AlfalfaGEDB | MS.gene22888

M. sativa cultivar XinJiangDaYe / MS.gene22888

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22888.t1	XP_003626377.2	97.7	176	4	0	1	176	1	176	1.00E-95	359.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22888.t1	O34569	29.7	175	115	4	4	172	5	177	1.1e-13	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22888.t1	G7L0S4	97.7	176	4	0	1	176	1	176	7.3e-96	359.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene22888.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene22888	-0.808007	3.83E-50	-1.69E-46
MS.gene049281	MS.gene22888	0.837175	6.07E-57	-1.69E-46
MS.gene049285	MS.gene22888	-0.805988	1.02E-49	-1.69E-46
MS.gene049320	MS.gene22888	-0.833556	4.98E-56	-1.69E-46
MS.gene049483	MS.gene22888	0.802051	6.74E-49	-1.69E-46
MS.gene050163	MS.gene22888	-0.812712	3.69E-51	-1.69E-46
MS.gene050165	MS.gene22888	-0.814137	1.80E-51	-1.69E-46
MS.gene050493	MS.gene22888	0.905783	2.98E-80	-1.69E-46
MS.gene050504	MS.gene22888	-0.830678	2.57E-55	-1.69E-46
MS.gene050612	MS.gene22888	-0.81839	2.01E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene001032	MS.gene22888	PPI
MS.gene001033	MS.gene22888	PPI
MS.gene001034	MS.gene22888	PPI
MS.gene001037	MS.gene22888	PPI
MS.gene001038	MS.gene22888	PPI
MS.gene006417	MS.gene22888	PPI
MS.gene006418	MS.gene22888	PPI
MS.gene024854	MS.gene22888	PPI
MS.gene024855	MS.gene22888	PPI
MS.gene024858	MS.gene22888	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22888.t1	MTR_7g114410	97.727	176	4	0	1	176	1	176	2.02e-127	355
MS.gene22888.t1	MTR_7g114410	97.436	156	4	0	1	156	1	156	4.11e-112	316
MS.gene22888.t1	MTR_3g463610	62.573	171	61	1	4	171	3	173	1.21e-79	236
MS.gene22888.t1	MTR_7g024780	58.523	176	72	1	1	176	1	175	4.06e-71	213
MS.gene22888.t1	MTR_7g024765	60.920	174	66	2	1	174	1	172	4.52e-67	203
MS.gene22888.t1	MTR_7g024760	59.195	174	69	2	1	174	1	172	7.32e-67	202
MS.gene22888.t1	MTR_1g103150	46.784	171	86	2	4	171	19	187	6.47e-48	154
MS.gene22888.t1	MTR_1g103110	45.614	171	88	2	4	171	19	187	7.08e-47	152
MS.gene22888.t1	MTR_5g006450	42.442	172	96	1	3	171	16	187	1.47e-46	151
MS.gene22888.t1	MTR_5g006520	44.444	171	92	1	4	171	1735	1905	4.15e-45	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22888.t1	AT3G22560	55.422	166	72	1	8	171	7	172	9.75e-64	194
MS.gene22888.t1	AT2G32030	47.305	167	84	2	8	173	24	187	4.77e-57	178
MS.gene22888.t1	AT2G32020	47.701	174	87	2	1	173	12	182	1.17e-56	177

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Find 0 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACATCTTTGATGAAAGTT+AGG	-	51741:26675-26694	MS.gene22888:intergenic	30.0%
GACATCTTTGATGAAAGTTA+GGG	-	51741:26674-26693	MS.gene22888:intergenic	30.0%
AAGTAACCAAAAACATCCGA+TGG	+	51741:26623-26642	MS.gene22888:CDS	35.0%
ACGTTGACGATTTCATGTTA+TGG	+	51741:26587-26606	MS.gene22888:CDS	35.0%
ATACACAGAAACAAAACCGA+TGG	-	51741:26743-26762	MS.gene22888:intergenic	35.0%
ATGGAAAACTTGCAATTCGA+GGG	+	51741:26642-26661	MS.gene22888:CDS	35.0%
CAGGAGACAAAATAATCAAC+AGG	-	51741:27060-27079	MS.gene22888:intergenic	35.0%
CGTTGACGATTTCATGTTAT+GGG	+	51741:26588-26607	MS.gene22888:CDS	35.0%
GAGACAAAATAATCAACAGG+AGG	-	51741:27057-27076	MS.gene22888:intergenic	35.0%
AAAGACAGCCAAATCCATGA+TGG	-	51741:27010-27029	MS.gene22887:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
51741	gene	26535	27092	26535	ID=MS.gene22888
51741	mRNA	26535	27092	26535	ID=MS.gene22888.t1;Parent=MS.gene22888
51741	exon	26535	27092	26535	ID=MS.gene22888.t1.exon1;Parent=MS.gene22888.t1
51741	CDS	26535	27092	26535	ID=cds.MS.gene22888.t1;Parent=MS.gene22888.t1

Gene Sequence

>MS.gene22888

ATGGCAAAGGTGGATCTATCTAGGATATCTCTGAGGCCATTCAAGCTAACAGACGTTGACGATTTCATGTTATGGGCAGGGGACGATGAAGTAACCAAAAACATCCGATGGAAAACTTGCAATTCGAGGGAAGAAGCCCTAACTTTCATCAAAGATGTCTGCATACCTCACCCTTGGCGTCATTCGATCTGTCTCGACGACCGTTCCATCGGTTTTGTTTCTGTGTATCCTTGGTCAGGTGATGATAGGTGCAAAGCTGACATAGGTTATGCTGTTGCTTCTAACTATTGGGGTCAAGGGATAGCCACAAAAGCAATCAAAATTGCTCTGTCTCAAGTGTTTAATGATTTTTCTGATTTGTTAAGGTTGCAGGCTTTTACTTACGTGGATAACAAGGCTTCTCAAAGAGTTTTGGAAAAGGCTGGGTTCCTTAGAGAGGGTGTTCTTAGAAAGTATACTTATATCAAAGGTACCATCATGGATTTGGCTGTCTTTAGTTTTTTGTCAACAGATGAAATTCCTCCTGTTGATTATTTTGTCTCCTGTTACTCTTTATGA

Protein sequence

>MS.gene22888.t1

MAKVDLSRISLRPFKLTDVDDFMLWAGDDEVTKNIRWKTCNSREEALTFIKDVCIPHPWRHSICLDDRSIGFVSVYPWSGDDRCKADIGYAVASNYWGQGIATKAIKIALSQVFNDFSDLLRLQAFTYVDNKASQRVLEKAGFLREGVLRKYTYIKGTIMDLAVFSFLSTDEIPPVDYFVSCYSL