Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067742.t1 | APC23631.1 | 100 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 2.80E-63 | 251.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067742.t1 | Q642A5 | 40.4 | 104 | 54 | 3 | 1 | 101 | 1 | 99 | 1.5e-12 | 73.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067742.t1 | A0A1J0F5C9 | 100.0 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 2.0e-63 | 251.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067742.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067742.t1 | MTR_4g052950 | 93.571 | 140 | 3 | 1 | 1 | 134 | 1 | 140 | 7.44e-89 | 254 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067742.t1 | AT2G27470 | 69.231 | 91 | 28 | 0 | 4 | 94 | 8 | 98 | 2.56e-41 | 138 |
MS.gene067742.t1 | AT3G53340 | 33.051 | 118 | 69 | 4 | 7 | 124 | 34 | 141 | 4.51e-11 | 57.8 |
MS.gene067742.t1 | AT3G53340 | 33.051 | 118 | 69 | 4 | 7 | 124 | 34 | 141 | 4.51e-11 | 57.8 |
Find 35 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCATCTCCCTTTCCTTT+TGG | 0.216918 | 4.2:-49282392 | None:intergenic |
CACACGGCGTACGATAGTTT+TGG | 0.288672 | 4.2:-49280947 | None:intergenic |
GATGAAGATTCTGGCACTTT+CGG | 0.351884 | 4.2:-49281043 | None:intergenic |
AAGGTAGTGGATGAAGATTC+TGG | 0.398524 | 4.2:-49281052 | None:intergenic |
GAAGGCGAGCCGTCTGATAA+AGG | 0.409116 | 4.2:+49282434 | MS.gene067742:CDS |
CAGAGTTTACTGAGTTTGTT+GGG | 0.413182 | 4.2:+49281633 | MS.gene067742:CDS |
CCTCTAAAAGATTCTCTTGA+AGG | 0.437256 | 4.2:+49281656 | MS.gene067742:CDS |
ACAGAGTTTACTGAGTTTGT+TGG | 0.451694 | 4.2:+49281632 | MS.gene067742:CDS |
AGCGGCAGTGCCAAAAGGAA+AGG | 0.481373 | 4.2:+49282382 | MS.gene067742:CDS |
GCAGGGCTAATGATATATGT+AGG | 0.482928 | 4.2:+49281555 | MS.gene067742:intron |
AACGGCAATGTCGCCGTCGT+CGG | 0.485500 | 4.2:-49280995 | None:intergenic |
ATCGACAATGGCTGAGGCGG+AGG | 0.486553 | 4.2:+49280918 | None:intergenic |
TATCGTACGCCGTGTGGTGA+AGG | 0.496035 | 4.2:+49280954 | MS.gene067742:CDS |
CTTACGTAGCGGAAAGGTAG+TGG | 0.497193 | 4.2:-49281065 | None:intergenic |
GTCGCCGTCGTCGGAGCAAG+TGG | 0.510785 | 4.2:-49280986 | None:intergenic |
GAGAAAATCGACAATGGCTG+AGG | 0.540596 | 4.2:+49280912 | None:intergenic |
TGAGAAGGGAAAGAAAAGAA+AGG | 0.540607 | 4.2:+49282409 | MS.gene067742:CDS |
AAAAGGAAAGGGAGATGAGA+AGG | 0.549945 | 4.2:+49282394 | MS.gene067742:CDS |
CAGGGCTAATGATATATGTA+GGG | 0.556080 | 4.2:+49281556 | MS.gene067742:intron |
AAGAAAGCGGCAGTGCCAAA+AGG | 0.559929 | 4.2:+49282377 | MS.gene067742:CDS |
GCGGCAGTGCCAAAAGGAAA+GGG | 0.560436 | 4.2:+49282383 | MS.gene067742:CDS |
AAAATCGACAATGGCTGAGG+CGG | 0.566675 | 4.2:+49280915 | None:intergenic |
