AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021916

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021916.t1 MTR_7g014160 93.684 475 30 0 1 475 1 475 0.0 922
MS.gene021916.t1 MTR_7g014610 75.687 473 112 3 5 474 4 476 0.0 724
MS.gene021916.t1 MTR_7g014200 73.319 476 116 5 1 473 1 468 0.0 720
MS.gene021916.t1 MTR_7g014620 67.316 462 119 4 17 475 2 434 0.0 601
MS.gene021916.t1 MTR_7g013850 57.796 481 187 9 6 474 5 481 0.0 533
MS.gene021916.t1 MTR_7g014630 80.602 299 56 2 1 297 1 299 2.61e-172 489
MS.gene021916.t1 MTR_7g014230 43.215 479 238 15 10 476 5 461 8.08e-113 341
MS.gene021916.t1 MTR_7g014330 42.017 476 244 14 10 474 3 457 9.02e-110 333
MS.gene021916.t1 MTR_6g015815 41.151 469 241 11 12 473 20 460 9.54e-110 333
MS.gene021916.t1 MTR_7g014670 82.609 184 32 0 292 475 78 261 2.44e-108 322
MS.gene021916.t1 MTR_6g015320 41.015 473 245 14 9 473 8 454 6.72e-108 328
MS.gene021916.t1 MTR_6g015850 40.086 464 244 11 15 473 23 457 5.79e-107 326
MS.gene021916.t1 MTR_7g014250 42.138 477 240 16 10 473 3 456 4.21e-105 321
MS.gene021916.t1 MTR_6g015315 40.558 466 256 8 10 473 6 452 9.42e-105 320
MS.gene021916.t1 MTR_6g015830 40.087 459 236 14 26 473 30 460 1.34e-103 317
MS.gene021916.t1 MTR_7g014180 76.000 175 40 1 1 175 1 173 7.60e-89 269
MS.gene021916.t1 MTR_3g028210 35.504 476 277 10 9 473 8 464 6.15e-83 264
MS.gene021916.t1 MTR_7g014360 36.567 402 211 10 80 474 23 387 8.66e-76 243
MS.gene021916.t1 MTR_2g089765 32.857 490 281 15 9 473 16 482 1.41e-69 229
MS.gene021916.t1 MTR_3g087640 33.401 491 272 17 10 473 10 472 1.49e-66 221
MS.gene021916.t1 MTR_7g015860 31.078 473 273 9 6 456 2 443 6.55e-66 219
MS.gene021916.t1 MTR_2g089735 33.784 444 260 13 43 473 39 461 9.75e-65 216
MS.gene021916.t1 MTR_2g089650 32.454 493 283 17 1 473 1 463 8.22e-63 211
MS.gene021916.t1 MTR_2g089670 31.602 462 277 13 26 473 41 477 4.52e-61 207
MS.gene021916.t1 MTR_2g089755 32.328 464 269 15 30 473 37 475 2.43e-60 205
MS.gene021916.t1 MTR_8g012750 30.522 498 292 15 9 475 3 477 2.36e-59 202
MS.gene021916.t1 MTR_6g015310 33.419 389 190 10 65 451 12 333 3.05e-59 198
MS.gene021916.t1 MTR_2g089665 28.256 453 195 16 9 450 2 335 1.21e-37 141
MS.gene021916.t1 MTR_7g014310 30.460 348 170 10 115 458 29 308 3.60e-37 139
MS.gene021916.t1 MTR_3g435300 31.802 283 164 8 10 279 4 270 3.62e-35 132
MS.gene021916.t1 MTR_7g086000 25.806 496 303 21 8 476 3 460 1.01e-22 100
MS.gene021916.t1 MTR_3g026950 25.166 453 262 20 55 469 34 447 2.90e-22 99.4
MS.gene021916.t1 MTR_6g045553 26.419 458 250 19 8 425 13 423 8.02e-20 92.4
MS.gene021916.t1 MTR_8g075610 24.194 434 272 16 52 468 23 416 8.20e-20 92.0
MS.gene021916.t1 MTR_3g070170 24.890 454 289 16 3 435 6 428 1.13e-19 92.0
MS.gene021916.t1 MTR_4g127650 25.474 475 300 18 17 473 18 456 6.07e-19 89.7
MS.gene021916.t1 MTR_4g007540 24.074 486 280 21 9 466 3 427 3.43e-18 87.0
