AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44630.t1 MTR_7g013850 89.278 485 47 4 1 482 1 483 0.0 868
MS.gene44630.t1 MTR_7g014200 61.795 479 162 10 5 478 6 468 0.0 563
MS.gene44630.t1 MTR_7g014160 58.455 479 183 10 5 478 6 473 0.0 545
MS.gene44630.t1 MTR_7g014610 59.794 485 178 11 1 478 1 475 0.0 535
MS.gene44630.t1 MTR_7g014620 54.860 463 169 10 20 478 6 432 1.25e-158 457
MS.gene44630.t1 MTR_7g014630 60.839 286 101 7 1 281 1 280 4.19e-112 336
MS.gene44630.t1 MTR_6g015315 38.854 471 263 9 9 478 6 452 1.04e-102 315
MS.gene44630.t1 MTR_6g015320 37.967 482 267 10 1 478 1 454 4.76e-101 310
MS.gene44630.t1 MTR_6g015830 40.289 484 243 14 9 478 9 460 4.13e-100 308
MS.gene44630.t1 MTR_7g014330 39.004 482 254 14 9 478 3 456 5.54e-100 308
MS.gene44630.t1 MTR_6g015850 40.000 490 249 16 1 478 1 457 6.69e-100 308
MS.gene44630.t1 MTR_7g014230 38.750 480 256 13 9 477 5 457 1.58e-99 307
MS.gene44630.t1 MTR_7g014250 37.759 482 260 13 9 478 3 456 2.97e-97 301
MS.gene44630.t1 MTR_6g015815 40.043 467 240 13 20 478 26 460 5.95e-97 300
MS.gene44630.t1 MTR_3g028210 34.286 490 284 12 1 478 1 464 2.31e-75 244
MS.gene44630.t1 MTR_7g014180 68.156 179 50 5 1 178 1 173 2.81e-72 226
MS.gene44630.t1 MTR_7g014670 58.421 190 77 2 290 478 71 259 3.61e-70 224
MS.gene44630.t1 MTR_7g014360 32.843 408 227 10 76 478 21 386 3.14e-67 221
MS.gene44630.t1 MTR_2g089765 32.114 492 280 16 11 478 21 482 1.21e-66 222
MS.gene44630.t1 MTR_2g089670 32.473 465 268 17 28 478 45 477 1.84e-58 200
MS.gene44630.t1 MTR_2g089650 29.839 496 297 15 1 478 1 463 3.02e-57 197
MS.gene44630.t1 MTR_7g015860 30.600 500 274 16 4 474 1 456 4.47e-57 196
MS.gene44630.t1 MTR_2g089755 30.472 466 282 12 28 478 37 475 2.87e-56 194
MS.gene44630.t1 MTR_2g089735 31.042 451 270 12 41 478 39 461 2.44e-55 192
MS.gene44630.t1 MTR_3g087640 29.741 501 289 12 9 481 10 475 7.03e-54 188
MS.gene44630.t1 MTR_8g012750 30.162 494 294 19 8 476 3 470 3.36e-53 186
MS.gene44630.t1 MTR_6g015310 30.203 394 203 9 63 456 12 333 4.40e-49 171
MS.gene44630.t1 MTR_7g014310 28.060 335 169 7 130 461 41 306 4.75e-36 135
MS.gene44630.t1 MTR_2g089665 26.813 455 191 16 11 451 7 333 2.65e-27 112
MS.gene44630.t1 MTR_3g435300 32.618 233 131 8 9 229 4 222 2.81e-24 102
MS.gene44630.t1 MTR_7g085930 23.984 492 317 18 8 478 6 461 1.00e-20 95.1
MS.gene44630.t1 MTR_4g007540 23.935 493 288 23 8 476 3 432 1.23e-20 94.4
MS.gene44630.t1 MTR_8g075610 24.198 405 229 18 44 430 30 374 8.37e-20 92.0
MS.gene44630.t1 MTR_7g086000 23.214 448 278 16 7 430 3 408 3.78e-19 90.1