CTTTCCACTTGCTCCGACGA+CGG | 0.580800 | 4.2:+49280982 | MS.gene067742:CDS |
AAAGGAAAGGGAGATGAGAA+GGG | 0.589156 | 4.2:+49282395 | MS.gene067742:CDS |
CAAAACTATCGTACGCCGTG+TGG | 0.603664 | 4.2:+49280948 | MS.gene067742:CDS |
GGAAAGAAAAGAAAGGCGGA+AGG | 0.603937 | 4.2:+49282416 | MS.gene067742:CDS |
GAAGGGAAAGAAAAGAAAGG+CGG | 0.609576 | 4.2:+49282412 | MS.gene067742:CDS |
AAGAAGAGCGTCTTTGTGAA+CGG | 0.610289 | 4.2:-49281013 | None:intergenic |
GAGCCGTCTGATAAAGGTGA+TGG | 0.613636 | 4.2:+49282440 | MS.gene067742:CDS |
CAAGCACTTACGTAGCGGAA+AGG | 0.621390 | 4.2:-49281071 | None:intergenic |
CCACCATCACCTTTATCAGA+CGG | 0.625820 | 4.2:-49282443 | None:intergenic |
AAAGAATGCTGGGAAGAAAG+CGG | 0.668115 | 4.2:+49282364 | MS.gene067742:CDS |
CCGTCTGATAAAGGTGATGG+TGG | 0.675418 | 4.2:+49282443 | MS.gene067742:CDS |
ATATATGTAGGGAGTCAAAG+AGG | 0.682246 | 4.2:+49281567 | MS.gene067742:CDS |
AAAGCTTCTCCTTCACCACA+CGG | 0.706469 | 4.2:-49280963 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAGAGGATAAAAATTA+GGG | + | chr4.2:49281363-49281382 | MS.gene067742:intron | 15.0% |
!! | ACATCAAATTTATCAAATTA+GGG | - | chr4.2:49281143-49281162 | None:intergenic | 15.0% |
!! | TAATAAAGAGGATAAAAATT+AGG | + | chr4.2:49281362-49281381 | MS.gene067742:intron | 15.0% |
!!! | AAAATTTTACAATGGTTTTT+GGG | + | chr4.2:49281303-49281322 | MS.gene067742:intron | 15.0% |
!!! | GAAAATTATGGTTTATATTT+TGG | + | chr4.2:49281269-49281288 | MS.gene067742:intron | 15.0% |
!! | AAATTGAAACTTTGATTGTA+AGG | + | chr4.2:49281238-49281257 | MS.gene067742:intron | 20.0% |
!! | GACATCAAATTTATCAAATT+AGG | - | chr4.2:49281144-49281163 | None:intergenic | 20.0% |
!!! | AATTATGGTTTATATTTTGG+AGG | + | chr4.2:49281272-49281291 | MS.gene067742:intron | 20.0% |
!!! | GAAAATTTTACAATGGTTTT+TGG | + | chr4.2:49281302-49281321 | MS.gene067742:intron | 20.0% |
!!! | TATTTTTCTTTTCATTGCAA+TGG | + | chr4.2:49281824-49281843 | MS.gene067742:intron | 20.0% |
! | AATTATTTGTGCGCAAATTA+GGG | - | chr4.2:49281111-49281130 | None:intergenic | 25.0% |
! | TAATTATTTGTGCGCAAATT+AGG | - | chr4.2:49281112-49281131 | None:intergenic | 25.0% |
! | TCATGGGTGATTTAAAAAAT+GGG | + | chr4.2:49281332-49281351 | MS.gene067742:intron | 25.0% |
! | TTCATGGGTGATTTAAAAAA+TGG | + | chr4.2:49281331-49281350 | MS.gene067742:intron | 25.0% |
!! | AATTGGGGAAATTTTGTAAT+GGG | + | chr4.2:49281185-49281204 | MS.gene067742:intron | 25.0% |
!! | ATAAAAATGGGAACTTTTTG+AGG | + | chr4.2:49281493-49281512 | MS.gene067742:intron | 25.0% |
!! | CAATTGGGAAAATTTTACAA+TGG | + | chr4.2:49281295-49281314 | MS.gene067742:intron | 25.0% |
!! | TAATTGGGGAAATTTTGTAA+TGG | + | chr4.2:49281184-49281203 | MS.gene067742:intron | 25.0% |