MS.gene021916.t1 MTR_8g079950 24.161 447 281 14 12 449 8 405 4.47e-18 87.0
MS.gene021916.t1 MTR_3g049150 25.400 437 258 18 65 473 51 447 5.34e-18 86.7
MS.gene021916.t1 MTR_7g085930 23.984 492 307 17 7 469 4 457 5.39e-17 83.6
MS.gene021916.t1 MTR_4g097090 24.152 501 307 18 1 473 1 456 1.03e-16 82.8
MS.gene021916.t1 MTR_3g098980 24.079 407 267 13 68 470 65 433 9.79e-16 79.7
MS.gene021916.t1 MTR_4g094828 22.616 451 282 16 26 455 25 429 1.33e-15 79.3
MS.gene021916.t1 MTR_7g014210 38.889 108 63 3 330 435 24 130 3.10e-15 73.9
MS.gene021916.t1 MTR_3g026310 24.153 472 291 20 9 457 4 431 5.19e-15 77.4
MS.gene021916.t1 MTR_8g079970 22.870 446 288 15 12 449 8 405 6.41e-15 77.0
MS.gene021916.t1 MTR_8g096530 21.935 465 314 14 5 465 3 422 1.05e-14 76.6
MS.gene021916.t1 MTR_7g014205 35.088 114 61 3 323 435 13 114 4.82e-14 68.9
MS.gene021916.t1 MTR_7g085990 24.145 468 275 18 38 469 30 453 8.03e-14 73.9
MS.gene021916.t1 MTR_4g022720 24.396 414 238 15 69 457 55 418 4.13e-13 71.6
MS.gene021916.t1 MTR_4g022290 22.197 446 276 15 30 455 30 424 5.01e-13 71.2
MS.gene021916.t1 MTR_4g022670 25.581 387 217 15 69 429 55 396 1.13e-12 70.1
MS.gene021916.t1 MTR_4g022800 24.048 420 249 15 69 463 55 429 1.87e-12 69.3
MS.gene021916.t1 MTR_7g026860 25.854 410 231 14 69 456 55 413 2.64e-12 68.9
MS.gene021916.t1 MTR_1g053315 22.750 400 241 17 46 425 58 409 3.91e-11 65.5
MS.gene021916.t1 MTR_7g014340 50.704 71 29 2 10 77 3 70 4.45e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021916.t1 AT5G39080 39.309 463 261 13 7 463 3 451 3.59e-99 306
MS.gene021916.t1 AT5G39050 39.451 474 266 14 7 473 8 467 7.23e-96 297
MS.gene021916.t1 AT3G29590 39.203 477 252 12 4 473 3 448 1.65e-94 293
MS.gene021916.t1 AT3G29670 38.530 449 245 9 29 473 28 449 7.44e-91 284
MS.gene021916.t1 AT3G29635 36.807 451 261 10 29 476 28 457 4.43e-87 274
MS.gene021916.t1 AT5G39090 37.255 459 252 14 21 473 19 447 6.85e-87 273
MS.gene021916.t1 AT3G29680 33.691 466 250 9 29 475 24 449 9.51e-76 245
MS.gene021916.t1 AT5G61160 30.983 468 296 10 9 471 3 448 2.86e-73 238
MS.gene021916.t1 AT1G03940 31.837 490 274 14 10 473 9 464 2.66e-62 210
MS.gene021916.t1 AT1G03495 32.500 360 200 13 11 354 10 342 1.19e-40 149
MS.gene021916.t1 AT5G23940 26.582 474 292 20 9 463 3 439 5.10e-23 102
MS.gene021916.t1 AT3G29720 31.905 210 119 7 106 310 26 216 1.07e-19 88.2
MS.gene021916.t1 AT5G41040 25.238 420 261 19 63 471 63 440 1.04e-18 89.0
MS.gene021916.t1 AT5G41040 25.420 417 258 19 66 471 82 456 1.24e-18 88.6
MS.gene021916.t1 AT5G48930 23.881 469 300 20 9 465 3 426 1.49e-17 85.1
MS.gene021916.t1 AT3G29690 27.811 169 81 4 323 473 33 178 5.31e-16 76.3

Find 90 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTACTTTGACATATTT+TGG 0.126266 7.1:-81680711 MS.gene021916:CDS
CCATTACCAAATAACTATTT+TGG 0.129400 7.1:-81679794 MS.gene021916:CDS
