CDS |
TGCAAGCTGAACATGTTCAC+GGG | 0.533344 | 6.1:-71845059 | None:intergenic |
AAGAAGAAGACATATTATCT+GGG | 0.538646 | 6.1:+71846952 | MS.gene59979:CDS |
TCATCTTCTTCAACTTGCAC+CGG | 0.542703 | 6.1:-71841076 | None:intergenic |
CAGGTAATTTCTGCTCGAAA+GGG | 0.543026 | 6.1:+71845001 | MS.gene59979:intron |
TGAGGGAAAGACAGAAGTTG+AGG | 0.544648 | 6.1:+71839715 | MS.gene59979:CDS |
TCGGGTTACAATGTGAAGAA+AGG | 0.545454 | 6.1:+71845289 | MS.gene59979:CDS |
ATCTCGTAGAGGAACTTCAA+TGG | 0.548348 | 6.1:-71846449 | None:intergenic |
TCTTCTTCAACTTGCACCGG+AGG | 0.554751 | 6.1:-71841073 | None:intergenic |
GAGACTCGGGTTAAACGTGC+TGG | 0.555088 | 6.1:+71846891 | MS.gene59979:CDS |
AAAGCTTACCAGTACTAGAC+AGG | 0.560957 | 6.1:-71846980 | None:intergenic |
GACAGATAAGGAAATTCCTC+CGG | 0.562432 | 6.1:+71841057 | MS.gene59979:intron |
TGTTGTATTTATTGGTCATG+TGG | 0.563048 | 6.1:+71841132 | MS.gene59979:CDS |
TATATATATTGATGAGACTC+GGG | 0.564342 | 6.1:+71846878 | MS.gene59979:CDS |
GGACACAAATGAGGAAGAGA+GGG | 0.567260 | 6.1:+71843452 | MS.gene59979:CDS |
AGCATTTGTCCATGGTGGGA+TGG | 0.572231 | 6.1:+71846400 | MS.gene59979:CDS |
GATGCTGGTAAGTCTACTAC+AGG | 0.572715 | 6.1:+71842117 | MS.gene59979:intron |
ACTCGACAAATTCAAAGACA+TGG | 0.573226 | 6.1:+71846643 | MS.gene59979:CDS |
AAGGCTATTGATCCTTCCCA+CGG | 0.576716 | 6.1:-71848398 | None:intergenic |
CTCTGTAGTTGAAGAATGTG+AGG | 0.581596 | 6.1:+71847876 | MS.gene59979:CDS |
GGATGATCCTACAGTGCAGT+GGG | 0.584143 | 6.1:+71845126 | MS.gene59979:CDS |
AGGACAAAAGTAGAGAAAGC+TGG | 0.588639 | 6.1:+71842208 | MS.gene59979:CDS |
CCATACCTGAAAGGACCGTT+AGG | 0.589336 | 6.1:-71846472 | None:intergenic |
CAATTCAAGAATTTGCAGCT+GGG | 0.590390 | 6.1:-71847717 | None:intergenic |
TGGATAAAAGCATTTGTCCA+TGG | 0.592036 | 6.1:+71846392 | MS.gene59979:CDS |
CTTATTTGGCATAATCAACA+AGG | 0.593531 | 6.1:-71846717 | None:intergenic |
TTACATAATGGACACAAATG+AGG | 0.595469 | 6.1:+71843443 | MS.gene59979:CDS |
GCAACAAACTCAGTAACAGC+TGG | 0.596648 | 6.1:-71847695 | None:intergenic |
GACATAGCAGAAGACAGCAA+TGG | 0.602824 | 6.1:+71839677 | MS.gene59979:intron |
CTCGACAAATTCAAAGACAT+GGG | 0.603750 | 6.1:+71846644 | MS.gene59979:CDS |
TCCTCCTCGATATCTAACAT+TGG | 0.606959 | 6.1:-71839492 | None:intergenic |
GGAGTTGTAAATCCAGATGA+GGG | 0.612506 | 6.1:+71839698 | MS.gene59979:CDS |
CAAGCAGCTTAGACACACCC+AGG | 0.613480 | 6.1:-71845087 | None:intergenic |
GTGGCCAATGTTAGATATCG+AGG | 0.613613 | 6.1:+71839488 | None:intergenic |
TGGACACAAATGAGGAAGAG+AGG | 0.615049 | 6.1:+71843451 | MS.gene59979:CDS |
TGGAGTTGTAAATCCAGATG+AGG | 0.616106 | 6.1:+71839697 | MS.gene59979:CDS |
GGTTTCAGATCCTAAGCAAG+AGG | 0.618742 | 6.1:+71840858 | MS.gene59979:intron |
GGAATCTGGCAGTATTCGTG+AGG | 0.630708 | 6.1:+71846688 | MS.gene59979:CDS |
AGATTCACTCTTCGCACCGA+AGG | 0.634381 | 6.1:+71848277 | MS.gene59979:CDS |
TCAAGAGCTTCAAATAGGCA+AGG | 0.636728 | 6.1:-71846424 | None:intergenic |
CTGACTCAAGCTGTAAAGAA+CGG | 0.638319 | 6.1:-71839518 | None:intergenic |
AAAATACGAGAAAGAAGCCA+AGG | 0.641054 | 6.1:+71842188 | MS.gene59979:CDS |
AGAGTGAATCTCCCAAGTTG+TGG | 0.644393 | 6.1:-71848265 | None:intergenic |
TGGATGATCCTACAGTGCAG+TGG | 0.648027 | 6.1:+71845125 | MS.gene59979:CDS |
TCAGTGGCCAGGTTGATGAA+CGG | 0.648307 | 6.1:+71842157 | MS.gene59979:CDS |
TAAAAGCATTTGTCCATGGT+GGG | 0.651556 | 6.1:+71846396 | MS.gene59979:CDS |
TCAAACACACCATACCTGAA+AGG | 0.653023 | 6.1:-71846481 | None:intergenic |
GTTCCTCTACGAGATCCTAA+CGG | 0.653552 | 6.1:+71846457 | MS.gene59979:CDS |
TATGTTCCTAACATGATCAG+TGG | 0.655963 | 6.1:+71844847 | MS.gene59979:CDS |
GAAACTGGATATGAGAAAGG+TGG | 0.661890 | 6.1:+71845031 | MS.gene59979:CDS |
ATCAAATTGATCCAAAGACA+AGG | 0.662308 | 6.1:+71847914 | MS.gene59979:CDS |
GGCCAGATACTTTACCTCAG+TGG | 0.663074 | 6.1:+71842141 | MS.gene59979:CDS |
GAATCTGGCAGTATTCGTGA+GGG | 0.669804 | 6.1:+71846689 | MS.gene59979:CDS |
CACATTCTTCAACTACAGAG+TGG | 0.673082 | 6.1:-71847873 | None:intergenic |
ATAAAAGCATTTGTCCATGG+TGG | 0.673433 | 6.1:+71846395 | MS.gene59979:CDS |
GAATCTGCTAATACACAACA+AGG | 0.673726 | 6.1:+71839737 | MS.gene59979:CDS |
GCTGGTAAGTCTACTACAGG+AGG | 0.675855 | 6.1:+71842120 | MS.gene59979:CDS |
