AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069422

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069422.t1 MTR_7g013850 89.691 485 45 4 1 482 1 483 0.0 873
MS.gene069422.t1 MTR_7g014200 61.795 479 162 10 5 478 6 468 0.0 563
MS.gene069422.t1 MTR_7g014160 58.664 479 182 10 5 478 6 473 0.0 546
MS.gene069422.t1 MTR_7g014610 60.000 485 177 11 1 478 1 475 0.0 534
MS.gene069422.t1 MTR_7g014620 55.076 463 168 10 20 478 6 432 3.86e-159 458
MS.gene069422.t1 MTR_7g014630 61.538 286 99 7 1 281 1 280 6.46e-114 340
MS.gene069422.t1 MTR_6g015315 39.066 471 262 9 9 478 6 452 2.03e-103 317
MS.gene069422.t1 MTR_6g015320 38.174 482 266 10 1 478 1 454 7.63e-102 313
MS.gene069422.t1 MTR_6g015830 40.289 484 243 14 9 478 9 460 1.50e-100 310
MS.gene069422.t1 MTR_7g014330 39.004 482 254 14 9 478 3 456 1.73e-100 309
MS.gene069422.t1 MTR_6g015850 40.000 490 249 16 1 478 1 457 2.00e-100 309
MS.gene069422.t1 MTR_7g014230 38.750 480 256 13 9 477 5 457 7.92e-100 308
MS.gene069422.t1 MTR_7g014250 37.759 482 260 13 9 478 3 456 8.53e-98 302
MS.gene069422.t1 MTR_6g015815 40.257 467 239 13 20 478 26 460 1.19e-97 302
MS.gene069422.t1 MTR_3g028210 34.286 490 284 12 1 478 1 464 5.75e-76 246
MS.gene069422.t1 MTR_7g014180 68.715 179 49 5 1 178 1 173 5.02e-73 228
MS.gene069422.t1 MTR_7g014670 58.421 190 77 2 290 478 71 259 4.24e-70 224
MS.gene069422.t1 MTR_2g089765 32.114 492 280 16 11 478 21 482 8.21e-68 225
MS.gene069422.t1 MTR_7g014360 32.843 408 227 10 76 478 21 386 1.23e-67 222
MS.gene069422.t1 MTR_2g089670 32.688 465 267 17 28 478 45 477 7.96e-60 204
MS.gene069422.t1 MTR_2g089650 30.040 496 296 15 1 478 1 463 1.25e-58 200
MS.gene069422.t1 MTR_2g089755 30.687 466 281 12 28 478 37 475 1.15e-57 198
MS.gene069422.t1 MTR_7g015860 30.600 500 274 16 4 474 1 456 1.19e-57 198
MS.gene069422.t1 MTR_2g089735 31.264 451 269 12 41 478 39 461 7.70e-57 196
MS.gene069422.t1 MTR_3g087640 29.940 501 288 12 9 481 10 475 2.20e-55 192
MS.gene069422.t1 MTR_8g012750 30.162 494 294 19 8 476 3 470 3.00e-54 189
MS.gene069422.t1 MTR_6g015310 30.457 394 202 9 63 456 12 333 1.05e-49 173
MS.gene069422.t1 MTR_7g014310 28.060 335 169 7 130 461 41 306 1.06e-36 137
MS.gene069422.t1 MTR_2g089665 27.033 455 190 16 11 451 7 333 2.05e-28 115
MS.gene069422.t1 MTR_3g435300 33.047 233 130 8 9 229 4 222 1.23e-25 106
MS.gene069422.t1 MTR_4g007540 23.935 493 288 23 8 476 3 432 3.56e-21 96.3
MS.gene069422.t1 MTR_7g085930 23.984 492 317 18 8 478 6 461 5.63e-21 95.9
MS.gene069422.t1 MTR_8g075610 24.198 405 229 18 44 430 30 374 3.12e-20 93.2