ACAAAAGATGATAAAGATTT+TGG 0.133685 7.1:+81679932 None:intergenic
TTTAGAACTTTGTTTGTTAA+AGG 0.152096 7.1:-81679407 MS.gene021916:CDS
TTTGGAGTATATTGGATTAT+TGG 0.190059 7.1:+81680514 None:intergenic
CTTTCGTTTCCTTGTTCATT+TGG 0.190613 7.1:+81680100 None:intergenic
CAATTTCCAAAATAGTTATT+TGG 0.203936 7.1:+81679788 None:intergenic
CTCCATCATTTGGAGTATAT+TGG 0.207093 7.1:+81680506 None:intergenic
GTGACAAGTTCACAAATAAT+TGG 0.230254 7.1:-81680147 MS.gene021916:CDS
GTTATCGAAATGGGAATTAT+TGG 0.242099 7.1:-81679978 MS.gene021916:CDS
TTTCGTTTCCTTGTTCATTT+GGG 0.243657 7.1:+81680101 None:intergenic
GAAGGGTGTGAATGTGAATT+TGG 0.246248 7.1:+81680646 None:intergenic
GAGAGTGAAGATTTGAGAAT+TGG 0.258335 7.1:+81680601 None:intergenic
GAAAAGGAGAAAGAGAAGTT+TGG 0.285622 7.1:-81679857 MS.gene021916:CDS
CGAACATAGTCCTCGAGTTT+TGG 0.302201 7.1:+81680052 None:intergenic
TGCCTATTCGCTTGTTTGTT+TGG 0.316376 7.1:-81679900 MS.gene021916:CDS
CAAGCTCACACGTGAAGATT+TGG 0.321812 7.1:-81680020 MS.gene021916:CDS
GGTGTTTATGAGATTGATTT+TGG 0.325995 7.1:-81679560 MS.gene021916:CDS
CCAAAATAGTTATTTGGTAA+TGG 0.352964 7.1:+81679794 None:intergenic
CTTTAGCTGGTAACATCGTT+TGG 0.362068 7.1:-81680555 MS.gene021916:CDS
AGCAAATGGTGTTATCGAAA+TGG 0.363374 7.1:-81679988 MS.gene021916:CDS
ATCAAGGAAACTCCATCATT+TGG 0.368212 7.1:+81680496 None:intergenic
ACTCATCATGCTGTTCTTGA+TGG 0.374958 7.1:-81680304 MS.gene021916:CDS
AATGAAAAGGGTGTTCTTGA+TGG 0.383812 7.1:-81679665 MS.gene021916:CDS
AGCAAAGGTGGAATTGAAGT+TGG 0.392413 7.1:-81679461 MS.gene021916:CDS
GTTGCTGGGTCTAATAGATT+TGG 0.400903 7.1:-81679581 MS.gene021916:CDS
TTTAACGTTGTTGTTGTTGT+TGG 0.405998 7.1:+81680792 None:intergenic
AAAAGGAGAAAGAGAAGTTT+GGG 0.406901 7.1:-81679856 MS.gene021916:CDS
GAAACTATCTCCACCTTTGT+TGG 0.407590 7.1:+81679527 None:intergenic
AACCATGTTCATCAAAGCTT+GGG 0.411745 7.1:-81680272 MS.gene021916:CDS
AATAAACATGATAAATGAAA+AGG 0.414449 7.1:-81679678 MS.gene021916:CDS
TAGAGGTTTAACCATTGCTT+TGG 0.417032 7.1:-81679498 MS.gene021916:CDS
AATATGTCAAAGTAAGTAAG+AGG 0.422390 7.1:+81680715 None:intergenic
TTTGAAATGATGGGAGTTGC+TGG 0.422760 7.1:-81679596 MS.gene021916:CDS
AACGAGACAAAGAAGCTTCA+TGG 0.423717 7.1:+81680425 None:intergenic
ATGATTTCCCTGTCTAATAG+AGG 0.429761 7.1:+81680187 None:intergenic
AGGTTTAACCATTGCTTTGG+CGG 0.432846 7.1:-81679495 MS.gene021916:CDS
TGTTTGGCAAAAGCAATTCA+TGG 0.435306 7.1:-81679884 MS.gene021916:CDS
GCAAATGGTGTTATCGAAAT+GGG 0.438928 7.1:-81679987 MS.gene021916:CDS
CAACCATGTTCATCAAAGCT+TGG 0.444772 7.1:-81680273 MS.gene021916:CDS
CAAGACTTTCTCCCTTTAGC+TGG 0.445546 7.1:-81680568 MS.gene021916:CDS
GCAAAGGTGGAATTGAAGTT+GGG 0.447294 7.1:-81679460 MS.gene021916:CDS
TGCCAAACAAACAAGCGAAT+AGG 0.447920 7.1:+81679898 None:intergenic
ATCCAATATACTCCAAATGA+TGG 0.454687 7.1:-81680508 MS.gene021916:CDS
GAGATAGTTTCTGCGGATAG+AGG 0.456278 7.1:-81679515 MS.gene021916:CDS