MS.gene44630.t1 MTR_6g045553 23.353 501 306 20 3 471 11 465 6.87e-19 89.7
MS.gene44630.t1 MTR_2g064495 23.926 489 292 22 8 476 3 431 1.89e-18 87.8
MS.gene44630.t1 MTR_3g070170 25.054 459 264 19 8 434 12 422 1.94e-18 88.2
MS.gene44630.t1 MTR_2g105330 23.926 489 292 22 8 476 3 431 8.86e-18 85.9
MS.gene44630.t1 MTR_5g081960 22.887 485 329 16 13 471 11 476 1.49e-16 82.4
MS.gene44630.t1 MTR_3g049150 24.096 498 299 25 8 478 2 447 5.70e-16 80.5
MS.gene44630.t1 MTR_4g094838 24.138 435 255 13 19 440 19 391 1.37e-15 79.3
MS.gene44630.t1 MTR_3g101960 23.953 430 248 17 28 434 29 402 1.78e-15 79.0
MS.gene44630.t1 MTR_7g014205 32.258 124 72 2 318 440 2 114 2.55e-15 72.8
MS.gene44630.t1 MTR_7g014210 35.514 107 67 2 336 440 24 130 5.15e-15 73.2
MS.gene44630.t1 MTR_4g094828 21.458 480 285 18 19 468 20 437 1.38e-14 76.3
MS.gene44630.t1 MTR_3g098980 23.936 376 221 15 67 430 66 388 1.52e-14 75.9
MS.gene44630.t1 MTR_4g094842 22.611 429 260 15 62 468 57 435 5.05e-14 74.3
MS.gene44630.t1 MTR_4g022800 23.207 474 284 19 17 468 14 429 5.74e-14 74.3
MS.gene44630.t1 MTR_8g467580 24.299 428 253 16 17 430 15 385 6.12e-14 74.3
MS.gene44630.t1 MTR_3g026310 22.026 454 270 16 17 442 14 411 2.16e-13 72.4
MS.gene44630.t1 MTR_7g014340 54.930 71 25 2 9 75 3 70 6.59e-13 65.1
MS.gene44630.t1 MTR_7g026860 23.679 473 282 19 16 468 12 425 1.05e-12 70.1
MS.gene44630.t1 MTR_7g084940 21.918 438 274 17 4 430 12 392 3.15e-12 68.9
MS.gene44630.t1 MTR_7g014220 57.143 56 21 1 22 77 12 64 2.09e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44630.t1 AT5G39080 39.413 477 257 14 8 475 5 458 1.71e-93 291
MS.gene44630.t1 AT3G29590 37.372 487 257 10 1 478 1 448 6.87e-91 284
MS.gene44630.t1 AT5G39050 38.900 491 255 16 4 478 6 467 1.01e-89 282
MS.gene44630.t1 AT5G39090 36.875 480 265 12 4 478 1 447 5.87e-87 274
MS.gene44630.t1 AT3G29635 36.192 478 272 11 8 478 3 454 1.19e-83 266
MS.gene44630.t1 AT3G29670 37.347 490 245 16 8 478 3 449 6.21e-83 264
MS.gene44630.t1 AT3G29680 35.565 478 257 14 8 474 6 443 9.29e-73 237
MS.gene44630.t1 AT1G03940 31.653 496 279 15 9 481 9 467 1.40e-68 227
MS.gene44630.t1 AT5G61160 31.447 477 288 12 8 476 3 448 1.64e-68 226
MS.gene44630.t1 AT1G03495 32.796 372 208 14 1 360 1 342 1.89e-44 159
MS.gene44630.t1 AT5G23940 25.615 488 285 21 8 468 3 439 6.95e-23 101
MS.gene44630.t1 AT2G19070 22.467 454 293 14 41 476 37 449 3.83e-21 96.3
MS.gene44630.t1 AT3G50270 25.532 470 289 15 16 469 17 441 4.21e-18 87.0
MS.gene44630.t1 AT3G29720 33.032 221 104 10 99 304 10 201 1.05e-17 82.4
