AlfalfaGEDB | MS.gene021906

M. sativa cultivar XinJiangDaYe / MS.gene021906

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021906.t1	RHN44407.1	71.6	483	133	3	1	482	1	480	1.10E-194	689.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021906.t1	Q940Z5	35.8	481	277	12	8	479	10	467	1.4e-73	278.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021906.t1	A0A396H0H8	71.6	483	133	3	1	482	1	480	8.0e-195	689.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene021906	MS.gene021909	PPI
MS.gene021906	MS.gene021915	PPI
MS.gene021906	MS.gene50355	PPI
MS.gene021906	MS.gene91612	PPI
MS.gene021906	MS.gene028998	PPI
MS.gene021906	MS.gene064101	PPI
MS.gene021906	MS.gene31545	PPI
MS.gene021906	MS.gene021910	PPI
MS.gene012360	MS.gene021906	PPI
MS.gene35744	MS.gene021906	PPI
MS.gene021906	MS.gene50356	PPI
MS.gene021906	MS.gene87536	PPI
MS.gene44643	MS.gene021906	PPI
MS.gene021906	MS.gene56797	PPI
MS.gene028999	MS.gene021906	PPI
MS.gene021906	MS.gene44630	PPI
MS.gene021906	MS.gene069422	PPI
MS.gene021906	MS.gene78818	PPI
MS.gene073299	MS.gene021906	PPI
MS.gene91597	MS.gene021906	PPI
MS.gene021916	MS.gene021906	PPI
MS.gene32261	MS.gene021906	PPI
MS.gene31546	MS.gene021906	PPI
MS.gene021906	MS.gene016532	PPI
MS.gene021906	MS.gene91611	PPI
MS.gene021906	MS.gene44647	PPI
MS.gene99219	MS.gene021906	PPI
MS.gene56795	MS.gene021906	PPI
MS.gene021906	MS.gene011799	PPI
MS.gene066657	MS.gene021906	PPI
MS.gene021906	MS.gene44643	PPI
MS.gene021906	MS.gene002544	PPI
MS.gene021906	MS.gene50420	PPI
MS.gene069423	MS.gene021906	PPI
MS.gene021906	MS.gene070270	PPI
MS.gene021906	MS.gene50382	PPI
MS.gene021906	MS.gene90496	PPI
MS.gene91615	MS.gene021906	PPI
MS.gene50379	MS.gene021906	PPI
MS.gene021906	MS.gene99218	PPI
MS.gene021906	MS.gene44463	PPI
MS.gene44633	MS.gene021906	PPI
MS.gene021906	MS.gene87191	PPI
MS.gene021906	MS.gene48584	PPI
MS.gene021906	MS.gene004218	PPI
MS.gene48585	MS.gene021906	PPI
MS.gene021906	MS.gene016477	PPI
MS.gene021906	MS.gene021913	PPI
MS.gene011837	MS.gene021906	PPI
MS.gene066634	MS.gene021906	PPI
MS.gene35741	MS.gene021906	PPI
MS.gene043346	MS.gene021906	PPI
MS.gene91599	MS.gene021906	PPI
MS.gene021906	MS.gene02573	PPI
MS.gene021906	MS.gene011798	PPI
MS.gene021906	MS.gene35740	PPI
MS.gene021906	MS.gene028994	PPI
MS.gene91598	MS.gene021906	PPI
MS.gene021906	MS.gene87577	PPI
MS.gene49853	MS.gene021906	PPI
MS.gene021906	MS.gene021905	PPI
MS.gene021910	MS.gene021906	PPI
MS.gene028996	MS.gene021906	PPI
MS.gene021906	MS.gene000764	PPI
MS.gene35745	MS.gene021906	PPI
MS.gene011796	MS.gene021906	PPI
MS.gene011801	MS.gene021906	PPI
MS.gene021906	MS.gene91614	PPI
MS.gene87537	MS.gene021906	PPI
MS.gene000764	MS.gene021906	PPI
MS.gene021906	MS.gene91613	PPI
MS.gene021906	MS.gene90492	PPI
MS.gene021906	MS.gene043350	PPI
MS.gene48582	MS.gene021906	PPI
MS.gene021906	MS.gene56798	PPI
MS.gene013787	MS.gene021906	PPI
MS.gene021906	MS.gene56796	PPI
MS.gene31542	MS.gene021906	PPI
MS.gene87532	MS.gene021906	PPI
MS.gene99223	MS.gene021906	PPI
MS.gene021906	MS.gene44642	PPI
MS.gene46265	MS.gene021906	PPI
MS.gene063868	MS.gene021906	PPI
