AlfalfaGEDB | MS.gene66752

M. sativa cultivar XinJiangDaYe / MS.gene66752

KEGG: K02326
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046982 GO:0046983
PFAM: PF00808.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66752.t1	APC23631.1	100	134	0	0	1	134	1	134	2.80E-63	251.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66752.t1	Q642A5	40.4	104	54	3	1	101	1	99	1.5e-12	73.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66752.t1	A0A1J0F5C9	100.0	134	0	0	1	134	1	134	2.0e-63	251.1

TFs/TRs:

Gene ID	Type	Classification
MS.gene66752.t1	TF	NF-YB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene66752	MS.gene056335	PPI
MS.gene66752	MS.gene23886	PPI
MS.gene028868	MS.gene66752	PPI
MS.gene66752	MS.gene78224	PPI
MS.gene030666	MS.gene66752	PPI
MS.gene000365	MS.gene66752	PPI
MS.gene043455	MS.gene66752	PPI
MS.gene049111	MS.gene66752	PPI
MS.gene027904	MS.gene66752	PPI
MS.gene00233	MS.gene66752	PPI
MS.gene70263	MS.gene66752	PPI
MS.gene66752	MS.gene28438	PPI
MS.gene66752	MS.gene26084	PPI
MS.gene66752	MS.gene055778	PPI
MS.gene41343	MS.gene66752	PPI
MS.gene66051	MS.gene66752	PPI
MS.gene66752	MS.gene04748	PPI
MS.gene65125	MS.gene66752	PPI
MS.gene29445	MS.gene66752	PPI
MS.gene26406	MS.gene66752	PPI
MS.gene89203	MS.gene66752	PPI
MS.gene068179	MS.gene66752	PPI
MS.gene015760	MS.gene66752	PPI
MS.gene58114	MS.gene66752	PPI
MS.gene024064	MS.gene66752	PPI
MS.gene66752	MS.gene70990	PPI
MS.gene53708	MS.gene66752	PPI
MS.gene58285	MS.gene66752	PPI
MS.gene66752	MS.gene027909	PPI
MS.gene66752	MS.gene70261	PPI
MS.gene038612	MS.gene66752	PPI
MS.gene027907	MS.gene66752	PPI
MS.gene66752	MS.gene030664	PPI
MS.gene58116	MS.gene66752	PPI
MS.gene030661	MS.gene66752	PPI
MS.gene28432	MS.gene66752	PPI
MS.gene66752	MS.gene05905	PPI
MS.gene66752	MS.gene64164	PPI
MS.gene97703	MS.gene66752	PPI
MS.gene66752	MS.gene43369	PPI
MS.gene91631	MS.gene66752	PPI
MS.gene021887	MS.gene66752	PPI
MS.gene009155	MS.gene66752	PPI
MS.gene78924	MS.gene66752	PPI
MS.gene52605	MS.gene66752	PPI
MS.gene66752	MS.gene58112	PPI
MS.gene39538	MS.gene66752	PPI
MS.gene78922	MS.gene66752	PPI
MS.gene033505	MS.gene66752	PPI
MS.gene071851	MS.gene66752	PPI
MS.gene47573	MS.gene66752	PPI
MS.gene28434	MS.gene66752	PPI
MS.gene97701	MS.gene66752	PPI
MS.gene057458	MS.gene66752	PPI
MS.gene31434	MS.gene66752	PPI
MS.gene059054	MS.gene66752	PPI
MS.gene66752	MS.gene017431	PPI
