AlfalfaGEDB | MS.gene29937

M. sativa cultivar XinJiangDaYe / MS.gene29937

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF13302.10

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29937.t1	XP_003626377.2	97.4	156	4	0	1	156	1	156	4.40E-84	320.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29937.t1	O34569	29.3	157	103	4	4	154	5	159	4.3e-11	69.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29937.t1	G7L0S4	97.4	156	4	0	1	156	1	156	3.2e-84	320.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene29937.t1	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene29937	-0.802431	5.63E-49	-1.69E-46
MS.gene049281	MS.gene29937	0.832613	8.55E-56	-1.69E-46
MS.gene049285	MS.gene29937	-0.800035	1.74E-48	-1.69E-46
MS.gene049320	MS.gene29937	-0.826565	2.53E-54	-1.69E-46
MS.gene050163	MS.gene29937	-0.806272	8.92E-50	-1.69E-46
MS.gene050165	MS.gene29937	-0.806885	6.62E-50	-1.69E-46
MS.gene050493	MS.gene29937	0.901333	2.98E-78	-1.69E-46
MS.gene050504	MS.gene29937	-0.825081	5.69E-54	-1.69E-46
MS.gene050612	MS.gene29937	-0.812177	4.83E-51	-1.69E-46
MS.gene050883	MS.gene29937	0.815267	1.01E-51	-1.69E-46
MS.gene051127	MS.gene29937	0.824821	6.56E-54	-1.69E-46
MS.gene053420	MS.gene29937	0.805745	1.15E-49	-1.69E-46
MS.gene053561	MS.gene29937	0.820465	6.76E-53	-1.69E-46
MS.gene05470	MS.gene29937	-0.800431	1.45E-48	-1.69E-46
MS.gene054954	MS.gene29937	-0.809202	2.13E-50	-1.69E-46
MS.gene054959	MS.gene29937	0.816084	6.64E-52	-1.69E-46
MS.gene055154	MS.gene29937	0.811862	5.66E-51	-1.69E-46
MS.gene055362	MS.gene29937	-0.825189	5.37E-54	-1.69E-46
MS.gene056761	MS.gene29937	0.857111	2.04E-62	-1.69E-46
MS.gene058268	MS.gene29937	0.81629	5.97E-52	-1.69E-46
MS.gene058269	MS.gene29937	0.806099	9.70E-50	-1.69E-46
MS.gene058419	MS.gene29937	-0.808017	3.81E-50	-1.69E-46
MS.gene059022	MS.gene29937	-0.852237	5.27E-61	-1.69E-46
MS.gene059677	MS.gene29937	-0.827386	1.61E-54	-1.69E-46
MS.gene060337	MS.gene29937	0.846359	2.28E-59	-1.69E-46
MS.gene060703	MS.gene29937	-0.808066	3.72E-50	-1.69E-46
MS.gene06077	MS.gene29937	-0.820732	5.87E-53	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene29937	MS.gene001037	PPI
MS.gene29937	MS.gene21833	PPI
MS.gene29937	MS.gene001038	PPI
MS.gene29937	MS.gene071357	PPI
MS.gene29937	MS.gene21828	PPI
MS.gene29937	MS.gene001033	PPI
MS.gene29937	MS.gene95802	PPI
MS.gene29937	MS.gene024854	PPI
MS.gene29937	MS.gene83474	PPI
MS.gene29937	MS.gene21830	PPI
MS.gene29937	MS.gene001034	PPI
MS.gene29937	MS.gene070945	PPI
MS.gene29937	MS.gene49472	PPI
MS.gene29937	MS.gene72809	PPI
MS.gene29937	MS.gene071361	PPI
MS.gene29937	MS.gene34370	PPI
MS.gene29937	MS.gene043813	PPI
MS.gene29937	MS.gene21831	PPI
MS.gene043815	MS.gene29937	PPI
MS.gene024858	MS.gene29937	PPI
MS.gene024855	MS.gene29937	PPI
MS.gene29937	MS.gene34371	PPI
MS.gene29937	MS.gene82121	PPI
MS.gene29937	MS.gene006417	PPI
MS.gene29937	MS.gene028111	PPI
MS.gene29937	MS.gene21827	PPI
MS.gene29937	MS.gene070944	PPI
MS.gene29937	MS.gene49470	PPI
MS.gene29937	MS.gene77154	PPI
MS.gene29937	MS.gene49468	PPI
MS.gene29937	MS.gene024859	PPI
MS.gene29937	MS.gene001032	PPI
MS.gene29937	MS.gene49471	PPI
MS.gene29937	MS.gene024857	PPI
MS.gene29937	MS.gene006418	PPI
MS.gene29937	MS.gene95801	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29937.t1	MTR_7g114410	97.436	156	4	0	1	156	1	156	2.34e-112	315
MS.gene29937.t1	MTR_7g114410	97.436	156	4	0	1	156	1	156	3.74e-112	315
MS.gene29937.t1	MTR_3g463610	63.462	156	54	1	4	156	3	158	9.01e-74	220
MS.gene29937.t1	MTR_7g024780	58.333	156	64	1	1	156	1	155	3.63e-62	189
MS.gene29937.t1	MTR_7g024760	58.333	156	63	2	1	156	1	154	3.95e-57	176
MS.gene29937.t1	MTR_7g024765	60.667	150	57	2	7	156	7	154	4.55e-57	176
MS.gene29937.t1	MTR_5g006450	42.675	157	87	1	3	156	16	172	2.12e-43	142
MS.gene29937.t1	MTR_1g103150	47.436	156	77	2	4	156	19	172	2.91e-43	142
MS.gene29937.t1	MTR_1g103110	46.154	156	79	2	4	156	19	172	7.18e-43	140
MS.gene29937.t1	MTR_5g006520	43.590	156	85	1	4	156	1735	1890	4.26e-40	143
MS.gene29937.t1	MTR_5g006470	43.506	154	86	1	4	156	17	170	6.74e-40	133
MS.gene29937.t1	MTR_5g006510	42.038	157	85	3	4	156	19	173	4.84e-37	126
MS.gene29937.t1	MTR_5g006460	42.500	160	83	5	4	156	18	175	4.71e-36	123

