Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040156.t1 | RYR64685.1 | 71.6 | 792 | 122 | 7 | 1 | 691 | 1 | 790 | 0.00E+00 | 1085.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040156.t1 | Q8R050 | 56.9 | 429 | 181 | 2 | 73 | 501 | 208 | 632 | 5.7e-140 | 499.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040156.t1 | A0A445DNE3 | 71.6 | 792 | 122 | 7 | 1 | 691 | 1 | 790 | 0.0e+00 | 1085.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040156.t1 | MTR_8g106700 | 97.600 | 500 | 9 | 1 | 1 | 500 | 1 | 497 | 0.0 | 993 |
MS.gene040156.t1 | MTR_8g106700 | 94.000 | 500 | 6 | 1 | 1 | 500 | 1 | 476 | 0.0 | 949 |
MS.gene040156.t1 | MTR_8g106700 | 98.698 | 461 | 6 | 0 | 40 | 500 | 10 | 470 | 0.0 | 933 |
MS.gene040156.t1 | MTR_6g080420 | 82.136 | 515 | 74 | 4 | 2 | 500 | 3 | 515 | 0.0 | 867 |
MS.gene040156.t1 | MTR_8g106690 | 92.000 | 175 | 14 | 0 | 519 | 693 | 58 | 232 | 1.90e-112 | 338 |
MS.gene040156.t1 | MTR_4g014810 | 37.269 | 432 | 261 | 6 | 73 | 500 | 4 | 429 | 1.49e-93 | 297 |
MS.gene040156.t1 | MTR_1g095703 | 37.963 | 432 | 258 | 6 | 73 | 500 | 4 | 429 | 5.60e-93 | 296 |
MS.gene040156.t1 | MTR_1g495705 | 37.731 | 432 | 259 | 6 | 73 | 500 | 4 | 429 | 1.05e-92 | 295 |
MS.gene040156.t1 | MTR_1g095650 | 37.731 | 432 | 259 | 6 | 73 | 500 | 4 | 429 | 1.05e-92 | 295 |
MS.gene040156.t1 | MTR_6g021800 | 37.355 | 431 | 262 | 5 | 73 | 500 | 4 | 429 | 4.34e-92 | 293 |
MS.gene040156.t1 | MTR_6g021805 | 37.355 | 431 | 262 | 5 | 73 | 500 | 4 | 429 | 4.34e-92 | 293 |
MS.gene040156.t1 | MTR_1g024175 | 36.321 | 424 | 262 | 5 | 77 | 497 | 8 | 426 | 1.56e-88 | 285 |
MS.gene040156.t1 | MTR_1g013680 | 36.552 | 435 | 263 | 7 | 73 | 500 | 4 | 432 | 4.33e-87 | 281 |
MS.gene040156.t1 | MTR_8g087950 | 35.670 | 485 | 284 | 11 | 24 | 501 | 237 | 700 | 2.49e-84 | 281 |
MS.gene040156.t1 | MTR_8g087950 | 35.670 | 485 | 284 | 11 | 24 | 501 | 310 | 773 | 6.81e-84 | 281 |
MS.gene040156.t1 | MTR_1g085410 | 35.446 | 426 | 267 | 5 | 73 | 495 | 4 | 424 | 1.98e-83 | 271 |
MS.gene040156.t1 | MTR_8g014590 | 35.897 | 429 | 265 | 6 | 77 | 500 | 8 | 431 | 5.91e-81 | 265 |
MS.gene040156.t1 | MTR_1g101870 | 34.571 | 431 | 269 | 7 | 73 | 500 | 4 | 424 | 1.24e-72 | 251 |
MS.gene040156.t1 | MTR_1g101870 | 34.571 | 431 | 269 | 7 | 73 | 500 | 4 | 424 | 1.97e-72 | 252 |
MS.gene040156.t1 | MTR_2g080210 | 33.643 | 431 | 248 | 7 | 72 | 500 | 5 | 399 | 6.02e-72 | 240 |
MS.gene040156.t1 | MTR_2g082730 | 32.564 | 433 | 267 | 7 | 74 | 501 | 5 | 417 | 4.74e-71 | 240 |
MS.gene040156.t1 | MTR_8g008740 | 39.744 | 312 | 182 | 4 | 77 | 385 | 8 | 316 | 9.95e-70 | 236 |
MS.gene040156.t1 | MTR_5g037350 | 30.382 | 497 | 293 | 9 | 70 | 523 | 11 | 497 | 8.05e-67 | 230 |
MS.gene040156.t1 | MTR_1g089520 | 31.455 | 426 | 268 | 7 | 73 | 495 | 5 | 409 | 1.11e-66 | 229 |
MS.gene040156.t1 | MTR_1g095650 | 36.527 | 334 | 202 | 6 | 171 | 500 | 1 | 328 | 1.03e-59 | 204 |