MS.gene66752	MS.gene78227	PPI
MS.gene66752	MS.gene70258	PPI
MS.gene068178	MS.gene66752	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66752.t1	MTR_4g052950	93.571	140	3	1	1	134	1	140	7.44e-89	254

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66752.t1	AT2G27470	69.231	91	28	0	4	94	8	98	2.56e-41	138
MS.gene66752.t1	AT3G53340	33.051	118	69	4	7	124	34	141	4.51e-11	57.8
MS.gene66752.t1	AT3G53340	33.051	118	69	4	7	124	34	141	4.51e-11	57.8

Find 34 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTCATCTCCCTTTCCTTT+TGG	0.216918	4.3:-46949756	None:intergenic
CACACGGCGTACAATAGTTT+TGG	0.248078	4.3:-46948200	None:intergenic
GATGAAGATTCTGGCACTTT+CGG	0.351884	4.3:-46948296	None:intergenic
AAGGTAGTGGATGAAGATTC+TGG	0.398524	4.3:-46948305	None:intergenic
CAGAGTTTACTGAGTTTGTT+GGG	0.413182	4.3:+46948980	MS.gene66752:CDS
CCTCTAAAAGATTCTCTTGA+AGG	0.437256	4.3:+46949003	MS.gene66752:CDS
ACAGAGTTTACTGAGTTTGT+TGG	0.451694	4.3:+46948979	MS.gene66752:CDS
AGCGGCAGTGCCAAAAGGAA+AGG	0.481373	4.3:+46949746	MS.gene66752:CDS
ATCGATAATGGCTGAGGCGG+AGG	0.482624	4.3:+46948171	None:intergenic
GCAGGGCTAATGATATATGT+AGG	0.482928	4.3:+46948902	MS.gene66752:intron
CTTACGTAGCAGAAAGGTAG+TGG	0.498108	4.3:-46948318	None:intergenic
GTCGCCGTCGTCGGAGCAAG+TGG	0.510785	4.3:-46948239	None:intergenic
TATTGTACGCCGTGTGGTGA+AGG	0.540443	4.3:+46948207	MS.gene66752:CDS
TGAGAAGGGAAAGAAAAGAA+AGG	0.540607	4.3:+46949773	MS.gene66752:CDS
AACAGCAATGTCGCCGTCGT+CGG	0.545821	4.3:-46948248	None:intergenic
CCGTCTGACAAAGGCGATGG+TGG	0.546278	4.3:+46949807	MS.gene66752:CDS
AAAAGGAAAGGGAGATGAGA+AGG	0.549945	4.3:+46949758	MS.gene66752:CDS
CAGGGCTAATGATATATGTA+GGG	0.556080	4.3:+46948903	MS.gene66752:intron
AAGAAAGCGGCAGTGCCAAA+AGG	0.559929	4.3:+46949741	MS.gene66752:CDS
GCGGCAGTGCCAAAAGGAAA+GGG	0.560436	4.3:+46949747	MS.gene66752:CDS
CCACCATCGCCTTTGTCAGA+CGG	0.579482	4.3:-46949807	None:intergenic
CTTTCCACTTGCTCCGACGA+CGG	0.580800	4.3:+46948235	MS.gene66752:CDS
GAGAAAATCGATAATGGCTG+AGG	0.587694	4.3:+46948165	None:intergenic
AAAGGAAAGGGAGATGAGAA+GGG	0.589156	4.3:+46949759	MS.gene66752:CDS
AAAGCACTTACGTAGCAGAA+AGG	0.591048	4.3:-46948324	None:intergenic
AAAATCGATAATGGCTGAGG+CGG	0.597463	4.3:+46948168	None:intergenic
GAAGGCGAGCCGTCTGACAA+AGG	0.603385	4.3:+46949798	MS.gene66752:CDS
GGAAAGAAAAGAAAGGCGGA+AGG	0.603937	4.3:+46949780	MS.gene66752:CDS
GAGCCGTCTGACAAAGGCGA+TGG	0.609316	4.3:+46949804	MS.gene66752:CDS
