AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91615

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91615.t1 MTR_7g013850 88.017 484 53 4 1 481 1 482 0.0 857
MS.gene91615.t1 MTR_7g014200 61.795 479 162 10 5 478 6 468 0.0 565
MS.gene91615.t1 MTR_7g014160 58.246 479 184 10 5 478 6 473 0.0 545
MS.gene91615.t1 MTR_7g014610 59.794 485 178 11 1 478 1 475 0.0 536
MS.gene91615.t1 MTR_7g014620 54.095 464 173 10 19 478 5 432 6.75e-158 455
MS.gene91615.t1 MTR_7g014630 60.490 286 102 7 1 281 1 280 4.24e-112 335
MS.gene91615.t1 MTR_6g015315 39.066 471 262 9 9 478 6 452 8.17e-105 320
MS.gene91615.t1 MTR_6g015320 39.212 482 261 11 1 478 1 454 9.16e-105 320
MS.gene91615.t1 MTR_7g014330 39.004 482 254 14 9 478 3 456 5.32e-103 315
MS.gene91615.t1 MTR_7g014230 38.750 480 256 13 9 477 5 457 2.44e-102 314
MS.gene91615.t1 MTR_6g015830 39.669 484 246 14 9 478 9 460 2.49e-100 309
MS.gene91615.t1 MTR_6g015850 39.388 490 252 16 1 478 1 457 4.49e-100 308
MS.gene91615.t1 MTR_7g014250 37.552 482 261 13 9 478 3 456 1.48e-98 304
MS.gene91615.t1 MTR_6g015815 39.286 476 246 14 11 478 20 460 3.84e-97 301
MS.gene91615.t1 MTR_3g028210 34.413 494 278 13 1 478 1 464 4.57e-76 246
MS.gene91615.t1 MTR_7g014670 58.947 190 76 2 290 478 71 259 4.75e-71 226
MS.gene91615.t1 MTR_7g014180 66.480 179 53 5 1 178 1 173 2.41e-70 221
MS.gene91615.t1 MTR_2g089765 32.193 497 281 17 8 478 16 482 6.08e-68 226
MS.gene91615.t1 MTR_7g014360 32.439 410 226 11 76 478 21 386 1.11e-67 222
MS.gene91615.t1 MTR_2g089670 32.762 467 268 17 26 478 43 477 1.59e-60 206
MS.gene91615.t1 MTR_7g015860 30.600 500 274 16 4 474 1 456 8.01e-59 201
MS.gene91615.t1 MTR_2g089650 29.960 494 299 13 1 478 1 463 4.85e-58 199
MS.gene91615.t1 MTR_3g087640 30.426 493 296 12 9 481 10 475 1.26e-57 198
MS.gene91615.t1 MTR_2g089755 30.687 466 281 12 28 478 37 475 3.79e-56 194
MS.gene91615.t1 MTR_2g089735 31.486 451 268 13 41 478 39 461 3.47e-55 191
MS.gene91615.t1 MTR_8g012750 29.960 494 295 19 8 476 3 470 3.32e-54 189
MS.gene91615.t1 MTR_6g015310 30.711 394 201 9 63 456 12 333 9.70e-51 176
MS.gene91615.t1 MTR_7g014310 27.299 348 180 8 117 461 29 306 1.42e-36 137
MS.gene91615.t1 MTR_2g089665 25.652 460 198 15 8 451 2 333 6.46e-28 114
MS.gene91615.t1 MTR_3g435300 34.061 229 133 7 9 229 4 222 1.65e-26 108
MS.gene91615.t1 MTR_4g007540 23.732 493 289 22 8 476 3 432 6.74e-21 95.1
MS.gene91615.t1 MTR_8g075610 24.444 405 228 18 44 430 30 374 1.27e-20 94.4
MS.gene91615.t1 MTR_7g086000 23.438 448 277 16 7 430 3 408 3.30e-20 93.6
MS.gene91615.t1 MTR_7g085930 23.374 492 320 17 8 478 6 461 2.40e-19 90.9