MS.gene021906	MS.gene96337	PPI
MS.gene48581	MS.gene021906	PPI
MS.gene021906	MS.gene066658	PPI
MS.gene021906	MS.gene87496	PPI
MS.gene021906	MS.gene070019	PPI
MS.gene021906	MS.gene043348	PPI
MS.gene021906	MS.gene021917	PPI
MS.gene021906	MS.gene90493	PPI
MS.gene99221	MS.gene021906	PPI
MS.gene021906	MS.gene91596	PPI
MS.gene03202	MS.gene021906	PPI
MS.gene021906	MS.gene021914	PPI
MS.gene021906	MS.gene48581	PPI
MS.gene021906	MS.gene31540	PPI
MS.gene021906	MS.gene066657	PPI
MS.gene021906	MS.gene56799	PPI
MS.gene007831	MS.gene021906	PPI
MS.gene44642	MS.gene021906	PPI
MS.gene021906	MS.gene063865	PPI
MS.gene021906	MS.gene44640	PPI
MS.gene021906	MS.gene032349	PPI
MS.gene91609	MS.gene021906	PPI
MS.gene021906	MS.gene069767	PPI
MS.gene021906	MS.gene021904	PPI
MS.gene44644	MS.gene021906	PPI
MS.gene021906	MS.gene000763	PPI
MS.gene99222	MS.gene021906	PPI
MS.gene021906	MS.gene011716	PPI
MS.gene60208	MS.gene021906	PPI
MS.gene021906	MS.gene44633	PPI
MS.gene021906	MS.gene28251	PPI
MS.gene021906	MS.gene91595	PPI
MS.gene032349	MS.gene021906	PPI
MS.gene021906	MS.gene90491	PPI
MS.gene066656	MS.gene021906	PPI
MS.gene021906	MS.gene043352	PPI
MS.gene021906	MS.gene50384	PPI
MS.gene021906	MS.gene38977	PPI
MS.gene021906	MS.gene066701	PPI
MS.gene066660	MS.gene021906	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021906.t1	MTR_7g013850	78.306	484	102	3	1	482	1	483	0.0	766
MS.gene021906.t1	MTR_7g014200	57.526	485	183	12	1	479	1	468	0.0	536
MS.gene021906.t1	MTR_7g014160	56.522	483	193	11	5	482	6	476	0.0	533
MS.gene021906.t1	MTR_7g014610	57.613	486	190	10	1	480	1	476	0.0	521
MS.gene021906.t1	MTR_7g014620	51.073	466	190	8	19	482	6	435	2.22e-150	436
MS.gene021906.t1	MTR_6g015315	40.402	448	242	10	32	479	30	452	4.65e-107	326
MS.gene021906.t1	MTR_7g014630	58.511	282	106	7	8	285	9	283	1.74e-105	319
MS.gene021906.t1	MTR_6g015320	38.095	483	266	11	1	479	1	454	1.07e-103	317
MS.gene021906.t1	MTR_7g014330	40.748	481	250	16	9	480	3	457	2.67e-103	316
MS.gene021906.t1	MTR_6g015850	39.024	492	252	14	1	479	1	457	2.20e-102	314
MS.gene021906.t1	MTR_6g015815	40.084	474	231	12	20	479	26	460	3.11e-102	314
MS.gene021906.t1	MTR_6g015830	38.843	484	251	12	9	479	9	460	3.14e-102	314
MS.gene021906.t1	MTR_7g014230	39.709	481	257	14	6	478	2	457	4.62e-101	311
MS.gene021906.t1	MTR_7g014250	39.212	482	254	15	9	479	3	456	8.50e-101	310
MS.gene021906.t1	MTR_3g028210	35.331	484	274	14	8	479	8	464	4.22e-78	251
MS.gene021906.t1	MTR_7g014180	67.598	179	51	5	1	178	1	173	4.91e-72	226
MS.gene021906.t1	MTR_7g014360	35.049	408	217	10	78	480	23	387	4.14e-70	228
MS.gene021906.t1	MTR_2g089765	31.791	497	284	15	8	479	16	482	2.19e-67	224
MS.gene021906.t1	MTR_7g014670	54.082	196	88	2	285	479	65	259	6.98e-66	213
MS.gene021906.t1	MTR_2g089670	32.903	465	271	14	26	479	43	477	1.43e-62	211
MS.gene021906.t1	MTR_2g089735	32.151	451	266	14	41	479	39	461	2.95e-59	202
MS.gene021906.t1	MTR_2g089650	28.485	495	306	14	1	479	1	463	4.93e-57	196
MS.gene021906.t1	MTR_3g087640	30.612	490	294	14	9	479	10	472	1.18e-56	195
MS.gene021906.t1	MTR_6g015310	32.353	408	199	14	51	457	2	333	9.66e-56	189
MS.gene021906.t1	MTR_8g012750	29.184	490	305	16	8	477	3	470	2.54e-54	189