MS.gene040156.t1 | MTR_2g082665 | 30.023 | 433 | 252 | 7 | 74 | 501 | 5 | 391 | 2.25e-57 | 202 |
MS.gene040156.t1 | MTR_8g013910 | 31.519 | 441 | 261 | 13 | 73 | 495 | 4 | 421 | 2.45e-56 | 198 |
MS.gene040156.t1 | MTR_2g037420 | 28.868 | 433 | 257 | 7 | 73 | 500 | 4 | 390 | 3.47e-51 | 184 |
MS.gene040156.t1 | MTR_1g024165 | 45.652 | 138 | 75 | 0 | 77 | 214 | 12 | 149 | 1.07e-36 | 135 |
MS.gene040156.t1 | MTR_1g101880 | 41.722 | 151 | 88 | 0 | 73 | 223 | 4 | 154 | 8.38e-34 | 130 |
MS.gene040156.t1 | MTR_3g076660 | 26.126 | 444 | 269 | 12 | 73 | 501 | 89 | 488 | 3.45e-29 | 122 |
MS.gene040156.t1 | MTR_2g021300 | 28.693 | 352 | 185 | 12 | 74 | 404 | 48 | 354 | 2.72e-28 | 119 |
MS.gene040156.t1 | MTR_7g094460 | 26.432 | 454 | 244 | 15 | 74 | 502 | 61 | 449 | 3.31e-27 | 115 |
MS.gene040156.t1 | MTR_1g112460 | 28.986 | 276 | 151 | 6 | 224 | 495 | 1 | 235 | 1.95e-26 | 109 |
MS.gene040156.t1 | MTR_8g014950 | 36.190 | 105 | 67 | 0 | 69 | 173 | 1 | 105 | 3.07e-19 | 84.0 |
MS.gene040156.t1 | MTR_1g495735 | 28.358 | 201 | 131 | 3 | 311 | 500 | 107 | 305 | 1.13e-18 | 87.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040156.t1 | AT1G18070 | 75.712 | 527 | 103 | 2 | 1 | 502 | 1 | 527 | 0.0 | 815 |
MS.gene040156.t1 | AT1G18070 | 75.712 | 527 | 103 | 2 | 1 | 502 | 1 | 527 | 0.0 | 815 |
MS.gene040156.t1 | AT1G18070 | 74.164 | 538 | 103 | 3 | 1 | 502 | 1 | 538 | 0.0 | 806 |
MS.gene040156.t1 | AT5G60390 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT5G60390 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT5G60390 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07920 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07940 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07940 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07940 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07940 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT1G07930 | 37.500 | 432 | 260 | 6 | 73 | 500 | 4 | 429 | 1.08e-92 | 295 |
MS.gene040156.t1 | AT5G10630 | 37.118 | 458 | 269 | 11 | 54 | 501 | 216 | 664 | 1.63e-92 | 301 |
MS.gene040156.t1 | AT5G10630 | 37.118 | 458 | 269 | 11 | 54 | 501 | 217 | 665 | 1.67e-92 | 301 |
MS.gene040156.t1 | AT5G10630 | 37.118 | 458 | 269 | 11 | 54 | 501 | 217 | 665 | 1.67e-92 | 301 |
MS.gene040156.t1 | AT5G10630 | 37.118 | 458 | 269 | 11 | 54 | 501 | 287 | 735 | 6.53e-92 | 301 |
MS.gene040156.t1 | AT5G10630 | 37.118 | 458 | 269 | 11 | 54 | 501 | 292 | 740 | 9.66e-92 | 301 |
MS.gene040156.t1 | AT1G18060 | 77.914 | 163 | 35 | 1 | 530 | 691 | 62 | 224 | 4.92e-88 | 275 |
MS.gene040156.t1 | AT1G07930 | 44.141 | 256 | 136 | 4 | 73 | 325 | 4 | 255 | 1.70e-65 | 221 |
MS.gene040156.t1 | AT4G20360 | 25.450 | 444 | 272 | 12 | 73 | 501 | 76 | 475 | 1.81e-31 | 129 |
MS.gene040156.t1 | AT4G20360 | 25.450 | 444 | 272 | 12 | 73 | 501 | 76 | 475 | 1.81e-31 | 129 |
MS.gene040156.t1 | AT4G02930 | 26.974 | 456 | 238 | 17 | 74 | 501 | 65 | 453 | 1.27e-26 | 114 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAACAAGGTTCACCATTT+TGG | 0.149732 | 4.4:+659477 | MS.gene040156:CDS |
