AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028994

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028994.t1 MTR_2g089765 92.389 473 36 0 1 473 16 488 0.0 915
MS.gene028994.t1 MTR_2g089670 72.689 476 113 6 1 473 22 483 0.0 664
MS.gene028994.t1 MTR_8g012750 69.087 482 130 11 1 471 3 476 0.0 624
MS.gene028994.t1 MTR_2g089665 60.360 444 64 6 1 442 2 335 2.08e-173 491
MS.gene028994.t1 MTR_7g015860 42.946 482 234 12 1 467 5 460 3.20e-119 357
MS.gene028994.t1 MTR_3g028210 36.326 479 277 10 1 470 8 467 4.03e-98 303
MS.gene028994.t1 MTR_2g089650 36.307 482 271 13 1 470 9 466 1.08e-88 279
MS.gene028994.t1 MTR_7g014330 37.975 474 258 12 2 463 3 452 2.01e-88 278
MS.gene028994.t1 MTR_6g015850 35.908 479 270 13 2 470 9 460 5.16e-84 266
MS.gene028994.t1 MTR_2g089755 36.226 461 261 12 24 470 37 478 2.12e-83 265
MS.gene028994.t1 MTR_6g015815 35.744 484 267 14 2 470 9 463 8.43e-82 261
MS.gene028994.t1 MTR_7g014230 36.383 470 271 10 2 463 5 454 9.47e-82 260
MS.gene028994.t1 MTR_7g014250 35.532 470 275 10 2 463 3 452 1.75e-80 257
MS.gene028994.t1 MTR_2g089735 35.371 458 258 13 28 470 30 464 8.26e-79 253
MS.gene028994.t1 MTR_3g087640 35.318 487 272 15 2 468 10 473 3.73e-78 251
MS.gene028994.t1 MTR_6g015830 35.124 484 272 13 1 470 8 463 5.89e-77 248
MS.gene028994.t1 MTR_7g014200 34.774 486 276 15 1 469 9 470 1.21e-76 248
MS.gene028994.t1 MTR_6g015320 32.700 474 283 11 6 470 11 457 1.96e-71 233
MS.gene028994.t1 MTR_7g014160 34.016 488 278 15 1 467 9 473 2.01e-71 234
MS.gene028994.t1 MTR_6g015315 33.259 448 272 8 28 470 30 455 2.92e-69 228
MS.gene028994.t1 MTR_7g014610 33.733 501 272 17 1 472 8 477 3.86e-69 228
MS.gene028994.t1 MTR_7g013850 31.712 473 271 13 25 467 30 480 1.92e-62 211
MS.gene028994.t1 MTR_7g014620 33.477 463 252 12 20 467 11 432 2.08e-58 199
MS.gene028994.t1 MTR_7g014360 30.075 399 238 9 69 463 21 382 3.53e-46 165
MS.gene028994.t1 MTR_3g435300 36.170 282 156 8 2 273 4 271 6.08e-44 155
MS.gene028994.t1 MTR_2g089745 89.157 83 9 0 391 473 1 83 5.40e-42 144
MS.gene028994.t1 MTR_7g014630 34.737 285 157 10 1 270 9 279 8.43e-33 128
MS.gene028994.t1 MTR_7g014310 29.942 344 172 10 108 449 29 305 1.52e-31 123
MS.gene028994.t1 MTR_7g014670 37.037 189 110 2 280 467 79 259 1.40e-30 119
MS.gene028994.t1 MTR_6g015310 27.506 389 208 10 66 445 10 333 2.56e-30 120
MS.gene028994.t1 MTR_7g014180 38.764 178 95 5 1 174 7 174 2.87e-26 105
MS.gene028994.t1 MTR_8g041770 26.585 410 238 12 24 419 30 390 6.85e-20 92.4
MS.gene028994.t1 MTR_4g094835 24.689 482 278 17 1 452 4 430 1.43e-18 88.2
MS.gene028994.t1 MTR_3g098980 24.331 411 254 11 59 459 65 428 3.54e-18 87.0
MS.gene028994.t1 MTR_7g026860 24.619 394 243 13 38 419 38 389 8.82e-18 85.9
MS.gene028994.t1 MTR_4g022825 25.542 415 235 16 30 419 26 391 7.88e-17 82.8
MS.gene028994.t1 MTR_7g014210 39.130 115 68 2 325 437 24 138 1.34e-16 77.8
MS.gene028994.t1 MTR_8g096530 24.834 451 267 18 35 471 37 429 1.55e-16 82.0
MS.gene028994.t1 MTR_4g022720 24.331 411 248 13 24 419 24 386 5.39e-16 80.5