MS.gene021906.t1	MTR_7g015860	29.072	485	280	15	5	465	2	446	3.38e-53	186
MS.gene021906.t1	MTR_2g089755	28.419	468	290	13	28	479	37	475	5.52e-52	183
MS.gene021906.t1	MTR_7g014310	29.912	341	170	8	123	462	34	306	6.38e-40	146
MS.gene021906.t1	MTR_2g089665	26.464	461	200	19	8	456	2	335	8.05e-27	111
MS.gene021906.t1	MTR_3g435300	31.624	234	133	7	9	230	4	222	1.40e-24	103
MS.gene021906.t1	MTR_4g007540	23.770	488	296	19	8	477	3	432	6.57e-24	104
MS.gene021906.t1	MTR_5g081960	23.878	490	329	19	4	468	2	472	6.66e-20	92.8
MS.gene021906.t1	MTR_2g064495	23.878	490	292	23	8	477	3	431	5.55e-19	89.4
MS.gene021906.t1	MTR_8g075610	25.000	404	228	18	44	431	30	374	6.56e-19	89.4
MS.gene021906.t1	MTR_3g049150	23.589	496	305	20	8	479	2	447	1.52e-18	88.2
MS.gene021906.t1	MTR_2g105330	23.878	490	292	23	8	477	3	431	3.38e-18	87.0
MS.gene021906.t1	MTR_6g045553	24.078	461	262	17	8	431	14	423	3.66e-18	87.4
MS.gene021906.t1	MTR_7g086000	24.609	447	254	17	67	479	60	457	5.05e-18	86.7
MS.gene021906.t1	MTR_3g026950	23.288	438	271	15	64	476	51	448	1.40e-17	85.5
MS.gene021906.t1	MTR_7g014210	39.252	107	63	2	337	441	24	130	3.58e-17	79.3
MS.gene021906.t1	MTR_7g014205	37.838	111	57	2	332	441	15	114	3.71e-16	75.1
MS.gene021906.t1	MTR_8g096530	22.000	450	290	14	39	482	37	431	6.62e-16	80.1
MS.gene021906.t1	MTR_7g085930	22.800	500	318	19	6	479	4	461	1.30e-15	79.3
MS.gene021906.t1	MTR_8g079970	24.790	476	282	19	11	472	8	421	1.64e-15	79.0
MS.gene021906.t1	MTR_7g014340	42.308	104	48	4	9	107	3	99	1.88e-13	66.6
MS.gene021906.t1	MTR_4g097090	23.629	474	297	20	26	479	28	456	3.42e-13	72.0
MS.gene021906.t1	MTR_3g098980	22.673	419	260	16	67	474	66	431	1.03e-12	70.1
MS.gene021906.t1	MTR_7g014220	57.407	54	20	1	22	75	12	62	8.67e-12	61.2
MS.gene021906.t1	MTR_4g094842	23.174	397	228	17	62	434	57	400	2.46e-11	65.9
MS.gene021906.t1	MTR_3g435290	46.269	67	34	1	413	479	53	117	5.60e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021906.t1	AT5G39050	38.969	485	256	16	8	479	10	467	1.61e-93	291
MS.gene021906.t1	AT5G39080	38.254	481	269	13	1	476	1	458	2.01e-91	286
MS.gene021906.t1	AT3G29590	37.600	500	239	14	1	479	1	448	3.37e-89	280
MS.gene021906.t1	AT5G39090	36.688	477	264	12	6	479	6	447	2.38e-88	278
MS.gene021906.t1	AT3G29670	38.254	481	254	14	8	479	3	449	4.83e-88	277
MS.gene021906.t1	AT3G29635	37.474	483	260	13	8	479	3	454	1.53e-85	271
MS.gene021906.t1	AT5G61160	33.544	474	283	11	8	477	3	448	9.62e-74	240
MS.gene021906.t1	AT3G29680	35.244	471	273	11	6	475	4	443	2.31e-73	239
MS.gene021906.t1	AT1G03940	30.261	499	277	15	9	479	9	464	2.51e-65	218
MS.gene021906.t1	AT1G03495	30.685	365	210	14	10	362	10	343	5.25e-41	150
MS.gene021906.t1	AT5G48930	24.318	440	263	17	7	431	2	386	8.00e-22	98.2
MS.gene021906.t1	AT5G57840	23.457	486	310	17	7	479	2	438	1.37e-18	88.6
MS.gene021906.t1	AT2G19070	23.040	421	267	15	26	430	23	402	1.48e-18	88.6
MS.gene021906.t1	AT3G50280	23.709	426	269	13	19	435	18	396	7.06e-18	86.3
MS.gene021906.t1	AT3G29720	34.078	179	90	6	130	305	48	201	2.10e-17	81.6
MS.gene021906.t1	AT3G29690	33.113	151	95	2	330	479	33	178	3.78e-17	79.7