AGCAATTCATGGAGTTGAAA+AGG 0.457057 7.1:-81679873 MS.gene021916:CDS
TTTGGATAAAATAAAGCAAA+TGG 0.463119 7.1:-81680002 MS.gene021916:CDS
TCTTGTTGATACAAAACCAT+TGG 0.464537 7.1:-81679753 MS.gene021916:CDS
AGTTAAAACCTCTATTAGAC+AGG 0.472806 7.1:-81680195 MS.gene021916:CDS
AAGGGTGTGAATGTGAATTT+GGG 0.480626 7.1:+81680647 None:intergenic
TTGTTCATTTGGGGACATCA+TGG 0.480854 7.1:+81680111 None:intergenic
ATAAACATGATAAATGAAAA+GGG 0.491218 7.1:-81679677 MS.gene021916:CDS
ATTGGTTGTTGAGATTCTAA+AGG 0.497127 7.1:+81680532 None:intergenic
TGTTCATAATAAGCATGTAA+TGG 0.501751 7.1:-81679435 MS.gene021916:CDS
CAAACGATGTTACCAGCTAA+AGG 0.503485 7.1:+81680556 None:intergenic
AGCTTTGATGAACATGGTTG+AGG 0.508130 7.1:+81680276 None:intergenic
AGCTTCTTGAAGAAGAAAGA+AGG 0.508191 7.1:+81680628 None:intergenic
CAGCTAAAGGGAGAAAGTCT+TGG 0.511543 7.1:+81680569 None:intergenic
TTTAACTCTGGCAACAAAGT+TGG 0.512683 7.1:+81680211 None:intergenic
AAACGATGTTACCAGCTAAA+GGG 0.515290 7.1:+81680557 None:intergenic
AAATAGTTATTTGGTAATGG+TGG 0.519048 7.1:+81679797 None:intergenic
ATTAGACTCTGCAATGATCA+AGG 0.522107 7.1:+81680480 None:intergenic
TTGGATTACATAAACGAAGA+TGG 0.525487 7.1:-81679734 MS.gene021916:CDS
ACGAGACAAAGAAGCTTCAT+GGG 0.525539 7.1:+81680426 None:intergenic
TCTTCGTTTATGTAATCCAA+TGG 0.526428 7.1:+81679737 None:intergenic
ATCATCAAAGACAACGGACT+TGG 0.535734 7.1:-81680169 MS.gene021916:CDS
CTAAAGGGAGAAAGTCTTGG+AGG 0.549374 7.1:+81680572 None:intergenic
TAACCTTGCTCTGCAATCTA+CGG 0.549902 7.1:+81679823 None:intergenic
TTCGTTTCCTTGTTCATTTG+GGG 0.568749 7.1:+81680102 None:intergenic
TTTGCTCTCCGCCAAAGCAA+TGG 0.572654 7.1:+81679487 None:intergenic
ATATGTCAAAGTAAGTAAGA+GGG 0.583236 7.1:+81680716 None:intergenic
ATGATGAGTGCTTATTCCAA+TGG 0.600520 7.1:+81680318 None:intergenic
GAATCTGTCGATTCTAAGTG+TGG 0.604551 7.1:+81680394 None:intergenic
AGCCCAAGCTTTGATGAACA+TGG 0.605776 7.1:+81680270 None:intergenic
TATGTCAAAGTAAGTAAGAG+GGG 0.605853 7.1:+81680717 None:intergenic
GCTTCTTGAAGAAGAAAGAA+GGG 0.606219 7.1:+81680629 None:intergenic
TCACCGTAGATTGCAGAGCA+AGG 0.607885 7.1:-81679826 MS.gene021916:CDS
TGGTTGGGGAAGACCAACAA+AGG 0.614189 7.1:-81679540 MS.gene021916:CDS
GGTGTGAATGTGAATTTGGG+AGG 0.625969 7.1:+81680650 None:intergenic
TTGAAATGATGGGAGTTGCT+GGG 0.626589 7.1:-81679595 MS.gene021916:CDS
GAGAGCAAAGATAGCAAAGG+TGG 0.627428 7.1:-81679473 MS.gene021916:CDS
ATGATGTCCCCAAATGAACA+AGG 0.636834 7.1:-81680109 MS.gene021916:CDS
TTGGGGAAGACCAACAAAGG+TGG 0.638548 7.1:-81679537 MS.gene021916:CDS
TAAAGGGAGAAAGTCTTGGA+GGG 0.642807 7.1:+81680573 None:intergenic
GTGTGAATGTGAATTTGGGA+GGG 0.652561 7.1:+81680651 None:intergenic
GCGGAGAGCAAAGATAGCAA+AGG 0.663654 7.1:-81679476 MS.gene021916:CDS
AAAGGTGGAGATAGTTTCTG+CGG 0.670530 7.1:-81679522 MS.gene021916:CDS
GTTAAAACCTCTATTAGACA+GGG 0.687259 7.1:-81680194 MS.gene021916:CDS