MS.gene028994.t1 MTR_3g088420 24.402 418 257 12 13 419 15 384 8.61e-16 79.7
MS.gene028994.t1 MTR_4g022670 23.632 402 268 12 24 419 24 392 1.23e-15 79.3
MS.gene028994.t1 MTR_0190s0020 25.532 423 256 13 45 452 48 426 1.70e-15 79.0
MS.gene028994.t1 MTR_4g022800 23.866 419 259 15 18 419 18 393 2.17e-15 78.6
MS.gene028994.t1 MTR_3g070170 21.915 470 294 16 22 459 31 459 2.92e-15 78.2
MS.gene028994.t1 MTR_7g014340 58.824 68 27 1 2 68 3 70 4.14e-15 71.2
MS.gene028994.t1 MTR_4g127650 23.909 481 278 15 22 467 29 456 4.36e-15 77.8
MS.gene028994.t1 MTR_2g064495 21.918 438 285 14 40 465 39 431 2.82e-14 75.1
MS.gene028994.t1 MTR_7g014220 58.730 63 26 0 16 78 10 72 3.36e-14 68.2
MS.gene028994.t1 MTR_4g094828 21.343 417 268 13 20 419 25 398 4.49e-14 74.3
MS.gene028994.t1 MTR_3g026310 23.529 425 267 14 13 419 15 399 4.54e-14 74.3
MS.gene028994.t1 MTR_7g014205 37.719 114 59 2 323 435 18 120 8.40e-14 68.2
MS.gene028994.t1 MTR_8g075610 24.306 432 267 17 40 459 30 413 1.25e-13 72.8
MS.gene028994.t1 MTR_3g435290 33.884 121 77 2 348 468 1 118 2.13e-13 67.0
MS.gene028994.t1 MTR_3g049150 26.384 307 166 11 140 419 126 399 2.45e-11 65.9
MS.gene028994.t1 MTR_3g101960 22.245 490 288 20 1 456 6 436 2.84e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028994.t1 AT1G03940 38.958 480 265 12 2 472 9 469 4.78e-104 318
MS.gene028994.t1 AT1G03495 39.888 356 182 12 3 349 10 342 6.47e-70 226
MS.gene028994.t1 AT3G29670 32.365 482 276 15 1 467 3 449 4.94e-66 219
MS.gene028994.t1 AT5G61160 31.733 479 288 14 1 469 3 452 2.13e-63 213
MS.gene028994.t1 AT3G29635 30.453 486 291 12 1 470 3 457 2.73e-60 204
MS.gene028994.t1 AT3G29590 32.427 478 277 16 1 468 8 449 1.99e-57 196
MS.gene028994.t1 AT3G29680 30.252 476 294 10 1 468 3 448 9.27e-57 195
MS.gene028994.t1 AT5G39090 30.105 475 292 13 1 467 5 447 7.54e-55 190
MS.gene028994.t1 AT5G39050 29.939 491 291 14 1 469 10 469 6.91e-53 185
MS.gene028994.t1 AT5G39080 27.572 486 304 14 1 467 5 461 6.28e-49 174
MS.gene028994.t1 AT3G48720 22.936 436 271 12 37 459 41 424 4.86e-18 86.7
MS.gene028994.t1 AT3G29690 31.481 162 99 4 312 469 27 180 1.84e-16 77.8
MS.gene028994.t1 AT5G41040 23.598 428 267 14 54 470 63 441 7.92e-16 80.1
MS.gene028994.t1 AT5G41040 23.598 428 267 14 54 470 79 457 1.15e-15 79.7
MS.gene028994.t1 AT1G65450 24.776 335 207 13 144 467 149 449 5.74e-13 71.2
MS.gene028994.t1 AT5G01210 22.674 344 216 10 144 461 141 460 7.44e-12 67.8

Find 106 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTGTTCTTCCAAATTC+TGG 0.075389 2.3:+11295256 MS.gene028994:CDS
TTCATCATTTCATGAAATTC+TGG 0.154366 2.3:+11295329 MS.gene028994:CDS
GGAGGGGTGTTAAGGGAATT+TGG 0.209569 2.3:-11295052 None:intergenic
CAAATAGACAACCCAGAATT+TGG 0.217457 2.3:-11295268 None:intergenic
AAACATTGATGTCTGATTAT+AGG 0.245779 2.3:+11295953 MS.gene028994:CDS
GGTTGCTGGTTCACCGAAAT+TGG 0.246480 2.3:+11296008 MS.gene028994:CDS
TTGAAAGATGTTAATGAAAT+TGG 0.248470 2.3:-11296178 None:intergenic
GTACGAGGTGGAGGTAAATT+TGG 0.264562 2.3:-11295190 None:intergenic
GCTGTTTATGAAACTGATTT+TGG 0.276498 2.3:+11296030 MS.gene028994:CDS