MS.gene021906.t1	AT3G50300	25.389	386	229	15	64	435	56	396	1.43e-14	76.3
MS.gene021906.t1	AT5G38130	21.136	440	278	17	8	431	24	410	2.25e-12	69.3
MS.gene021906.t1	AT5G07850	23.556	450	282	18	1	434	1	404	3.04e-12	68.9
MS.gene021906.t1	AT4G31910	21.703	364	249	9	44	405	46	375	4.36e-12	68.6

Find 67 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGGATGTGATTGTGAATT+TGG	0.152446	7.1:+81956960	None:intergenic
TGTTTCCTTCGATAAAATTT+TGG	0.171407	7.1:-81956760	MS.gene021906:CDS
TACTACTCCCCTTTCCAAAA+AGG	0.234267	7.1:+81956482	None:intergenic
AATTGAGAGGGAGAGATAAT+TGG	0.254446	7.1:+81957042	None:intergenic
TCAATTTCTTTGACTTGATT+TGG	0.263742	7.1:-81957025	MS.gene021906:CDS
CTTTAGCTGGTAACATTGTT+TGG	0.271388	7.1:-81956869	MS.gene021906:CDS
GGAGTATATGAGATTGATTT+TGG	0.276059	7.1:-81955850	MS.gene021906:CDS
CGAACAGAATCCTTAACTTT+TGG	0.279952	7.1:+81956348	None:intergenic
GAGTGACGTGAGAAGCTTAA+AGG	0.285493	7.1:-81956391	MS.gene021906:CDS
GAGAGTGAAGATCTGAGTTT+TGG	0.296015	7.1:+81956915	None:intergenic
GATAATTGGTTTGCAGAGTT+AGG	0.302514	7.1:+81957056	None:intergenic
ATTGATAGAGGATTAACTAT+TGG	0.313217	7.1:-81955793	MS.gene021906:CDS
TTGAAAGGTGGTGTTGAGTT+TGG	0.313473	7.1:-81955751	MS.gene021906:CDS
GACATTGATGTCTAGATATA+TGG	0.316089	7.1:-81955926	MS.gene021906:CDS
TCCAAATGGTACATTGTAAA+AGG	0.320135	7.1:-81956270	MS.gene021906:CDS
CATCTTCATTTGGATTGAAC+TGG	0.323194	7.1:+81956820	None:intergenic
TGAAAGGTGGTGTTGAGTTT+GGG	0.329161	7.1:-81955750	MS.gene021906:CDS
TTTGAGAGTATGTTCATAAA+TGG	0.339938	7.1:-81956444	MS.gene021906:CDS
AACATACTCTCAAAATCATT+TGG	0.372340	7.1:+81956453	None:intergenic
ATTGTTGCTAATAAAATATA+TGG	0.377503	7.1:-81955991	MS.gene021906:CDS
AACAAAAGTTGACAATCTCT+TGG	0.389956	7.1:+81956221	None:intergenic
CTTATTTGAACCAAAAGTTA+AGG	0.392963	7.1:-81956358	MS.gene021906:CDS
CCAGTTCCTGAAAACTACTT+TGG	0.404805	7.1:-81956081	MS.gene021906:CDS
AAGGAAACTCCATCTTCATT+TGG	0.406411	7.1:+81956810	None:intergenic
ATTTAGAGAAATTAAACAAA+AGG	0.406967	7.1:-81956299	MS.gene021906:CDS
AAGGATGTGATTGTGAATTT+GGG	0.407904	7.1:+81956961	None:intergenic
GTTCATGGAATAGGAGTTGC+AGG	0.409902	7.1:-81955886	MS.gene021906:CDS
ACACACCATGCTGTTCTTGA+TGG	0.421878	7.1:-81956603	MS.gene021906:CDS
TAGAAGAAGATACGTTCAAC+TGG	0.427345	7.1:+81956990	None:intergenic
ATGGATAAGGGTGTTCTTGA+TGG	0.428466	7.1:-81955955	MS.gene021906:CDS
ACAAAAGGGTGTTGTCCAAA+TGG	0.444540	7.1:-81956284	MS.gene021906:CDS
GTTGCAGGGTCAACAAGGTT+TGG	0.454958	7.1:-81955871	MS.gene021906:CDS
ATACTTGGCGAAGGAGTTCA+TGG	0.455848	7.1:-81955901	MS.gene021906:CDS
GAGATTACTTCAATTGATAG+AGG	0.456941	7.1:-81955805	MS.gene021906:CDS
TTTAGAGAAATTAAACAAAA+GGG	0.466166	7.1:-81956298	MS.gene021906:CDS
AGAGTATGTTCATAAATGGT+TGG	0.467719	7.1:-81956440	MS.gene021906:CDS
ACAAAAGTTGACAATCTCTT+GGG	0.469305	7.1:+81956222	None:intergenic
TTTGGAAAGGGGAGTAGTAA+AGG	0.470773	7.1:-81956478	MS.gene021906:CDS
ATCAAGTCAAAGAAATTGAG+AGG	0.478183	7.1:+81957029	None:intergenic
GAGAAACTTTGCATTGTTCA+CGG	0.484129	7.1:+81957078	None:intergenic
GGCGAAGGAGTTCATGGAAT+AGG	0.498286	7.1:-81955895	MS.gene021906:CDS
TTTGGATTGAACTGGATGAC+TGG	0.500975	7.1:+81956828	None:intergenic