MS.gene91615.t1 MTR_2g064495 23.829 491 290 22 8 476 3 431 8.17e-19 89.0
MS.gene91615.t1 MTR_3g088420 23.382 479 268 17 17 468 14 420 2.78e-18 87.4
MS.gene91615.t1 MTR_2g105330 24.131 489 291 22 8 476 3 431 3.78e-18 87.0
MS.gene91615.t1 MTR_3g070170 25.054 459 264 19 8 434 12 422 1.64e-17 85.5
MS.gene91615.t1 MTR_4g022290 22.391 460 281 13 28 468 30 432 1.78e-17 85.1
MS.gene91615.t1 MTR_3g101960 24.229 454 260 20 8 434 6 402 1.10e-16 82.8
MS.gene91615.t1 MTR_3g101970 24.390 492 276 20 8 472 6 428 2.76e-16 81.3
MS.gene91615.t1 MTR_4g094828 21.921 479 282 18 20 468 21 437 6.64e-16 80.1
MS.gene91615.t1 MTR_4g022800 23.418 474 283 18 17 468 14 429 1.92e-15 79.0
MS.gene91615.t1 MTR_3g049150 23.476 443 266 20 63 478 51 447 2.65e-15 78.6
MS.gene91615.t1 MTR_3g026310 22.678 463 275 15 8 442 4 411 2.77e-15 78.2
MS.gene91615.t1 MTR_4g094842 23.611 432 252 16 62 468 57 435 3.00e-15 78.2
MS.gene91615.t1 MTR_4g094838 23.963 434 255 13 20 440 20 391 5.91e-15 77.0
MS.gene91615.t1 MTR_7g014205 32.812 128 66 3 318 440 2 114 6.85e-15 71.6
MS.gene91615.t1 MTR_7g014210 35.514 107 67 2 336 440 24 130 1.31e-14 72.0
MS.gene91615.t1 MTR_2g015430 20.950 463 287 15 8 457 2 398 2.55e-14 75.5
MS.gene91615.t1 MTR_7g014340 56.338 71 24 2 9 75 3 70 3.27e-14 68.9
MS.gene91615.t1 MTR_7g026860 24.786 468 276 19 19 468 16 425 4.38e-14 74.7
MS.gene91615.t1 MTR_3g098980 23.936 376 221 15 67 430 66 388 4.39e-14 74.3
MS.gene91615.t1 MTR_4g022825 22.270 467 288 18 21 468 17 427 4.86e-14 74.3
MS.gene91615.t1 MTR_8g467580 24.065 428 254 16 17 430 15 385 5.33e-14 74.3
MS.gene91615.t1 MTR_8g079710 22.831 438 252 14 21 434 22 397 7.61e-14 73.9
MS.gene91615.t1 MTR_4g022670 24.167 480 283 21 17 469 14 439 4.89e-13 71.2
MS.gene91615.t1 MTR_7g014220 58.929 56 20 1 22 77 12 64 6.77e-13 64.7
MS.gene91615.t1 MTR_4g097090 22.013 477 302 20 26 479 28 457 1.21e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91615.t1 AT5G39080 39.623 477 256 14 8 475 5 458 7.09e-96 297
MS.gene91615.t1 AT5G39050 39.256 484 263 15 4 478 6 467 2.35e-93 291
MS.gene91615.t1 AT3G29590 37.372 487 257 10 1 478 1 448 5.01e-92 287
MS.gene91615.t1 AT5G39090 36.875 480 265 12 4 478 1 447 2.98e-89 280
MS.gene91615.t1 AT3G29635 37.029 478 268 11 8 478 3 454 6.10e-88 277
MS.gene91615.t1 AT3G29670 37.161 479 261 13 8 478 3 449 1.77e-84 268
MS.gene91615.t1 AT3G29680 35.730 459 251 12 24 474 21 443 1.27e-73 239
MS.gene91615.t1 AT5G61160 32.075 477 285 12 8 476 3 448 4.86e-72 235
MS.gene91615.t1 AT1G03940 31.653 496 279 15 9 481 9 467 6.33e-71 233
MS.gene91615.t1 AT1G03495 32.796 372 208 14 1 360 1 342 3.59e-46 164