AGGGAAATCATCAAAGACAA+CGG 0.689246 7.1:-81680175 MS.gene021916:CDS
CGAGACAAAGAAGCTTCATG+GGG 0.726125 7.1:+81680427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAACATGATAAATGAAA+AGG - chr7.1:81680512-81680531 MS.gene021916:CDS 15.0%
!! ATAAACATGATAAATGAAAA+GGG - chr7.1:81680513-81680532 MS.gene021916:CDS 15.0%
!! CAATTTCCAAAATAGTTATT+TGG + chr7.1:81680405-81680424 None:intergenic 20.0%
!! TTTGGATAAAATAAAGCAAA+TGG - chr7.1:81680188-81680207 MS.gene021916:CDS 20.0%
!!! AAGTGAAAAATTTGAAATGA+TGG - chr7.1:81680584-81680603 MS.gene021916:CDS 20.0%
!!! ACAAAAGATGATAAAGATTT+TGG + chr7.1:81680261-81680280 None:intergenic 20.0%
!!! AGTGAAAAATTTGAAATGAT+GGG - chr7.1:81680585-81680604 MS.gene021916:CDS 20.0%
!!! TTACTTACTTTGACATATTT+TGG - chr7.1:81679479-81679498 MS.gene021916:CDS 20.0%
!!! TTTAGAACTTTGTTTGTTAA+AGG - chr7.1:81680783-81680802 MS.gene021916:CDS 20.0%
! AATATGTCAAAGTAAGTAAG+AGG + chr7.1:81679478-81679497 None:intergenic 25.0%
! ATATGTCAAAGTAAGTAAGA+GGG + chr7.1:81679477-81679496 None:intergenic 25.0%
! CCAAAATAGTTATTTGGTAA+TGG + chr7.1:81680399-81680418 None:intergenic 25.0%
! TGTTCATAATAAGCATGTAA+TGG - chr7.1:81680755-81680774 MS.gene021916:CDS 25.0%
!! CCATTACCAAATAACTATTT+TGG - chr7.1:81680396-81680415 MS.gene021916:CDS 25.0%
!! TTTGGAGTATATTGGATTAT+TGG + chr7.1:81679679-81679698 None:intergenic 25.0%
!!! AAATAGTTATTTGGTAATGG+TGG + chr7.1:81680396-81680415 None:intergenic 25.0%
!!! ACTATTTTGGAAATTGTGTA+TGG - chr7.1:81680409-81680428 MS.gene021916:CDS 25.0%
!!! CTATTTTGGAAATTGTGTAT+GGG - chr7.1:81680410-81680429 MS.gene021916:CDS 25.0%
!!! TATTTTGGAAATTGTGTATG+GGG - chr7.1:81680411-81680430 MS.gene021916:CDS 25.0%
!!! TTATGAGATTGATTTTGGTT+GGG - chr7.1:81680635-81680654 MS.gene021916:CDS 25.0%
!!! TTTATGAGATTGATTTTGGT+TGG - chr7.1:81680634-81680653 MS.gene021916:CDS 25.0%
AAAAGGAGAAAGAGAAGTTT+GGG - chr7.1:81680334-81680353 MS.gene021916:CDS 30.0%
AGTTAAAACCTCTATTAGAC+AGG - chr7.1:81679995-81680014 MS.gene021916:CDS 30.0%
ATCCAATATACTCCAAATGA+TGG - chr7.1:81679682-81679701 MS.gene021916:CDS 30.0%
ATTGGTTGTTGAGATTCTAA+AGG + chr7.1:81679661-81679680 None:intergenic 30.0%
GTGACAAGTTCACAAATAAT+TGG - chr7.1:81680043-81680062 MS.gene021916:CDS 30.0%
GTTAAAACCTCTATTAGACA+GGG - chr7.1:81679996-81680015 MS.gene021916:CDS 30.0%
GTTATCGAAATGGGAATTAT+TGG - chr7.1:81680212-81680231 MS.gene021916:CDS 30.0%
TAGAAAAAAACACGTTCTAC+TGG + chr7.1:81679517-81679536 None:intergenic 30.0%
TATGTCAAAGTAAGTAAGAG+GGG + chr7.1:81679476-81679495 None:intergenic 30.0%
TCTTCGTTTATGTAATCCAA+TGG + chr7.1:81680456-81680475 None:intergenic 30.0%
TCTTGTTGATACAAAACCAT+TGG - chr7.1:81680437-81680456 MS.gene021916:CDS 30.0%
TTGGATTACATAAACGAAGA+TGG - chr7.1:81680456-81680475 MS.gene021916:CDS 30.0%
TTTCGTTTCCTTGTTCATTT+GGG + chr7.1:81680092-81680111 None:intergenic 30.0%
! AAAAACCACTTTCTGGAAAA+AGG + chr7.1:81679852-81679871 None:intergenic 30.0%