MS.gene44630.t1 AT2G39980 22.727 484 339 14 1 467 1 466 2.93e-17 84.7
MS.gene44630.t1 AT5G57840 22.857 490 305 16 8 478 3 438 1.88e-16 82.0
MS.gene44630.t1 AT5G41040 24.590 427 258 20 61 474 63 438 6.17e-16 80.5
MS.gene44630.t1 AT5G41040 24.590 427 258 20 61 474 79 454 1.09e-15 79.7
MS.gene44630.t1 AT3G29690 30.719 153 96 3 329 478 33 178 8.33e-15 73.2
MS.gene44630.t1 AT3G50280 23.113 424 273 14 19 434 18 396 1.11e-14 76.6
MS.gene44630.t1 AT5G07850 24.169 451 279 18 1 434 1 405 4.18e-14 74.7
MS.gene44630.t1 AT1G28680 22.772 404 243 17 45 433 40 389 9.50e-14 73.6
MS.gene44630.t1 AT3G50300 26.178 382 230 16 64 434 56 396 2.23e-13 72.4
MS.gene44630.t1 AT3G48720 22.356 416 267 13 67 474 61 428 3.64e-13 71.6
MS.gene44630.t1 AT1G28680 21.865 311 199 9 45 352 40 309 2.10e-12 69.3

Find 64 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTTGGGTTGAAGAATT+AGG 0.162139 7.3:+83670929 None:intergenic
TCTAATAAAGGCTCTAAATT+TGG 0.169522 7.3:+83670383 None:intergenic
TGTTTCCTTCGATCAAATTT+TGG 0.183599 7.3:-83670633 MS.gene44630:CDS
TTGAAAGGTAGTATTGAATT+TGG 0.208629 7.3:-83669627 MS.gene44630:CDS
TTTGGATTGAATTGGATTAA+TGG 0.211797 7.3:+83670701 None:intergenic
TTGAATTGGATTAATGGTTT+TGG 0.231343 7.3:+83670707 None:intergenic
TTCAATATTGTTGTTCCATT+TGG 0.246981 7.3:+83670145 None:intergenic
GAGAGCGAAGATTTGAGTTT+TGG 0.251282 7.3:+83670788 None:intergenic
ACAAAAGTGGACAGCTTCTT+AGG 0.251396 7.3:+83670098 None:intergenic
CGTCATCATTTGGATTGAAT+TGG 0.258288 7.3:+83670693 None:intergenic
GGAGTATATGAGATTGATTT+TGG 0.276059 7.3:-83669726 MS.gene44630:CDS
ATGATTGGTGAAGGAGTTAA+AGG 0.329186 7.3:-83669777 MS.gene44630:CDS
AACGAATTCTCAAAATCATT+TGG 0.329734 7.3:+83670329 None:intergenic
GAGAAACTTTGCATTGTTCA+TGG 0.331192 7.3:+83670951 None:intergenic
ATTTGATGAAAATAAATAAC+AGG 0.346339 7.3:-83670175 MS.gene44630:CDS
CTTTAGCTGGTAACATCGTT+TGG 0.362068 7.3:-83670742 MS.gene44630:CDS
GTTAAAGGAATAGGAGTTGC+AGG 0.381644 7.3:-83669762 MS.gene44630:CDS
AATTGGTTTGACAGAAAGTA+AGG 0.387323 7.3:-83669652 MS.gene44630:CDS
AAGGAAACTCCGTCATCATT+TGG 0.395044 7.3:+83670683 None:intergenic
GGTGAAGGAGTTAAAGGAAT+AGG 0.395384 7.3:-83669771 MS.gene44630:CDS
TGCATTTCAACCAATCGTTA+AGG 0.404523 7.3:-83670234 MS.gene44630:CDS
TGTGAGAAGGAGAGATAGTT+GGG 0.418473 7.3:+83670916 None:intergenic
ACACACCATGCTGTTCTTGA+TGG 0.421878 7.3:-83670476 MS.gene44630:CDS
ATTGATAGAGGATTAACAAT+TGG 0.431776 7.3:-83669669 MS.gene44630:CDS
TAGAAGAAAATACGTTCTAC+TGG 0.445325 7.3:+83670863 None:intergenic