CATCCCTATAATGGCTATTC+AGG 0.277699 2.3:+11295234 MS.gene028994:CDS
TAACCCATTTCTTCAACTTC+TGG 0.280416 2.3:-11295588 None:intergenic
AACATTGATGTCTGATTATA+GGG 0.290004 2.3:+11295954 MS.gene028994:CDS
GTTGGTGATGGAACTGAATT+TGG 0.302858 2.3:-11294845 None:intergenic
TTTAAGAGTGATGCTTTGTT+AGG 0.320839 2.3:+11295925 MS.gene028994:CDS
CTTTAACTCTATCTCTTTCA+TGG 0.321227 2.3:-11295429 None:intergenic
GTGACCTGAATAGCCATTAT+AGG 0.322860 2.3:-11295238 None:intergenic
TCACTGTTCTTCCAAATTCT+GGG 0.346380 2.3:+11295257 MS.gene028994:CDS
TGACATGGAATTCGCGGGTT+TGG 0.347437 2.3:+11295507 MS.gene028994:CDS
GTATATAAGGAGGGGTGTTA+AGG 0.354241 2.3:-11295060 None:intergenic
ACTATGTTCTATCACCTTCA+TGG 0.354613 2.3:-11294807 None:intergenic
TTGTAACAAGCTCCTTGATT+TGG 0.359633 2.3:+11295659 MS.gene028994:CDS
TAGAAGAAGATACGTTTAAC+AGG 0.362847 2.3:-11294914 None:intergenic
TGAACTGCATCAGATTTCTT+AGG 0.374068 2.3:-11296063 None:intergenic
AAGTCCAGAAGTTGAAGAAA+TGG 0.376086 2.3:+11295584 MS.gene028994:CDS
GTTTCATAAACAGCCAATTT+CGG 0.380067 2.3:-11296021 None:intergenic
TCATCATTTCATGAAATTCT+GGG 0.381535 2.3:+11295330 MS.gene028994:CDS
CATTCGTGTCATCCCTATAA+TGG 0.385956 2.3:+11295225 MS.gene028994:CDS
AAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.3:-11295002 None:intergenic
GGAAAGTGAATGTTTAAGAA+TGG 0.394305 2.3:-11294981 None:intergenic
ATTATTGTTGTTTGTTGCTA+TGG 0.405288 2.3:-11295368 None:intergenic
ATTCACAAGATGCTCAAAAC+TGG 0.405633 2.3:+11295155 MS.gene028994:CDS
AAGTCGGTTACTGTGGTTGC+TGG 0.409781 2.3:+11295994 MS.gene028994:CDS
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.3:-11295035 None:intergenic
TGACCTGAATAGCCATTATA+GGG 0.424676 2.3:-11295237 None:intergenic
GATGATGAGGTTGGAGGTGA+AGG 0.429029 2.3:-11295026 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2.3:-11295073 None:intergenic
TATATAAGGAGGGGTGTTAA+GGG 0.438164 2.3:-11295059 None:intergenic
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.3:+11296108 MS.gene028994:CDS
AGATAGAGTTAAAGATCTAA+AGG 0.440490 2.3:+11295438 MS.gene028994:CDS
TGGTATGTCGAAGAAAGTTA+AGG 0.445120 2.3:-11294876 None:intergenic
TGGTGGAATTGAAGTTGGTT+TGG 0.445540 2.3:+11296134 MS.gene028994:CDS
GTAAAGAGAGATGAGTTAAT+CGG 0.450299 2.3:+11295850 MS.gene028994:CDS
GAAAGTGAATGTTTAAGAAT+GGG 0.454014 2.3:-11294980 None:intergenic
GCAGTTCATCTTGATTCATC+CGG 0.454263 2.3:+11296078 MS.gene028994:CDS
GGTGGTGGTGGAATTGAAGT+TGG 0.467228 2.3:+11296129 MS.gene028994:CDS
GAATGGGAAGTGTTGTTTGA+AGG 0.475295 2.3:-11294964 None:intergenic
GGGATTGTTGTGGCTTCAAT+TGG 0.477890 2.3:+11295880 MS.gene028994:CDS
GATAGAGTTAAAGATCTAAA+GGG 0.478327 2.3:+11295439 MS.gene028994:CDS
GGGAATTTGGAGGGATGATG+AGG 0.481946 2.3:-11295039 None:intergenic
GGTATGTCGAAGAAAGTTAA+GGG 0.489263 2.3:-11294875 None:intergenic
GGTGATGGAACTGAATTTGG+TGG 0.489909 2.3:-11294842 None:intergenic
AGTCCAGAAGTTGAAGAAAT+GGG 0.492194 2.3:+11295585 MS.gene028994:CDS
GTTTGAAGGAAGTGATGAGT+TGG 0.500560 2.3:-11294950 None:intergenic
TGAAGGGAAAGAAGTGTTGG+AGG 0.501627 2.3:-11295009 None:intergenic