MS.gene069422.t1 MTR_6g045553 23.353 501 306 21 3 471 11 465 1.46e-19 91.7
MS.gene069422.t1 MTR_3g070170 25.272 459 263 19 8 434 12 422 3.66e-19 90.5
MS.gene069422.t1 MTR_7g086000 22.991 448 279 16 7 430 3 408 4.45e-19 90.1
MS.gene069422.t1 MTR_2g064495 23.722 489 293 22 8 476 3 431 9.87e-19 88.6
MS.gene069422.t1 MTR_2g105330 23.722 489 293 22 8 476 3 431 2.74e-18 87.4
MS.gene069422.t1 MTR_7g085990 23.014 491 323 19 8 478 2 457 1.49e-17 85.5
MS.gene069422.t1 MTR_4g022290 22.009 468 290 13 19 468 22 432 9.90e-17 82.8
MS.gene069422.t1 MTR_3g101960 23.953 430 248 17 28 434 29 402 1.44e-16 82.4
MS.gene069422.t1 MTR_4g094838 24.138 435 255 13 19 440 19 391 3.39e-16 80.9
MS.gene069422.t1 MTR_3g049150 24.096 498 299 25 8 478 2 447 5.30e-16 80.5
MS.gene069422.t1 MTR_3g101970 23.859 482 291 18 8 472 6 428 2.43e-15 78.6
MS.gene069422.t1 MTR_7g014205 32.258 124 72 2 318 440 2 114 2.55e-15 72.8
MS.gene069422.t1 MTR_7g014210 35.514 107 67 2 336 440 24 130 4.73e-15 73.2
MS.gene069422.t1 MTR_4g094828 21.294 479 287 17 19 468 20 437 4.76e-15 77.4
MS.gene069422.t1 MTR_4g094842 23.434 431 254 16 62 468 57 435 6.24e-15 77.0
MS.gene069422.t1 MTR_3g098980 23.138 376 224 14 67 430 66 388 7.77e-15 77.0
MS.gene069422.t1 MTR_2g015430 20.950 463 287 15 8 457 2 398 1.19e-14 76.3
MS.gene069422.t1 MTR_8g467580 24.299 428 253 16 17 430 15 385 3.30e-14 75.1
MS.gene069422.t1 MTR_4g022800 22.785 474 286 18 17 468 14 429 5.07e-14 74.3
MS.gene069422.t1 MTR_3g026310 22.026 454 270 16 17 442 14 411 8.09e-14 73.9
MS.gene069422.t1 MTR_7g014340 54.930 71 25 2 9 75 3 70 6.66e-13 65.1
MS.gene069422.t1 MTR_4g022825 21.739 460 285 18 28 468 24 427 7.54e-13 70.9
MS.gene069422.t1 MTR_7g084940 21.918 438 274 17 4 430 12 392 4.50e-12 68.2
MS.gene069422.t1 MTR_7g014220 57.143 56 21 1 22 77 12 64 1.95e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069422.t1 AT5G39080 39.413 477 257 14 8 475 5 458 3.73e-94 293
MS.gene069422.t1 AT3G29590 37.372 487 257 10 1 478 1 448 1.39e-91 286
MS.gene069422.t1 AT5G39050 38.900 491 255 16 4 478 6 467 2.75e-90 283
MS.gene069422.t1 AT5G39090 36.875 480 265 12 4 478 1 447 1.68e-87 275
MS.gene069422.t1 AT3G29635 36.192 478 272 11 8 478 3 454 2.01e-84 268
MS.gene069422.t1 AT3G29670 37.347 490 245 16 8 478 3 449 2.20e-83 265
MS.gene069422.t1 AT3G29680 35.565 478 257 14 8 474 6 443 7.20e-73 238
MS.gene069422.t1 AT1G03940 31.653 496 279 15 9 481 9 467 1.35e-69 229
MS.gene069422.t1 AT5G61160 31.447 477 288 12 8 476 3 448 1.56e-69 229
MS.gene069422.t1 AT1G03495 32.796 372 208 14 1 360 1 342 1.98e-45 162
