AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48582

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48582.t1 MTR_7g014160 92.632 475 35 0 1 475 1 475 0.0 915
MS.gene48582.t1 MTR_7g014610 75.899 473 111 3 5 474 4 476 0.0 729
MS.gene48582.t1 MTR_7g014200 73.529 476 115 5 1 473 1 468 0.0 721
MS.gene48582.t1 MTR_7g014620 67.749 462 117 4 17 475 2 434 0.0 602
MS.gene48582.t1 MTR_7g013850 57.796 481 187 9 6 474 5 481 0.0 528
MS.gene48582.t1 MTR_7g014630 80.268 299 57 2 1 297 1 299 2.28e-173 491
MS.gene48582.t1 MTR_6g015815 41.453 468 241 10 12 473 20 460 6.28e-112 338
MS.gene48582.t1 MTR_7g014230 42.380 479 242 15 10 476 5 461 8.16e-112 338
MS.gene48582.t1 MTR_7g014670 83.696 184 30 0 292 475 78 261 2.05e-109 325
MS.gene48582.t1 MTR_7g014330 40.928 474 250 13 10 473 3 456 2.86e-109 332
MS.gene48582.t1 MTR_6g015850 40.302 464 243 11 15 473 23 457 3.61e-108 329
MS.gene48582.t1 MTR_6g015320 40.890 472 247 13 9 473 8 454 2.82e-107 326
MS.gene48582.t1 MTR_7g014250 40.966 476 247 15 10 473 3 456 1.69e-104 319
MS.gene48582.t1 MTR_6g015830 39.825 457 240 12 26 473 30 460 5.49e-104 318
MS.gene48582.t1 MTR_6g015315 40.129 466 258 8 10 473 6 452 1.47e-103 317
MS.gene48582.t1 MTR_7g014180 74.286 175 43 1 1 175 1 173 9.58e-87 263
MS.gene48582.t1 MTR_3g028210 36.402 478 270 12 9 473 8 464 7.66e-84 266
MS.gene48582.t1 MTR_7g014360 36.816 402 208 11 80 473 23 386 1.42e-75 242
MS.gene48582.t1 MTR_2g089765 32.924 489 282 14 9 473 16 482 1.58e-70 232
MS.gene48582.t1 MTR_3g087640 32.990 485 282 16 10 473 10 472 6.87e-66 219
MS.gene48582.t1 MTR_2g089650 33.063 493 280 17 1 473 1 463 6.04e-65 217
MS.gene48582.t1 MTR_7g015860 31.158 475 270 11 6 456 2 443 6.38e-65 217
MS.gene48582.t1 MTR_2g089735 33.559 444 261 13 43 473 39 461 1.47e-64 216
MS.gene48582.t1 MTR_2g089670 32.035 462 275 13 26 473 41 477 3.33e-62 210
MS.gene48582.t1 MTR_2g089755 32.759 464 267 15 30 473 37 475 1.89e-61 208
MS.gene48582.t1 MTR_8g012750 30.522 498 292 15 9 475 3 477 3.04e-60 205
MS.gene48582.t1 MTR_6g015310 32.648 389 193 10 65 451 12 333 6.48e-57 192
MS.gene48582.t1 MTR_7g014310 29.395 347 175 9 115 458 29 308 1.59e-37 139
MS.gene48582.t1 MTR_2g089665 28.256 453 195 15 9 450 2 335 3.51e-37 139
MS.gene48582.t1 MTR_3g435300 31.359 287 160 9 10 279 4 270 3.73e-35 132
MS.gene48582.t1 MTR_7g086000 25.714 490 311 18 8 476 3 460 1.60e-24 106
MS.gene48582.t1 MTR_3g026950 25.386 453 261 20 55 469 34 447 2.32e-22 99.8
MS.gene48582.t1 MTR_8g075610 24.429 438 272 16 52 471 23 419 4.18e-22 98.6
MS.gene48582.t1 MTR_3g070170 25.330 454 287 16 3 435 6 428 4.32e-21 96.3
MS.gene48582.t1 MTR_4g127650 25.684 475 299 15 17 473 18 456 4.62e-21 95.9
MS.gene48582.t1 MTR_4g007540 24.286 490 284 21 9 471 3 432 5.56e-21 95.5
MS.gene48582.t1 MTR_4g097090 24.152 501 307 18 1 473 1 456 5.30e-19 89.7
MS.gene48582.t1 MTR_8g079950 24.835 455 282 16 12 457 8 411 6.94e-19 89.4