!!! | CATTTTAGAGTTACAATTCA+TGG | - | chr4.2:49281963-49281982 | None:intergenic | 25.0% |
!!! | TTTATATTTTGGAGGCAATT+GGG | + | chr4.2:49281280-49281299 | MS.gene067742:intron | 25.0% |
AAAAATTAGGGTTCGTAGTT+TGG | + | chr4.2:49281375-49281394 | MS.gene067742:intron | 30.0% | |
AAATTAGGGTTTCAGATAGA+AGG | - | chr4.2:49281097-49281116 | None:intergenic | 30.0% | |
AAGAGGAATGAAACTATTTG+TGG | + | chr4.2:49282158-49282177 | MS.gene067742:intron | 30.0% | |
AAGGAAGGAGATGAAAATTA+TGG | + | chr4.2:49281257-49281276 | MS.gene067742:intron | 30.0% | |
AATCCCCATTTAGTTGAAAA+TGG | + | chr4.2:49281894-49281913 | MS.gene067742:intron | 30.0% | |
AGAGGAATGAAACTATTTGT+GGG | + | chr4.2:49282159-49282178 | MS.gene067742:intron | 30.0% | |
AGTTTAGGAAAAAGAATGCT+GGG | + | chr4.2:49282354-49282373 | MS.gene067742:CDS | 30.0% | |
ATCCCCATTTAGTTGAAAAT+GGG | + | chr4.2:49281895-49281914 | MS.gene067742:intron | 30.0% | |
ATGGGAACTTTGTAATAAAG+AGG | + | chr4.2:49281350-49281369 | MS.gene067742:intron | 30.0% | |
TCCTGGGTGATTATAAAAAT+GGG | + | chr4.2:49281481-49281500 | MS.gene067742:intron | 30.0% | |
TGAAACTTTGATTGTAAGGA+AGG | + | chr4.2:49281242-49281261 | MS.gene067742:intron | 30.0% | |
TGCAATGGAAGTTCAAAAAA+AGG | + | chr4.2:49281839-49281858 | MS.gene067742:intron | 30.0% | |
TTATGCTACATAAACAAGTG+TGG | + | chr4.2:49282097-49282116 | MS.gene067742:intron | 30.0% | |
TTCCTGGGTGATTATAAAAA+TGG | + | chr4.2:49281480-49281499 | MS.gene067742:intron | 30.0% | |
! | AACCCATTTTCAACTAAATG+GGG | - | chr4.2:49281900-49281919 | None:intergenic | 30.0% |
! | AATGGGGAAAATTTTGCATT+GGG | + | chr4.2:49281402-49281421 | MS.gene067742:intron | 30.0% |
! | CAACCCATTTTCAACTAAAT+GGG | - | chr4.2:49281901-49281920 | None:intergenic | 30.0% |
! | GAAAATTTTGCATTGGGTTT+TGG | + | chr4.2:49281408-49281427 | MS.gene067742:intron | 30.0% |
! | GCATAGAATAACTCAGTTTT+AGG | - | chr4.2:49282003-49282022 | None:intergenic | 30.0% |
! | TCTTTTTCCTAAACTCTGAT+AGG | - | chr4.2:49282349-49282368 | None:intergenic | 30.0% |
! | TGTCATTTGAGCAATCATTA+TGG | + | chr4.2:49281801-49281820 | MS.gene067742:intron | 30.0% |
! | TTTTTGACCTATCAGAGTTT+AGG | + | chr4.2:49282339-49282358 | MS.gene067742:intron | 30.0% |
!! | GTCAAAAAGAAAAAGTGTCA+AGG | - | chr4.2:49282327-49282346 | None:intergenic | 30.0% |
!! | GTTTATATTTTGGAGGCAAT+TGG | + | chr4.2:49281279-49281298 | MS.gene067742:intron | 30.0% |
!! | TTGTGTTGTTTGTATTTGCA+GGG | + | chr4.2:49281538-49281557 | MS.gene067742:intron | 30.0% |
!! | TTTGTGTTGTTTGTATTTGC+AGG | + | chr4.2:49281537-49281556 | MS.gene067742:intron | 30.0% |
!!! | CAGTTTTAGGCTTTTAACAA+TGG | - | chr4.2:49281990-49282009 | None:intergenic | 30.0% |