! AAAACCACTTTCTGGAAAAA+GGG + chr7.1:81679851-81679870 None:intergenic 30.0%
! TTTAACGTTGTTGTTGTTGT+TGG + chr7.1:81679401-81679420 None:intergenic 30.0%
!! GGTGTTTATGAGATTGATTT+TGG - chr7.1:81680630-81680649 MS.gene021916:CDS 30.0%
!!! ACTTTGACATATTTTGGCTA+AGG - chr7.1:81679485-81679504 MS.gene021916:CDS 30.0%
!!! TATGAGATTGATTTTGGTTG+GGG - chr7.1:81680636-81680655 MS.gene021916:CDS 30.0%
!!! TCTAATAGAGGTTTTAACTC+TGG + chr7.1:81679994-81680013 None:intergenic 30.0%
AAAAAACACGTTCTACTGGA+TGG + chr7.1:81679513-81679532 None:intergenic 35.0%
AAACGATGTTACCAGCTAAA+GGG + chr7.1:81679636-81679655 None:intergenic 35.0%
AACCATGTTCATCAAAGCTT+GGG - chr7.1:81679918-81679937 MS.gene021916:CDS 35.0%
AGCAATTCATGGAGTTGAAA+AGG - chr7.1:81680317-81680336 MS.gene021916:CDS 35.0%
AGCTTCTTGAAGAAGAAAGA+AGG + chr7.1:81679565-81679584 None:intergenic 35.0%
AGGGAAATCATCAAAGACAA+CGG - chr7.1:81680015-81680034 MS.gene021916:CDS 35.0%
ATCAAGGAAACTCCATCATT+TGG + chr7.1:81679697-81679716 None:intergenic 35.0%
ATGATGAGTGCTTATTCCAA+TGG + chr7.1:81679875-81679894 None:intergenic 35.0%
ATGATTTCCCTGTCTAATAG+AGG + chr7.1:81680006-81680025 None:intergenic 35.0%
ATTAGACTCTGCAATGATCA+AGG + chr7.1:81679713-81679732 None:intergenic 35.0%
CTTTCGTTTCCTTGTTCATT+TGG + chr7.1:81680093-81680112 None:intergenic 35.0%
GAAAAGGAGAAAGAGAAGTT+TGG - chr7.1:81680333-81680352 MS.gene021916:CDS 35.0%
GAGAGTGAAGATTTGAGAAT+TGG + chr7.1:81679592-81679611 None:intergenic 35.0%
GCTTCTTGAAGAAGAAAGAA+GGG + chr7.1:81679564-81679583 None:intergenic 35.0%
TAGAGGTTTAACCATTGCTT+TGG - chr7.1:81680692-81680711 MS.gene021916:CDS 35.0%
TGTTTGGCAAAAGCAATTCA+TGG - chr7.1:81680306-81680325 MS.gene021916:CDS 35.0%
TTCGTTTCCTTGTTCATTTG+GGG + chr7.1:81680091-81680110 None:intergenic 35.0%
TTTAACTCTGGCAACAAAGT+TGG + chr7.1:81679982-81680001 None:intergenic 35.0%
! AAGGGTGTGAATGTGAATTT+GGG + chr7.1:81679546-81679565 None:intergenic 35.0%
! ATAACCCTTTTTCCAGAAAG+TGG - chr7.1:81679844-81679863 MS.gene021916:CDS 35.0%
! CTCCATCATTTGGAGTATAT+TGG + chr7.1:81679687-81679706 None:intergenic 35.0%
! GAAAAACTTTGGTGTGTTCA+TGG + chr7.1:81679426-81679445 None:intergenic 35.0%
! TTTCTGGAAAAAGGGTTATC+TGG + chr7.1:81679843-81679862 None:intergenic 35.0%
!! AATGAAAAGGGTGTTCTTGA+TGG - chr7.1:81680525-81680544 MS.gene021916:CDS 35.0%
!! AGCAAATGGTGTTATCGAAA+TGG - chr7.1:81680202-81680221 MS.gene021916:CDS 35.0%
!! GCAAATGGTGTTATCGAAAT+GGG - chr7.1:81680203-81680222 MS.gene021916:CDS 35.0%
!! TGATGATGGAGGAAAAACTT+TGG + chr7.1:81679437-81679456 None:intergenic 35.0%
!!! GAAGATGGAGTGTTTTTAGT+TGG - chr7.1:81680471-81680490 MS.gene021916:CDS 35.0%
!!! GTTGTTTTTCGAGTTGATGA+TGG + chr7.1:81679451-81679470 None:intergenic 35.0%
AAAGGTGGAGATAGTTTCTG+CGG - chr7.1:81680668-81680687 MS.gene021916:CDS 40.0%
AACGAGACAAAGAAGCTTCA+TGG + chr7.1:81679768-81679787 None:intergenic 40.0%