MS.gene069422.t1 AT5G23940 25.767 489 283 22 8 468 3 439 2.11e-23 103
MS.gene069422.t1 AT5G48930 23.819 487 296 20 8 476 3 432 2.28e-21 96.7
MS.gene069422.t1 AT2G19070 22.467 454 293 14 41 476 37 449 4.87e-21 95.9
MS.gene069422.t1 AT3G29720 33.032 221 104 10 99 304 10 201 2.64e-18 84.0
MS.gene069422.t1 AT2G39980 22.727 484 339 14 1 467 1 466 3.83e-18 87.4
MS.gene069422.t1 AT3G50270 25.902 471 286 16 16 469 17 441 6.93e-18 86.3
MS.gene069422.t1 AT5G57840 22.857 490 305 16 8 478 3 438 6.14e-17 83.6
MS.gene069422.t1 AT5G41040 24.590 427 258 20 61 474 63 438 2.84e-16 81.3
MS.gene069422.t1 AT5G41040 24.590 427 258 20 61 474 79 454 4.37e-16 80.9
MS.gene069422.t1 AT3G50280 23.113 424 273 14 19 434 18 396 4.57e-15 77.8
MS.gene069422.t1 AT5G07850 24.169 451 279 18 1 434 1 405 5.26e-15 77.4
MS.gene069422.t1 AT3G29690 30.719 153 96 3 329 478 33 178 7.35e-15 73.2
MS.gene069422.t1 AT1G28680 23.020 404 242 17 45 433 40 389 1.84e-14 75.9
MS.gene069422.t1 AT3G50300 26.178 382 230 16 64 434 56 396 6.70e-14 73.9
MS.gene069422.t1 AT3G48720 22.356 416 267 13 67 474 61 428 1.30e-13 73.2
MS.gene069422.t1 AT1G28680 22.186 311 198 9 45 352 40 309 3.99e-13 71.2

Find 64 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTTGGGTTGAAGAATT+AGG 0.162139 7.2:+83421798 None:intergenic
TCTAATAAAGGCTCTAAATT+TGG 0.169522 7.2:+83421252 None:intergenic
TGTTTCCTTCGATCAAATTT+TGG 0.183599 7.2:-83421502 MS.gene069422:CDS
GAGAGAGAAGATTTGAGTTT+TGG 0.197463 7.2:+83421657 None:intergenic
TTGAAAGGTAGTATTGAATT+TGG 0.208629 7.2:-83420496 MS.gene069422:CDS
TTCAATATTGTTGTTCCATT+TGG 0.246981 7.2:+83421014 None:intergenic
ACAAAAGTGGACAGCTTCTT+AGG 0.251396 7.2:+83420967 None:intergenic
CGTCATCATTTGGATTGAAT+TGG 0.258288 7.2:+83421562 None:intergenic
CTTTAGCTGGTAACATTGTT+TGG 0.264357 7.2:-83421611 MS.gene069422:CDS
GGAGTATATGAGATTGATTT+TGG 0.276059 7.2:-83420595 MS.gene069422:CDS
TTGAATTGGATGAATGGTTT+TGG 0.294624 7.2:+83421576 None:intergenic
ATGATTGGTGAAGGAGTTAA+AGG 0.329186 7.2:-83420646 MS.gene069422:CDS
AACGAATTCTCAAAATCATT+TGG 0.329734 7.2:+83421198 None:intergenic
GAGAAACTTTGCATTGTTCA+TGG 0.331192 7.2:+83421820 None:intergenic
ATTTGATGAAAATAAATAAC+AGG 0.346339 7.2:-83421044 MS.gene069422:CDS
GTTAAAGGAATAGGAGTTGC+AGG 0.381644 7.2:-83420631 MS.gene069422:CDS
AATTGGTTTGACAGAAAGTA+AGG 0.387323 7.2:-83420521 MS.gene069422:CDS
AAGGAAACTCCGTCATCATT+TGG 0.395044 7.2:+83421552 None:intergenic
GGTGAAGGAGTTAAAGGAAT+AGG 0.395384 7.2:-83420640 MS.gene069422:CDS
TGCATTTCAACCAATCGTTA+AGG 0.404523 7.2:-83421103 MS.gene069422:CDS
TGTGAGAAGGAGAGATAGTT+GGG 0.418473 7.2:+83421785 None:intergenic