TTTAACTCTATCTCTTTCAT+GGG 0.506937 2.3:-11295428 None:intergenic
AAGGGGAGAATGGTTGGTGA+TGG 0.521926 2.3:-11294857 None:intergenic
AGGTGAAGGGAAAGAAGTGT+TGG 0.523394 2.3:-11295012 None:intergenic
AAGTTGGTTTGGCTCTTGAG+AGG 0.523983 2.3:+11296145 MS.gene028994:CDS
CTTTCTGATTGTAGAGATGG+TGG 0.524087 2.3:+11296111 MS.gene028994:CDS
ATCAGAAAGAGAAATCGAAC+CGG 0.526033 2.3:-11296097 None:intergenic
GATCATACAAAACCAAATCA+AGG 0.527811 2.3:-11295671 None:intergenic
ATCAAATGACATGGAATTCG+CGG 0.527943 2.3:+11295501 MS.gene028994:CDS
GATTGTAGAGATGGTGGTGG+TGG 0.534276 2.3:+11296117 MS.gene028994:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.545689 2.3:-11295032 None:intergenic
ACTCTATCTCTTTCATGGGA+AGG 0.547296 2.3:-11295424 None:intergenic
AAAGTTAAGGGGAGAATGGT+TGG 0.550742 2.3:-11294863 None:intergenic
TTGTCTTGCATCTTATATTG+TGG 0.552776 2.3:+11295825 MS.gene028994:CDS
TCTTGTTCAGTACGAGGTGG+AGG 0.553828 2.3:-11295199 None:intergenic
TCAAATGACATGGAATTCGC+GGG 0.559911 2.3:+11295502 MS.gene028994:CDS
GAAGAAAGTTAAGGGGAGAA+TGG 0.561998 2.3:-11294867 None:intergenic
ACCACAGTAACCGACTTACC+AGG 0.562319 2.3:-11295988 None:intergenic
GATGAGTTGGATGAGGAAAG+TGG 0.563879 2.3:-11294937 None:intergenic
ATGATGAGGTTGGAGGTGAA+GGG 0.572297 2.3:-11295025 None:intergenic
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.3:-11295069 None:intergenic
TGAGGATTCAGCGACGGTGA+AGG 0.579651 2.3:-11295107 None:intergenic
GGGGTGTTAAGGGAATTTGG+AGG 0.579772 2.3:-11295049 None:intergenic
CATGGGAAGGAAGATCAAGA+GGG 0.580759 2.3:-11295411 None:intergenic
GATGGAACTGAATTTGGTGG+TGG 0.582071 2.3:-11294839 None:intergenic
TACAACCATCTTGCTGCAGA+CGG 0.585188 2.3:+11295298 MS.gene028994:CDS
GAGGTAAATTTGGAACAAGA+TGG 0.586717 2.3:-11295180 None:intergenic
GAAGGGAAAGAAGTGTTGGA+GGG 0.591041 2.3:-11295008 None:intergenic
TAACTTTCTTCGACATACCA+TGG 0.593348 2.3:+11294879 MS.gene028994:CDS
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.3:-11295070 None:intergenic
AATATCAAAACCTGGTAAGT+CGG 0.594383 2.3:+11295978 MS.gene028994:CDS
CTTGCAGATTGTCGTGATAG+CGG 0.594957 2.3:+11295769 MS.gene028994:CDS
TTGTATGATCAAATCAGAGG+AGG 0.597606 2.3:+11295684 MS.gene028994:CDS
ACCTGGTAAGTCGGTTACTG+TGG 0.598866 2.3:+11295987 MS.gene028994:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.606178 2.3:-11294944 None:intergenic
GGGTGTTAAGGGAATTTGGA+GGG 0.611740 2.3:-11295048 None:intergenic
TGTATGATCAAATCAGAGGA+GGG 0.615042 2.3:+11295685 MS.gene028994:CDS
GTCTGCTGAGGATTCAGCGA+CGG 0.615979 2.3:-11295113 None:intergenic
TCTGATTGTAGAGATGGTGG+TGG 0.621226 2.3:+11296114 MS.gene028994:CDS
TATAGGGAAATATCAAAACC+TGG 0.626368 2.3:+11295970 MS.gene028994:CDS
TCATGGGAAGGAAGATCAAG+AGG 0.635606 2.3:-11295412 None:intergenic
AGATTCTGAATCAAATGACA+TGG 0.642714 2.3:+11295492 MS.gene028994:CDS
TTGTCTTGTTCAGTACGAGG+TGG 0.652618 2.3:-11295202 None:intergenic
AGGATAGAGAGTCTTCATCA+AGG 0.656629 2.3:-11295087 None:intergenic
GTATGTCGAAGAAAGTTAAG+GGG 0.670105 2.3:-11294874 None:intergenic