!!! | GGAAATTTTGTAATGGGTTT+TGG | + | chr4.2:49281191-49281210 | MS.gene067742:intron | 30.0% |
!!! | TGTTATGACTGCTTTGTTTT+CGG | + | chr4.2:49281696-49281715 | MS.gene067742:intron | 30.0% |
AAACAAAGCAGTCATAACAC+AGG | - | chr4.2:49281695-49281714 | None:intergenic | 35.0% | |
AACAAAGCAGTCATAACACA+GGG | - | chr4.2:49281694-49281713 | None:intergenic | 35.0% | |
AACTGAGTTATTCTATGCTC+TGG | + | chr4.2:49282005-49282024 | MS.gene067742:intron | 35.0% | |
ACAGAGTTTACTGAGTTTGT+TGG | + | chr4.2:49281632-49281651 | MS.gene067742:CDS | 35.0% | |
ATATATGTAGGGAGTCAAAG+AGG | + | chr4.2:49281567-49281586 | MS.gene067742:CDS | 35.0% | |
ATGGAAGATATGATCTTGCT+TGG | + | chr4.2:49282058-49282077 | MS.gene067742:intron | 35.0% | |
CAGGGCTAATGATATATGTA+GGG | + | chr4.2:49281556-49281575 | MS.gene067742:intron | 35.0% | |
CCATTTAGTTGAAAATGGGT+TGG | + | chr4.2:49281899-49281918 | MS.gene067742:intron | 35.0% | |
GAGTTTAGGAAAAAGAATGC+TGG | + | chr4.2:49282353-49282372 | MS.gene067742:intron | 35.0% | |
GCTAGTGAGTAATATTTGGT+TGG | + | chr4.2:49282123-49282142 | MS.gene067742:intron | 35.0% | |
GTCAGCTAGTGAGTAATATT+TGG | + | chr4.2:49282119-49282138 | MS.gene067742:intron | 35.0% | |
TGAGAAGGGAAAGAAAAGAA+AGG | + | chr4.2:49282409-49282428 | MS.gene067742:CDS | 35.0% | |
! | CAATGGGGAAAATTTTGCAT+TGG | + | chr4.2:49281401-49281420 | MS.gene067742:intron | 35.0% |
! | CAGAGTTTACTGAGTTTGTT+GGG | + | chr4.2:49281633-49281652 | MS.gene067742:CDS | 35.0% |
! | CCAACCCATTTTCAACTAAA+TGG | - | chr4.2:49281902-49281921 | None:intergenic | 35.0% |
! | CCTCTAAAAGATTCTCTTGA+AGG | + | chr4.2:49281656-49281675 | MS.gene067742:CDS | 35.0% |
! | CCTTCAAGAGAATCTTTTAG+AGG | - | chr4.2:49281659-49281678 | None:intergenic | 35.0% |
!! | AGAGTGAAGTGAAAGTATCA+TGG | + | chr4.2:49281770-49281789 | MS.gene067742:intron | 35.0% |
!! | ATTCCCTTTTTGGAGGTAAT+TGG | + | chr4.2:49281168-49281187 | MS.gene067742:intron | 35.0% |
!! | GATGTCTGAAATTCCCTTTT+TGG | + | chr4.2:49281158-49281177 | MS.gene067742:intron | 35.0% |
!! | TCCCATTTTTATAATCACCC+AGG | - | chr4.2:49281485-49281504 | None:intergenic | 35.0% |
!! | TGGCTATTTTGGAGGAAATT+GGG | + | chr4.2:49281428-49281447 | MS.gene067742:intron | 35.0% |
!! | TTCCCTTTTTGGAGGTAATT+GGG | + | chr4.2:49281169-49281188 | MS.gene067742:intron | 35.0% |
!! | TTGGCTATTTTGGAGGAAAT+TGG | + | chr4.2:49281427-49281446 | MS.gene067742:intron | 35.0% |
!!! | AAATTGGGGAAGTTTTGTTG+TGG | + | chr4.2:49281443-49281462 | MS.gene067742:intron | 35.0% |
!!! | AATTGGGGAAGTTTTGTTGT+GGG | + | chr4.2:49281444-49281463 | MS.gene067742:intron | 35.0% |
!!! | GGTTTTTGGGATTGATTCAT+GGG | + | chr4.2:49281316-49281335 | MS.gene067742:intron | 35.0% |