TTCATGGGCTTCTTTGTCTT+TGG | 0.167813 | 4.4:-661998 | None:intergenic |
CTTATTTGGCATGATGAAAA+TGG | 0.174217 | 4.4:-661026 | None:intergenic |
ATATATCCATTTCGGAAATT+AGG | 0.186205 | 4.4:+664248 | MS.gene040156:CDS |
AATTTACGCGTTCGATTATC+TGG | 0.191475 | 4.4:+661212 | MS.gene040156:CDS |
CACTTGAATGTTGTGTTTAT+TGG | 0.216054 | 4.4:+657376 | MS.gene040156:CDS |
TCTTTGAATTTGTCAATTAT+AGG | 0.243891 | 4.4:-660947 | None:intergenic |
TGATAAATTGTTAGGCAAAA+AGG | 0.263160 | 4.4:+667740 | MS.gene040156:intron |
ATCGAAAACGGTGTATTTCT+TGG | 0.273425 | 4.4:+667763 | MS.gene040156:CDS |
CTATATATATTGATGAAAAT+CGG | 0.306807 | 4.4:+661165 | MS.gene040156:CDS |
ACAGTACCTGAAAGGTCTTT+TGG | 0.308878 | 4.4:-660805 | None:intergenic |
AACTCAGTAACTGCTGATAT+TGG | 0.335584 | 4.4:-661763 | None:intergenic |
GCTTGTGGTTGTCAATAAAA+TGG | 0.335899 | 4.4:+659989 | MS.gene040156:CDS |
GATATAGCAGAAGACATTAA+TGG | 0.338752 | 4.4:+656305 | MS.gene040156:intron |
GAGATCCCAAAAGACCTTTC+AGG | 0.348919 | 4.4:+660799 | MS.gene040156:CDS |
ACTTGAATGTTGTGTTTATT+GGG | 0.356570 | 4.4:+657377 | MS.gene040156:CDS |
GATGCACCACTGATCATATT+AGG | 0.362256 | 4.4:-659725 | None:intergenic |
ACAGATGGAGTGGCAGCGTT+GGG | 0.367829 | 4.4:+664199 | MS.gene040156:CDS |
ATATAGCAGAAGACATTAAT+GGG | 0.371193 | 4.4:+656306 | MS.gene040156:intron |
TAATTTCCGAAATGGATATA+TGG | 0.371551 | 4.4:-664246 | None:intergenic |
AAGTTGAATCTGGTACTATT+CGG | 0.381513 | 4.4:+660993 | MS.gene040156:CDS |
TGAGCCTGAACCTCCTGCTT+TGG | 0.382030 | 4.4:-657129 | None:intergenic |
GGTGCATCTCAAGCTGATAT+TGG | 0.389282 | 4.4:+659740 | MS.gene040156:CDS |
GAAGTGGAGGCACTGCATTT+TGG | 0.392068 | 4.4:+667992 | MS.gene040156:CDS |
ACTCACAGGTGCATCCAAAA+TGG | 0.393834 | 4.4:-659491 | None:intergenic |
TATCCTGATTGCTTTAGAAA+TGG | 0.394318 | 4.4:-660158 | None:intergenic |
AGACATGGGAACTGTTGTTA+TGG | 0.396475 | 4.4:+660967 | MS.gene040156:CDS |
ATGCAACCTAATTTCCGAAA+TGG | 0.398201 | 4.4:-664254 | None:intergenic |
CCTCCCTAGTTGTGGAAAAT+CGG | 0.399225 | 4.4:-663599 | None:intergenic |
TGTTGTATTATGCCGTGTTC+AGG | 0.399737 | 4.4:+662051 | MS.gene040156:CDS |
CGGAAGGGAGAGTTTGAAAC+TGG | 0.403475 | 4.4:+659900 | MS.gene040156:CDS |
GAACCCATGAGCCCCGATAT+TGG | 0.406128 | 4.4:-660684 | None:intergenic |
GACCACTGAGGAAAAGTATC+TGG | 0.408471 | 4.4:-658480 | None:intergenic |
AAAGTTCTATTTGTAAAGAA+TGG | 0.414531 | 4.4:+662025 | MS.gene040156:CDS |
CAGGTACATGGCTTATATTA+TGG | 0.421104 | 4.4:+659261 | MS.gene040156:intron |
ATTCCATTTCTAAAGCAATC+AGG | 0.422988 | 4.4:+660155 | MS.gene040156:CDS |
AGTCTGCCATATATCCATTT+CGG | 0.423205 | 4.4:+664240 | MS.gene040156:CDS |
GAGAACCTTCGAATAAAAGT+TGG | 0.424151 | 4.4:+667853 | MS.gene040156:CDS |
AGATCCAAAGCAGGAGGTTC+AGG | 0.426022 | 4.4:+657125 | MS.gene040156:intron |
AGTTGAATCTGGTACTATTC+GGG | 0.426995 | 4.4:+660994 | MS.gene040156:CDS |