GAGGATGTTGAAGTCTGCTG+AGG 0.672509 2.3:-11295125 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.3:-11295068 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2.3:-11295144 None:intergenic
ATGTTGTCTTGTTCAGTACG+AGG 0.683962 2.3:-11295205 None:intergenic
ACAGGGTGACAATAAAACCA+TGG 0.687760 2.3:-11294896 None:intergenic
AGAAGAAGATACGTTTAACA+GGG 0.696018 2.3:-11294913 None:intergenic
TGGGAAGGAAGATCAAGAGG+GGG 0.698434 2.3:-11295409 None:intergenic
ATGGGAAGGAAGATCAAGAG+GGG 0.712513 2.3:-11295410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAGATGTTAATGAAAT+TGG - chr2.3:11296181-11296200 None:intergenic 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG - chr2.3:11295808-11295827 None:intergenic 20.0%
!!! TCATTACCAAAAACTTATTT+TGG + chr2.3:11295799-11295818 MS.gene028994:CDS 20.0%
! AAACATTGATGTCTGATTAT+AGG + chr2.3:11295953-11295972 MS.gene028994:CDS 25.0%
! AACATTGATGTCTGATTATA+GGG + chr2.3:11295954-11295973 MS.gene028994:CDS 25.0%
! AGATAGAGTTAAAGATCTAA+AGG + chr2.3:11295438-11295457 MS.gene028994:CDS 25.0%
! ATGAGTTAATCGGAAAAAAT+GGG + chr2.3:11295860-11295879 MS.gene028994:CDS 25.0%
! GAAAGTGAATGTTTAAGAAT+GGG - chr2.3:11294983-11295002 None:intergenic 25.0%
! GATAGAGTTAAAGATCTAAA+GGG + chr2.3:11295439-11295458 MS.gene028994:CDS 25.0%
! TCATCATTTCATGAAATTCT+GGG + chr2.3:11295330-11295349 MS.gene028994:CDS 25.0%
! TTCATCATTTCATGAAATTC+TGG + chr2.3:11295329-11295348 MS.gene028994:CDS 25.0%
! TTTAACTCTATCTCTTTCAT+GGG - chr2.3:11295431-11295450 None:intergenic 25.0%
!!! ATTATTGTTGTTTGTTGCTA+TGG - chr2.3:11295371-11295390 None:intergenic 25.0%
!!! CTGTTTATGAAACTGATTTT+GGG + chr2.3:11296031-11296050 MS.gene028994:CDS 25.0%
AATATCAAAACCTGGTAAGT+CGG + chr2.3:11295978-11295997 MS.gene028994:CDS 30.0%
AGAAGAAGATACGTTTAACA+GGG - chr2.3:11294916-11294935 None:intergenic 30.0%
AGATTCTGAATCAAATGACA+TGG + chr2.3:11295492-11295511 MS.gene028994:CDS 30.0%
CTTTAACTCTATCTCTTTCA+TGG - chr2.3:11295432-11295451 None:intergenic 30.0%
GATCATACAAAACCAAATCA+AGG - chr2.3:11295674-11295693 None:intergenic 30.0%
GATGAGTTAATCGGAAAAAA+TGG + chr2.3:11295859-11295878 MS.gene028994:CDS 30.0%
GGAAAGTGAATGTTTAAGAA+TGG - chr2.3:11294984-11295003 None:intergenic 30.0%
GGTGATAAAAAAAGTGATCA+AGG + chr2.3:11295706-11295725 MS.gene028994:CDS 30.0%
GTAAAGAGAGATGAGTTAAT+CGG + chr2.3:11295850-11295869 MS.gene028994:CDS 30.0%
GTTTCATAAACAGCCAATTT+CGG - chr2.3:11296024-11296043 None:intergenic 30.0%
TAGAAGAAGATACGTTTAAC+AGG - chr2.3:11294917-11294936 None:intergenic 30.0%
TATAGGGAAATATCAAAACC+TGG + chr2.3:11295970-11295989 MS.gene028994:CDS 30.0%
TCATCAAGGTAACGTATATA+AGG - chr2.3:11295076-11295095 None:intergenic 30.0%
TTGTCTTGCATCTTATATTG+TGG + chr2.3:11295825-11295844 MS.gene028994:CDS 30.0%
! GTTTTGTATGATCAAATCAG+AGG + chr2.3:11295681-11295700 MS.gene028994:CDS 30.0%
! TTTAAGAGTGATGCTTTGTT+AGG + chr2.3:11295925-11295944 MS.gene028994:CDS 30.0%
!! GCTGTTTATGAAACTGATTT+TGG + chr2.3:11296030-11296049 MS.gene028994:CDS 30.0%
!! TTATGAAACTGATTTTGGGT+GGG + chr2.3:11296035-11296054 MS.gene028994:CDS 30.0%
!! TTTATGAAACTGATTTTGGG+TGG + chr2.3:11296034-11296053 MS.gene028994:CDS 30.0%