ACACACCATGCTGTTCTTGA+TGG 0.421878 7.2:-83421345 MS.gene069422:CDS
ATTGATAGAGGATTAACAAT+TGG 0.431776 7.2:-83420538 MS.gene069422:CDS
TAGAAGAAAATACGTTCTAC+TGG 0.445325 7.2:+83421732 None:intergenic
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7.2:-83420616 MS.gene069422:CDS
AGAATTCGTTCATTAATACT+TGG 0.456841 7.2:-83421185 MS.gene069422:CDS
GAGATTACTTCAATTGATAG+AGG 0.456941 7.2:-83420550 MS.gene069422:CDS
CAACACTTCCTCCCTTTAGC+TGG 0.464034 7.2:-83421624 MS.gene069422:CDS
CAGCTAAAGGGAGGAAGTGT+TGG 0.471757 7.2:+83421625 None:intergenic
TTTGGATTGAATTGGATGAA+TGG 0.472335 7.2:+83421570 None:intergenic
ATGTGAGAAGGAGAGATAGT+TGG 0.473667 7.2:+83421784 None:intergenic
CAAAACAAAAGAGATGGATA+AGG 0.478383 7.2:-83420713 MS.gene069422:CDS
CAAACAATGTTACCAGCTAA+AGG 0.481339 7.2:+83421612 None:intergenic
TATAGATATATAGCTATGAT+TGG 0.488633 7.2:-83420661 MS.gene069422:CDS
AGCACATGTAAGAACAAAAG+TGG 0.494080 7.2:+83420954 None:intergenic
ATAACAGGGTGTTATCCAAA+TGG 0.497827 7.2:-83421029 MS.gene069422:CDS
TATGACTTTACAAAAGAAGA+TGG 0.504011 7.2:-83420766 MS.gene069422:CDS
AAACAATGTTACCAGCTAAA+GGG 0.504045 7.2:+83421613 None:intergenic
AAAACAAAAGAGATGGATAA+GGG 0.505500 7.2:-83420712 MS.gene069422:CDS
GATCGCCTTTGCTATACAAA+CGG 0.514173 7.2:+83420924 None:intergenic
TGGAACAACAATATTGAAGA+AGG 0.519341 7.2:-83421009 MS.gene069422:CDS
ACAGAAAGTAAGGATTTGAA+AGG 0.525092 7.2:-83420511 MS.gene069422:CDS
GTGCTCCAAAATTTGATCGA+AGG 0.536336 7.2:+83421497 None:intergenic
CGAACTGAATCCTTAACGAT+TGG 0.540576 7.2:+83421093 None:intergenic
GTAGGGTGTGAATGTGAACT+TGG 0.545769 7.2:+83421702 None:intergenic
TGTTCTTGATAAGCATGTGA+TGG 0.547164 7.2:-83420470 MS.gene069422:CDS
TGTTTCCGTTTGTATAGCAA+AGG 0.550669 7.2:-83420929 MS.gene069422:CDS
AATCTTGATCTGCAATCCAC+AGG 0.563131 7.2:+83420856 None:intergenic
TATATAGCTATGATTGGTGA+AGG 0.570710 7.2:-83420655 MS.gene069422:CDS
TTATGTCAAAACAAAAGAGA+TGG 0.571134 7.2:-83420719 MS.gene069422:CDS
GTGTGAATGTGAACTTGGGA+GGG 0.578151 7.2:+83421707 None:intergenic
GAATCTGATGATTCTAAGTG+AGG 0.596592 7.2:+83421435 None:intergenic
CAATTCAATCCAAATGATGA+CGG 0.607891 7.2:-83421561 MS.gene069422:CDS
GGTGTGAATGTGAACTTGGG+AGG 0.617310 7.2:+83421706 None:intergenic
GTCACATTGTGCTAAGAGCA+AGG 0.618079 7.2:+83421533 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7.2:-83420621 MS.gene069422:CDS
CAACCATGTTCATCAAAGCA+TGG 0.631200 7.2:-83421314 MS.gene069422:CDS
ATGGTGTGTGCTTATTCCAA+TGG 0.644576 7.2:+83421359 None:intergenic
CGAGACAAAGAAGCTTCTTG+TGG 0.646679 7.2:+83421468 None:intergenic