MS.gene91615.t1 AT5G23940 25.615 488 285 21 8 468 3 439 9.52e-23 101
MS.gene91615.t1 AT2G19070 22.814 469 302 15 26 476 23 449 1.96e-21 97.1
MS.gene91615.t1 AT5G48930 24.017 483 300 20 8 476 3 432 2.80e-21 96.7
MS.gene91615.t1 AT3G50270 26.338 467 289 17 16 469 17 441 1.09e-17 85.9
MS.gene91615.t1 AT5G57840 23.265 490 303 16 8 478 3 438 1.11e-17 85.9
MS.gene91615.t1 AT3G29720 32.127 221 106 10 99 304 10 201 1.21e-17 82.4
MS.gene91615.t1 AT5G07850 24.779 452 275 19 1 434 1 405 7.98e-16 80.1
MS.gene91615.t1 AT3G29690 31.373 153 95 3 329 478 33 178 1.91e-15 74.7
MS.gene91615.t1 AT3G50280 24.337 415 261 14 28 434 27 396 1.94e-15 79.0
MS.gene91615.t1 AT5G41040 23.944 426 262 19 61 474 63 438 5.35e-15 77.4
MS.gene91615.t1 AT5G41040 23.944 426 262 19 61 474 79 454 8.00e-15 77.0
MS.gene91615.t1 AT3G50300 26.440 382 229 16 64 434 56 396 6.73e-14 73.9
MS.gene91615.t1 AT5G07860 23.596 445 285 16 1 434 1 401 8.36e-14 73.9
MS.gene91615.t1 AT1G28680 22.772 404 243 17 45 433 40 389 7.46e-13 70.9
MS.gene91615.t1 AT3G48720 24.138 290 174 9 67 352 61 308 2.33e-12 69.3
MS.gene91615.t1 AT1G28680 22.186 311 198 9 45 352 40 309 5.46e-12 67.8

Find 63 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATAAAGGCTCTAAATT+TGG 0.169522 7.4:+85203278 None:intergenic
TGTTTCCTTCGATAAAATTT+TGG 0.187419 7.4:-85203528 MS.gene91615:CDS
TTGAAAGGTAGTATTGAATT+TGG 0.208629 7.4:-85202522 MS.gene91615:CDS
TTTGGATTGAATTGGATTAA+TGG 0.211797 7.4:+85203596 None:intergenic
TTGAATTGGATTAATGGTTT+TGG 0.231343 7.4:+85203602 None:intergenic
TTCAATATTGTTGTTCCATT+TGG 0.246981 7.4:+85203040 None:intergenic
GAGAGCGAAGATTTGAGTTT+TGG 0.251282 7.4:+85203683 None:intergenic
ACAAAAGTGGACAGCTTCTT+AGG 0.251396 7.4:+85202993 None:intergenic
CGTCATCATTTGGATTGAAT+TGG 0.258288 7.4:+85203588 None:intergenic
GGAGTATATGAGATTGATTT+TGG 0.276059 7.4:-85202621 MS.gene91615:CDS
ATGATTGGTGAAGGAGTTAA+AGG 0.329186 7.4:-85202672 MS.gene91615:CDS
AACGAATTCTCAAAATCATT+TGG 0.329734 7.4:+85203224 None:intergenic
GAGAAACTTTGCATTGTTCA+TGG 0.331192 7.4:+85203846 None:intergenic
ATTTGATGAAAATAAATAAC+AGG 0.346339 7.4:-85203070 MS.gene91615:CDS
CTTTAGCTGGTAACATCGTT+TGG 0.362068 7.4:-85203637 MS.gene91615:CDS
GATAGTTGGGTTGAAGACTT+AGG 0.368460 7.4:+85203824 None:intergenic
GTTAAAGGAATAGGAGTTGC+AGG 0.381644 7.4:-85202657 MS.gene91615:CDS
AATTGGTTTGACAGAAAGTA+AGG 0.387323 7.4:-85202547 MS.gene91615:CDS
TGTGAGAGGGAGAGATAGTT+GGG 0.393003 7.4:+85203811 None:intergenic
AAGGAAACTCCGTCATCATT+TGG 0.395044 7.4:+85203578 None:intergenic
GGTGAAGGAGTTAAAGGAAT+AGG 0.395384 7.4:-85202666 MS.gene91615:CDS