ACAAATCAGCCTTGGACAAA+AGG | 0.429622 | 4.4:+667891 | MS.gene040156:CDS |
TGGACGATCCTACAGTAAAC+TGG | 0.432517 | 4.4:+660009 | MS.gene040156:CDS |
TGATAGTATCGAAGTTCCTA+TGG | 0.435934 | 4.4:+660776 | MS.gene040156:CDS |
TTTACCAATATCGGGGCTCA+TGG | 0.437076 | 4.4:+660680 | MS.gene040156:CDS |
TGGATAGAAGCATTTGTTCA+TGG | 0.440243 | 4.4:+660724 | MS.gene040156:CDS |
AGGATTCCCCTGGGAGAACC+TGG | 0.442328 | 4.4:+666930 | MS.gene040156:CDS |
ATCGGACAATTAACATTTGA+AGG | 0.443887 | 4.4:+667790 | MS.gene040156:CDS |
TACTGAGTTTGTTGCTCAGT+TGG | 0.450156 | 4.4:+661777 | MS.gene040156:CDS |
GACATGGGAACTGTTGTTAT+GGG | 0.452289 | 4.4:+660968 | MS.gene040156:CDS |
TGTTTGAATGGTAGATATTG+AGG | 0.455232 | 4.4:+656152 | MS.gene040156:intron |
GTTATGGGCAAAGTTGAATC+TGG | 0.463017 | 4.4:+660983 | MS.gene040156:CDS |
GATGCTGGCAAGTCTACAAC+TGG | 0.465080 | 4.4:+658454 | MS.gene040156:intron |
GACAGATGGAGTGGCAGCGT+TGG | 0.466982 | 4.4:+664198 | MS.gene040156:CDS |
GCATTTGTTCATGGTGGGAT+GGG | 0.469608 | 4.4:+660733 | MS.gene040156:CDS |
GAAGAAGAAGACATATTGGC+TGG | 0.469904 | 4.4:+661239 | MS.gene040156:CDS |
TATATATATTGATGAAAATC+GGG | 0.470910 | 4.4:+661166 | MS.gene040156:CDS |
ACACGTTGTCTAGTAATTCA+AGG | 0.482554 | 4.4:-661804 | None:intergenic |
TCTTGACACCCTTGGAGGAA+AGG | 0.485221 | 4.4:+666910 | MS.gene040156:CDS |
TCTTTACAGCTTGACTCAGC+AGG | 0.489167 | 4.4:+656186 | MS.gene040156:CDS |
CAGGGGAAGACTGTTGAAGT+TGG | 0.489807 | 4.4:+659433 | MS.gene040156:intron |
AAATTTATATGCCAGGTACA+TGG | 0.491683 | 4.4:+659249 | MS.gene040156:intron |
CAGGGGAATCCTTTCCTCCA+AGG | 0.495511 | 4.4:-666919 | None:intergenic |
AGATGAAGAAGTCGAGCAAA+CGG | 0.497995 | 4.4:+657345 | MS.gene040156:CDS |
AAAGCAGGAGGTTCAGGCTC+AGG | 0.498013 | 4.4:+657131 | MS.gene040156:CDS |
TAGGAACTTCGATACTATCA+AGG | 0.500562 | 4.4:-660773 | None:intergenic |
TTGATTTGTAGCGAAAGATA+AGG | 0.502056 | 4.4:+657306 | MS.gene040156:intron |
AAACCTCTACAAATCAGCCT+TGG | 0.505462 | 4.4:+667883 | MS.gene040156:CDS |
CGGGTTAAACGCGCTGGACC+TGG | 0.510881 | 4.4:+661185 | MS.gene040156:CDS |
GACTGTTTCAGATCCAAAGC+AGG | 0.512619 | 4.4:+657116 | MS.gene040156:intron |
CAGTAAACTGGTCAAAAGAA+AGG | 0.514638 | 4.4:+660021 | MS.gene040156:CDS |
CTTGGAGGAAAGGATTCCCC+TGG | 0.519361 | 4.4:+666920 | MS.gene040156:CDS |
AGCATTTGTTCATGGTGGGA+TGG | 0.519536 | 4.4:+660732 | MS.gene040156:CDS |
GCTGTTGAGGCCGAGCCAAA+AGG | 0.521124 | 4.4:+657153 | MS.gene040156:CDS |
TGTCCAAGGCTGATTTGTAG+AGG | 0.525164 | 4.4:-667886 | None:intergenic |
TCAGGTAATTTCTGCTCGGA+AGG | 0.526277 | 4.4:+659884 | MS.gene040156:intron |
GGTGTATTTCTTGGACCTAT+CGG | 0.527087 | 4.4:+667772 | MS.gene040156:CDS |
AGGGGAATCCTTTCCTCCAA+GGG | 0.528136 | 4.4:-666918 | None:intergenic |
ATAAGCATCCAGGTTCTCCC+AGG | 0.529448 | 4.4:-666938 | None:intergenic |
TCAAGCTGATATTGGAGTGT+TGG | 0.530193 | 4.4:+659748 | MS.gene040156:CDS |
TCAAATGTTAATTGTCCGAT+AGG | 0.532866 | 4.4:-667787 | None:intergenic |