MS.gene48582.t1 MTR_4g094828 22.768 448 285 15 26 455 25 429 5.03e-18 86.7
MS.gene48582.t1 MTR_3g098980 25.060 415 253 15 68 470 65 433 6.22e-18 86.3
MS.gene48582.t1 MTR_3g049150 25.858 437 256 19 65 473 51 447 2.17e-17 84.7
MS.gene48582.t1 MTR_8g096530 23.898 431 267 17 5 425 3 382 1.30e-16 82.4
MS.gene48582.t1 MTR_8g079970 22.870 446 288 14 12 449 8 405 1.51e-16 82.0
MS.gene48582.t1 MTR_8g467580 25.055 451 258 19 8 438 4 394 1.57e-16 82.0
MS.gene48582.t1 MTR_5g081960 24.078 461 295 18 30 456 27 466 1.68e-16 82.4
MS.gene48582.t1 MTR_7g085930 23.185 496 314 17 7 473 4 461 2.04e-16 82.0
MS.gene48582.t1 MTR_2g007880 23.810 441 262 15 52 466 48 440 3.87e-16 80.9
MS.gene48582.t1 MTR_7g014210 38.889 108 63 3 330 435 24 130 1.04e-15 75.1
MS.gene48582.t1 MTR_3g026310 23.256 473 286 17 9 453 4 427 1.22e-15 79.3
MS.gene48582.t1 MTR_7g084910 26.608 342 205 16 9 344 17 318 5.12e-15 77.4
MS.gene48582.t1 MTR_4g094842 26.634 413 230 16 69 455 62 427 1.05e-14 76.6
MS.gene48582.t1 MTR_4g022670 25.799 438 242 17 19 429 15 396 1.90e-14 75.5
MS.gene48582.t1 MTR_7g014205 35.088 114 61 3 323 435 13 114 2.37e-14 69.7
MS.gene48582.t1 MTR_4g022290 22.422 446 275 15 30 455 30 424 2.41e-14 75.5
MS.gene48582.t1 MTR_3g101960 23.733 434 277 14 16 435 15 408 4.20e-14 74.7
MS.gene48582.t1 MTR_4g022800 24.217 479 277 17 19 464 15 440 7.04e-14 73.9
MS.gene48582.t1 MTR_3g102010 23.291 468 302 17 16 467 16 442 8.01e-14 73.9
MS.gene48582.t1 MTR_8g041770 24.703 421 258 16 27 435 27 400 8.17e-14 73.6
MS.gene48582.t1 MTR_7g085990 23.866 419 251 15 38 425 30 411 1.17e-13 73.2
MS.gene48582.t1 MTR_4g022720 24.819 415 228 17 69 457 55 411 5.69e-13 70.9
MS.gene48582.t1 MTR_7g026860 24.892 462 272 15 15 457 9 414 7.72e-13 70.5
MS.gene48582.t1 MTR_3g102020 25.057 439 260 19 19 435 18 409 1.95e-12 69.3
MS.gene48582.t1 MTR_4g094832 25.157 318 185 14 147 453 134 409 6.42e-12 67.8
MS.gene48582.t1 MTR_1g053315 23.155 393 248 18 46 425 58 409 6.60e-12 67.8
MS.gene48582.t1 MTR_7g014340 50.704 71 29 2 10 77 3 70 1.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48582.t1 AT5G39080 40.426 470 258 14 7 469 3 457 2.04e-102 314
MS.gene48582.t1 AT5G39050 41.053 475 257 15 7 473 8 467 4.02e-99 306
MS.gene48582.t1 AT3G29590 39.121 478 251 13 4 473 3 448 4.94e-96 297
MS.gene48582.t1 AT3G29670 38.616 448 246 9 29 473 28 449 1.21e-91 286
MS.gene48582.t1 AT5G39090 38.344 459 247 15 21 473 19 447 1.53e-89 280
MS.gene48582.t1 AT3G29635 36.242 447 263 10 29 473 28 454 5.32e-87 274
MS.gene48582.t1 AT3G29680 32.604 457 283 8 21 475 16 449 9.02e-76 245
MS.gene48582.t1 AT5G61160 30.687 466 296 10 9 469 3 446 4.56e-73 238
MS.gene48582.t1 AT1G03940 32.577 485 277 15 10 473 9 464 7.68e-65 217
MS.gene48582.t1 AT1G03495 33.518 361 195 13 11 354 10 342 8.90e-43 155
MS.gene48582.t1 AT5G23940 27.119 472 292 20 9 463 3 439 1.38e-24 106