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29937.t1	AT3G22560	57.616	151	62	1	8	156	7	157	3.98e-59	181
MS.gene29937.t1	AT2G32030	48.000	150	74	2	8	156	24	170	8.84e-51	160
MS.gene29937.t1	AT2G32020	47.134	157	79	2	1	156	12	165	7.66e-50	158

Find 0 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATGATTTTTCTGATTTGTTA+AGG	+	51740:12715-12734	MS.gene29937:CDS	20.0%
	AGACATCTTTGATGAAAGTT+AGG	-	51740:12512-12531	MS.gene29937:intergenic	30.0%
	GACATCTTTGATGAAAGTTA+GGG	-	51740:12511-12530	MS.gene29937:intergenic	30.0%
!	TTTTACTTACGTGGATAACA+AGG	+	51740:12746-12765	MS.gene29937:CDS	30.0%
!!!	AGCAATTTTGATTGCTTTTG+TGG	-	51740:12679-12698	MS.gene29937:intergenic	30.0%
!!!	TTCTCAAAGAGTTTTGGAAA+AGG	+	51740:12770-12789	MS.gene29937:CDS	30.0%
	AAGTAACCAAAAACATCCGA+TGG	+	51740:12460-12479	MS.gene29937:CDS	35.0%
	ACGTTGACGATTTCATGTTA+TGG	+	51740:12424-12443	MS.gene29937:CDS	35.0%
	ATACACAGAAACAAAACCGA+TGG	-	51740:12580-12599	MS.gene29937:intergenic	35.0%
	ATGGAAAACTTGCAATTCGA+GGG	+	51740:12479-12498	MS.gene29937:CDS	35.0%
	CGTTGACGATTTCATGTTAT+GGG	+	51740:12425-12444	MS.gene29937:CDS	35.0%
!	AGTTTTCCATCGGATGTTTT+TGG	-	51740:12469-12488	MS.gene29937:intergenic	35.0%
!	ATCTATCTAGGATATCTCTG+AGG	+	51740:12385-12404	MS.gene29937:CDS	35.0%
!	ATGCTGTTGCTTCTAACTAT+TGG	+	51740:12640-12659	MS.gene29937:CDS	35.0%
!	TCGAATTGCAAGTTTTCCAT+CGG	-	51740:12479-12498	MS.gene29937:intergenic	35.0%
!	TGCTGTTGCTTCTAACTATT+GGG	+	51740:12641-12660	MS.gene29937:CDS	35.0%
!!	TTCTGATTTGTTAAGGTTGC+AGG	+	51740:12722-12741	MS.gene29937:CDS	35.0%
!!!	AAAGAGTTTTGGAAAAGGCT+GGG	+	51740:12775-12794	MS.gene29937:CDS	35.0%
!!!	GTTTTGTTTCTGTGTATCCT+TGG	+	51740:12583-12602	MS.gene29937:CDS	35.0%
	ACGATTTCATGTTATGGGCA+GGG	+	51740:12430-12449	MS.gene29937:CDS	40.0%
	CAGAAACAAAACCGATGGAA+CGG	-	51740:12575-12594	MS.gene29937:intergenic	40.0%
	CTTCTAACTATTGGGGTCAA+GGG	+	51740:12649-12668	MS.gene29937:CDS	40.0%
	GATGGAAAACTTGCAATTCG+AGG	+	51740:12478-12497	MS.gene29937:CDS	40.0%
!	CAAGGCTTCTCAAAGAGTTT+TGG	+	51740:12764-12783	MS.gene29937:CDS	40.0%
!	GCTGTTGCTTCTAACTATTG+GGG	+	51740:12642-12661	MS.gene29937:CDS	40.0%
!	TCAACGTCTGTTAGCTTGAA+TGG	-	51740:12411-12430	MS.gene29937:intergenic	40.0%
!	TTCTAAGAACACCCTCTCTA+AGG	-	51740:12803-12822	MS.gene29937:intergenic	40.0%