GTTGTGTTTATTGGGCATGT+TGG | 0.533975 | 4.4:+657385 | MS.gene040156:CDS |
TGTTGATAATGTTGATAAGA+TGG | 0.534035 | 4.4:+656358 | MS.gene040156:CDS |
TGTTGAAGAAGAAGACATAT+TGG | 0.539132 | 4.4:+661235 | MS.gene040156:CDS |
ACTTCTTCATCTTGAACAGA+AGG | 0.541085 | 4.4:-657334 | None:intergenic |
TTTGAAACTGGATATGAGAG+AGG | 0.541153 | 4.4:+659912 | MS.gene040156:CDS |
GAAAATCGGGTTAAACGCGC+TGG | 0.544322 | 4.4:+661179 | MS.gene040156:CDS |
AATGTTGATAAGATGGATGA+AGG | 0.544900 | 4.4:+656365 | MS.gene040156:CDS |
GCTGAAAGAATCTCTTCTGC+TGG | 0.545166 | 4.4:-666845 | None:intergenic |
TTACCAATATCGGGGCTCAT+GGG | 0.548856 | 4.4:+660681 | MS.gene040156:CDS |
GGCATTTCTGCAGAGACAGA+TGG | 0.549533 | 4.4:+664184 | MS.gene040156:CDS |
GGGTTCGTCTTGTCTAGTGT+TGG | 0.550042 | 4.4:+661260 | MS.gene040156:CDS |
AGGACAAAAGTCGAGAAAGC+TGG | 0.550645 | 4.4:+658545 | MS.gene040156:CDS |
CAAAAGGAAGACAAGGAACC+AGG | 0.550923 | 4.4:+667907 | MS.gene040156:CDS |
TATTAGGAACATAGCTCTTG+TGG | 0.554344 | 4.4:-659709 | None:intergenic |
AATTGACAAATTCAAAGACA+TGG | 0.557832 | 4.4:+660952 | MS.gene040156:CDS |
GGTTCAGGCTCAGGCTGTTG+AGG | 0.561412 | 4.4:+657140 | MS.gene040156:CDS |
AAAATACGAGAAAGAAGCTA+AGG | 0.561519 | 4.4:+658525 | MS.gene040156:CDS |
GTTGCTCGAGGCCGAAGTGG+AGG | 0.570500 | 4.4:+667979 | MS.gene040156:CDS |
AAATGCAGCTAAGACAAGAA+AGG | 0.570671 | 4.4:+666820 | MS.gene040156:intron |
GGGTGTGACTAAGCTGCTTG+TGG | 0.573585 | 4.4:+659974 | MS.gene040156:CDS |
GCACATCCACTCTGTAGTTG+AGG | 0.575114 | 4.4:+661940 | MS.gene040156:CDS |
AAATGAGGAGGAGAGAGTAA+AGG | 0.581613 | 4.4:+659288 | MS.gene040156:CDS |
AATCTCTGAACAGCTGTGAG+AGG | 0.593439 | 4.4:-667091 | None:intergenic |
AGGTTCACTCTTCGCACTGA+AGG | 0.593832 | 4.4:+663619 | MS.gene040156:CDS |
TTATATTATGGACACAAATG+AGG | 0.594698 | 4.4:+659273 | MS.gene040156:CDS |
CCTTGGACAAAAGGAAGACA+AGG | 0.595626 | 4.4:+667900 | MS.gene040156:CDS |
TCAATCAGGTAATTTCTGCT+CGG | 0.598965 | 4.4:+659880 | MS.gene040156:intron |
AAGAAGAAGACATATTGGCT+GGG | 0.601167 | 4.4:+661240 | MS.gene040156:CDS |
GATAGTATCGAAGTTCCTAT+GGG | 0.604305 | 4.4:+660777 | MS.gene040156:CDS |
TTCTGCAGAGACAGATGGAG+TGG | 0.604814 | 4.4:+664189 | MS.gene040156:CDS |
ATTGACAAATTCAAAGACAT+GGG | 0.606716 | 4.4:+660953 | MS.gene040156:CDS |
TTGGGGCATAATTGACAGCA+TGG | 0.609163 | 4.4:+664217 | MS.gene040156:CDS |
CAGATGGAGTGGCAGCGTTG+GGG | 0.611952 | 4.4:+664200 | MS.gene040156:CDS |
CAGGTAATTTCTGCTCGGAA+GGG | 0.612686 | 4.4:+659885 | MS.gene040156:intron |
TAGAAGCATTTGTTCATGGT+GGG | 0.615928 | 4.4:+660728 | MS.gene040156:CDS |
TAAGCATCCAGGTTCTCCCA+GGG | 0.619857 | 4.4:-666937 | None:intergenic |
GCTGTTGCTCGAGGCCGAAG+TGG | 0.620105 | 4.4:+667976 | MS.gene040156:CDS |
AGGGTGTCAAGAAAAGAAGA+AGG | 0.621327 | 4.4:-666899 | None:intergenic |
AGACAAGGAACCAGGTACAA+AGG | 0.621877 | 4.4:+667915 | MS.gene040156:CDS |
TTAGAAATACAGTACCTGAA+AGG | 0.621965 | 4.4:-660813 | None:intergenic |