GAAGGGAAAGAAAAGAAAGG+CGG	0.609576	4.3:+46949776	MS.gene66752:CDS
CAAAACTATTGTACGCCGTG+TGG	0.666023	4.3:+46948201	MS.gene66752:CDS
AAAGAATGCTGGGAAGAAAG+CGG	0.668115	4.3:+46949728	MS.gene66752:CDS
ATATATGTAGGGAGTCAAAG+AGG	0.691304	4.3:+46948914	MS.gene66752:CDS
AAAGCTTCTCCTTCACCACA+CGG	0.706469	4.3:-46948216	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACAAAATTAAACTAACAAA+AGG	-	chr4.3:46949096-46949115	None:intergenic	15.0%
!!!	AAAAATTAGGGTTTATATTT+TGG	+	chr4.3:46948765-46948784	MS.gene66752:intron	15.0%
!!!	AATTGAGGAAATTTTTTAAT+GGG	+	chr4.3:46948461-46948480	MS.gene66752:intron	15.0%
!!!	TAATTGAGGAAATTTTTTAA+TGG	+	chr4.3:46948460-46948479	MS.gene66752:intron	15.0%
!!	AAGAAAGGAGATAAAAATTA+GGG	+	chr4.3:46948753-46948772	MS.gene66752:intron	20.0%
!!	ACATCAAATTTATCAACTTA+GGG	-	chr4.3:46948397-46948416	None:intergenic	20.0%
!!	ATTTATTTATGCGCAAATTA+GGG	-	chr4.3:46948365-46948384	None:intergenic	20.0%
!!	TAAGAAAGGAGATAAAAATT+AGG	+	chr4.3:46948752-46948771	MS.gene66752:intron	20.0%
!!	TATTTATTTATGCGCAAATT+AGG	-	chr4.3:46948366-46948385	None:intergenic	20.0%
!!!	AATTGGTGAAATTTTGTTAT+GGG	+	chr4.3:46948679-46948698	MS.gene66752:intron	20.0%
!!!	GATTCTAAAAATTGAAACTT+TGG	+	chr4.3:46948506-46948525	MS.gene66752:intron	20.0%
!!!	TGTCATTTATATATCTGTTA+TGG	+	chr4.3:46949172-46949191	MS.gene66752:intron	20.0%
!!!	TTTATATTTTGGAGGAAATT+GGG	+	chr4.3:46948776-46948795	MS.gene66752:intron	20.0%
!!!	TTTGTATTTTGGAGAAAATT+GGG	+	chr4.3:46948554-46948573	MS.gene66752:intron	20.0%
!!!	TTTTTTAGCTATTGATTCTT+GGG	+	chr4.3:46948702-46948721	MS.gene66752:intron	20.0%
!	AATCCCCATTTAGTTAAAAA+GGG	+	chr4.3:46949264-46949283	MS.gene66752:intron	25.0%
!	GACATCAAATTTATCAACTT+AGG	-	chr4.3:46948398-46948417	None:intergenic	25.0%
!	TAAAGTCATATCAAAGGTAA+GGG	-	chr4.3:46949036-46949055	None:intergenic	25.0%
!	TAATCCCCATTTAGTTAAAA+AGG	+	chr4.3:46949263-46949282	MS.gene66752:intron	25.0%
!	TTGGATAGAAGTTCAAAAAA+TGG	+	chr4.3:46949209-46949228	MS.gene66752:intron	25.0%
!	TTGTGGGTGATTATAAAAAT+GGG	+	chr4.3:46948828-46948847	MS.gene66752:intron	25.0%
!	TTTGTGGGTGATTATAAAAA+TGG	+	chr4.3:46948827-46948846	MS.gene66752:intron	25.0%
!!	AGTATTTTGCAATGGTTATT+AGG	+	chr4.3:46948577-46948596	MS.gene66752:intron	25.0%
!!	CAATTGGTGAAATTTTGTTA+TGG	+	chr4.3:46948678-46948697	MS.gene66752:intron	25.0%
!!	TATCATTGTTGGTGAAAATT+AGG	+	chr4.3:46949292-46949311	MS.gene66752:intron	25.0%