AAGGTAACGTATATAAGGAG+GGG - chr2.3:11295071-11295090 None:intergenic 35.0%
AAGTCCAGAAGTTGAAGAAA+TGG + chr2.3:11295584-11295603 MS.gene028994:CDS 35.0%
AGTCCAGAAGTTGAAGAAAT+GGG + chr2.3:11295585-11295604 MS.gene028994:CDS 35.0%
ATCAAATGACATGGAATTCG+CGG + chr2.3:11295501-11295520 MS.gene028994:CDS 35.0%
ATCAGAAAGAGAAATCGAAC+CGG - chr2.3:11296100-11296119 None:intergenic 35.0%
ATTCACAAGATGCTCAAAAC+TGG + chr2.3:11295155-11295174 MS.gene028994:CDS 35.0%
CAAATAGACAACCCAGAATT+TGG - chr2.3:11295271-11295290 None:intergenic 35.0%
CAAGGTAACGTATATAAGGA+GGG - chr2.3:11295072-11295091 None:intergenic 35.0%
GGTATGTCGAAGAAAGTTAA+GGG - chr2.3:11294878-11294897 None:intergenic 35.0%
GTATGTCGAAGAAAGTTAAG+GGG - chr2.3:11294877-11294896 None:intergenic 35.0%
TAACCCATTTCTTCAACTTC+TGG - chr2.3:11295591-11295610 None:intergenic 35.0%
TAACTTTCTTCGACATACCA+TGG + chr2.3:11294879-11294898 MS.gene028994:CDS 35.0%
TCAAGGTAACGTATATAAGG+AGG - chr2.3:11295073-11295092 None:intergenic 35.0%
TCACTGTTCTTCCAAATTCT+GGG + chr2.3:11295257-11295276 MS.gene028994:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG + chr2.3:11296108-11296127 MS.gene028994:CDS 35.0%
TGAACTGCATCAGATTTCTT+AGG - chr2.3:11296066-11296085 None:intergenic 35.0%
TGACCTGAATAGCCATTATA+GGG - chr2.3:11295240-11295259 None:intergenic 35.0%
TGGTATGTCGAAGAAAGTTA+AGG - chr2.3:11294879-11294898 None:intergenic 35.0%
TGTATGATCAAATCAGAGGA+GGG + chr2.3:11295685-11295704 MS.gene028994:CDS 35.0%
TTGTAACAAGCTCCTTGATT+TGG + chr2.3:11295659-11295678 MS.gene028994:CDS 35.0%
TTGTATGATCAAATCAGAGG+AGG + chr2.3:11295684-11295703 MS.gene028994:CDS 35.0%
! GAGGTAAATTTGGAACAAGA+TGG - chr2.3:11295183-11295202 None:intergenic 35.0%
!! TATATAAGGAGGGGTGTTAA+GGG - chr2.3:11295062-11295081 None:intergenic 35.0%
!! TATGAAACTGATTTTGGGTG+GGG + chr2.3:11296036-11296055 MS.gene028994:CDS 35.0%
AAAGTTAAGGGGAGAATGGT+TGG - chr2.3:11294866-11294885 None:intergenic 40.0%
ACAGGGTGACAATAAAACCA+TGG - chr2.3:11294899-11294918 None:intergenic 40.0%
ACTCTATCTCTTTCATGGGA+AGG - chr2.3:11295427-11295446 None:intergenic 40.0%
AGGATAGAGAGTCTTCATCA+AGG - chr2.3:11295090-11295109 None:intergenic 40.0%
CATCCCTATAATGGCTATTC+AGG + chr2.3:11295234-11295253 MS.gene028994:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG - chr2.3:11295147-11295166 None:intergenic 40.0%
CATTCGTGTCATCCCTATAA+TGG + chr2.3:11295225-11295244 MS.gene028994:CDS 40.0%
CGGAAAAAATGGGATTGTTG+TGG + chr2.3:11295870-11295889 MS.gene028994:CDS 40.0%
CTTTCTGATTGTAGAGATGG+TGG + chr2.3:11296111-11296130 MS.gene028994:CDS 40.0%
GAAGAAAGTTAAGGGGAGAA+TGG - chr2.3:11294870-11294889 None:intergenic 40.0%
GCAGTTCATCTTGATTCATC+CGG + chr2.3:11296078-11296097 MS.gene028994:CDS 40.0%
GTCACTGTTCTTCCAAATTC+TGG + chr2.3:11295256-11295275 MS.gene028994:CDS 40.0%
GTGACCTGAATAGCCATTAT+AGG - chr2.3:11295241-11295260 None:intergenic 40.0%
GTTTGAAGGAAGTGATGAGT+TGG - chr2.3:11294953-11294972 None:intergenic 40.0%
TCAAATGACATGGAATTCGC+GGG + chr2.3:11295502-11295521 MS.gene028994:CDS 40.0%