AGCAGAAGACATTAATGGGG+TGG | 0.623607 | 4.4:+656310 | MS.gene040156:intron |
TCAAGGGCTTCAAATAAGCA+AGG | 0.633378 | 4.4:-660756 | None:intergenic |
CATTTGAAGGCAGACTGTCG+TGG | 0.634559 | 4.4:+667803 | MS.gene040156:CDS |
TATGTTCCTAATATGATCAG+TGG | 0.635810 | 4.4:+659719 | MS.gene040156:CDS |
AGAGTGAACCTCCCTAGTTG+TGG | 0.640426 | 4.4:-663607 | None:intergenic |
TTGGAGGAAAGGATTCCCCT+GGG | 0.641606 | 4.4:+666921 | MS.gene040156:CDS |
GAATCTGGTACTATTCGGGA+GGG | 0.642713 | 4.4:+660998 | MS.gene040156:CDS |
TTGAATGGTAGATATTGAGG+AGG | 0.642938 | 4.4:+656155 | MS.gene040156:intron |
TGAATCTGGTACTATTCGGG+AGG | 0.643294 | 4.4:+660997 | MS.gene040156:CDS |
GCTGGCAAGTCTACAACTGG+AGG | 0.646837 | 4.4:+658457 | MS.gene040156:CDS |
AGGAACTTCGATACTATCAA+GGG | 0.651603 | 4.4:-660772 | None:intergenic |
GAAACTGGATATGAGAGAGG+TGG | 0.654114 | 4.4:+659915 | MS.gene040156:CDS |
TGTTTCAGATCCAAAGCAGG+AGG | 0.654241 | 4.4:+657119 | MS.gene040156:intron |
ATAGAAGCATTTGTTCATGG+TGG | 0.659258 | 4.4:+660727 | MS.gene040156:CDS |
CACATTCCTCAACTACAGAG+TGG | 0.659521 | 4.4:-661946 | None:intergenic |
TATTATGGACACAAATGAGG+AGG | 0.661413 | 4.4:+659276 | MS.gene040156:CDS |
AAAATGCAGTGCCTCCACTT+CGG | 0.663787 | 4.4:-667990 | None:intergenic |
GAGGAAATAGCTGTTGCTCG+AGG | 0.672148 | 4.4:+667967 | MS.gene040156:CDS |
AAGCATCCAGGTTCTCCCAG+GGG | 0.717216 | 4.4:-666936 | None:intergenic |
TATAGCAGAAGACATTAATG+GGG | 0.734555 | 4.4:+656307 | MS.gene040156:intron |
GATCATCAACCTGACCACTG+AGG | 0.782429 | 4.4:-658492 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 655451 | 668041 | 655451 | ID=MS.gene040156 |
chr4.4 | mRNA | 655451 | 668041 | 655451 | ID=MS.gene040156.t1;Parent=MS.gene040156 |
chr4.4 | exon | 655451 | 655454 | 655451 | ID=MS.gene040156.t1.exon1;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 655451 | 655454 | 655451 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 656166 | 656207 | 656166 | ID=MS.gene040156.t1.exon2;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 656166 | 656207 | 656166 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 656315 | 656386 | 656315 | ID=MS.gene040156.t1.exon3;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 656315 | 656386 | 656315 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 657127 | 657174 | 657127 | ID=MS.gene040156.t1.exon4;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 657127 | 657174 | 657127 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 657317 | 657406 | 657317 | ID=MS.gene040156.t1.exon5;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 657317 | 657406 | 657317 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 658455 | 658566 | 658455 | ID=MS.gene040156.t1.exon6;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 658455 | 658566 | 658455 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 659264 | 659309 | 659264 | ID=MS.gene040156.t1.exon7;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 659264 | 659309 | 