MS.gene48582.t1 AT5G41040 25.060 419 257 18 66 471 66 440 4.39e-20 92.8
MS.gene48582.t1 AT5G41040 25.060 419 257 18 66 471 82 456 4.99e-20 92.8
MS.gene48582.t1 AT5G48930 24.059 478 300 20 9 471 3 432 9.43e-20 92.0
MS.gene48582.t1 AT3G29720 30.476 210 122 6 106 310 26 216 4.50e-19 86.3
MS.gene48582.t1 AT3G29690 28.402 169 80 4 323 473 33 178 2.48e-16 77.4
MS.gene48582.t1 AT1G28680 23.224 366 239 10 68 428 61 389 5.58e-15 77.4
MS.gene48582.t1 AT1G65450 23.711 485 301 19 8 474 17 450 1.52e-13 72.8
MS.gene48582.t1 AT1G28680 23.571 280 182 7 68 346 61 309 1.58e-13 72.4
MS.gene48582.t1 AT5G63560 24.330 448 268 19 1 437 1 388 2.57e-13 72.0
MS.gene48582.t1 AT3G48720 23.317 416 258 16 68 469 60 428 8.42e-13 70.5

Find 88 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTACTTTGACATATTT+TGG 0.126266 7.2:-83043200 MS.gene48582:CDS
ACAAAAGATGATAAAGATTT+TGG 0.133685 7.2:+83042421 None:intergenic
CCATTACCAAATAATTATTT+TGG 0.140939 7.2:-83042283 MS.gene48582:CDS
TTTGGAGTATATTGGATTAT+TGG 0.190059 7.2:+83043003 None:intergenic
CAATTTCCAAAATAATTATT+TGG 0.203936 7.2:+83042277 None:intergenic
CTCCATCATTTGGAGTATAT+TGG 0.207093 7.2:+83042995 None:intergenic
GTGAAAAGTTCACAAATAAT+TGG 0.216402 7.2:-83042636 MS.gene48582:CDS
GAGAGTGAAGATTTGAGAAT+TGG 0.258335 7.2:+83043090 None:intergenic
GAAAAGGAGAAAGAGAAGTT+TGG 0.285622 7.2:-83042346 MS.gene48582:CDS
CGAACATAGTCCTCGAGTTT+TGG 0.302201 7.2:+83042541 None:intergenic
TGCCTATTCGCTTGTTTGTT+TGG 0.316376 7.2:-83042389 MS.gene48582:CDS
CAAGCTCACACGTGAAGATT+TGG 0.321812 7.2:-83042509 MS.gene48582:CDS
GGTGTTTATGAGATTGATTT+TGG 0.325995 7.2:-83042049 MS.gene48582:CDS
GAAGGGTGTGAATGTGAATT+TGG 0.329027 7.2:+83043135 None:intergenic
TTTCGTTTCCTTGTTCATTT+GGG 0.333723 7.2:+83042590 None:intergenic
CCAAAATAATTATTTGGTAA+TGG 0.352680 7.2:+83042283 None:intergenic
TTTAAAACTTTGTTTGTTGA+AGG 0.354845 7.2:-83041896 MS.gene48582:CDS
AGCAAATGGTGTTATCGAAA+TGG 0.363374 7.2:-83042477 MS.gene48582:CDS
CTTTAGCTGGTAAAATCGTT+TGG 0.366471 7.2:-83043044 MS.gene48582:CDS
ATAAAGGAAACTCCATCATT+TGG 0.372397 7.2:+83042985 None:intergenic
ATTAGACTCTGCAATGATAA+AGG 0.374589 7.2:+83042969 None:intergenic
AATGAAAAGGGTGTTCTTGA+TGG 0.383812 7.2:-83042154 MS.gene48582:CDS
ACTCACCATGCTGTTCTTGA+TGG 0.395647 7.2:-83042793 MS.gene48582:CDS
GTTGCTGGGTCTAATAGATT+TGG 0.400903 7.2:-83042070 MS.gene48582:CDS
AGTAAAGGTGGAATTGAAGT+TGG 0.405338 7.2:-83041950 MS.gene48582:CDS
TTTAACGTTGTTGTTGTTGT+TGG 0.405998 7.2:+83043281 None:intergenic
AAAAGGAGAAAGAGAAGTTT+GGG 0.406901 7.2:-83042345 MS.gene48582:CDS
GAAACTATCTCCACCTTTGT+TGG 0.407590 7.2:+83042016 None:intergenic
AACCATGTTCATCAAAGCTT+GGG 0.411745 7.2:-83042761 MS.gene48582:CDS
AATAAACATGATAAATGAAA+AGG 0.414449 7.2:-83042167 MS.gene48582:CDS
TAGAGGTTTAACCATTGCTT+TGG 0.417032 7.2:-83041987 MS.gene48582:CDS
AATATGTCAAAGTAAGTAAG+AGG 0.422390 7.2:+83043204 None:intergenic