TGCATTTCAACCAATCGTTA+AGG 0.404523 7.4:-85203129 MS.gene91615:CDS
ACACACCATGCTGTTCTTGA+TGG 0.421878 7.4:-85203371 MS.gene91615:CDS
ATTGATAGAGGATTAACAAT+TGG 0.431776 7.4:-85202564 MS.gene91615:CDS
ATGTGAGAGGGAGAGATAGT+TGG 0.439215 7.4:+85203810 None:intergenic
TAGAAGAAAATACGTTCTAC+TGG 0.445325 7.4:+85203758 None:intergenic
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7.4:-85202642 MS.gene91615:CDS
AGAATTCGTTCATTAATACT+TGG 0.456841 7.4:-85203211 MS.gene91615:CDS
GAGATTACTTCAATTGATAG+AGG 0.456941 7.4:-85202576 MS.gene91615:CDS
CAACACTTCCTCCCTTTAGC+TGG 0.464034 7.4:-85203650 MS.gene91615:CDS
CAGCTAAAGGGAGGAAGTGT+TGG 0.471757 7.4:+85203651 None:intergenic
CAAAACAAAAGAGATGGATA+AGG 0.478383 7.4:-85202739 MS.gene91615:CDS
TATAGATATATAGCTATGAT+TGG 0.478762 7.4:-85202687 MS.gene91615:CDS
AGCACATGTAAGAACAAAAG+TGG 0.494080 7.4:+85202980 None:intergenic
ATAACAGGGTGTTATCCAAA+TGG 0.497827 7.4:-85203055 MS.gene91615:CDS
CAAACGATGTTACCAGCTAA+AGG 0.503485 7.4:+85203638 None:intergenic
TATGACTTTACAAAAGAAGA+TGG 0.504011 7.4:-85202792 MS.gene91615:CDS
AAAACAAAAGAGATGGATAA+GGG 0.505500 7.4:-85202738 MS.gene91615:CDS
GATCGCCTTTGCTATACAAA+CGG 0.514173 7.4:+85202950 None:intergenic
AAACGATGTTACCAGCTAAA+GGG 0.515290 7.4:+85203639 None:intergenic
TGGAACAACAATATTGAAGA+AGG 0.519341 7.4:-85203035 MS.gene91615:CDS
ACAGAAAGTAAGGATTTGAA+AGG 0.525092 7.4:-85202537 MS.gene91615:CDS
CGAACTGAATCCTTAACGAT+TGG 0.540576 7.4:+85203119 None:intergenic
GTAGGGTGTGAATGTGAACT+TGG 0.545769 7.4:+85203728 None:intergenic
TGTTCTTGATAAGCATGTGA+TGG 0.547164 7.4:-85202496 MS.gene91615:CDS
TGTTTCCGTTTGTATAGCAA+AGG 0.550669 7.4:-85202955 MS.gene91615:CDS
AATCTTGATCTGCAATCCAC+AGG 0.563131 7.4:+85202882 None:intergenic
TATATAGCTATGATTGGTGA+AGG 0.570710 7.4:-85202681 MS.gene91615:CDS
TTATGTCAAAACAAAAGAGA+TGG 0.571134 7.4:-85202745 MS.gene91615:CDS
GTGTGAATGTGAACTTGGGA+GGG 0.578151 7.4:+85203733 None:intergenic
CGAGAAAGAGAAGTTTCTTG+TGG 0.588324 7.4:+85203494 None:intergenic
CAATTCAATCCAAATGATGA+CGG 0.601071 7.4:-85203587 MS.gene91615:CDS
ATCACATTGTGCTAAGAGCA+AGG 0.610064 7.4:+85203559 None:intergenic
GGTGTGAATGTGAACTTGGG+AGG 0.617310 7.4:+85203732 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7.4:-85202647 MS.gene91615:CDS
GAATCTGATGATTCTAAGTG+AGG 0.622054 7.4:+85203461 None:intergenic
CAACCATGTTCATCAAAGCA+TGG 0.631200 7.4:-85203340 MS.gene91615:CDS
ATGGTGTGTGCTTATTCCAA+TGG 0.644576 7.4:+85203385 None:intergenic
TTTGATGAAAATAAATAACA+GGG 0.650830 7.4:-85203069 MS.gene91615:CDS
TAGGGTGTGAATGTGAACTT+GGG 0.653813 7.4:+85203729 None:intergenic
AGACCATGCTTTGATGAACA+TGG 0.653845 7.4:+85203337 None:intergenic