TTTGATGAAAATAAATAACA+GGG 0.650830 7.2:-83421043 MS.gene069422:CDS
TAGGGTGTGAATGTGAACTT+GGG 0.653813 7.2:+83421703 None:intergenic
AGACCATGCTTTGATGAACA+TGG 0.653845 7.2:+83421311 None:intergenic
CAATGTTACCAGCTAAAGGG+AGG 0.656506 7.2:+83421616 None:intergenic
TTAAAGGAATAGGAGTTGCA+GGG 0.673383 7.2:-83420630 MS.gene069422:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGATGAAAATAAATAAC+AGG - chr7.2:83421228-83421247 MS.gene069422:CDS 15.0%
!! TTTGATGAAAATAAATAACA+GGG - chr7.2:83421229-83421248 MS.gene069422:CDS 15.0%
!!! CAATTTCCAAAATAATTTTT+AGG + chr7.2:83421455-83421474 None:intergenic 15.0%
!! TATAGATATATAGCTATGAT+TGG - chr7.2:83421611-83421630 MS.gene069422:CDS 20.0%
!!! AAAAAGCAGAAATTTTCTTT+TGG - chr7.2:83421389-83421408 MS.gene069422:CDS 20.0%
!!! AAATAATTTTTAGGAATTGG+TGG + chr7.2:83421446-83421465 None:intergenic 20.0%
!!! AGATTTTCAAAGAAAAAAGT+AGG + chr7.2:83420591-83420610 None:intergenic 20.0%
!!! CCAAAATAATTTTTAGGAAT+TGG + chr7.2:83421449-83421468 None:intergenic 20.0%
!!! CCAATTCCTAAAAATTATTT+TGG - chr7.2:83421446-83421465 MS.gene069422:CDS 20.0%
!!! GATTTTCAAAGAAAAAAGTA+GGG + chr7.2:83420590-83420609 None:intergenic 20.0%
! AAAACAAAAGAGATGGATAA+GGG - chr7.2:83421560-83421579 MS.gene069422:CDS 25.0%
! AACGAATTCTCAAAATCATT+TGG + chr7.2:83421077-83421096 None:intergenic 25.0%
! AGAATTCGTTCATTAATACT+TGG - chr7.2:83421087-83421106 MS.gene069422:CDS 25.0%
! ATTGATAGAGGATTAACAAT+TGG - chr7.2:83421734-83421753 MS.gene069422:CDS 25.0%
! TAATAACCCTTCATGAAAAA+TGG + chr7.2:83421840-83421859 None:intergenic 25.0%
! TATGACTTTACAAAAGAAGA+TGG - chr7.2:83421506-83421525 MS.gene069422:CDS 25.0%
! TTATGTCAAAACAAAAGAGA+TGG - chr7.2:83421553-83421572 MS.gene069422:CDS 25.0%
!! TCTTCTTTTGTAAAGTCATA+TGG + chr7.2:83421506-83421525 None:intergenic 25.0%
!! TTCAATATTGTTGTTCCATT+TGG + chr7.2:83421261-83421280 None:intergenic 25.0%
!! TTGAAAGGTAGTATTGAATT+TGG - chr7.2:83421776-83421795 MS.gene069422:CDS 25.0%
!!! AAAAACCATTTTTCGGAAAA+AGG + chr7.2:83420893-83420912 None:intergenic 25.0%
!!! AAAACCATTTTTCGGAAAAA+GGG + chr7.2:83420892-83420911 None:intergenic 25.0%
!!! ATTAGAACCATTTTTGGAAA+GGG - chr7.2:83421037-83421056 MS.gene069422:CDS 25.0%
!!! TATGAGATTGATTTTGGTTT+TGG - chr7.2:83421683-83421702 MS.gene069422:CDS 25.0%
!!! TATTAGAACCATTTTTGGAA+AGG - chr7.2:83421036-83421055 MS.gene069422:CDS 25.0%
!!! TCACATTTTTTGACTTGATT+TGG - chr7.2:83420505-83420524 MS.gene069422:CDS 25.0%
!!! TCCAAAAATGGTTCTAATAA+AGG + chr7.2:83421035-83421054 None:intergenic 25.0%
!!! TCTAATAAAGGCTCTAAATT+TGG + chr7.2:83421023-83421042 None:intergenic 25.0%