!!! | TGGTTTTTGGGATTGATTCA+TGG | + | chr4.2:49281315-49281334 | MS.gene067742:intron | 35.0% |
AAAAGGAAAGGGAGATGAGA+AGG | + | chr4.2:49282394-49282413 | MS.gene067742:CDS | 40.0% | |
AAAGAATGCTGGGAAGAAAG+CGG | + | chr4.2:49282364-49282383 | MS.gene067742:CDS | 40.0% | |
AAAGGAAAGGGAGATGAGAA+GGG | + | chr4.2:49282395-49282414 | MS.gene067742:CDS | 40.0% | |
AATTAGGGTTCGTAGTTTGG+AGG | + | chr4.2:49281378-49281397 | MS.gene067742:intron | 40.0% | |
GAAGGGAAAGAAAAGAAAGG+CGG | + | chr4.2:49282412-49282431 | MS.gene067742:CDS | 40.0% | |
GATGAAGATTCTGGCACTTT+CGG | - | chr4.2:49281046-49281065 | None:intergenic | 40.0% | |
GCAGGGCTAATGATATATGT+AGG | + | chr4.2:49281555-49281574 | MS.gene067742:intron | 40.0% | |
TCCCCAATTACCTCCAAAAA+GGG | - | chr4.2:49281174-49281193 | None:intergenic | 40.0% | |
TCTTCCATCATGCTTAGAGT+TGG | - | chr4.2:49282046-49282065 | None:intergenic | 40.0% | |
TGAACCAACTCTAAGCATGA+TGG | + | chr4.2:49282039-49282058 | MS.gene067742:intron | 40.0% | |
TTCCCCAATTACCTCCAAAA+AGG | - | chr4.2:49281175-49281194 | None:intergenic | 40.0% | |
! | GTTGGTTCATAGCTACAAAG+AGG | + | chr4.2:49282141-49282160 | MS.gene067742:intron | 40.0% |
! | TTCTCATCTCCCTTTCCTTT+TGG | - | chr4.2:49282395-49282414 | None:intergenic | 40.0% |
!! | AAGAAGAGCGTCTTTGTGAA+CGG | - | chr4.2:49281016-49281035 | None:intergenic | 40.0% |
!! | AAGGTAGTGGATGAAGATTC+TGG | - | chr4.2:49281055-49281074 | None:intergenic | 40.0% |
!! | GGCTATTTTGGAGGAAATTG+GGG | + | chr4.2:49281429-49281448 | MS.gene067742:intron | 40.0% |
!! | GTCTGAAATTCCCTTTTTGG+AGG | + | chr4.2:49281161-49281180 | MS.gene067742:intron | 40.0% |
!! | TCCCTTTTTGGAGGTAATTG+GGG | + | chr4.2:49281170-49281189 | MS.gene067742:intron | 40.0% |
!!! | GCATTGGGTTTTGGCTATTT+TGG | + | chr4.2:49281417-49281436 | MS.gene067742:intron | 40.0% |
!!! | GGAAGTTTTGTTGTGGGTTT+TGG | + | chr4.2:49281450-49281469 | MS.gene067742:intron | 40.0% |
!!! | GGTTTTGGAGATTGATTCCT+GGG | + | chr4.2:49281465-49281484 | MS.gene067742:intron | 40.0% |
!!! | TTGGGTTTTGGCTATTTTGG+AGG | + | chr4.2:49281420-49281439 | MS.gene067742:intron | 40.0% |
AAAGCTTCTCCTTCACCACA+CGG | - | chr4.2:49280966-49280985 | None:intergenic | 45.0% | |
CCACCATCACCTTTATCAGA+CGG | - | chr4.2:49282446-49282465 | None:intergenic | 45.0% | |
GACCAATATCTGCCCTAACT+TGG | + | chr4.2:49282297-49282316 | MS.gene067742:intron | 45.0% | |
GGAAAGAAAAGAAAGGCGGA+AGG | + | chr4.2:49282416-49282435 | MS.gene067742:CDS | 45.0% | |
GTTCGTAGTTTGGAGGCAAT+GGG | + | chr4.2:49281385-49281404 | MS.gene067742:intron | 45.0% | |
TGCCAAGTTAGGGCAGATAT+TGG | - | chr4.2:49282302-49282321 | None:intergenic | 45.0% | |