!!	TATGGTTTTCTTCTTTTCAT+TGG	+	chr4.3:46949190-46949209	MS.gene66752:intron	25.0%
!!	TTAGATTTTGGATGTAATTG+AGG	+	chr4.3:46948446-46948465	MS.gene66752:intron	25.0%
!!!	AAATTGAAACTTTGGTCTTA+AGG	+	chr4.3:46948514-46948533	MS.gene66752:intron	25.0%
!!!	AAGTAGGGTTTATATTTTTG+TGG	+	chr4.3:46948655-46948674	MS.gene66752:intron	25.0%
!!!	AATTAGGGTTTATATTTTGG+AGG	+	chr4.3:46948768-46948787	MS.gene66752:intron	25.0%
!!!	GGAAATTTTTTAATGGGTTT+TGG	+	chr4.3:46948467-46948486	MS.gene66752:intron	25.0%
!!!	GTTAGTTTAATTTTGTTAGC+TGG	+	chr4.3:46949099-46949118	MS.gene66752:intron	25.0%
!!!	GTTTATATTTTGGAGGAAAT+TGG	+	chr4.3:46948775-46948794	MS.gene66752:intron	25.0%
!!!	GTTTATATTTTTGTGGCAAT+TGG	+	chr4.3:46948662-46948681	MS.gene66752:intron	25.0%
!!!	GTTTGTATTTTGGAGAAAAT+TGG	+	chr4.3:46948553-46948572	MS.gene66752:intron	25.0%
!!!	GTTTTTTAGCTATTGATTCT+TGG	+	chr4.3:46948701-46948720	MS.gene66752:intron	25.0%
!!!	TAAAAATGGGAACTTTTTTG+AGG	+	chr4.3:46948841-46948860	MS.gene66752:intron	25.0%
!!!	TCTTGGGTGATTTTAAAAAT+GGG	+	chr4.3:46948718-46948737	MS.gene66752:intron	25.0%
!!!	TTAAAAATGGGTACTTTTTG+AGG	+	chr4.3:46948621-46948640	MS.gene66752:intron	25.0%
!!!	TTATATTTTGGAGGAAATTG+GGG	+	chr4.3:46948777-46948796	MS.gene66752:intron	25.0%
!!!	TTCTTGGGTGATTTTAAAAA+TGG	+	chr4.3:46948717-46948736	MS.gene66752:intron	25.0%
	AAACCCCACTTAAAGAAAAA+GGG	-	chr4.3:46948428-46948447	None:intergenic	30.0%
	AAGACATATGTGTAGTTGTT+TGG	+	chr4.3:46949634-46949653	MS.gene66752:intron	30.0%
	AAGAGGAATGAAACTATTTG+TGG	+	chr4.3:46949522-46949541	MS.gene66752:intron	30.0%
	ACTCAGTAAAGTCATATCAA+AGG	-	chr4.3:46949042-46949061	None:intergenic	30.0%
	AGAGGAATGAAACTATTTGT+GGG	+	chr4.3:46949523-46949542	MS.gene66752:intron	30.0%
	AGTTTAGGAAAAAGAATGCT+GGG	+	chr4.3:46949718-46949737	MS.gene66752:CDS	30.0%
	GTAAAGTCATATCAAAGGTA+AGG	-	chr4.3:46949037-46949056	None:intergenic	30.0%
	TAAACCCCACTTAAAGAAAA+AGG	-	chr4.3:46948429-46948448	None:intergenic	30.0%
	TTATGCTACATAAACAAGTG+TGG	+	chr4.3:46949466-46949485	MS.gene66752:intron	30.0%
!	AAATCCCCTTTTTCTTTAAG+TGG	+	chr4.3:46948420-46948439	MS.gene66752:intron	30.0%
!	AAATTGGGGAATTTTGCAAT+GGG	+	chr4.3:46948791-46948810	MS.gene66752:intron	30.0%
!	AATCCCCTTTTTCTTTAAGT+GGG	+	chr4.3:46948421-46948440	MS.gene66752:intron	30.0%
!	GAAAATTGGGGTTTGTATTT+TGG	+	chr4.3:46948543-46948562	MS.gene66752:intron	30.0%