TCTTTGACTTGATTTGGCTA+AGG	0.509886	7.1:-81957019	MS.gene021906:CDS
TTGAAAAGATTTACATACAA+AGG	0.511835	7.1:+81956548	None:intergenic
CCACCATGTTCATCAAAGCT+TGG	0.513622	7.1:-81956572	MS.gene021906:CDS
GAAAGTAGAGATTTGAAAGG+TGG	0.519737	7.1:-81955763	MS.gene021906:CDS
TCTAGATATATGGCTATACT+TGG	0.521714	7.1:-81955916	MS.gene021906:CDS
CAGTTCAATCCAAATGAAGA+TGG	0.521842	7.1:-81956819	MS.gene021906:CDS
CAAACAATGTTACCAGCTAA+AGG	0.530448	7.1:+81956870	None:intergenic
ACAGAAAGTAGAGATTTGAA+AGG	0.576880	7.1:-81955766	MS.gene021906:CDS
TGTTCTTGATAAGCATGTGA+TGG	0.582226	7.1:-81955725	MS.gene021906:CDS
CAATGTTACCAGCTAAAGGT+AGG	0.587517	7.1:+81956874	None:intergenic
ATCACATTGTGCTAAGAGCA+AGG	0.592670	7.1:+81956791	None:intergenic
AGTTAAGGATTCTGTTCGAG+TGG	0.595736	7.1:-81956343	MS.gene021906:CDS
GAATCTGTTGATTCTAAGTG+AGG	0.596592	7.1:+81956693	None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG	0.619039	7.1:-81955876	MS.gene021906:CDS
TATATGGCTATACTTGGCGA+AGG	0.626793	7.1:-81955910	MS.gene021906:CDS
GGACCAAGCTTTGATGAACA+TGG	0.630307	7.1:+81956569	None:intergenic
CGAGACAAAGAAGCTTCTTG+TGG	0.639859	7.1:+81956726	None:intergenic
ATGGTGTGTGCTTATTCCAA+TGG	0.644576	7.1:+81956617	None:intergenic
TCAAGTCAAAGAAATTGAGA+GGG	0.648902	7.1:+81957030	None:intergenic
GATGTGATTGTGAATTTGGG+AGG	0.652869	7.1:+81956964	None:intergenic
ATGTGATTGTGAATTTGGGA+GGG	0.663766	7.1:+81956965	None:intergenic
AGAAGAAGATACGTTCAACT+GGG	0.672104	7.1:+81956991	None:intergenic
TTCATGGAATAGGAGTTGCA+GGG	0.694382	7.1:-81955885	MS.gene021906:CDS
GTGGCATTCGAGCTCACACG+CGG	0.697073	7.1:-81956324	MS.gene021906:CDS
CCAAGCTTTGATGAACATGG+TGG	0.697760	7.1:+81956572	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTGTTGCTAATAAAATATA+TGG	-	chr7.1:81956797-81956816	MS.gene021906:CDS	15.0%
!!	ATTTAGAGAAATTAAACAAA+AGG	-	chr7.1:81956489-81956508	MS.gene021906:CDS	15.0%
!!	TTTAGAGAAATTAAACAAAA+GGG	-	chr7.1:81956490-81956509	MS.gene021906:CDS	15.0%
!!	ATATGGTAAAACAAAAATGA+TGG	-	chr7.1:81956814-81956833	MS.gene021906:CDS	20.0%
!!	TCTAAAAAAGGATCTAAATT+TGG	+	chr7.1:81956284-81956303	None:intergenic	20.0%
!!	TTGAAAAGATTTACATACAA+AGG	+	chr7.1:81956243-81956262	None:intergenic	20.0%
!!!	AAAACAAAAATGATGGATAA+GGG	-	chr7.1:81956821-81956840	MS.gene021906:CDS	20.0%
!!!	TAAAACAAAAATGATGGATA+AGG	-	chr7.1:81956820-81956839	MS.gene021906:CDS	20.0%
!	AACATACTCTCAAAATCATT+TGG	+	chr7.1:81956338-81956357	None:intergenic	25.0%
!	ATTGATAGAGGATTAACTAT+TGG	-	chr7.1:81956995-81957014	MS.gene021906:CDS	25.0%
!	CTTATTTGAACCAAAAGTTA+AGG	-	chr7.1:81956430-81956449	MS.gene021906:CDS	25.0%
!!	AATAACCCTTTTTCCAAAAA+AGG	-	chr7.1:81956142-81956161	MS.gene021906:CDS	25.0%
!!	AGGTTTTCAAAAAAGAAAGA+AGG	+	chr7.1:81955849-81955868	None:intergenic	25.0%
!!	ATAACCCTTTTTCCAAAAAA+GGG	-	chr7.1:81956143-81956162	MS.gene021906:CDS	25.0%
!!	TGTTTCCTTCGATAAAATTT+TGG	-	chr7.1:81956028-81956047	MS.gene021906:CDS	25.0%
!!	TTTGAGAGTATGTTCATAAA+TGG	-	chr7.1:81956344-81956363	MS.gene021906:CDS	25.0%
!!!	AAAAACCCTTTTTTGGAAAA+AGG	+	chr7.1:81956151-81956170	None:intergenic	25.0%
!!!	AAAACCCTTTTTTGGAAAAA+GGG	+	chr7.1:81956150-81956169	None:intergenic	25.0%