AGGCAAGGACCATCCCACCA+TGG | 0.697651 | 6.1:-71846409 | None:intergenic |
AAGCAGCTTAGACACACCCA+GGG | 0.698669 | 6.1:-71845086 | None:intergenic |
AAATGAGGAAGAGAGGGCAA+AGG | 0.704381 | 6.1:+71843458 | MS.gene59979:CDS |
GTTCATCAACCTGGCCACTG+AGG | 0.716402 | 6.1:-71842155 | None:intergenic |
GCCAATGTTAGATATCGAGG+AGG | 0.722181 | 6.1:+71839491 | None:intergenic |
GCAAGTTGAAGAAGATGACG+CGG | 0.729784 | 6.1:+71841081 | MS.gene59979:CDS |
GGACCGTTAGGATCTCGTAG+AGG | 0.744105 | 6.1:-71846460 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 71839495 | 71848423 | 71839495 | ID=MS.gene59979 |
chr6.1 | mRNA | 71839495 | 71848423 | 71839495 | ID=MS.gene59979.t1;Parent=MS.gene59979 |
chr6.1 | exon | 71839495 | 71839543 | 71839495 | ID=MS.gene59979.t1.exon1;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71839495 | 71839543 | 71839495 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71839678 | 71839758 | 71839678 | ID=MS.gene59979.t1.exon2;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71839678 | 71839758 | 71839678 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71840866 | 71840913 | 71840866 | ID=MS.gene59979.t1.exon3;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71840866 | 71840913 | 71840866 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71841062 | 71841154 | 71841062 | ID=MS.gene59979.t1.exon4;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71841062 | 71841154 | 71841062 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71842118 | 71842229 | 71842118 | ID=MS.gene59979.t1.exon5;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71842118 | 71842229 | 71842118 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71843434 | 71843479 | 71843434 | ID=MS.gene59979.t1.exon6;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71843434 | 71843479 | 71843434 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71843602 | 71843673 | 71843602 | ID=MS.gene59979.t1.exon7;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71843602 | 71843673 | 71843602 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71844835 | 71844897 | 71844835 | ID=MS.gene59979.t1.exon8;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71844835 | 71844897 | 71844835 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71845004 | 71845158 | 71845004 | ID=MS.gene59979.t1.exon9;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71845004 | 71845158 | 71845004 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71845246 | 71845310 | 71845246 | ID=MS.gene59979.t1.exon10;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71845246 | 71845310 | 71845246 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71846338 | 71846488 | 71846338 | ID=MS.gene59979.t1.exon11;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71846338 | 71846488 | 71846338 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71846634 | 71846739 | 71846634 | ID=MS.gene59979.t1.exon12;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71846634 | 71846739 | 71846634 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71846858 | 71846993 | 71846858 | ID=MS.gene59979.t1.exon13;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71846858 | 71846993 | 71846858 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71847684 | 71847748 | 71847684 | ID=MS.gene59979.t1.exon14;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71847684 | 71847748 | 71847684 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71847835 | 71847999 | 71847835 | ID=MS.gene59979.t1.exon15;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71847835 | 71847999 | 71847835 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71848226 | 71848298 | 71848226 | ID=MS.gene59979.t1.exon16;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71848226 | 71848298 | 71848226 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
chr6.1 | exon | 71848386 | 71848423 | 71848386 | ID=MS.gene59979.t1.exon17;Parent=MS.gene59979.t1 |
chr6.1 | CDS | 71848386 | 71848423 | 71848386 | ID=cds.MS.gene59979.t1;Parent=MS.gene59979.t1 |
Gene Sequence |
Protein sequence |