!	GGTTATTAGGATTGATTCAT+GGG	+	chr4.3:46948590-46948609	MS.gene66752:intron	30.0%
!	TCTTTTTCCTAAACTCTGAT+AGG	-	chr4.3:46949713-46949732	None:intergenic	30.0%
!	TGGTTATTAGGATTGATTCA+TGG	+	chr4.3:46948589-46948608	MS.gene66752:intron	30.0%
!	TTTAAGTGGGGTTTAGATTT+TGG	+	chr4.3:46948434-46948453	MS.gene66752:intron	30.0%
!	TTTTTGACCTATCAGAGTTT+AGG	+	chr4.3:46949703-46949722	MS.gene66752:intron	30.0%
!!	ACCAACCCTTTTTAACTAAA+TGG	-	chr4.3:46949272-46949291	None:intergenic	30.0%
!!	ATGGGTGGTGATTTTAAAAA+TGG	+	chr4.3:46948608-46948627	MS.gene66752:intron	30.0%
!!	CAACCCTTTTTAACTAAATG+GGG	-	chr4.3:46949270-46949289	None:intergenic	30.0%
!!	CACTTTTAGGCTTTTAACTA+TGG	-	chr4.3:46949359-46949378	None:intergenic	30.0%
!!	CCAACCCTTTTTAACTAAAT+GGG	-	chr4.3:46949271-46949290	None:intergenic	30.0%
!!	GCATAGAATAACTCACTTTT+AGG	-	chr4.3:46949372-46949391	None:intergenic	30.0%
!!	GTCAAAAAGAAAAAGTGTCA+AGG	-	chr4.3:46949691-46949710	None:intergenic	30.0%
!!	TGGGTGGTGATTTTAAAAAT+GGG	+	chr4.3:46948609-46948628	MS.gene66752:intron	30.0%
!!!	AAATTGGGAGTATTTTGCAA+TGG	+	chr4.3:46948569-46948588	MS.gene66752:intron	30.0%
!!!	CATTTTAGAGTCATAGTTCA+TGG	-	chr4.3:46949332-46949351	None:intergenic	30.0%
!!!	TGTTTTAAGACTTAGCATCA+TGG	+	chr4.3:46949142-46949161	MS.gene66752:intron	30.0%
	AACCCCACTTAAAGAAAAAG+GGG	-	chr4.3:46948427-46948446	None:intergenic	35.0%
	ACAGAGTTTACTGAGTTTGT+TGG	+	chr4.3:46948979-46948998	MS.gene66752:CDS	35.0%
	ATATATGTAGGGAGTCAAAG+AGG	+	chr4.3:46948914-46948933	MS.gene66752:CDS	35.0%
	ATGGAAGATATGATCTTGCT+TGG	+	chr4.3:46949427-46949446	MS.gene66752:intron	35.0%
	CAAATTAGGGTTTAGAGAGA+AGG	-	chr4.3:46948352-46948371	None:intergenic	35.0%
	CAGGGCTAATGATATATGTA+GGG	+	chr4.3:46948903-46948922	MS.gene66752:intron	35.0%
	CCCATTTAGTTAAAAAGGGT+TGG	+	chr4.3:46949268-46949287	MS.gene66752:intron	35.0%
	CTTAAGGAAGGAGGAAAATT+GGG	+	chr4.3:46948530-46948549	MS.gene66752:intron	35.0%
	GAGGAAGGAGATAAAAAGTA+GGG	+	chr4.3:46948640-46948659	MS.gene66752:intron	35.0%
	GAGTTTAGGAAAAAGAATGC+TGG	+	chr4.3:46949717-46949736	MS.gene66752:intron	35.0%
	GCTAGTGAGTAATATTTGGT+TGG	+	chr4.3:46949492-46949511	MS.gene66752:intron	35.0%
	GTCAGCTAGTGAGTAATATT+TGG	+	chr4.3:46949488-46949507	MS.gene66752:intron	35.0%
	TCTTAAGGAAGGAGGAAAAT+TGG	+	chr4.3:46948529-46948548	MS.gene66752:intron	35.0%
	TGAGAAGGGAAAGAAAAGAA+AGG	+	chr4.3:46949773-46949792	MS.gene66752:CDS	35.0%