CGATGTTACCAGCTAAAGGG+AGG 0.666686 7.4:+85203642 None:intergenic
TTAAAGGAATAGGAGTTGCA+GGG 0.673383 7.4:-85202656 MS.gene91615:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGATGAAAATAAATAAC+AGG - chr7.4:85203257-85203276 MS.gene91615:CDS 15.0%
!! TTTGATGAAAATAAATAACA+GGG - chr7.4:85203258-85203277 MS.gene91615:CDS 15.0%
!!! CAATTTCCAAAATAATTTTT+AGG + chr7.4:85203484-85203503 None:intergenic 15.0%
!! TATAGATATATAGCTATGAT+TGG - chr7.4:85203640-85203659 MS.gene91615:CDS 20.0%
!!! AAAAAGCAGAAATTTTCTTT+TGG - chr7.4:85203418-85203437 MS.gene91615:CDS 20.0%
!!! AAATAATTTTTAGGTATTGG+TGG + chr7.4:85203475-85203494 None:intergenic 20.0%
!!! AGATTTTCAAAGAAAAAAGT+AGG + chr7.4:85202620-85202639 None:intergenic 20.0%
!!! CCAAAATAATTTTTAGGTAT+TGG + chr7.4:85203478-85203497 None:intergenic 20.0%
!!! CCAATACCTAAAAATTATTT+TGG - chr7.4:85203475-85203494 MS.gene91615:CDS 20.0%
!!! GATTTTCAAAGAAAAAAGTA+GGG + chr7.4:85202619-85202638 None:intergenic 20.0%
! AAAACAAAAGAGATGGATAA+GGG - chr7.4:85203589-85203608 MS.gene91615:CDS 25.0%
! AACGAATTCTCAAAATCATT+TGG + chr7.4:85203106-85203125 None:intergenic 25.0%
! AGAATTCGTTCATTAATACT+TGG - chr7.4:85203116-85203135 MS.gene91615:CDS 25.0%
! ATTGATAGAGGATTAACAAT+TGG - chr7.4:85203763-85203782 MS.gene91615:CDS 25.0%
! TAATAACCCTTCATGAAAAA+TGG + chr7.4:85203869-85203888 None:intergenic 25.0%
! TATGACTTTACAAAAGAAGA+TGG - chr7.4:85203535-85203554 MS.gene91615:CDS 25.0%
! TTATGTCAAAACAAAAGAGA+TGG - chr7.4:85203582-85203601 MS.gene91615:CDS 25.0%
! TTTGGATTGAATTGGATTAA+TGG + chr7.4:85202734-85202753 None:intergenic 25.0%
!! TCTTCTTTTGTAAAGTCATA+TGG + chr7.4:85203535-85203554 None:intergenic 25.0%
!! TGAATTGGATTAATGGTTTT+GGG + chr7.4:85202727-85202746 None:intergenic 25.0%
!! TGTTTCCTTCGATAAAATTT+TGG - chr7.4:85202799-85202818 MS.gene91615:CDS 25.0%
!! TTCAATATTGTTGTTCCATT+TGG + chr7.4:85203290-85203309 None:intergenic 25.0%
!! TTGAAAGGTAGTATTGAATT+TGG - chr7.4:85203805-85203824 MS.gene91615:CDS 25.0%
!! TTGAATTGGATTAATGGTTT+TGG + chr7.4:85202728-85202747 None:intergenic 25.0%
!!! ATTAGAACCATTTTTGGAAA+GGG - chr7.4:85203066-85203085 MS.gene91615:CDS 25.0%
!!! TATGAGATTGATTTTGGTTT+TGG - chr7.4:85203712-85203731 MS.gene91615:CDS 25.0%
!!! TATTAGAACCATTTTTGGAA+AGG - chr7.4:85203065-85203084 MS.gene91615:CDS 25.0%
!!! TCACATTTTTTGACTTGATT+TGG - chr7.4:85202534-85202553 MS.gene91615:CDS 25.0%
!!! TCCAAAAATGGTTCTAATAA+AGG + chr7.4:85203064-85203083 None:intergenic 25.0%
!!! TCTAATAAAGGCTCTAAATT+TGG + chr7.4:85203052-85203071 None:intergenic 25.0%