TTTGAAATGATGGGAGTTGC+TGG 0.422760 7.2:-83042085 MS.gene48582:CDS
AACGAGACAAAGAAGCTTCA+TGG 0.423717 7.2:+83042914 None:intergenic
ATGATTTCCCTGTCTAATAG+AGG 0.429761 7.2:+83042676 None:intergenic
AGGTTTAACCATTGCTTTGG+CGG 0.432846 7.2:-83041984 MS.gene48582:CDS
TGTTTGGCAAAAGCAATTCA+TGG 0.435306 7.2:-83042373 MS.gene48582:CDS
GCAAATGGTGTTATCGAAAT+GGG 0.438928 7.2:-83042476 MS.gene48582:CDS
CAACCATGTTCATCAAAGCT+TGG 0.444772 7.2:-83042762 MS.gene48582:CDS
CAAGACTTTCTCCCTTTAGC+TGG 0.445546 7.2:-83043057 MS.gene48582:CDS
TGCCAAACAAACAAGCGAAT+AGG 0.447920 7.2:+83042387 None:intergenic
TAGAAGAAAACACGTTCTAC+TGG 0.449218 7.2:+83043165 None:intergenic
ATCCAATATACTCCAAATGA+TGG 0.454687 7.2:-83042997 MS.gene48582:CDS
GAGATAGTTTCTGCGGATAG+AGG 0.456278 7.2:-83042004 MS.gene48582:CDS
AGCAATTCATGGAGTTGAAA+AGG 0.457057 7.2:-83042362 MS.gene48582:CDS
GTAAAGGTGGAATTGAAGTT+GGG 0.458078 7.2:-83041949 MS.gene48582:CDS
TTTGGATAAAATAAAGCAAA+TGG 0.463119 7.2:-83042491 MS.gene48582:CDS
TCTTGTTGATACAAAACCAT+TGG 0.464537 7.2:-83042242 MS.gene48582:CDS
AGTTAAAACCTCTATTAGAC+AGG 0.472806 7.2:-83042684 MS.gene48582:CDS
TTGGATTACATAAACGAAGA+TGG 0.480943 7.2:-83042223 MS.gene48582:CDS
TTGTTCATTTGGGAACATCT+TGG 0.485342 7.2:+83042600 None:intergenic
TGTTAATAATAAGCATGTAA+TGG 0.488630 7.2:-83041924 MS.gene48582:CDS
ATAAACATGATAAATGAAAA+GGG 0.491218 7.2:-83042166 MS.gene48582:CDS
ATTGGTTGTTGAGATTCTAA+AGG 0.497127 7.2:+83043021 None:intergenic
TGGATTACATAAACGAAGAT+GGG 0.499627 7.2:-83042222 MS.gene48582:CDS
AGCTTTGATGAACATGGTTG+AGG 0.508130 7.2:+83042765 None:intergenic
AGCTTCTTGAAGAAGAAAGA+AGG 0.508191 7.2:+83043117 None:intergenic
CAGCTAAAGGGAGAAAGTCT+TGG 0.511543 7.2:+83043058 None:intergenic
AAATAATTATTTGGTAATGG+TGG 0.512227 7.2:+83042286 None:intergenic
TTTAACTCTGGCAACAAAGT+TGG 0.512683 7.2:+83042700 None:intergenic
ACGAGACAAAGAAGCTTCAT+GGG 0.525539 7.2:+83042915 None:intergenic
TCTTCGTTTATGTAATCCAA+TGG 0.526428 7.2:+83042226 None:intergenic
ATCATCAAAGACAACGGACT+TGG 0.535734 7.2:-83042658 MS.gene48582:CDS
TAACCTTGCTCTGCAATCTA+CGG 0.539940 7.2:+83042312 None:intergenic
CTAAAGGGAGAAAGTCTTGG+AGG 0.549374 7.2:+83043061 None:intergenic
AGAAAACACGTTCTACTGGA+TGG 0.552911 7.2:+83043169 None:intergenic
TTTGCTCTCCGCCAAAGCAA+TGG 0.568195 7.2:+83041976 None:intergenic
ATATGTCAAAGTAAGTAAGA+GGG 0.583236 7.2:+83043205 None:intergenic
GAATCTGTCGATTCTAAGTG+TGG 0.604551 7.2:+83042883 None:intergenic
GCGGAGAGCAAAGACAGTAA+AGG 0.605107 7.2:-83041965 MS.gene48582:CDS
AGCCCAAGCTTTGATGAACA+TGG 0.605776 7.2:+83042759 None:intergenic
TATGTCAAAGTAAGTAAGAG+GGG 0.605853 7.2:+83043206 None:intergenic
GCTTCTTGAAGAAGAAAGAA+GGG 0.606219 7.2:+83043118 None:intergenic
GGTGTGAATGTGAATTTGGA+AGG 0.606669 7.2:+83043139 None:intergenic
TCGCCGTAGATTGCAGAGCA+AGG 0.607885 7.2:-83042315 MS.gene48582:CDS
TGGTTGGGGAAGACCAACAA+AGG 0.614189 7.2:-83042029 MS.gene48582:CDS