!!! TTCAAACCATTTTTCATGAA+GGG - chr7.2:83421831-83421850 MS.gene069422:CDS 25.0%
!!! TTTCAAACCATTTTTCATGA+AGG - chr7.2:83421830-83421849 MS.gene069422:CDS 25.0%
AAACAATGTTACCAGCTAAA+GGG + chr7.2:83420662-83420681 None:intergenic 30.0%
ACAGAAAGTAAGGATTTGAA+AGG - chr7.2:83421761-83421780 MS.gene069422:CDS 30.0%
CAAAACAAAAGAGATGGATA+AGG - chr7.2:83421559-83421578 MS.gene069422:CDS 30.0%
CAATTCAATCCAAATGATGA+CGG - chr7.2:83420711-83420730 MS.gene069422:CDS 30.0%
GAGATTACTTCAATTGATAG+AGG - chr7.2:83421722-83421741 MS.gene069422:CDS 30.0%
TAGAAGAAAATACGTTCTAC+TGG + chr7.2:83420543-83420562 None:intergenic 30.0%
TATATAGCTATGATTGGTGA+AGG - chr7.2:83421617-83421636 MS.gene069422:CDS 30.0%
TCAAGTCAAAAAATGTGAGA+AGG + chr7.2:83420503-83420522 None:intergenic 30.0%
TGGAACAACAATATTGAAGA+AGG - chr7.2:83421263-83421282 MS.gene069422:CDS 30.0%
TTTGGATTGAATTGGATGAA+TGG + chr7.2:83420705-83420724 None:intergenic 30.0%
! ATAACCCTTTTTCCGAAAAA+TGG - chr7.2:83420885-83420904 MS.gene069422:CDS 30.0%
! GCCTTTATTAGAACCATTTT+TGG - chr7.2:83421031-83421050 MS.gene069422:CDS 30.0%
! TGTTTCCTTCGATCAAATTT+TGG - chr7.2:83420770-83420789 MS.gene069422:CDS 30.0%
! TTGAATTGGATGAATGGTTT+TGG + chr7.2:83420699-83420718 None:intergenic 30.0%
!! AATTGGTTTGACAGAAAGTA+AGG - chr7.2:83421751-83421770 MS.gene069422:CDS 30.0%
!! CCAATGGAAAAACCATTTTT+CGG + chr7.2:83420900-83420919 None:intergenic 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7.2:83421677-83421696 MS.gene069422:CDS 30.0%
!!! AGATTGATTTTGGTTTTGGA+AGG - chr7.2:83421687-83421706 MS.gene069422:CDS 30.0%
!!! ATTTTCTTTTGGTTTTCCTG+TGG - chr7.2:83421400-83421419 MS.gene069422:CDS 30.0%
!!! TTTCTGCTTTTTATCGCTTT+CGG + chr7.2:83421381-83421400 None:intergenic 30.0%
AGCACATGTAAGAACAAAAG+TGG + chr7.2:83421321-83421340 None:intergenic 35.0%
ATGACTTCCCTTTCCAAAAA+TGG + chr7.2:83421047-83421066 None:intergenic 35.0%
ATGATTGGTGAAGGAGTTAA+AGG - chr7.2:83421626-83421645 MS.gene069422:CDS 35.0%
CAAACAATGTTACCAGCTAA+AGG + chr7.2:83420663-83420682 None:intergenic 35.0%
CGTCATCATTTGGATTGAAT+TGG + chr7.2:83420713-83420732 None:intergenic 35.0%
CTTTAGCTGGTAACATTGTT+TGG - chr7.2:83420661-83420680 MS.gene069422:CDS 35.0%
GAATCTGATGATTCTAAGTG+AGG + chr7.2:83420840-83420859 None:intergenic 35.0%
GAGAAACTTTGCATTGTTCA+TGG + chr7.2:83420455-83420474 None:intergenic 35.0%
TGCATTTCAACCAATCGTTA+AGG - chr7.2:83421169-83421188 MS.gene069422:CDS 35.0%
TGTTCTTGATAAGCATGTGA+TGG - chr7.2:83421802-83421821 MS.gene069422:CDS 35.0%
TGTTTCCGTTTGTATAGCAA+AGG - chr7.2:83421343-83421362 MS.gene069422:CDS 35.0%