!!! TTCAAACCATTTTTCATGAA+GGG - chr7.4:85203860-85203879 MS.gene91615:CDS 25.0%
!!! TTTCAAACCATTTTTCATGA+AGG - chr7.4:85203859-85203878 MS.gene91615:CDS 25.0%
ACAGAAAGTAAGGATTTGAA+AGG - chr7.4:85203790-85203809 MS.gene91615:CDS 30.0%
ATCAAGTCAAAAAATGTGAG+AGG + chr7.4:85202533-85202552 None:intergenic 30.0%
CAAAACAAAAGAGATGGATA+AGG - chr7.4:85203588-85203607 MS.gene91615:CDS 30.0%
CAATTCAATCCAAATGATGA+CGG - chr7.4:85202740-85202759 MS.gene91615:CDS 30.0%
GAGATTACTTCAATTGATAG+AGG - chr7.4:85203751-85203770 MS.gene91615:CDS 30.0%
TAGAAGAAAATACGTTCTAC+TGG + chr7.4:85202572-85202591 None:intergenic 30.0%
TATATAGCTATGATTGGTGA+AGG - chr7.4:85203646-85203665 MS.gene91615:CDS 30.0%
TCAAGTCAAAAAATGTGAGA+GGG + chr7.4:85202532-85202551 None:intergenic 30.0%
TGGAACAACAATATTGAAGA+AGG - chr7.4:85203292-85203311 MS.gene91615:CDS 30.0%
! AAAAACCACTTTCTGGAAAA+AGG + chr7.4:85202922-85202941 None:intergenic 30.0%
! AAAACCACTTTCTGGAAAAA+GGG + chr7.4:85202921-85202940 None:intergenic 30.0%
! GCCTTTATTAGAACCATTTT+TGG - chr7.4:85203060-85203079 MS.gene91615:CDS 30.0%
! TTTCTGGAAAAAGGGTTATT+TGG + chr7.4:85202913-85202932 None:intergenic 30.0%
!! AATTGGTTTGACAGAAAGTA+AGG - chr7.4:85203780-85203799 MS.gene91615:CDS 30.0%
!! GAATTGGATTAATGGTTTTG+GGG + chr7.4:85202726-85202745 None:intergenic 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7.4:85203706-85203725 MS.gene91615:CDS 30.0%
!!! AGATTGATTTTGGTTTTGGA+AGG - chr7.4:85203716-85203735 MS.gene91615:CDS 30.0%
!!! ATTTTCTTTTGGTTTTCCTG+TGG - chr7.4:85203429-85203448 MS.gene91615:CDS 30.0%
!!! TTTCTGCTTTTTATCGCTTT+CGG + chr7.4:85203410-85203429 None:intergenic 30.0%
AAACGATGTTACCAGCTAAA+GGG + chr7.4:85202691-85202710 None:intergenic 35.0%
AGCACATGTAAGAACAAAAG+TGG + chr7.4:85203350-85203369 None:intergenic 35.0%
ATGACTTCCCTTTCCAAAAA+TGG + chr7.4:85203076-85203095 None:intergenic 35.0%
ATGATTGGTGAAGGAGTTAA+AGG - chr7.4:85203655-85203674 MS.gene91615:CDS 35.0%
CGTCATCATTTGGATTGAAT+TGG + chr7.4:85202742-85202761 None:intergenic 35.0%
GAATCTGATGATTCTAAGTG+AGG + chr7.4:85202869-85202888 None:intergenic 35.0%
GAGAAACTTTGCATTGTTCA+TGG + chr7.4:85202484-85202503 None:intergenic 35.0%
TGCATTTCAACCAATCGTTA+AGG - chr7.4:85203198-85203217 MS.gene91615:CDS 35.0%
TGTTCTTGATAAGCATGTGA+TGG - chr7.4:85203831-85203850 MS.gene91615:CDS 35.0%
TGTTTCCGTTTGTATAGCAA+AGG - chr7.4:85203372-85203391 MS.gene91615:CDS 35.0%
TTAAAGGAATAGGAGTTGCA+GGG - chr7.4:85203671-85203690 MS.gene91615:CDS 35.0%
! ATAACAGGGTGTTATCCAAA+TGG - chr7.4:85203272-85203291 MS.gene91615:CDS 35.0%