ATGGTGAGTGCTTATTCCAA+TGG 0.618439 7.2:+83042807 None:intergenic
AAGATGTTCCCAAATGAACA+AGG 0.625531 7.2:-83042598 MS.gene48582:CDS
TTGAAATGATGGGAGTTGCT+GGG 0.626589 7.2:-83042084 MS.gene48582:CDS
TTGGGGAAGACCAACAAAGG+TGG 0.638548 7.2:-83042026 MS.gene48582:CDS
GAGAGCAAAGACAGTAAAGG+TGG 0.639303 7.2:-83041962 MS.gene48582:CDS
TAAAGGGAGAAAGTCTTGGA+GGG 0.642807 7.2:+83043062 None:intergenic
GGATTACATAAACGAAGATG+GGG 0.660097 7.2:-83042221 MS.gene48582:CDS
AAAGGTGGAGATAGTTTCTG+CGG 0.670530 7.2:-83042011 MS.gene48582:CDS
GTGTGAATGTGAATTTGGAA+GGG 0.682521 7.2:+83043140 None:intergenic
GTTAAAACCTCTATTAGACA+GGG 0.687259 7.2:-83042683 MS.gene48582:CDS
AGGGAAATCATCAAAGACAA+CGG 0.689246 7.2:-83042664 MS.gene48582:CDS
CGAGACAAAGAAGCTTCATG+GGG 0.726125 7.2:+83042916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAACATGATAAATGAAA+AGG - chr7.2:83043001-83043020 MS.gene48582:CDS 15.0%
!! ATAAACATGATAAATGAAAA+GGG - chr7.2:83043002-83043021 MS.gene48582:CDS 15.0%
!! CAATTTCCAAAATAATTATT+TGG + chr7.2:83042894-83042913 None:intergenic 15.0%
!! CCAAAATAATTATTTGGTAA+TGG + chr7.2:83042888-83042907 None:intergenic 20.0%
!! TGTTAATAATAAGCATGTAA+TGG - chr7.2:83043244-83043263 MS.gene48582:CDS 20.0%
!! TTTGGATAAAATAAAGCAAA+TGG - chr7.2:83042677-83042696 MS.gene48582:CDS 20.0%
!!! AAATAATTATTTGGTAATGG+TGG + chr7.2:83042885-83042904 None:intergenic 20.0%
!!! AAGTGAAAAATTTGAAATGA+TGG - chr7.2:83043073-83043092 MS.gene48582:CDS 20.0%
!!! ACAAAAGATGATAAAGATTT+TGG + chr7.2:83042750-83042769 None:intergenic 20.0%
!!! AGTGAAAAATTTGAAATGAT+GGG - chr7.2:83043074-83043093 MS.gene48582:CDS 20.0%
!!! ATTATTTTGGAAATTGTGTA+TGG - chr7.2:83042898-83042917 MS.gene48582:CDS 20.0%
!!! CCATTACCAAATAATTATTT+TGG - chr7.2:83042885-83042904 MS.gene48582:CDS 20.0%
!!! TTACTTACTTTGACATATTT+TGG - chr7.2:83041968-83041987 MS.gene48582:CDS 20.0%
!!! TTATTTTGGAAATTGTGTAT+GGG - chr7.2:83042899-83042918 MS.gene48582:CDS 20.0%
!!! TTTAAAACTTTGTTTGTTGA+AGG - chr7.2:83043272-83043291 MS.gene48582:CDS 20.0%
! AATATGTCAAAGTAAGTAAG+AGG + chr7.2:83041967-83041986 None:intergenic 25.0%
! ATATGTCAAAGTAAGTAAGA+GGG + chr7.2:83041966-83041985 None:intergenic 25.0%
! GTGAAAAGTTCACAAATAAT+TGG - chr7.2:83042532-83042551 MS.gene48582:CDS 25.0%
!! TTTGGAGTATATTGGATTAT+TGG + chr7.2:83042168-83042187 None:intergenic 25.0%
!!! TATTTTGGAAATTGTGTATG+GGG - chr7.2:83042900-83042919 MS.gene48582:CDS 25.0%
!!! TTATGAGATTGATTTTGGTT+GGG - chr7.2:83043124-83043143 MS.gene48582:CDS 25.0%
!!! TTTATGAGATTGATTTTGGT+TGG - chr7.2:83043123-83043142 MS.gene48582:CDS 25.0%
AAAAACCACTTTCAGGAAAA+AGG + chr7.2:83042341-83042360 None:intergenic 30.0%
AAAACCACTTTCAGGAAAAA+GGG + chr7.2:83042340-83042359 None:intergenic 30.0%
AAAAGGAGAAAGAGAAGTTT+GGG - chr7.2:83042823-83042842 MS.gene48582:CDS 30.0%
AGTTAAAACCTCTATTAGAC+AGG - chr7.2:83042484-83042503 MS.gene48582:CDS 30.0%