!!!	TATGAGATTGATTTTGGTTT+TGG	-	chr7.1:81956944-81956963	MS.gene021906:CDS	25.0%
!!!	TCAATTTCTTTGACTTGATT+TGG	-	chr7.1:81955763-81955782	MS.gene021906:CDS	25.0%
!!!	TTCATTCTCTTTTTCATGAA+GGG	-	chr7.1:81957092-81957111	MS.gene021906:CDS	25.0%
!!!	TTTCATTCTCTTTTTCATGA+AGG	-	chr7.1:81957091-81957110	MS.gene021906:CDS	25.0%
	AACAAAAGTTGACAATCTCT+TGG	+	chr7.1:81956570-81956589	None:intergenic	30.0%
	AAGGATGTGATTGTGAATTT+GGG	+	chr7.1:81955830-81955849	None:intergenic	30.0%
	ACAAAAGTTGACAATCTCTT+GGG	+	chr7.1:81956569-81956588	None:intergenic	30.0%
	ACAGAAAGTAGAGATTTGAA+AGG	-	chr7.1:81957022-81957041	MS.gene021906:CDS	30.0%
	AGAGTATGTTCATAAATGGT+TGG	-	chr7.1:81956348-81956367	MS.gene021906:CDS	30.0%
	ATCAAGTCAAAGAAATTGAG+AGG	+	chr7.1:81955762-81955781	None:intergenic	30.0%
	GACATTGATGTCTAGATATA+TGG	-	chr7.1:81956862-81956881	MS.gene021906:CDS	30.0%
	GAGATTACTTCAATTGATAG+AGG	-	chr7.1:81956983-81957002	MS.gene021906:CDS	30.0%
	TCAAGTCAAAGAAATTGAGA+GGG	+	chr7.1:81955761-81955780	None:intergenic	30.0%
	TCCAAATGGTACATTGTAAA+AGG	-	chr7.1:81956518-81956537	MS.gene021906:CDS	30.0%
	TCTAGATATATGGCTATACT+TGG	-	chr7.1:81956872-81956891	MS.gene021906:CDS	30.0%
!	CAATTTCCAAAGTAGTTTTC+AGG	+	chr7.1:81956716-81956735	None:intergenic	30.0%
!	GATGATTTTACAAAGGAAGA+TGG	-	chr7.1:81956767-81956786	MS.gene021906:CDS	30.0%
!	TCCTTTTACAATGTACCATT+TGG	+	chr7.1:81956522-81956541	None:intergenic	30.0%
!	TGAGTCAGATGATTTTACAA+AGG	-	chr7.1:81956760-81956779	MS.gene021906:CDS	30.0%
!	TTTTACAAAGGAAGATGGTT+TGG	-	chr7.1:81956772-81956791	MS.gene021906:CDS	30.0%
!!	GGAGTATATGAGATTGATTT+TGG	-	chr7.1:81956938-81956957	MS.gene021906:CDS	30.0%
!!	TAAAGGTAGGAATTTTTGGA+GGG	+	chr7.1:81955904-81955923	None:intergenic	30.0%
!!	TCCAAAAAGGGTTCTAAAAA+AGG	+	chr7.1:81956296-81956315	None:intergenic	30.0%
!!	TTTAGAACCCTTTTTGGAAA+GGG	-	chr7.1:81956298-81956317	MS.gene021906:CDS	30.0%
!!!	ACTGGTTTTGAAGAATTAGA+AGG	+	chr7.1:81955945-81955964	None:intergenic	30.0%
!!!	AGATTGATTTTGGTTTTGGA+AGG	-	chr7.1:81956948-81956967	MS.gene021906:CDS	30.0%
!!!	TCCTTTTTTAGAACCCTTTT+TGG	-	chr7.1:81956292-81956311	MS.gene021906:CDS	30.0%
!!!	TTTTAGAACCCTTTTTGGAA+AGG	-	chr7.1:81956297-81956316	MS.gene021906:CDS	30.0%
	AAGGAAACTCCATCTTCATT+TGG	+	chr7.1:81955981-81956000	None:intergenic	35.0%
	AATTGAGAGGGAGAGATAAT+TGG	+	chr7.1:81955749-81955768	None:intergenic	35.0%
	AGAAGAAGATACGTTCAACT+GGG	+	chr7.1:81955800-81955819	None:intergenic	35.0%
	ATGTGATTGTGAATTTGGGA+GGG	+	chr7.1:81955826-81955845	None:intergenic	35.0%
	CAAAAATTCCTACCTTTAGC+TGG	-	chr7.1:81955906-81955925	MS.gene021906:CDS	35.0%
	CAAACAATGTTACCAGCTAA+AGG	+	chr7.1:81955921-81955940	None:intergenic	35.0%
	CAGTTCAATCCAAATGAAGA+TGG	-	chr7.1:81955969-81955988	MS.gene021906:CDS	35.0%
	CATCTTCATTTGGATTGAAC+TGG	+	chr7.1:81955971-81955990	None:intergenic	35.0%
	CTTTAGCTGGTAACATTGTT+TGG	-	chr7.1:81955919-81955938	MS.gene021906:CDS	35.0%
	GAAAGTAGAGATTTGAAAGG+TGG	-	chr7.1:81957025-81957044	MS.gene021906:CDS	35.0%
	GAAGGATGTGATTGTGAATT+TGG	+	chr7.1:81955831-81955850	None:intergenic	35.0%
	GAGAAACTTTGCATTGTTCA+CGG	+	chr7.1:81955713-81955732	None:intergenic	35.0%