! ATAACCCTTTTTCCAGAAAG+TGG - chr7.4:85202914-85202933 MS.gene91615:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+AGG - chr7.4:85203601-85203620 MS.gene91615:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.4:85202964-85202983 None:intergenic 35.0%
! GTGCTCCAAAATTTTATCGA+AGG + chr7.4:85202807-85202826 None:intergenic 35.0%
! TTTTATCGCTTTCGGATTGT+TGG + chr7.4:85203402-85203421 None:intergenic 35.0%
AAGGAAACTCCGTCATCATT+TGG + chr7.4:85202752-85202771 None:intergenic 40.0%
AATCTTGATCTGCAATCCAC+AGG + chr7.4:85203448-85203467 None:intergenic 40.0%
ACAAAAGTGGACAGCTTCTT+AGG + chr7.4:85203337-85203356 None:intergenic 40.0%
AGACCATGCTTTGATGAACA+TGG + chr7.4:85202993-85203012 None:intergenic 40.0%
ATCACATTGTGCTAAGAGCA+AGG + chr7.4:85202771-85202790 None:intergenic 40.0%
ATGGTGTGTGCTTATTCCAA+TGG + chr7.4:85202945-85202964 None:intergenic 40.0%
CAAACGATGTTACCAGCTAA+AGG + chr7.4:85202692-85202711 None:intergenic 40.0%
CAACCATGTTCATCAAAGCA+TGG - chr7.4:85202987-85203006 MS.gene91615:CDS 40.0%
CCAATGGAAAAACCACTTTC+TGG + chr7.4:85202929-85202948 None:intergenic 40.0%
CGAACTGAATCCTTAACGAT+TGG + chr7.4:85203211-85203230 None:intergenic 40.0%
CGAGAAAGAGAAGTTTCTTG+TGG + chr7.4:85202836-85202855 None:intergenic 40.0%
CTTTAGCTGGTAACATCGTT+TGG - chr7.4:85202690-85202709 MS.gene91615:CDS 40.0%
GGTGAAGGAGTTAAAGGAAT+AGG - chr7.4:85203661-85203680 MS.gene91615:CDS 40.0%
GTTAAAGGAATAGGAGTTGC+AGG - chr7.4:85203670-85203689 MS.gene91615:CDS 40.0%
TAGGGTGTGAATGTGAACTT+GGG + chr7.4:85202601-85202620 None:intergenic 40.0%
! CCAGAAAGTGGTTTTTCCAT+TGG - chr7.4:85202926-85202945 MS.gene91615:CDS 40.0%
! GATCGCCTTTGCTATACAAA+CGG + chr7.4:85203380-85203399 None:intergenic 40.0%
!! GAAGTAATCTCCACTTTTGC+AGG + chr7.4:85203742-85203761 None:intergenic 40.0%
!! GAGAGCGAAGATTTGAGTTT+TGG + chr7.4:85202647-85202666 None:intergenic 40.0%
!! GATAGTTGGGTTGAAGACTT+AGG + chr7.4:85202506-85202525 None:intergenic 40.0%
!!! AATGGTTTTGGGGAATCAGA+AGG + chr7.4:85202716-85202735 None:intergenic 40.0%
ACACACCATGCTGTTCTTGA+TGG - chr7.4:85202956-85202975 MS.gene91615:CDS 45.0%
ATGTGAGAGGGAGAGATAGT+TGG + chr7.4:85202520-85202539 None:intergenic 45.0%
GTAGGGTGTGAATGTGAACT+TGG + chr7.4:85202602-85202621 None:intergenic 45.0%
GTGTGAATGTGAACTTGGGA+GGG + chr7.4:85202597-85202616 None:intergenic 45.0%
TGTGAGAGGGAGAGATAGTT+GGG + chr7.4:85202519-85202538 None:intergenic 45.0%
!! TTTTGGAAGGCCTGCAAAAG+TGG - chr7.4:85203729-85203748 MS.gene91615:CDS 45.0%
CAACACTTCCTCCCTTTAGC+TGG - chr7.4:85202677-85202696 MS.gene91615:CDS 50.0%
CGATGTTACCAGCTAAAGGG+AGG + chr7.4:85202688-85202707 None:intergenic 50.0%