ATAAAGGAAACTCCATCATT+TGG + chr7.2:83042186-83042205 None:intergenic 30.0%
ATCCAATATACTCCAAATGA+TGG - chr7.2:83042171-83042190 MS.gene48582:CDS 30.0%
ATTAGACTCTGCAATGATAA+AGG + chr7.2:83042202-83042221 None:intergenic 30.0%
ATTGGTTGTTGAGATTCTAA+AGG + chr7.2:83042150-83042169 None:intergenic 30.0%
GTTAAAACCTCTATTAGACA+GGG - chr7.2:83042485-83042504 MS.gene48582:CDS 30.0%
TATGTCAAAGTAAGTAAGAG+GGG + chr7.2:83041965-83041984 None:intergenic 30.0%
TCTTCGTTTATGTAATCCAA+TGG + chr7.2:83042945-83042964 None:intergenic 30.0%
TCTTGTTGATACAAAACCAT+TGG - chr7.2:83042926-83042945 MS.gene48582:CDS 30.0%
TGGATTACATAAACGAAGAT+GGG - chr7.2:83042946-83042965 MS.gene48582:CDS 30.0%
TTGGATTACATAAACGAAGA+TGG - chr7.2:83042945-83042964 MS.gene48582:CDS 30.0%
TTTCGTTTCCTTGTTCATTT+GGG + chr7.2:83042581-83042600 None:intergenic 30.0%
! AAACGATTTTACCAGCTAAA+GGG + chr7.2:83042125-83042144 None:intergenic 30.0%
! TTTAACGTTGTTGTTGTTGT+TGG + chr7.2:83041890-83041909 None:intergenic 30.0%
! TTTTCGTTTCCTTGTTCATT+TGG + chr7.2:83042582-83042601 None:intergenic 30.0%
!! GGTGTTTATGAGATTGATTT+TGG - chr7.2:83043119-83043138 MS.gene48582:CDS 30.0%
!!! ACTTTGACATATTTTGGCTA+AGG - chr7.2:83041974-83041993 MS.gene48582:CDS 30.0%
!!! GTTGTTTTTTGAGTTGATGA+TGG + chr7.2:83041940-83041959 None:intergenic 30.0%
!!! TATGAGATTGATTTTGGTTG+GGG - chr7.2:83043125-83043144 MS.gene48582:CDS 30.0%
!!! TCTAATAGAGGTTTTAACTC+TGG + chr7.2:83042483-83042502 None:intergenic 30.0%
AACCATGTTCATCAAAGCTT+GGG - chr7.2:83042407-83042426 MS.gene48582:CDS 35.0%
AAGATGTTCCCAAATGAACA+AGG - chr7.2:83042570-83042589 MS.gene48582:CDS 35.0%
AGCAATTCATGGAGTTGAAA+AGG - chr7.2:83042806-83042825 MS.gene48582:CDS 35.0%
AGCTTCTTGAAGAAGAAAGA+AGG + chr7.2:83042054-83042073 None:intergenic 35.0%
AGGGAAATCATCAAAGACAA+CGG - chr7.2:83042504-83042523 MS.gene48582:CDS 35.0%
AGTAAAGGTGGAATTGAAGT+TGG - chr7.2:83043218-83043237 MS.gene48582:CDS 35.0%
ATGATTTCCCTGTCTAATAG+AGG + chr7.2:83042495-83042514 None:intergenic 35.0%
CTTTAGCTGGTAAAATCGTT+TGG - chr7.2:83042124-83042143 MS.gene48582:CDS 35.0%
GAAAAGGAGAAAGAGAAGTT+TGG - chr7.2:83042822-83042841 MS.gene48582:CDS 35.0%
GAGAGTGAAGATTTGAGAAT+TGG + chr7.2:83042081-83042100 None:intergenic 35.0%
GCTTCTTGAAGAAGAAAGAA+GGG + chr7.2:83042053-83042072 None:intergenic 35.0%
GGATTACATAAACGAAGATG+GGG - chr7.2:83042947-83042966 MS.gene48582:CDS 35.0%
GTAAAGGTGGAATTGAAGTT+GGG - chr7.2:83043219-83043238 MS.gene48582:CDS 35.0%
GTGTGAATGTGAATTTGGAA+GGG + chr7.2:83042031-83042050 None:intergenic 35.0%
TAGAAGAAAACACGTTCTAC+TGG + chr7.2:83042006-83042025 None:intergenic 35.0%
TAGAGGTTTAACCATTGCTT+TGG - chr7.2:83043181-83043200 MS.gene48582:CDS 35.0%
TGTTTGGCAAAAGCAATTCA+TGG - chr7.2:83042795-83042814 MS.gene48582:CDS 35.0%
TTGTTCATTTGGGAACATCT+TGG + chr7.2:83042571-83042590 None:intergenic 35.0%