	TAGAAGAAGATACGTTCAAC+TGG	+	chr7.1:81955801-81955820	None:intergenic	35.0%
	TGTTCTTGATAAGCATGTGA+TGG	-	chr7.1:81957063-81957082	MS.gene021906:CDS	35.0%
!	ATTTTCCATCAAGAACAGCA+TGG	+	chr7.1:81956193-81956212	None:intergenic	35.0%
!	CAGCTAAAGGTAGGAATTTT+TGG	+	chr7.1:81955908-81955927	None:intergenic	35.0%
!	CCAAAAAAGGGTTTTTCCAT+TGG	-	chr7.1:81956155-81956174	MS.gene021906:CDS	35.0%
!	CGAACAGAATCCTTAACTTT+TGG	+	chr7.1:81956443-81956462	None:intergenic	35.0%
!	GTGCTCCAAAATTTTATCGA+AGG	+	chr7.1:81956036-81956055	None:intergenic	35.0%
!!	ATTGTTCACGGATTTTGATG+CGG	+	chr7.1:81955701-81955720	None:intergenic	35.0%
!!	CTAAAGGTAGGAATTTTTGG+AGG	+	chr7.1:81955905-81955924	None:intergenic	35.0%
!!	GAATCTGTTGATTCTAAGTG+AGG	+	chr7.1:81956098-81956117	None:intergenic	35.0%
!!	GATAATTGGTTTGCAGAGTT+AGG	+	chr7.1:81955735-81955754	None:intergenic	35.0%
!!	TCTTTGACTTGATTTGGCTA+AGG	-	chr7.1:81955769-81955788	MS.gene021906:CDS	35.0%
!!	TTAGAACCCTTTTTGGAAAG+GGG	-	chr7.1:81956299-81956318	MS.gene021906:CDS	35.0%
!!!	AAGATCTGAGTTTTGGAACA+AGG	+	chr7.1:81955869-81955888	None:intergenic	35.0%
!!!	CCAATGGAAAAACCCTTTTT+TGG	+	chr7.1:81956158-81956177	None:intergenic	35.0%
	ACTACTCCCCTTTCCAAAAA+GGG	+	chr7.1:81956308-81956327	None:intergenic	40.0%
	AGTTAAGGATTCTGTTCGAG+TGG	-	chr7.1:81956445-81956464	MS.gene021906:CDS	40.0%
	ATCACATTGTGCTAAGAGCA+AGG	+	chr7.1:81956000-81956019	None:intergenic	40.0%
	ATGGTGTGTGCTTATTCCAA+TGG	+	chr7.1:81956174-81956193	None:intergenic	40.0%
	CAATGTTACCAGCTAAAGGT+AGG	+	chr7.1:81955917-81955936	None:intergenic	40.0%
	CCAGTTCCTGAAAACTACTT+TGG	-	chr7.1:81956707-81956726	MS.gene021906:CDS	40.0%
	GATGTGATTGTGAATTTGGG+AGG	+	chr7.1:81955827-81955846	None:intergenic	40.0%
	TACTACTCCCCTTTCCAAAA+AGG	+	chr7.1:81956309-81956328	None:intergenic	40.0%
	TATATGGCTATACTTGGCGA+AGG	-	chr7.1:81956878-81956897	MS.gene021906:CDS	40.0%
	TTCATGGAATAGGAGTTGCA+GGG	-	chr7.1:81956903-81956922	MS.gene021906:CDS	40.0%
	TTTGGAAAGGGGAGTAGTAA+AGG	-	chr7.1:81956310-81956329	MS.gene021906:CDS	40.0%
	TTTGGATTGAACTGGATGAC+TGG	+	chr7.1:81955963-81955982	None:intergenic	40.0%
!	GAGAGTGAAGATCTGAGTTT+TGG	+	chr7.1:81955876-81955895	None:intergenic	40.0%
!	TGAAAGGTGGTGTTGAGTTT+GGG	-	chr7.1:81957038-81957057	MS.gene021906:CDS	40.0%
!	TTGAAAGGTGGTGTTGAGTT+TGG	-	chr7.1:81957037-81957056	MS.gene021906:CDS	40.0%
!!	AAGTAGTTTTCAGGAACTGG+TGG	+	chr7.1:81956707-81956726	None:intergenic	40.0%
!!	ACAAAAGGGTGTTGTCCAAA+TGG	-	chr7.1:81956504-81956523	MS.gene021906:CDS	40.0%
!!	ATGGATAAGGGTGTTCTTGA+TGG	-	chr7.1:81956833-81956852	MS.gene021906:CDS	40.0%
!!	CCAAAGTAGTTTTCAGGAAC+TGG	+	chr7.1:81956710-81956729	None:intergenic	40.0%
!!	GAAGTAATCTCCACTTTTCC+AGG	+	chr7.1:81956974-81956993	None:intergenic	40.0%
	ACACACCATGCTGTTCTTGA+TGG	-	chr7.1:81956185-81956204	MS.gene021906:CDS	45.0%
	ATACTTGGCGAAGGAGTTCA+TGG	-	chr7.1:81956887-81956906	MS.gene021906:CDS	45.0%
	CCACCATGTTCATCAAAGCT+TGG	-	chr7.1:81956216-81956235	MS.gene021906:CDS	45.0%
	CGAGACAAAGAAGCTTCTTG+TGG	+	chr7.1:81956065-81956084	None:intergenic	45.0%
	GAGTGACGTGAGAAGCTTAA+AGG	-	chr7.1:81956397-81956416	MS.gene021906:CDS	45.0%
	GTTCATGGAATAGGAGTTGC+AGG	-	chr7.1:81956902-81956921	MS.gene021906:CDS	45.0%