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7.3:-83669747 MS.gene44630:CDS
AGAATTCGTTCATTAATACT+TGG 0.456841 7.3:-83670316 MS.gene44630:CDS
GAGATTACTTCAATTGATAG+AGG 0.456941 7.3:-83669681 MS.gene44630:CDS
CAACACTTCCTCCCTTTAGC+TGG 0.464034 7.3:-83670755 MS.gene44630:CDS
CAGCTAAAGGGAGGAAGTGT+TGG 0.471757 7.3:+83670756 None:intergenic
ATGTGAGAAGGAGAGATAGT+TGG 0.473667 7.3:+83670915 None:intergenic
CAAAACAAAAGAGATGGATA+AGG 0.478383 7.3:-83669844 MS.gene44630:CDS
TATAGATATATAGCTATGAT+TGG 0.488633 7.3:-83669792 MS.gene44630:CDS
AGCACATGTAAGAACAAAAG+TGG 0.494080 7.3:+83670085 None:intergenic
ATAACAGGGTGTTATCCAAA+TGG 0.497827 7.3:-83670160 MS.gene44630:CDS
CAAACGATGTTACCAGCTAA+AGG 0.503485 7.3:+83670743 None:intergenic
TATGACTTTACAAAAGAAGA+TGG 0.504011 7.3:-83669897 MS.gene44630:CDS
AAAACAAAAGAGATGGATAA+GGG 0.505500 7.3:-83669843 MS.gene44630:CDS
GATCGCCTTTGCTATACAAA+CGG 0.514173 7.3:+83670055 None:intergenic
AAACGATGTTACCAGCTAAA+GGG 0.515290 7.3:+83670744 None:intergenic
TGGAACAACAATATTGAAGA+AGG 0.519341 7.3:-83670140 MS.gene44630:CDS
ACAGAAAGTAAGGATTTGAA+AGG 0.525092 7.3:-83669642 MS.gene44630:CDS
GTGCTCCAAAATTTGATCGA+AGG 0.536336 7.3:+83670628 None:intergenic
CGAACTGAATCCTTAACGAT+TGG 0.540576 7.3:+83670224 None:intergenic
GTAGGGTGTGAATGTGAACT+TGG 0.545769 7.3:+83670833 None:intergenic
TGTTCTTGATAAGCATGTGA+TGG 0.547164 7.3:-83669601 MS.gene44630:CDS
TGTTTCCGTTTGTATAGCAA+AGG 0.550669 7.3:-83670060 MS.gene44630:CDS
AATCTTGATCTGCAATCCAC+AGG 0.563131 7.3:+83669987 None:intergenic
TATATAGCTATGATTGGTGA+AGG 0.570710 7.3:-83669786 MS.gene44630:CDS
TTATGTCAAAACAAAAGAGA+TGG 0.571134 7.3:-83669850 MS.gene44630:CDS
GTGTGAATGTGAACTTGGGA+GGG 0.578151 7.3:+83670838 None:intergenic
GAATCTGATGATTCTAAGTG+AGG 0.596592 7.3:+83670566 None:intergenic
CAATTCAATCCAAATGATGA+CGG 0.601071 7.3:-83670692 MS.gene44630:CDS
GGTGTGAATGTGAACTTGGG+AGG 0.617310 7.3:+83670837 None:intergenic
GTCACATTGTGCTAAGAGCA+AGG 0.618079 7.3:+83670664 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7.3:-83669752 MS.gene44630:CDS
CAACCATGTTCATCAAAGCA+TGG 0.631200 7.3:-83670445 MS.gene44630:CDS
ATGGTGTGTGCTTATTCCAA+TGG 0.644576 7.3:+83670490 None:intergenic
CGAGACAAAGAAGCTTCTTG+TGG 0.646679 7.3:+83670599 None:intergenic
TTTGATGAAAATAAATAACA+GGG 0.650830 7.3:-83670174 MS.gene44630:CDS
TAGGGTGTGAATGTGAACTT+GGG 0.653813 7.3:+83670834 None:intergenic
AGACCATGCTTTGATGAACA+TGG 0.653845 7.3:+83670442 None:intergenic
CGATGTTACCAGCTAAAGGG+AGG 0.666686 7.3:+83670747 None:intergenic