TTTAACTCTGGCAACAAAGT+TGG + chr7.2:83042471-83042490 None:intergenic 35.0%
TTTCAGGAAAAAGGGTTATC+TGG + chr7.2:83042332-83042351 None:intergenic 35.0%
! ATAACCCTTTTTCCTGAAAG+TGG - chr7.2:83042333-83042352 MS.gene48582:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.2:83042383-83042402 None:intergenic 35.0%
! CAAACGATTTTACCAGCTAA+AGG + chr7.2:83042126-83042145 None:intergenic 35.0%
! CTCCATCATTTGGAGTATAT+TGG + chr7.2:83042176-83042195 None:intergenic 35.0%
! GAAAAACTTTGGTGTGTTCA+TGG + chr7.2:83041915-83041934 None:intergenic 35.0%
!! AATGAAAAGGGTGTTCTTGA+TGG - chr7.2:83043014-83043033 MS.gene48582:CDS 35.0%
!! AGCAAATGGTGTTATCGAAA+TGG - chr7.2:83042691-83042710 MS.gene48582:CDS 35.0%
!! GCAAATGGTGTTATCGAAAT+GGG - chr7.2:83042692-83042711 MS.gene48582:CDS 35.0%
!! TGATGATGGAGGAAAAACTT+TGG + chr7.2:83041926-83041945 None:intergenic 35.0%
!!! GTTTTTTGAGTTGATGATGG+AGG + chr7.2:83041937-83041956 None:intergenic 35.0%
AAAGGTGGAGATAGTTTCTG+CGG - chr7.2:83043157-83043176 MS.gene48582:CDS 40.0%
AACGAGACAAAGAAGCTTCA+TGG + chr7.2:83042257-83042276 None:intergenic 40.0%
ACGAGACAAAGAAGCTTCAT+GGG + chr7.2:83042256-83042275 None:intergenic 40.0%
AGAAAACACGTTCTACTGGA+TGG + chr7.2:83042002-83042021 None:intergenic 40.0%
AGGTTTAACCATTGCTTTGG+CGG - chr7.2:83043184-83043203 MS.gene48582:CDS 40.0%
ATGGTGAGTGCTTATTCCAA+TGG + chr7.2:83042364-83042383 None:intergenic 40.0%
CAACCATGTTCATCAAAGCT+TGG - chr7.2:83042406-83042425 MS.gene48582:CDS 40.0%
CCAATGGAAAAACCACTTTC+AGG + chr7.2:83042348-83042367 None:intergenic 40.0%
GAAACTATCTCCACCTTTGT+TGG + chr7.2:83043155-83043174 None:intergenic 40.0%
GGTGTGAATGTGAATTTGGA+AGG + chr7.2:83042032-83042051 None:intergenic 40.0%
GTTGCTGGGTCTAATAGATT+TGG - chr7.2:83043098-83043117 MS.gene48582:CDS 40.0%
TAAAGGGAGAAAGTCTTGGA+GGG + chr7.2:83042109-83042128 None:intergenic 40.0%
TAACCTTGCTCTGCAATCTA+CGG + chr7.2:83042859-83042878 None:intergenic 40.0%
TGCCAAACAAACAAGCGAAT+AGG + chr7.2:83042784-83042803 None:intergenic 40.0%
TGCCTATTCGCTTGTTTGTT+TGG - chr7.2:83042779-83042798 MS.gene48582:CDS 40.0%
! ACCTTTTGAACCAAAACTCG+AGG - chr7.2:83042617-83042636 MS.gene48582:CDS 40.0%
! AGCTTTGATGAACATGGTTG+AGG + chr7.2:83042406-83042425 None:intergenic 40.0%
! ATCATCAAAGACAACGGACT+TGG - chr7.2:83042510-83042529 MS.gene48582:CDS 40.0%
! CCTGAAAGTGGTTTTTCCAT+TGG - chr7.2:83042345-83042364 MS.gene48582:CDS 40.0%
! GAAGGGTGTGAATGTGAATT+TGG + chr7.2:83042036-83042055 None:intergenic 40.0%
! TTGAAATGATGGGAGTTGCT+GGG - chr7.2:83043084-83043103 MS.gene48582:CDS 40.0%
! TTTGAAATGATGGGAGTTGC+TGG - chr7.2:83043083-83043102 MS.gene48582:CDS 40.0%
!! GAATCTGTCGATTCTAAGTG+TGG + chr7.2:83042288-83042307 None:intergenic 40.0%
!!! TCCTCGAGTTTTGGTTCAAA+AGG + chr7.2:83042621-83042640 None:intergenic 40.0%
ACTCACCATGCTGTTCTTGA+TGG - chr7.2:83042375-83042394 MS.gene48582:CDS 45.0%
CAAGACTTTCTCCCTTTAGC+TGG - chr7.2:83042111-83042130 MS.gene48582:CDS 45.0%