	TGAGGAAGGAGATAAAAAGT+AGG	+	chr4.3:46948639-46948658	MS.gene66752:intron	35.0%
	TTAAGGAAGGAGGAAAATTG+GGG	+	chr4.3:46948531-46948550	MS.gene66752:intron	35.0%
!	ATCCCCTTTTTCTTTAAGTG+GGG	+	chr4.3:46948422-46948441	MS.gene66752:intron	35.0%
!	CAGAGTTTACTGAGTTTGTT+GGG	+	chr4.3:46948980-46948999	MS.gene66752:CDS	35.0%
!	CATTGTTGGTGAAAATTAGG+AGG	+	chr4.3:46949295-46949314	MS.gene66752:intron	35.0%
!	CCTCTAAAAGATTCTCTTGA+AGG	+	chr4.3:46949003-46949022	MS.gene66752:CDS	35.0%
!	CCTTCAAGAGAATCTTTTAG+AGG	-	chr4.3:46949006-46949025	None:intergenic	35.0%
!	GAAATTGGGGAATTTTGCAA+TGG	+	chr4.3:46948790-46948809	MS.gene66752:intron	35.0%
!	GGGAACTTTGTTTGTAAGAA+AGG	+	chr4.3:46948738-46948757	MS.gene66752:intron	35.0%
!	TATTAGGATTGATTCATGGG+TGG	+	chr4.3:46948593-46948612	MS.gene66752:intron	35.0%
!!	AAAGGGTTGGTTATCATTGT+TGG	+	chr4.3:46949281-46949300	MS.gene66752:intron	35.0%
!!	AAATGGGTACTTTTTGAGGA+AGG	+	chr4.3:46948625-46948644	MS.gene66752:intron	35.0%
!!	GGTTTGGACTATTGATTTGT+GGG	+	chr4.3:46948812-46948831	MS.gene66752:intron	35.0%
!!	GGTTTTGGTGATTGATTCAT+GGG	+	chr4.3:46948482-46948501	MS.gene66752:intron	35.0%
!!	TGAAACTTTGGTCTTAAGGA+AGG	+	chr4.3:46948518-46948537	MS.gene66752:intron	35.0%
!!	TGGTGTTGTTTGTATTTGCA+GGG	+	chr4.3:46948885-46948904	MS.gene66752:intron	35.0%
!!	TTGGTGTTGTTTGTATTTGC+AGG	+	chr4.3:46948884-46948903	MS.gene66752:intron	35.0%
	AAAAGGAAAGGGAGATGAGA+AGG	+	chr4.3:46949758-46949777	MS.gene66752:CDS	40.0%
	AAAGAATGCTGGGAAGAAAG+CGG	+	chr4.3:46949728-46949747	MS.gene66752:CDS	40.0%
	AAAGGAAAGGGAGATGAGAA+GGG	+	chr4.3:46949759-46949778	MS.gene66752:CDS	40.0%
	AGAAGAAGCTGAAGAGTGAT+TGG	+	chr4.3:46948865-46948884	MS.gene66752:intron	40.0%
	GAAGGGAAAGAAAAGAAAGG+CGG	+	chr4.3:46949776-46949795	MS.gene66752:CDS	40.0%
	GATGAAGATTCTGGCACTTT+CGG	-	chr4.3:46948299-46948318	None:intergenic	40.0%
	GCAGGGCTAATGATATATGT+AGG	+	chr4.3:46948902-46948921	MS.gene66752:intron	40.0%
	TCTTCCATCATGCTTAGAGT+TGG	-	chr4.3:46949415-46949434	None:intergenic	40.0%
	TGAACCAACTCTAAGCATGA+TGG	+	chr4.3:46949408-46949427	MS.gene66752:intron	40.0%
!	AAAGCACTTACGTAGCAGAA+AGG	-	chr4.3:46948327-46948346	None:intergenic	40.0%
!	ACACGGCGTACAATAGTTTT+GGG	-	chr4.3:46948202-46948221	None:intergenic	40.0%
!	TTCTCATCTCCCTTTCCTTT+TGG	-	chr4.3:46949759-46949778	None:intergenic	40.0%
!!	AACTTTGGTCTTAAGGAAGG+AGG	+	chr4.3:46948521-46948540	MS.gene66752:intron	40.0%