TTAAAGGAATAGGAGTTGCA+GGG 0.673383 7.3:-83669761 MS.gene44630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGATGAAAATAAATAAC+AGG - chr7.3:83670359-83670378 MS.gene44630:CDS 15.0%
!! TTTGATGAAAATAAATAACA+GGG - chr7.3:83670360-83670379 MS.gene44630:CDS 15.0%
!!! CAATTTCCAAAATAATTTTT+AGG + chr7.3:83670586-83670605 None:intergenic 15.0%
!! TATAGATATATAGCTATGAT+TGG - chr7.3:83670742-83670761 MS.gene44630:CDS 20.0%
!!! AAAAAGCAGAAATTTTCTTT+TGG - chr7.3:83670520-83670539 MS.gene44630:CDS 20.0%
!!! AAATAATTTTTAGGAATTGG+TGG + chr7.3:83670577-83670596 None:intergenic 20.0%
!!! AGATTTTCAAAGAAAAAAGT+AGG + chr7.3:83669722-83669741 None:intergenic 20.0%
!!! CCAAAATAATTTTTAGGAAT+TGG + chr7.3:83670580-83670599 None:intergenic 20.0%
!!! CCAATTCCTAAAAATTATTT+TGG - chr7.3:83670577-83670596 MS.gene44630:CDS 20.0%
!!! GATTTTCAAAGAAAAAAGTA+GGG + chr7.3:83669721-83669740 None:intergenic 20.0%
! AAAACAAAAGAGATGGATAA+GGG - chr7.3:83670691-83670710 MS.gene44630:CDS 25.0%
! AACGAATTCTCAAAATCATT+TGG + chr7.3:83670208-83670227 None:intergenic 25.0%
! AGAATTCGTTCATTAATACT+TGG - chr7.3:83670218-83670237 MS.gene44630:CDS 25.0%
! ATTGATAGAGGATTAACAAT+TGG - chr7.3:83670865-83670884 MS.gene44630:CDS 25.0%
! TAATAACCCTTCATGAAAAA+TGG + chr7.3:83670971-83670990 None:intergenic 25.0%
! TATGACTTTACAAAAGAAGA+TGG - chr7.3:83670637-83670656 MS.gene44630:CDS 25.0%
! TTATGTCAAAACAAAAGAGA+TGG - chr7.3:83670684-83670703 MS.gene44630:CDS 25.0%
! TTTGGATTGAATTGGATTAA+TGG + chr7.3:83669836-83669855 None:intergenic 25.0%
!! TCTTCTTTTGTAAAGTCATA+TGG + chr7.3:83670637-83670656 None:intergenic 25.0%
!! TGAATTGGATTAATGGTTTT+GGG + chr7.3:83669829-83669848 None:intergenic 25.0%
!! TTCAATATTGTTGTTCCATT+TGG + chr7.3:83670392-83670411 None:intergenic 25.0%
!! TTGAAAGGTAGTATTGAATT+TGG - chr7.3:83670907-83670926 MS.gene44630:CDS 25.0%
!! TTGAATTGGATTAATGGTTT+TGG + chr7.3:83669830-83669849 None:intergenic 25.0%
!!! AAAAACCATTTTTCGGAAAA+AGG + chr7.3:83670024-83670043 None:intergenic 25.0%
!!! AAAACCATTTTTCGGAAAAA+GGG + chr7.3:83670023-83670042 None:intergenic 25.0%
!!! ATTAGAACCATTTTTGGAAA+GGG - chr7.3:83670168-83670187 MS.gene44630:CDS 25.0%
!!! TATGAGATTGATTTTGGTTT+TGG - chr7.3:83670814-83670833 MS.gene44630:CDS 25.0%
!!! TATTAGAACCATTTTTGGAA+AGG - chr7.3:83670167-83670186 MS.gene44630:CDS 25.0%
!!! TCACATTTTTTGACTTGATT+TGG - chr7.3:83669636-83669655 MS.gene44630:CDS 25.0%
!!! TCCAAAAATGGTTCTAATAA+AGG + chr7.3:83670166-83670185 None:intergenic 25.0%
!!! TCTAATAAAGGCTCTAAATT+TGG + chr7.3:83670154-83670173 None:intergenic 25.0%