GGTGTGAATGTGAACTTGGG+AGG + chr7.4:85202598-85202617 None:intergenic 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7.4:85203685-85203704 MS.gene91615:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7.4:85203680-85203699 MS.gene91615:CDS 50.0%
! CAGCTAAAGGGAGGAAGTGT+TGG + chr7.4:85202679-85202698 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 85202452 85203897 85202452 ID=MS.gene91615
chr7.4 mRNA 85202452 85203897 85202452 ID=MS.gene91615.t1;Parent=MS.gene91615
chr7.4 exon 85202452 85203897 85202452 ID=MS.gene91615.t1.exon1;Parent=MS.gene91615.t1
chr7.4 CDS 85202452 85203897 85202452 ID=cds.MS.gene91615.t1;Parent=MS.gene91615.t1
Gene Sequence

>MS.gene91615

ATGGCTTCTCTAAACAAACACATCAAAATCCATGAACAATGCAAAGTTTCTCCTAAGTCTTCAACCCAACTATCTCTCCCTCTCACATTTTTTGACTTGATTTGGCTAAGATTTCATCCAGTAGAACGTATTTTCTTCTACACCCTCCCAAGTTCACATTCACACCCTACTTTTTTCTTTGAAAATCTTGTTCCAAAACTCAAATCTTCGCTCTCTTTAACTCTCCAACACTTCCTCCCTTTAGCTGGTAACATCGTTTGGCCTTCTGATTCCCCAAAACCATTAATCCAATTCAATCCAAATGATGACGGAGTTTCCTTGCTCTTAGCACAATGTGATGACGATGATGTTTCCTTCGATAAAATTTTGGAGCACAATACACCACAAGAAACTTCTCTTTCTCGTTCTTTTGTACCTCACTTAGAATCATCAGATTCTTCAACTTCAATTATCTCACTCCAAATAACCCTTTTTCCAGAAAGTGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATGTGTAAATCTCTTGAAGAAGAAACACAATCACCAAATTTAGAGCCTTTATTAGAACCATTTTTGGAAAGGGAAGTCATCAAAGATCCAAATGATTTTGAGAATTCGTTCATTAATACTTGGAACAGTATCTCATCACATTTTGATAAGAGCAATGTGAGAAGCATACAAATTATGTCAAATGCATTTCAACCAATCGTTAAGGATTCAGTTCGAGTAACTTTCGAGCTAACACGCGAAGATTTGATGAAAATAAATAACAGGGTGTTATCCAAATGGAACAACAATATTGAAGAAGGATCACAAGAACAAGAACAACCTAAGAAGCTGTCCACTTTTGTTCTTACATGTGCTTATGTTTCCGTTTGTATAGCAAAGGCGATCCAACAATCCGAAAGCGATAAAAAGCAGAAATTTTCTTTTGGTTTTCCTGTGGATTGCAGATCAAGATTTGATCCACCAATACCTAAAAATTATTTTGGAAATTGTGTATCTAATCATATAATTGATACTGAGCCATATGACTTTACAAAAGAAGATGGAGTTGTGATTGTTGCTAAGAAAATTTATGTCAAAACAAAAGAGATGGATAAGGGTTTTCTTGAAGGAATAGAGACATTGATGTATAGATATATAGCTATGATTGGTGAAGGAGTTAAAGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGCAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACAATTGGTTTGACAGAAAGTAAGGATTTGAAAGGTAGTATTGAATTTGGACTTGTTCTTGATAAGCATGTGATGGATTTGTTTCAAACCATTTTTCATGAAGGGTTATTATGTTTTTGA
Protein sequence

>MS.gene91615.t1

MASLNKHIKIHEQCKVSPKSSTQLSLPLTFFDLIWLRFHPVERIFFYTLPSSHSHPTFFFENLVPKLKSSLSLTLQHFLPLAGNIVWPSDSPKPLIQFNPNDDGVSLLLAQCDDDDVSFDKILEHNTPQETSLSRSFVPHLESSDSSTSIISLQITLFPESGFSIGISTHHAVLDGKSSTMFIKAWSSMCKSLEEETQSPNLEPLLEPFLEREVIKDPNDFENSFINTWNSISSHFDKSNVRSIQIMSNAFQPIVKDSVRVTFELTREDLMKINNRVLSKWNNNIEEGSQEQEQPKKLSTFVLTCAYVSVCIAKAIQQSESDKKQKFSFGFPVDCRSRFDPPIPKNYFGNCVSNHIIDTEPYDFTKEDGVVIVAKKIYVKTKEMDKGFLEGIETLMYRYIAMIGEGVKGIGVAGSTRFGVYEIDFGFGRPAKVEITSIDRGLTIGLTESKDLKGSIEFGLVLDKHVMDLFQTIFHEGLLCF