! ATGTTGTCTTGTTCAGTACG+AGG - chr2.3:11295208-11295227 None:intergenic 40.0%
! TGGTGGAATTGAAGTTGGTT+TGG + chr2.3:11296134-11296153 MS.gene028994:CDS 40.0%
!! AAAGAAGTGTTGGAGGGTTA+AGG - chr2.3:11295005-11295024 None:intergenic 40.0%
!! ATGAAACTGATTTTGGGTGG+GGG + chr2.3:11296037-11296056 MS.gene028994:CDS 40.0%
!! GAATGGGAAGTGTTGTTTGA+AGG - chr2.3:11294967-11294986 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+AGG - chr2.3:11295063-11295082 None:intergenic 40.0%
!! GTTGGTGATGGAACTGAATT+TGG - chr2.3:11294848-11294867 None:intergenic 40.0%
!! TGCTATGGCTTTTGAAAGAG+AGG - chr2.3:11295356-11295375 None:intergenic 40.0%
ATGATGAGGTTGGAGGTGAA+GGG - chr2.3:11295028-11295047 None:intergenic 45.0%
ATGGGAAGGAAGATCAAGAG+GGG - chr2.3:11295413-11295432 None:intergenic 45.0%
ATTTGGAGGGATGATGAGGT+TGG - chr2.3:11295038-11295057 None:intergenic 45.0%
CATGGGAAGGAAGATCAAGA+GGG - chr2.3:11295414-11295433 None:intergenic 45.0%
CTTGCAGATTGTCGTGATAG+CGG + chr2.3:11295769-11295788 MS.gene028994:CDS 45.0%
GGGATTGTTGTGGCTTCAAT+TGG + chr2.3:11295880-11295899 MS.gene028994:CDS 45.0%
GGGTGTTAAGGGAATTTGGA+GGG - chr2.3:11295051-11295070 None:intergenic 45.0%
GTACGAGGTGGAGGTAAATT+TGG - chr2.3:11295193-11295212 None:intergenic 45.0%
TACAACCATCTTGCTGCAGA+CGG + chr2.3:11295298-11295317 MS.gene028994:CDS 45.0%
TCATGGGAAGGAAGATCAAG+AGG - chr2.3:11295415-11295434 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG - chr2.3:11294947-11294966 None:intergenic 45.0%
! AGGTGAAGGGAAAGAAGTGT+TGG - chr2.3:11295015-11295034 None:intergenic 45.0%
! ATTTTCCGTCTGCAGCAAGA+TGG - chr2.3:11295306-11295325 None:intergenic 45.0%
! GATGAGTTGGATGAGGAAAG+TGG - chr2.3:11294940-11294959 None:intergenic 45.0%
! GATGGAACTGAATTTGGTGG+TGG - chr2.3:11294842-11294861 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+TGG + chr2.3:11296114-11296133 MS.gene028994:CDS 45.0%
! TTGTCTTGTTCAGTACGAGG+TGG - chr2.3:11295205-11295224 None:intergenic 45.0%
!! AAGTTGGTTTGGCTCTTGAG+AGG + chr2.3:11296145-11296164 MS.gene028994:CDS 45.0%
!! GAAGGGAAAGAAGTGTTGGA+GGG - chr2.3:11295011-11295030 None:intergenic 45.0%
!! GGTGATGGAACTGAATTTGG+TGG - chr2.3:11294845-11294864 None:intergenic 45.0%
!! TGAAGGGAAAGAAGTGTTGG+AGG - chr2.3:11295012-11295031 None:intergenic 45.0%
AAGTCGGTTACTGTGGTTGC+TGG + chr2.3:11295994-11296013 MS.gene028994:CDS 50.0%
ACCTGGTAAGTCGGTTACTG+TGG + chr2.3:11295987-11296006 MS.gene028994:CDS 50.0%
GAGGATGTTGAAGTCTGCTG+AGG - chr2.3:11295128-11295147 None:intergenic 50.0%
GATGATGAGGTTGGAGGTGA+AGG - chr2.3:11295029-11295048 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG - chr2.3:11295042-11295061 None:intergenic 50.0%
TCTTGTTCAGTACGAGGTGG+AGG - chr2.3:11295202-11295221 None:intergenic 50.0%
TGACATGGAATTCGCGGGTT+TGG + chr2.3:11295507-11295526 MS.gene028994:CDS 50.0%
TGGGAAGGAAGATCAAGAGG+GGG - chr2.3:11295412-11295431 None:intergenic 50.0%
! ACCACAGTAACCGACTTACC+AGG - chr2.3:11295991-11296010 None:intergenic 50.0%
! GGGGTGTTAAGGGAATTTGG+AGG - chr2.3:11295052-11295071 None:intergenic 50.0%