!!! TTCAAACCATTTTTCATGAA+GGG - chr7.3:83670962-83670981 MS.gene44630:CDS 25.0%
!!! TTTCAAACCATTTTTCATGA+AGG - chr7.3:83670961-83670980 MS.gene44630:CDS 25.0%
ACAGAAAGTAAGGATTTGAA+AGG - chr7.3:83670892-83670911 MS.gene44630:CDS 30.0%
CAAAACAAAAGAGATGGATA+AGG - chr7.3:83670690-83670709 MS.gene44630:CDS 30.0%
CAATTCAATCCAAATGATGA+CGG - chr7.3:83669842-83669861 MS.gene44630:CDS 30.0%
GAGATTACTTCAATTGATAG+AGG - chr7.3:83670853-83670872 MS.gene44630:CDS 30.0%
TAGAAGAAAATACGTTCTAC+TGG + chr7.3:83669674-83669693 None:intergenic 30.0%
TATATAGCTATGATTGGTGA+AGG - chr7.3:83670748-83670767 MS.gene44630:CDS 30.0%
TCAAGTCAAAAAATGTGAGA+AGG + chr7.3:83669634-83669653 None:intergenic 30.0%
TGGAACAACAATATTGAAGA+AGG - chr7.3:83670394-83670413 MS.gene44630:CDS 30.0%
! ATAACCCTTTTTCCGAAAAA+TGG - chr7.3:83670016-83670035 MS.gene44630:CDS 30.0%
! GCCTTTATTAGAACCATTTT+TGG - chr7.3:83670162-83670181 MS.gene44630:CDS 30.0%
! TGTTTCCTTCGATCAAATTT+TGG - chr7.3:83669901-83669920 MS.gene44630:CDS 30.0%
!! AATTGGTTTGACAGAAAGTA+AGG - chr7.3:83670882-83670901 MS.gene44630:CDS 30.0%
!! CCAATGGAAAAACCATTTTT+CGG + chr7.3:83670031-83670050 None:intergenic 30.0%
!! GAATTGGATTAATGGTTTTG+GGG + chr7.3:83669828-83669847 None:intergenic 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7.3:83670808-83670827 MS.gene44630:CDS 30.0%
!!! AGATTGATTTTGGTTTTGGA+AGG - chr7.3:83670818-83670837 MS.gene44630:CDS 30.0%
!!! ATTTTCTTTTGGTTTTCCTG+TGG - chr7.3:83670531-83670550 MS.gene44630:CDS 30.0%
!!! TTTCTGCTTTTTATCGCTTT+CGG + chr7.3:83670512-83670531 None:intergenic 30.0%
AAACGATGTTACCAGCTAAA+GGG + chr7.3:83669793-83669812 None:intergenic 35.0%
AGCACATGTAAGAACAAAAG+TGG + chr7.3:83670452-83670471 None:intergenic 35.0%
ATGACTTCCCTTTCCAAAAA+TGG + chr7.3:83670178-83670197 None:intergenic 35.0%
ATGATTGGTGAAGGAGTTAA+AGG - chr7.3:83670757-83670776 MS.gene44630:CDS 35.0%
CGTCATCATTTGGATTGAAT+TGG + chr7.3:83669844-83669863 None:intergenic 35.0%
GAATCTGATGATTCTAAGTG+AGG + chr7.3:83669971-83669990 None:intergenic 35.0%
GAGAAACTTTGCATTGTTCA+TGG + chr7.3:83669586-83669605 None:intergenic 35.0%
TGCATTTCAACCAATCGTTA+AGG - chr7.3:83670300-83670319 MS.gene44630:CDS 35.0%
TGTTCTTGATAAGCATGTGA+TGG - chr7.3:83670933-83670952 MS.gene44630:CDS 35.0%
TGTTTCCGTTTGTATAGCAA+AGG - chr7.3:83670474-83670493 MS.gene44630:CDS 35.0%
TTAAAGGAATAGGAGTTGCA+GGG - chr7.3:83670773-83670792 MS.gene44630:CDS 35.0%
! ATAACAGGGTGTTATCCAAA+TGG - chr7.3:83670374-83670393 MS.gene44630:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+TGG - chr7.3:83670703-83670722 MS.gene44630:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.3:83670066-83670085 None:intergenic 35.0%