TTAAAGGAATAGGAGTTGCA+GGG - chr7.2:83421642-83421661 MS.gene069422:CDS 35.0%
! ATAACAGGGTGTTATCCAAA+TGG - chr7.2:83421243-83421262 MS.gene069422:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+TGG - chr7.2:83421572-83421591 MS.gene069422:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.2:83420935-83420954 None:intergenic 35.0%
! CCGAAAAATGGTTTTTCCAT+TGG - chr7.2:83420897-83420916 MS.gene069422:CDS 35.0%
! TTTTATCGCTTTCGGATTGT+TGG + chr7.2:83421373-83421392 None:intergenic 35.0%
!! GAGAGAGAAGATTTGAGTTT+TGG + chr7.2:83420618-83420637 None:intergenic 35.0%
!! GATAGTTGGGTTGAAGAATT+AGG + chr7.2:83420477-83420496 None:intergenic 35.0%
!!! AATGGTTTTGGAGAATCAGA+AGG + chr7.2:83420687-83420706 None:intergenic 35.0%
AAGGAAACTCCGTCATCATT+TGG + chr7.2:83420723-83420742 None:intergenic 40.0%
AATCTTGATCTGCAATCCAC+AGG + chr7.2:83421419-83421438 None:intergenic 40.0%
ACAAAAGTGGACAGCTTCTT+AGG + chr7.2:83421308-83421327 None:intergenic 40.0%
AGACCATGCTTTGATGAACA+TGG + chr7.2:83420964-83420983 None:intergenic 40.0%
ATGGTGTGTGCTTATTCCAA+TGG + chr7.2:83420916-83420935 None:intergenic 40.0%
ATGTGAGAAGGAGAGATAGT+TGG + chr7.2:83420491-83420510 None:intergenic 40.0%
CAACCATGTTCATCAAAGCA+TGG - chr7.2:83420958-83420977 MS.gene069422:CDS 40.0%
CGAACTGAATCCTTAACGAT+TGG + chr7.2:83421182-83421201 None:intergenic 40.0%
GGTGAAGGAGTTAAAGGAAT+AGG - chr7.2:83421632-83421651 MS.gene069422:CDS 40.0%
GTGCTCCAAAATTTGATCGA+AGG + chr7.2:83420778-83420797 None:intergenic 40.0%
GTTAAAGGAATAGGAGTTGC+AGG - chr7.2:83421641-83421660 MS.gene069422:CDS 40.0%
TAGGGTGTGAATGTGAACTT+GGG + chr7.2:83420572-83420591 None:intergenic 40.0%
TGTGAGAAGGAGAGATAGTT+GGG + chr7.2:83420490-83420509 None:intergenic 40.0%
! GATCGCCTTTGCTATACAAA+CGG + chr7.2:83421351-83421370 None:intergenic 40.0%
!! GAAGTAATCTCCACTTTTGC+AGG + chr7.2:83421713-83421732 None:intergenic 40.0%
ACACACCATGCTGTTCTTGA+TGG - chr7.2:83420927-83420946 MS.gene069422:CDS 45.0%
CAATGTTACCAGCTAAAGGG+AGG + chr7.2:83420659-83420678 None:intergenic 45.0%
CGAGACAAAGAAGCTTCTTG+TGG + chr7.2:83420807-83420826 None:intergenic 45.0%
GTAGGGTGTGAATGTGAACT+TGG + chr7.2:83420573-83420592 None:intergenic 45.0%
GTCACATTGTGCTAAGAGCA+AGG + chr7.2:83420742-83420761 None:intergenic 45.0%
GTGTGAATGTGAACTTGGGA+GGG + chr7.2:83420568-83420587 None:intergenic 45.0%
!! TTTTGGAAGGCCTGCAAAAG+TGG - chr7.2:83421700-83421719 MS.gene069422:CDS 45.0%
CAACACTTCCTCCCTTTAGC+TGG - chr7.2:83420648-83420667 MS.gene069422:CDS 50.0%