TGTCAAGGTCTGCCAAGTTA+GGG | - | chr4.2:49282312-49282331 | None:intergenic | 45.0% | |
TTCGTAGTTTGGAGGCAATG+GGG | + | chr4.2:49281386-49281405 | MS.gene067742:intron | 45.0% | |
! | ACACGGCGTACGATAGTTTT+GGG | - | chr4.2:49280949-49280968 | None:intergenic | 45.0% |
!!! | GGGTTTTGGAGATTGATTCC+TGG | + | chr4.2:49281464-49281483 | MS.gene067742:intron | 45.0% |
AAGAAAGCGGCAGTGCCAAA+AGG | + | chr4.2:49282377-49282396 | MS.gene067742:CDS | 50.0% | |
CAAAACTATCGTACGCCGTG+TGG | + | chr4.2:49280948-49280967 | MS.gene067742:CDS | 50.0% | |
GAAGGCAAGCACTTACGTAG+CGG | - | chr4.2:49281079-49281098 | None:intergenic | 50.0% | |
GAGCCGTCTGATAAAGGTGA+TGG | + | chr4.2:49282440-49282459 | MS.gene067742:CDS | 50.0% | |
GGTTCGTAGTTTGGAGGCAA+TGG | + | chr4.2:49281384-49281403 | MS.gene067742:intron | 50.0% | |
GTGTCAAGGTCTGCCAAGTT+AGG | - | chr4.2:49282313-49282332 | None:intergenic | 50.0% | |
! | CAAGCACTTACGTAGCGGAA+AGG | - | chr4.2:49281074-49281093 | None:intergenic | 50.0% |
! | CACACGGCGTACGATAGTTT+TGG | - | chr4.2:49280950-49280969 | None:intergenic | 50.0% |
! | CCGTCTGATAAAGGTGATGG+TGG | + | chr4.2:49282443-49282462 | MS.gene067742:CDS | 50.0% |
! | CTTACGTAGCGGAAAGGTAG+TGG | - | chr4.2:49281068-49281087 | None:intergenic | 50.0% |
AGCGGCAGTGCCAAAAGGAA+AGG | + | chr4.2:49282382-49282401 | MS.gene067742:CDS | 55.0% | |
CTTTCCACTTGCTCCGACGA+CGG | + | chr4.2:49280982-49281001 | MS.gene067742:CDS | 55.0% | |
GAAGGCGAGCCGTCTGATAA+AGG | + | chr4.2:49282434-49282453 | MS.gene067742:CDS | 55.0% | |
GCGGCAGTGCCAAAAGGAAA+GGG | + | chr4.2:49282383-49282402 | MS.gene067742:CDS | 55.0% | |
TATCGTACGCCGTGTGGTGA+AGG | + | chr4.2:49280954-49280973 | MS.gene067742:CDS | 55.0% | |
AACGGCAATGTCGCCGTCGT+CGG | - | chr4.2:49280998-49281017 | None:intergenic | 60.0% | |
GTCGCCGTCGTCGGAGCAAG+TGG | - | chr4.2:49280989-49281008 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 49280925 | 49282481 | 49280925 | ID=MS.gene067742 |
chr4.2 | mRNA | 49280925 | 49282481 | 49280925 | ID=MS.gene067742.t1;Parent=MS.gene067742 |
chr4.2 | exon | 49280925 | 49281082 | 49280925 | ID=MS.gene067742.t1.exon1;Parent=MS.gene067742.t1 |
chr4.2 | CDS | 49280925 | 49281082 | 49280925 | ID=cds.MS.gene067742.t1;Parent=MS.gene067742.t1 |
chr4.2 | exon | 49281559 | 49281677 | 49281559 | ID=MS.gene067742.t1.exon2;Parent=MS.gene067742.t1 |
chr4.2 | CDS | 49281559 | 49281677 | 49281559 | ID=cds.MS.gene067742.t1;Parent=MS.gene067742.t1 |
chr4.2 | exon | 49282354 | 49282481 | 49282354 | ID=MS.gene067742.t1.exon3;Parent=MS.gene067742.t1 |
chr4.2 | CDS | 49282354 | 49282481 | 49282354 | ID=cds.MS.gene067742.t1;Parent=MS.gene067742.t1 |
Gene Sequence |
Protein sequence |