!	CCAAGCTTTGATGAACATGG+TGG	+	chr7.1:81956219-81956238	None:intergenic	45.0%
!	GGACCAAGCTTTGATGAACA+TGG	+	chr7.1:81956222-81956241	None:intergenic	45.0%
!!	CGGATTTTGATGCGGTTGTT+TGG	+	chr7.1:81955693-81955712	None:intergenic	45.0%
!!	TTTTGGAAGGCCTGGAAAAG+TGG	-	chr7.1:81956961-81956980	MS.gene021906:CDS	45.0%
!!!	GATTTTGGTTTTGGAAGGCC+TGG	-	chr7.1:81956953-81956972	MS.gene021906:CDS	45.0%
	GGCGAAGGAGTTCATGGAAT+AGG	-	chr7.1:81956893-81956912	MS.gene021906:CDS	50.0%
	GTTGCAGGGTCAACAAGGTT+TGG	-	chr7.1:81956917-81956936	MS.gene021906:CDS	50.0%
	TAGGAGTTGCAGGGTCAACA+AGG	-	chr7.1:81956912-81956931	MS.gene021906:CDS	50.0%
	GTGGCATTCGAGCTCACACG+CGG	-	chr7.1:81956464-81956483	MS.gene021906:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	81955681	81957129	81955681	ID=MS.gene021906
chr7.1	mRNA	81955681	81957129	81955681	ID=MS.gene021906.t1;Parent=MS.gene021906
chr7.1	exon	81955681	81957129	81955681	ID=MS.gene021906.t1.exon1;Parent=MS.gene021906.t1
chr7.1	CDS	81955681	81957129	81955681	ID=cds.MS.gene021906.t1;Parent=MS.gene021906.t1

Gene Sequence

>MS.gene021906

ATGACTTCTCCAAACAACCGCATCAAAATCCGTGAACAATGCAAAGTTTCTCCTAACTCTGCAAACCAATTATCTCTCCCTCTCAATTTCTTTGACTTGATTTGGCTAAGGTTTCACCCAGTTGAACGTATCTTCTTCTACACCCTCCCAAATTCACAATCACATCCTTCTTTCTTTTTTGAAAACCTTGTTCCAAAACTCAGATCTTCACTCTCTTTAACCCTCCAAAAATTCCTACCTTTAGCTGGTAACATTGTTTGGCCTTCTAATTCTTCAAAACCAGTCATCCAGTTCAATCCAAATGAAGATGGAGTTTCCTTGCTCTTAGCACAATGTGATGATGATATTGTTTCCTTCGATAAAATTTTGGAGCACAAATCACCACAAGAAGCTTCTTTGTCTCGTTTGTTTGTACCTCACTTAGAATCAACAGATTCTTTTGCTTCTATTATTTCAATTCAAATAACCCTTTTTCCAAAAAAGGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCCACCATGTTCATCAAAGCTTGGTCCTTTGTATGTAAATCTTTTCAAGAAGAAGAAACACAATCACCAAATTTAGATCCTTTTTTAGAACCCTTTTTGGAAAGGGGAGTAGTAAAGGATCCAAATGATTTTGAGAGTATGTTCATAAATGGTTGGAACAAAATCTCATCACATTTTGATAAGAGTGACGTGAGAAGCTTAAAGGTAATGTCAAACTTATTTGAACCAAAAGTTAAGGATTCTGTTCGAGTGGCATTCGAGCTCACACGCGGAGATTTAGAGAAATTAAACAAAAGGGTGTTGTCCAAATGGTACATTGTAAAAGGAGCACAAGAACAAGAACAAGAACAACCCAAGAGATTGTCAACTTTTGTTCTTACATGTGCTTATGTTTCTGTTTGCATAGCTAAAGCGAAACAACAATCTGAAAGCAATCACAAACAAAAATTTTGTTTTTATTTTTCAGTTGATTGCAGATCAAGATTAGATCCACCAGTTCCTGAAAACTACTTTGGAAATTGTCTACGTAATCATATAGTTAATGCTGAGTCAGATGATTTTACAAAGGAAGATGGTTTGGTAATTGTTGCTAATAAAATATATGGTAAAACAAAAATGATGGATAAGGGTGTTCTTGATGGAATAGAGACATTGATGTCTAGATATATGGCTATACTTGGCGAAGGAGTTCATGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGGAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACTATTGGATTAACAGAAAGTAGAGATTTGAAAGGTGGTGTTGAGTTTGGGCTTGTTCTTGATAAGCATGTGATGGATGTGTTTCATTCTCTTTTTCATGAAGGGCTATGTTTTGATTGA

Protein sequence

>MS.gene021906.t1

MTSPNNRIKIREQCKVSPNSANQLSLPLNFFDLIWLRFHPVERIFFYTLPNSQSHPSFFFENLVPKLRSSLSLTLQKFLPLAGNIVWPSNSSKPVIQFNPNEDGVSLLLAQCDDDIVSFDKILEHKSPQEASLSRLFVPHLESTDSFASIISIQITLFPKKGFSIGISTHHAVLDGKSSTMFIKAWSFVCKSFQEEETQSPNLDPFLEPFLERGVVKDPNDFESMFINGWNKISSHFDKSDVRSLKVMSNLFEPKVKDSVRVAFELTRGDLEKLNKRVLSKWYIVKGAQEQEQEQPKRLSTFVLTCAYVSVCIAKAKQQSESNHKQKFCFYFSVDCRSRLDPPVPENYFGNCLRNHIVNAESDDFTKEDGLVIVANKIYGKTKMMDKGVLDGIETLMSRYMAILGEGVHGIGVAGSTRFGVYEIDFGFGRPGKVEITSIDRGLTIGLTESRDLKGGVEFGLVLDKHVMDVFHSLFHEGLCFD