!!	AAGGTAGTGGATGAAGATTC+TGG	-	chr4.3:46948308-46948327	None:intergenic	40.0%
!!	ATTTGGTTGGTGCTACAAAG+AGG	+	chr4.3:46949505-46949524	MS.gene66752:intron	40.0%
!!	GGGTTTGGACTATTGATTTG+TGG	+	chr4.3:46948811-46948830	MS.gene66752:intron	40.0%
!!	GGGTTTTGGTGATTGATTCA+TGG	+	chr4.3:46948481-46948500	MS.gene66752:intron	40.0%
	AAAGCTTCTCCTTCACCACA+CGG	-	chr4.3:46948219-46948238	None:intergenic	45.0%
	CAAAACTATTGTACGCCGTG+TGG	+	chr4.3:46948201-46948220	MS.gene66752:CDS	45.0%
	CAATATCTGCCCTAACTTGG+CGG	+	chr4.3:46949664-46949683	MS.gene66752:intron	45.0%
	CTTACGTAGCAGAAAGGTAG+TGG	-	chr4.3:46948321-46948340	None:intergenic	45.0%
	GACCAATATCTGCCCTAACT+TGG	+	chr4.3:46949661-46949680	MS.gene66752:intron	45.0%
	GGAAAGAAAAGAAAGGCGGA+AGG	+	chr4.3:46949780-46949799	MS.gene66752:CDS	45.0%
	TGGAGAGTGAAGTGAAGCTT+TGG	+	chr4.3:46949119-46949138	MS.gene66752:intron	45.0%
!	CACACGGCGTACAATAGTTT+TGG	-	chr4.3:46948203-46948222	None:intergenic	45.0%
!!	GGGGAATTTTGCAATGGGTT+TGG	+	chr4.3:46948796-46948815	MS.gene66752:intron	45.0%
!!	AAATTGTAAAATTTATAATT+AGG	+	chr4.3:46949238-46949257	MS.gene66752:intron	5.0%
	AAGAAAGCGGCAGTGCCAAA+AGG	+	chr4.3:46949741-46949760	MS.gene66752:CDS	50.0%
	CGCCAAGTTAGGGCAGATAT+TGG	-	chr4.3:46949666-46949685	None:intergenic	50.0%
	TATTGTACGCCGTGTGGTGA+AGG	+	chr4.3:46948207-46948226	MS.gene66752:CDS	50.0%
	TGTCAAGGTCCGCCAAGTTA+GGG	-	chr4.3:46949676-46949695	None:intergenic	50.0%
	AACAGCAATGTCGCCGTCGT+CGG	-	chr4.3:46948251-46948270	None:intergenic	55.0%
	AGCGGCAGTGCCAAAAGGAA+AGG	+	chr4.3:46949746-46949765	MS.gene66752:CDS	55.0%
	CCACCATCGCCTTTGTCAGA+CGG	-	chr4.3:46949810-46949829	None:intergenic	55.0%
	CTTTCCACTTGCTCCGACGA+CGG	+	chr4.3:46948235-46948254	MS.gene66752:CDS	55.0%
	GCGGCAGTGCCAAAAGGAAA+GGG	+	chr4.3:46949747-46949766	MS.gene66752:CDS	55.0%
	GTGTCAAGGTCCGCCAAGTT+AGG	-	chr4.3:46949677-46949696	None:intergenic	55.0%
	CCGTCTGACAAAGGCGATGG+TGG	+	chr4.3:46949807-46949826	MS.gene66752:CDS	60.0%
	GAAGGCGAGCCGTCTGACAA+AGG	+	chr4.3:46949798-46949817	MS.gene66752:CDS	60.0%
	GAGCCGTCTGACAAAGGCGA+TGG	+	chr4.3:46949804-46949823	MS.gene66752:CDS	60.0%
	GTCGCCGTCGTCGGAGCAAG+TGG	-	chr4.3:46948242-46948261	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	46948178	46949845	46948178	ID=MS.gene66752
chr4.3	mRNA	46948178	46949845	46948178	ID=MS.gene66752.t1;Parent=MS.gene66752
chr4.3	exon	46948178	46948335	46948178	ID=MS.gene66752.t1.exon1;Parent=MS.gene66752.t1