ACGAGACAAAGAAGCTTCAT+GGG + chr7.1:81679767-81679786 None:intergenic 40.0%
ACTCATCATGCTGTTCTTGA+TGG - chr7.1:81679886-81679905 MS.gene021916:CDS 40.0%
AGCAAAGGTGGAATTGAAGT+TGG - chr7.1:81680729-81680748 MS.gene021916:CDS 40.0%
AGGTTTAACCATTGCTTTGG+CGG - chr7.1:81680695-81680714 MS.gene021916:CDS 40.0%
ATGATGTCCCCAAATGAACA+AGG - chr7.1:81680081-81680100 MS.gene021916:CDS 40.0%
CAAACGATGTTACCAGCTAA+AGG + chr7.1:81679637-81679656 None:intergenic 40.0%
CAACCATGTTCATCAAAGCT+TGG - chr7.1:81679917-81679936 MS.gene021916:CDS 40.0%
CCAATGGAAAAACCACTTTC+TGG + chr7.1:81679859-81679878 None:intergenic 40.0%
CTTTAGCTGGTAACATCGTT+TGG - chr7.1:81679635-81679654 MS.gene021916:CDS 40.0%
GAAACTATCTCCACCTTTGT+TGG + chr7.1:81680666-81680685 None:intergenic 40.0%
GCAAAGGTGGAATTGAAGTT+GGG - chr7.1:81680730-81680749 MS.gene021916:CDS 40.0%
GTGTGAATGTGAATTTGGGA+GGG + chr7.1:81679542-81679561 None:intergenic 40.0%
GTTGCTGGGTCTAATAGATT+TGG - chr7.1:81680609-81680628 MS.gene021916:CDS 40.0%
TAAAGGGAGAAAGTCTTGGA+GGG + chr7.1:81679620-81679639 None:intergenic 40.0%
TAACCTTGCTCTGCAATCTA+CGG + chr7.1:81680370-81680389 None:intergenic 40.0%
TGCCAAACAAACAAGCGAAT+AGG + chr7.1:81680295-81680314 None:intergenic 40.0%
TGCCTATTCGCTTGTTTGTT+TGG - chr7.1:81680290-81680309 MS.gene021916:CDS 40.0%
TTGTTCATTTGGGGACATCA+TGG + chr7.1:81680082-81680101 None:intergenic 40.0%
! ACCTTTTGAACCAAAACTCG+AGG - chr7.1:81680128-81680147 MS.gene021916:CDS 40.0%
! AGCTTTGATGAACATGGTTG+AGG + chr7.1:81679917-81679936 None:intergenic 40.0%
! ATCATCAAAGACAACGGACT+TGG - chr7.1:81680021-81680040 MS.gene021916:CDS 40.0%
! CCAGAAAGTGGTTTTTCCAT+TGG - chr7.1:81679856-81679875 MS.gene021916:CDS 40.0%
! GAAGGGTGTGAATGTGAATT+TGG + chr7.1:81679547-81679566 None:intergenic 40.0%
! TTGAAATGATGGGAGTTGCT+GGG - chr7.1:81680595-81680614 MS.gene021916:CDS 40.0%
! TTTGAAATGATGGGAGTTGC+TGG - chr7.1:81680594-81680613 MS.gene021916:CDS 40.0%
!! GAATCTGTCGATTCTAAGTG+TGG + chr7.1:81679799-81679818 None:intergenic 40.0%
!!! GTTTTTCGAGTTGATGATGG+AGG + chr7.1:81679448-81679467 None:intergenic 40.0%
!!! TCCTCGAGTTTTGGTTCAAA+AGG + chr7.1:81680132-81680151 None:intergenic 40.0%
CAAGACTTTCTCCCTTTAGC+TGG - chr7.1:81679622-81679641 MS.gene021916:CDS 45.0%
CAAGCTCACACGTGAAGATT+TGG - chr7.1:81680170-81680189 MS.gene021916:CDS 45.0%
CAGCTAAAGGGAGAAAGTCT+TGG + chr7.1:81679624-81679643 None:intergenic 45.0%
CGAGACAAAGAAGCTTCATG+GGG + chr7.1:81679766-81679785 None:intergenic 45.0%
CTAAAGGGAGAAAGTCTTGG+AGG + chr7.1:81679621-81679640 None:intergenic 45.0%
GAGAGCAAAGATAGCAAAGG+TGG - chr7.1:81680717-81680736 MS.gene021916:CDS 45.0%
GAGATAGTTTCTGCGGATAG+AGG - chr7.1:81680675-81680694 MS.gene021916:CDS 45.0%
GGTGTGAATGTGAATTTGGG+AGG + chr7.1:81679543-81679562 None:intergenic 45.0%
! AGCCCAAGCTTTGATGAACA+TGG + chr7.1:81679923-81679942 None:intergenic 45.0%