!! AAGGGGAGAATGGTTGGTGA+TGG - chr2.3:11294860-11294879 None:intergenic 50.0%
!! GATTGTAGAGATGGTGGTGG+TGG + chr2.3:11296117-11296136 MS.gene028994:CDS 50.0%
!! GGAGGGGTGTTAAGGGAATT+TGG - chr2.3:11295055-11295074 None:intergenic 50.0%
!! GGTGGTGGTGGAATTGAAGT+TGG + chr2.3:11296129-11296148 MS.gene028994:CDS 50.0%
!! GGTTGCTGGTTCACCGAAAT+TGG + chr2.3:11296008-11296027 MS.gene028994:CDS 50.0%
GTCTGCTGAGGATTCAGCGA+CGG - chr2.3:11295116-11295135 None:intergenic 55.0%
TGAGGATTCAGCGACGGTGA+AGG - chr2.3:11295110-11295129 None:intergenic 55.0%
TGGAGGGATGATGAGGTTGG+AGG - chr2.3:11295035-11295054 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 11294809 11296230 11294809 ID=MS.gene028994
chr2.3 mRNA 11294809 11296230 11294809 ID=MS.gene028994.t1;Parent=MS.gene028994
chr2.3 exon 11294809 11296230 11294809 ID=MS.gene028994.t1.exon1;Parent=MS.gene028994.t1
chr2.3 CDS 11294809 11296230 11294809 ID=cds.MS.gene028994.t1;Parent=MS.gene028994.t1
Gene Sequence

>MS.gene028994

ATGAAGGTGATAGAACATAGTCAAGTTGCACCACCACCAAATTCAGTTCCATCACCAACCATTCTCCCCTTAACTTTCTTCGACATACCATGGTTTTATTGTCACCCTGTTAAACGTATCTTCTTCTACCACTTTCCTCATCCAACTCATCACTTCCTTCAAACAACACTTCCCATTCTTAAACATTCACTTTCCTTAACCCTCCAACACTTCTTTCCCTTCACCTCCAACCTCATCATCCCTCCAAATTCCCTTAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTCTATCCTTCACCGTCGCTGAATCCTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCAAAACTGGCACCATCTTGTTCCAAATTTACCTCCACCTCGTACTGAACAAGACAACATTCGTGTCATCCCTATAATGGCTATTCAGGTCACTGTTCTTCCAAATTCTGGGTTGTCTATTTGCTTAAGTTACAACCATCTTGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATTCTGGGCCTCTCTTTCAAAAGCCATAGCAACAAACAACAATAATTTGTCTCTTGAATACTCTCCCCCTCTTGATCTTCCTTCCCATGAAAGAGATAGAGTTAAAGATCTAAAGGGTCTTATACTTGTATACTTGCAAGAATTAGAAGATTCTGAATCAAATGACATGGAATTCGCGGGTTTGGCTCAAGATTCTTATGTTAACAAGATAAGAACAACTTTAGTATTGAGCTATGAACAAGTCCAGAAGTTGAAGAAATGGGTTACTGATAAATGTAAAGAGAGTTATAGAATACAACACTTGTCAACTTTTGTTGTAACAAGCTCCTTGATTTGGTTTTGTATGATCAAATCAGAGGAGGGTGATAAAAAAAGTGATCAAGGTGATTGTGTTGATGTTGATGATCATTGTTATTTTGTGTTTCTTGCAGATTGTCGTGATAGCGGTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAATCGGAAAAAATGGGATTGTTGTGGCTTCAATTGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTGATGCTTTGTTAGGAGCTGAAACATTGATGTCTGATTATAGGGAAATATCAAAACCTGGTAAGTCGGTTACTGTGGTTGCTGGTTCACCGAAATTGGCTGTTTATGAAACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCATCCGGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGTGGTGGAATTGAAGTTGGTTTGGCTCTTGAGAGGTCTAGAATGACCAATTTCATTAACATCTTTCAAGAACAACTTGATAATATTTGTAGCATGTGA
Protein sequence

>MS.gene028994.t1

MKVIEHSQVAPPPNSVPSPTILPLTFFDIPWFYCHPVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFTSNLIIPPNSLNTPPYIRYLDEDSLSFTVAESSADFNILVSDSQDAQNWHHLVPNLPPPRTEQDNIRVIPIMAIQVTVLPNSGLSICLSYNHLAADGKSLHHFMKFWASLSKAIATNNNNLSLEYSPPLDLPSHERDRVKDLKGLILVYLQELEDSESNDMEFAGLAQDSYVNKIRTTLVLSYEQVQKLKKWVTDKCKESYRIQHLSTFVVTSSLIWFCMIKSEEGDKKSDQGDCVDVDDHCYFVFLADCRDSGEFSLPKTYFGNCLASYIVAVKRDELIGKNGIVVASIGIEKKIRDFKSDALLGAETLMSDYREISKPGKSVTVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSGSISLSDCRDGGGGIEVGLALERSRMTNFINIFQEQLDNICSM