659264 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 659436 | 659507 | 659436 | ID=MS.gene040156.t1.exon8;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 659436 | 659507 | 659436 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 659707 | 659769 | 659707 | ID=MS.gene040156.t1.exon9;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 659707 | 659769 | 659707 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 659888 | 660042 | 659888 | ID=MS.gene040156.t1.exon10;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 659888 | 660042 | 659888 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 660130 | 660194 | 660130 | ID=MS.gene040156.t1.exon11;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 660130 | 660194 | 660130 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 660670 | 660820 | 660670 | ID=MS.gene040156.t1.exon12;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 660670 | 660820 | 660670 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 660943 | 661048 | 660943 | ID=MS.gene040156.t1.exon13;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 660943 | 661048 | 660943 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 661146 | 661281 | 661146 | ID=MS.gene040156.t1.exon14;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 661146 | 661281 | 661146 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 661758 | 661822 | 661758 | ID=MS.gene040156.t1.exon15;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 661758 | 661822 | 661758 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 661908 | 662072 | 661908 | ID=MS.gene040156.t1.exon16;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 661908 | 662072 | 661908 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 663568 | 663640 | 663568 | ID=MS.gene040156.t1.exon17;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 663568 | 663640 | 663568 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 663730 | 663763 | 663730 | ID=MS.gene040156.t1.exon18;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 663730 | 663763 | 663730 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 664181 | 664269 | 664181 | ID=MS.gene040156.t1.exon19;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 664181 | 664269 | 664181 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 666828 | 666973 | 666828 | ID=MS.gene040156.t1.exon20;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 666828 | 666973 | 666828 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 667064 | 667123 | 667064 | ID=MS.gene040156.t1.exon21;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 667064 | 667123 | 667064 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
chr4.4 | exon | 667754 | 668041 | 667754 | ID=MS.gene040156.t1.exon22;Parent=MS.gene040156.t1 |
chr4.4 | CDS | 667754 | 668041 | 667754 | ID=cds.MS.gene040156.t1;Parent=MS.gene040156.t1 |
Gene Sequence |
Protein sequence |