GGTGTGAATGTGAACTTGGG+AGG + chr7.2:83420569-83420588 None:intergenic 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7.2:83421656-83421675 MS.gene069422:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7.2:83421651-83421670 MS.gene069422:CDS 50.0%
! CAGCTAAAGGGAGGAAGTGT+TGG + chr7.2:83420650-83420669 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 83420423 83421871 83420423 ID=MS.gene069422
chr7.2 mRNA 83420423 83421871 83420423 ID=MS.gene069422.t1;Parent=MS.gene069422
chr7.2 exon 83420423 83421871 83420423 ID=MS.gene069422.t1.exon1;Parent=MS.gene069422.t1
chr7.2 CDS 83420423 83421871 83420423 ID=cds.MS.gene069422.t1;Parent=MS.gene069422.t1
Gene Sequence

>MS.gene069422

ATGGCTTCTCTAAACAAACACATCAAAATCCATGAACAATGCAAAGTTTCTCCTAATTCTTCAACCCAACTATCTCTCCTTCTCACATTTTTTGACTTGATTTGGCTAAGATTTCATCCAGTAGAACGTATTTTCTTCTACACCCTCCCAAGTTCACATTCACACCCTACTTTTTTCTTTGAAAATCTTGTTCCAAAACTCAAATCTTCTCTCTCTTTAACTCTCCAACACTTCCTCCCTTTAGCTGGTAACATTGTTTGGCCTTCTGATTCTCCAAAACCATTCATCCAATTCAATCCAAATGATGACGGAGTTTCCTTGCTCTTAGCACAATGTGACGACGATGATGTTTCCTTCGATCAAATTTTGGAGCACAATTCACCACAAGAAGCTTCTTTGTCTCGTTCTTTTGTACCTCACTTAGAATCATCAGATTCTTTTGCTTCTATTATTTCAATTCAGATAACCCTTTTTCCGAAAAATGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATGTGTAAATCTCTTGAAGAAGAAACACAATCACCAAATTTAGAGCCTTTATTAGAACCATTTTTGGAAAGGGAAGTCATCAAAGATCCAAATGATTTTGAGAATTCGTTCATTAATACTTGGAACAGTATCTCATCACATTTTGATAAGAGCAATGTGAGAAGCATACAAATTATGTCAAATGCATTTCAACCAATCGTTAAGGATTCAGTTCGAGTAACTTTCGAGCTAACACGCGAAGATTTGATGAAAATAAATAACAGGGTGTTATCCAAATGGAACAACAATATTGAAGAAGGATCACAAGAACAAGAACAACCTAAGAAGCTGTCCACTTTTGTTCTTACATGTGCTTATGTTTCCGTTTGTATAGCAAAGGCGATCCAACAATCCGAAAGCGATAAAAAGCAGAAATTTTCTTTTGGTTTTCCTGTGGATTGCAGATCAAGATTTGATCCACCAATTCCTAAAAATTATTTTGGAAATTGTGTATCTAATCATATAATTGATACTGAGCCATATGACTTTACAAAAGAAGATGGAGTTGTGATTGTTGCTAAGAAAATTTATGTCAAAACAAAAGAGATGGATAAGGGTTTTCTTGATGGAATAGAGACATTGACGTATAGATATATAGCTATGATTGGTGAAGGAGTTAAAGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGCAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACAATTGGTTTGACAGAAAGTAAGGATTTGAAAGGTAGTATTGAATTTGGACTTGTTCTTGATAAGCATGTGATGGATTTGTTTCAAACCATTTTTCATGAAGGGTTATTATGTTTTGATTGA
Protein sequence

>MS.gene069422.t1

MASLNKHIKIHEQCKVSPNSSTQLSLLLTFFDLIWLRFHPVERIFFYTLPSSHSHPTFFFENLVPKLKSSLSLTLQHFLPLAGNIVWPSDSPKPFIQFNPNDDGVSLLLAQCDDDDVSFDQILEHNSPQEASLSRSFVPHLESSDSFASIISIQITLFPKNGFSIGISTHHAVLDGKSSTMFIKAWSSMCKSLEEETQSPNLEPLLEPFLEREVIKDPNDFENSFINTWNSISSHFDKSNVRSIQIMSNAFQPIVKDSVRVTFELTREDLMKINNRVLSKWNNNIEEGSQEQEQPKKLSTFVLTCAYVSVCIAKAIQQSESDKKQKFSFGFPVDCRSRFDPPIPKNYFGNCVSNHIIDTEPYDFTKEDGVVIVAKKIYVKTKEMDKGFLDGIETLTYRYIAMIGEGVKGIGVAGSTRFGVYEIDFGFGRPAKVEITSIDRGLTIGLTESKDLKGSIEFGLVLDKHVMDLFQTIFHEGLLCFD