! CCGAAAAATGGTTTTTCCAT+TGG - chr7.3:83670028-83670047 MS.gene44630:CDS 35.0%
! TTTTATCGCTTTCGGATTGT+TGG + chr7.3:83670504-83670523 None:intergenic 35.0%
!! GATAGTTGGGTTGAAGAATT+AGG + chr7.3:83669608-83669627 None:intergenic 35.0%
AAGGAAACTCCGTCATCATT+TGG + chr7.3:83669854-83669873 None:intergenic 40.0%
AATCTTGATCTGCAATCCAC+AGG + chr7.3:83670550-83670569 None:intergenic 40.0%
ACAAAAGTGGACAGCTTCTT+AGG + chr7.3:83670439-83670458 None:intergenic 40.0%
AGACCATGCTTTGATGAACA+TGG + chr7.3:83670095-83670114 None:intergenic 40.0%
ATGGTGTGTGCTTATTCCAA+TGG + chr7.3:83670047-83670066 None:intergenic 40.0%
ATGTGAGAAGGAGAGATAGT+TGG + chr7.3:83669622-83669641 None:intergenic 40.0%
CAAACGATGTTACCAGCTAA+AGG + chr7.3:83669794-83669813 None:intergenic 40.0%
CAACCATGTTCATCAAAGCA+TGG - chr7.3:83670089-83670108 MS.gene44630:CDS 40.0%
CGAACTGAATCCTTAACGAT+TGG + chr7.3:83670313-83670332 None:intergenic 40.0%
CTTTAGCTGGTAACATCGTT+TGG - chr7.3:83669792-83669811 MS.gene44630:CDS 40.0%
GGTGAAGGAGTTAAAGGAAT+AGG - chr7.3:83670763-83670782 MS.gene44630:CDS 40.0%
GTGCTCCAAAATTTGATCGA+AGG + chr7.3:83669909-83669928 None:intergenic 40.0%
GTTAAAGGAATAGGAGTTGC+AGG - chr7.3:83670772-83670791 MS.gene44630:CDS 40.0%
TAGGGTGTGAATGTGAACTT+GGG + chr7.3:83669703-83669722 None:intergenic 40.0%
TGTGAGAAGGAGAGATAGTT+GGG + chr7.3:83669621-83669640 None:intergenic 40.0%
! GATCGCCTTTGCTATACAAA+CGG + chr7.3:83670482-83670501 None:intergenic 40.0%
!! GAAGTAATCTCCACTTTTGC+AGG + chr7.3:83670844-83670863 None:intergenic 40.0%
!! GAGAGCGAAGATTTGAGTTT+TGG + chr7.3:83669749-83669768 None:intergenic 40.0%
!!! AATGGTTTTGGGGAATCAGA+AGG + chr7.3:83669818-83669837 None:intergenic 40.0%
ACACACCATGCTGTTCTTGA+TGG - chr7.3:83670058-83670077 MS.gene44630:CDS 45.0%
CGAGACAAAGAAGCTTCTTG+TGG + chr7.3:83669938-83669957 None:intergenic 45.0%
GTAGGGTGTGAATGTGAACT+TGG + chr7.3:83669704-83669723 None:intergenic 45.0%
GTCACATTGTGCTAAGAGCA+AGG + chr7.3:83669873-83669892 None:intergenic 45.0%
GTGTGAATGTGAACTTGGGA+GGG + chr7.3:83669699-83669718 None:intergenic 45.0%
!! TTTTGGAAGGCCTGCAAAAG+TGG - chr7.3:83670831-83670850 MS.gene44630:CDS 45.0%
CAACACTTCCTCCCTTTAGC+TGG - chr7.3:83669779-83669798 MS.gene44630:CDS 50.0%
CGATGTTACCAGCTAAAGGG+AGG + chr7.3:83669790-83669809 None:intergenic 50.0%
GGTGTGAATGTGAACTTGGG+AGG + chr7.3:83669700-83669719 None:intergenic 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7.3:83670787-83670806 MS.gene44630:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7.3:83670782-83670801 MS.gene44630:CDS 50.0%