!!!	CAAAGAGTTTTGGAAAAGGC+TGG	+	51740:12774-12793	MS.gene29937:CDS	40.0%
	ATCCTTGGTCAGGTGATGAT+AGG	+	51740:12598-12617	MS.gene29937:CDS	45.0%
	CGATTTCATGTTATGGGCAG+GGG	+	51740:12431-12450	MS.gene29937:CDS	45.0%
	GACGATTTCATGTTATGGGC+AGG	+	51740:12429-12448	MS.gene29937:CDS	45.0%
	GATAGGTGCAAAGCTGACAT+AGG	+	51740:12615-12634	MS.gene29937:CDS	45.0%
	GCTTCTAACTATTGGGGTCA+AGG	+	51740:12648-12667	MS.gene29937:CDS	45.0%
	GTTTCTGTGTATCCTTGGTC+AGG	+	51740:12588-12607	MS.gene29937:CDS	45.0%
	TGGCAAAGGTGGATCTATCT+AGG	+	51740:12373-12392	MS.gene29937:CDS	45.0%
!	GTTGCAGGCTTTTACTTACG+TGG	+	51740:12737-12756	MS.gene29937:CDS	45.0%
	AAAGGCTGGGTTCCTTAGAG+AGG	+	51740:12788-12807	MS.gene29937:CDS	50.0%
	AAGGCTGGGTTCCTTAGAGA+GGG	+	51740:12789-12808	MS.gene29937:CDS	50.0%
	AGACAGATCGAATGACGCCA+AGG	-	51740:12546-12565	MS.gene29937:intergenic	50.0%
	ATGTCTGCATACCTCACCCT+TGG	+	51740:12526-12545	MS.gene29937:CDS	50.0%
	CACCTATCATCACCTGACCA+AGG	-	51740:12603-12622	MS.gene29937:intergenic	50.0%
	GACAGATCGAATGACGCCAA+GGG	-	51740:12545-12564	MS.gene29937:intergenic	50.0%
	ATCGAATGACGCCAAGGGTG+AGG	-	51740:12540-12559	MS.gene29937:intergenic	55.0%
	TGTCTCGACGACCGTTCCAT+CGG	+	51740:12561-12580	MS.gene29937:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
51740	gene	12372	12840	12372	ID=MS.gene29937
51740	mRNA	12372	12840	12372	ID=MS.gene29937.t1;Parent=MS.gene29937
51740	exon	12372	12840	12372	ID=MS.gene29937.t1.exon1;Parent=MS.gene29937.t1
51740	CDS	12372	12840	12372	ID=cds.MS.gene29937.t1;Parent=MS.gene29937.t1

Gene Sequence

>MS.gene29937

ATGGCAAAGGTGGATCTATCTAGGATATCTCTGAGGCCATTCAAGCTAACAGACGTTGACGATTTCATGTTATGGGCAGGGGACGATGAAGTAACCAAAAACATCCGATGGAAAACTTGCAATTCGAGGGAAGAAGCCCTAACTTTCATCAAAGATGTCTGCATACCTCACCCTTGGCGTCATTCGATCTGTCTCGACGACCGTTCCATCGGTTTTGTTTCTGTGTATCCTTGGTCAGGTGATGATAGGTGCAAAGCTGACATAGGTTATGCTGTTGCTTCTAACTATTGGGGTCAAGGGATAGCCACAAAAGCAATCAAAATTGCTCTGTCTCAAGTGTTTAATGATTTTTCTGATTTGTTAAGGTTGCAGGCTTTTACTTACGTGGATAACAAGGCTTCTCAAAGAGTTTTGGAAAAGGCTGGGTTCCTTAGAGAGGGTGTTCTTAGAAAGTATACTTATATCAAAG

Protein sequence

>MS.gene29937.t1

MAKVDLSRISLRPFKLTDVDDFMLWAGDDEVTKNIRWKTCNSREEALTFIKDVCIPHPWRHSICLDDRSIGFVSVYPWSGDDRCKADIGYAVASNYWGQGIATKAIKIALSQVFNDFSDLLRLQAFTYVDNKASQRVLEKAGFLREGVLRKYTYIK