chr4.3	CDS	46948178	46948335	46948178	ID=cds.MS.gene66752.t1;Parent=MS.gene66752.t1
chr4.3	exon	46948906	46949024	46948906	ID=MS.gene66752.t1.exon2;Parent=MS.gene66752.t1
chr4.3	CDS	46948906	46949024	46948906	ID=cds.MS.gene66752.t1;Parent=MS.gene66752.t1
chr4.3	exon	46949718	46949845	46949718	ID=MS.gene66752.t1.exon3;Parent=MS.gene66752.t1
chr4.3	CDS	46949718	46949845	46949718	ID=cds.MS.gene66752.t1;Parent=MS.gene66752.t1

Gene Sequence

>MS.gene66752

ATGGCTGAGGCGGAGGAGCTTCCCAAAACTATTGTACGCCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCTGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATCCACTACCTTTCTGCTACGTAAGTGCTTTTACCTTCTCTCTAAACCCTAATTTGCGCATAAATAAATATAAAAAAACCCTAAGTTGATAAATTTGATGTCTGAAATCCCCTTTTTCTTTAAGTGGGGTTTAGATTTTGGATGTAATTGAGGAAATTTTTTAATGGGTTTTGGTGATTGATTCATGGGTGATTCTAAAAATTGAAACTTTGGTCTTAAGGAAGGAGGAAAATTGGGGTTTGTATTTTGGAGAAAATTGGGAGTATTTTGCAATGGTTATTAGGATTGATTCATGGGTGGTGATTTTAAAAATGGGTACTTTTTGAGGAAGGAGATAAAAAGTAGGGTTTATATTTTTGTGGCAATTGGTGAAATTTTGTTATGGGTTTTTTAGCTATTGATTCTTGGGTGATTTTAAAAATGGGAACTTTGTTTGTAAGAAAGGAGATAAAAATTAGGGTTTATATTTTGGAGGAAATTGGGGAATTTTGCAATGGGTTTGGACTATTGATTTGTGGGTGATTATAAAAATGGGAACTTTTTTGAGGTAGAAGAAGCTGAAGAGTGATTGGTGTTGTTTGTATTTGCAGGGCTAATGATATATGTAGGGAGTCAAAGAGGCAGATTATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACAGAGTTTACTGAGTTTGTTGGGCCTCTAAAAGATTCTCTTGAAGGTCACTTTCCCTTACCTTTGATATGACTTTACTGAGTTTTTTTTCAGACTAGCTGTGATTTATTTTTACCTTTTGTTAGTTTAATTTTGTTAGCTGGAGAGTGAAGTGAAGCTTTGGTGTTTTAAGACTTAGCATCATGGCAAATGTTGTCATTTATATATCTGTTATGGTTTTCTTCTTTTCATTGGATAGAAGTTCAAAAAATGGTTTACAAAATTGTAAAATTTATAATTAGGAGTAATCCCCATTTAGTTAAAAAGGGTTGGTTATCATTGTTGGTGAAAATTAGGAGGAAGAGAAATGTCCATGAACTATGACTCTAAAATGTCTTCCATAGTTAAAAGCCTAAAAGTGAGTTATTCTATGCTCTGTTGTGTACATTGTGAACCAACTCTAAGCATGATGGAAGATATGATCTTGCTTGGTGTTCACAGTTCACTGTTATGCTACATAAACAAGTGTGGTCAGCTAGTGAGTAATATTTGGTTGGTGCTACAAAGAGGAATGAAACTATTTGTGGGAGTATGTTTTTTGAATTACACATGAAACTACTTTGTAATAATTTGCATGAAATTTTTATTCATTTTATGATTTCATTCAGATTAAGAAAAGACATATGTGTAGTTGTTTGGATTTGACCAATATCTGCCCTAACTTGGCGGACCTTGACACTTTTTCTTTTTGACCTATCAGAGTTTAGGAAAAAGAATGCTGGGAAGAAAGCGGCAGTGCCAAAAGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGGCGGAAGGCGAGCCGTCTGACAAAGGCGATGGTGGTGATGATGACCAATGA

Protein sequence

>MS.gene66752.t1

MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVGPLKDSLEEFRKKNAGKKAAVPKGKGDEKGKKRKAEGEPSDKGDGGDDDQ