! CAGCTAAAGGGAGGAAGTGT+TGG + chr7.3:83669781-83669800 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 83669554 83671002 83669554 ID=MS.gene44630
chr7.3 mRNA 83669554 83671002 83669554 ID=MS.gene44630.t1;Parent=MS.gene44630
chr7.3 exon 83669554 83671002 83669554 ID=MS.gene44630.t1.exon1;Parent=MS.gene44630.t1
chr7.3 CDS 83669554 83671002 83669554 ID=cds.MS.gene44630.t1;Parent=MS.gene44630.t1
Gene Sequence

>MS.gene44630

ATGGCTTCTCTAAACAAACACATCAAAATCCATGAACAATGCAAAGTTTCTCCTAATTCTTCAACCCAACTATCTCTCCTTCTCACATTTTTTGACTTGATTTGGCTAAGATTTCATCCAGTAGAACGTATTTTCTTCTACACCCTCCCAAGTTCACATTCACACCCTACTTTTTTCTTTGAAAATCTTGTTCCAAAACTCAAATCTTCGCTCTCTTTAACTCTCCAACACTTCCTCCCTTTAGCTGGTAACATCGTTTGGCCTTCTGATTCCCCAAAACCATTAATCCAATTCAATCCAAATGATGACGGAGTTTCCTTGCTCTTAGCACAATGTGACGACGATGATGTTTCCTTCGATCAAATTTTGGAGCACAATTCACCACAAGAAGCTTCTTTGTCTCGTTCTTTTGTACCTCACTTAGAATCATCAGATTCTTTTGCTTCTATTAGTTCAATTCAGATAACCCTTTTTCCGAAAAATGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATGTGTAAATCTCTTGAAGAAGAAACACAATCACCAAATTTAGAGCCTTTATTAGAACCATTTTTGGAAAGGGAAGTCATCAAAGATCCAAATGATTTTGAGAATTCGTTCATTAATACTTGGAACAGTATCTCATCACATTTTGATAAGAGCAATGTGAGAAGCATACAAATTATGTCAAATGCATTTCAACCAATCGTTAAGGATTCAGTTCGAGTAACTTTCGAGCTAACACGCGAAGATTTGATGAAAATAAATAACAGGGTGTTATCCAAATGGAACAACAATATTGAAGAAGGATCACAAGAACAAGAACAACCTAAGAAGCTGTCCACTTTTGTTCTTACATGTGCTTATGTTTCCGTTTGTATAGCAAAGGCGATCCAACAATCCGAAAGCGATAAAAAGCAGAAATTTTCTTTTGGTTTTCCTGTGGATTGCAGATCAAGATTTGATCCACCAATTCCTAAAAATTATTTTGGAAATTGTGTATCTAATCATATAATTGATACTGAGCCATATGACTTTACAAAAGAAGATGGAGTTGTGATTGTTGCTAAGAAAATTTATGTCAAAACAAAAGAGATGGATAAGGGTTTTCTTGATGGAATAGAGACATTGACGTATAGATATATAGCTATGATTGGTGAAGGAGTTAAAGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGCAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACAATTGGTTTGACAGAAAGTAAGGATTTGAAAGGTAGTATTGAATTTGGACTTGTTCTTGATAAGCATGTGATGGATTTGTTTCAAACCATTTTTCATGAAGGGTTATTATGTTTTGATTGA
Protein sequence

>MS.gene44630.t1

MASLNKHIKIHEQCKVSPNSSTQLSLLLTFFDLIWLRFHPVERIFFYTLPSSHSHPTFFFENLVPKLKSSLSLTLQHFLPLAGNIVWPSDSPKPLIQFNPNDDGVSLLLAQCDDDDVSFDQILEHNSPQEASLSRSFVPHLESSDSFASISSIQITLFPKNGFSIGISTHHAVLDGKSSTMFIKAWSSMCKSLEEETQSPNLEPLLEPFLEREVIKDPNDFENSFINTWNSISSHFDKSNVRSIQIMSNAFQPIVKDSVRVTFELTREDLMKINNRVLSKWNNNIEEGSQEQEQPKKLSTFVLTCAYVSVCIAKAIQQSESDKKQKFSFGFPVDCRSRFDPPIPKNYFGNCVSNHIIDTEPYDFTKEDGVVIVAKKIYVKTKEMDKGFLDGIETLTYRYIAMIGEGVKGIGVAGSTRFGVYEIDFGFGRPAKVEITSIDRGLTIGLTESKDLKGSIEFGLVLDKHVMDLFQTIFHEGLLCFD