! CGAACATAGTCCTCGAGTTT+TGG + chr7.1:81680141-81680160 None:intergenic 45.0%
GCGGAGAGCAAAGATAGCAA+AGG - chr7.1:81680714-81680733 MS.gene021916:CDS 50.0%
TCACCGTAGATTGCAGAGCA+AGG - chr7.1:81680364-81680383 MS.gene021916:CDS 50.0%
TGGTTGGGGAAGACCAACAA+AGG - chr7.1:81680650-81680669 MS.gene021916:CDS 50.0%
TTGGGGAAGACCAACAAAGG+TGG - chr7.1:81680653-81680672 MS.gene021916:CDS 50.0%
TTTGCTCTCCGCCAAAGCAA+TGG + chr7.1:81680706-81680725 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 81679391 81680821 81679391 ID=MS.gene021916
chr7.1 mRNA 81679391 81680821 81679391 ID=MS.gene021916.t1;Parent=MS.gene021916
chr7.1 exon 81679391 81680821 81679391 ID=MS.gene021916.t1.exon1;Parent=MS.gene021916.t1
chr7.1 CDS 81679391 81680821 81679391 ID=cds.MS.gene021916.t1;Parent=MS.gene021916.t1
Gene Sequence

>MS.gene021916

ATGGCTTCCAACAACAACAACAACGTTAAAATCCATGAACACACCAAAGTTTTTCCTCCATCATCAACTCGAAAAACAACAACCCCTCTTACTTACTTTGACATATTTTGGCTAAGGTTCCATCCAGTAGAACGTGTTTTTTTCTACACCCTCCCAAATTCACATTCACACCCTTCTTTCTTCTTCAAGAAGCTTGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCCAAGACTTTCTCCCTTTAGCTGGTAACATCGTTTGGCCTTTAGAATCTCAACAACCAATAATCCAATATACTCCAAATGATGGAGTTTCCTTGATCATTGCAGAGTCTAATGCAGATTTCAATCATGTCATTGAAAATTCACCCCATGAAGCTTCTTTGTCTCGTTGTTTTGTACCACACTTAGAATCGACAGATTCTTTTGCTTCTATTATCTCAGTCCAGATAACCCTTTTTCCAGAAAGTGGTTTTTCCATTGGAATAAGCACTCATCATGCTGTTCTTGATGGAAAATCCTCAACCATGTTCATCAAAGCTTGGGCTTATCTATGCAACAAAACTATTGAAACAGAAGAACTACCAACTTTGTTGCCAGAGTTAAAACCTCTATTAGACAGGGAAATCATCAAAGACAACGGACTTGGTGACAAGTTCACAAATAATTGGAGAAAGATCATAACCATGATGTCCCCAAATGAACAAGGAAACGAAAGATGCTTGAAGATTTTACCTTTTGAACCAAAACTCGAGGACTATGTTCGTGCTACATTCAAGCTCACACGTGAAGATTTGGATAAAATAAAGCAAATGGTGTTATCGAAATGGGAATTATTGGACACAAATGAATTGAATTCTAAGCCAAAATCTTTATCATCTTTTGTTCTCACTTGTGCCTATTCGCTTGTTTGTTTGGCAAAAGCAATTCATGGAGTTGAAAAGGAGAAAGAGAAGTTTGGGTTTGCATTCACCGTAGATTGCAGAGCAAGGTTAGAACCACCATTACCAAATAACTATTTTGGAAATTGTGTATGGGGACATCTTGTTGATACAAAACCATTGGATTACATAAACGAAGATGGAGTGTTTTTAGTTGGTAAGTGTATTCATGAGAAAATAAACATGATAAATGAAAAGGGTGTTCTTGATGGAGCTAGTGATATGTTTGATAAATTCGCTTCTTTAGCAAGTGAAAAATTTGAAATGATGGGAGTTGCTGGGTCTAATAGATTTGGTGTTTATGAGATTGATTTTGGTTGGGGAAGACCAACAAAGGTGGAGATAGTTTCTGCGGATAGAGGTTTAACCATTGCTTTGGCGGAGAGCAAAGATAGCAAAGGTGGAATTGAAGTTGGGATTGTTCATAATAAGCATGTAATGGATCTCTTTAGAACTTTGTTTGTTAAAGGACTTTGCATTATTTGA
Protein sequence

>MS.gene021916.t1

MASNNNNNVKIHEHTKVFPPSSTRKTTTPLTYFDIFWLRFHPVERVFFYTLPNSHSHPSFFFKKLVPILKSSLSLTLQDFLPLAGNIVWPLESQQPIIQYTPNDGVSLIIAESNADFNHVIENSPHEASLSRCFVPHLESTDSFASIISVQITLFPESGFSIGISTHHAVLDGKSSTMFIKAWAYLCNKTIETEELPTLLPELKPLLDREIIKDNGLGDKFTNNWRKIITMMSPNEQGNERCLKILPFEPKLEDYVRATFKLTREDLDKIKQMVLSKWELLDTNELNSKPKSLSSFVLTCAYSLVCLAKAIHGVEKEKEKFGFAFTVDCRARLEPPLPNNYFGNCVWGHLVDTKPLDYINEDGVFLVGKCIHEKINMINEKGVLDGASDMFDKFASLASEKFEMMGVAGSNRFGVYEIDFGWGRPTKVEIVSADRGLTIALAESKDSKGGIEVGIVHNKHVMDLFRTLFVKGLCII