CAAGCTCACACGTGAAGATT+TGG - chr7.2:83042659-83042678 MS.gene48582:CDS 45.0%
CAGCTAAAGGGAGAAAGTCT+TGG + chr7.2:83042113-83042132 None:intergenic 45.0%
CGAGACAAAGAAGCTTCATG+GGG + chr7.2:83042255-83042274 None:intergenic 45.0%
CTAAAGGGAGAAAGTCTTGG+AGG + chr7.2:83042110-83042129 None:intergenic 45.0%
GAGAGCAAAGACAGTAAAGG+TGG - chr7.2:83043206-83043225 MS.gene48582:CDS 45.0%
GAGATAGTTTCTGCGGATAG+AGG - chr7.2:83043164-83043183 MS.gene48582:CDS 45.0%
! AGCCCAAGCTTTGATGAACA+TGG + chr7.2:83042412-83042431 None:intergenic 45.0%
! CGAACATAGTCCTCGAGTTT+TGG + chr7.2:83042630-83042649 None:intergenic 45.0%
GCGGAGAGCAAAGACAGTAA+AGG - chr7.2:83043203-83043222 MS.gene48582:CDS 50.0%
TGGTTGGGGAAGACCAACAA+AGG - chr7.2:83043139-83043158 MS.gene48582:CDS 50.0%
TTGGGGAAGACCAACAAAGG+TGG - chr7.2:83043142-83043161 MS.gene48582:CDS 50.0%
TTTGCTCTCCGCCAAAGCAA+TGG + chr7.2:83043195-83043214 None:intergenic 50.0%
TCGCCGTAGATTGCAGAGCA+AGG - chr7.2:83042853-83042872 MS.gene48582:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 83041880 83043310 83041880 ID=MS.gene48582
chr7.2 mRNA 83041880 83043310 83041880 ID=MS.gene48582.t1;Parent=MS.gene48582
chr7.2 exon 83041880 83043310 83041880 ID=MS.gene48582.t1.exon1;Parent=MS.gene48582.t1
chr7.2 CDS 83041880 83043310 83041880 ID=cds.MS.gene48582.t1;Parent=MS.gene48582.t1
Gene Sequence

>MS.gene48582

ATGGCTTCCAACAACAACAACAACGTTAAAATCCATGAACACACCAAAGTTTTTCCTCCATCATCAACTCAAAAAACAACAACCCCTCTTACTTACTTTGACATATTTTGGCTAAGGTTCCATCCAGTAGAACGTGTTTTCTTCTACTCCCTTCCAAATTCACATTCACACCCTTCTTTCTTCTTCAAGAAGCTTGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCCAAGACTTTCTCCCTTTAGCTGGTAAAATCGTTTGGCCTTTAGAATCTCAACAACCAATAATCCAATATACTCCAAATGATGGAGTTTCCTTTATCATTGCAGAGTCTAATGCAGATTTCAATCATGTCACTGAAAATTCACCCCATGAAGCTTCTTTGTCTCGTTGTTTTGTACCACACTTAGAATCGACAGATTCTTTTGCTTCTATTATCTCAGTCCAGATAACCCTTTTTCCTGAAAGTGGTTTTTCCATTGGAATAAGCACTCACCATGCTGTTCTTGATGGAAAATCCTCAACCATGTTCATCAAAGCTTGGGCTTATCTATGCAACAAAACTATTGAAACAGAAGAACTACCAACTTTGTTGCCAGAGTTAAAACCTCTATTAGACAGGGAAATCATCAAAGACAACGGACTTGGTGAAAAGTTCACAAATAATTGGAGAGAGATCGTAACCAAGATGTTCCCAAATGAACAAGGAAACGAAAAATGCTTGAAGATTTTACCTTTTGAACCAAAACTCGAGGACTATGTTCGTGCTACATTCAAGCTCACACGTGAAGATTTGGATAAAATAAAGCAAATGGTGTTATCGAAATGGGAATTATTTGACACAAATGAATTGAATTCTAAGCCAAAATCTTTATCATCTTTTGTTCTCACTTGTGCCTATTCGCTTGTTTGTTTGGCAAAAGCAATTCATGGAGTTGAAAAGGAGAAAGAGAAGTTTGGGTTTGCATTCGCCGTAGATTGCAGAGCAAGGTTAGAACCACCATTACCAAATAATTATTTTGGAAATTGTGTATGGGGACATCTTGTTGATACAAAACCATTGGATTACATAAACGAAGATGGGGTGTTTTTAGTTGCTAAGTGTATTCATGAGAAAATAAACATGATAAATGAAAAGGGTGTTCTTGATGGAGCTAGTGATATGTTTGATAAATTCGCTTCTTTAGCAAGTGAAAAATTTGAAATGATGGGAGTTGCTGGGTCTAATAGATTTGGTGTTTATGAGATTGATTTTGGTTGGGGAAGACCAACAAAGGTGGAGATAGTTTCTGCGGATAGAGGTTTAACCATTGCTTTGGCGGAGAGCAAAGACAGTAAAGGTGGAATTGAAGTTGGGATTGTTAATAATAAGCATGTAATGGATCTCTTTAAAACTTTGTTTGTTGAAGGACTTTGCATTATTTGA
Protein sequence

>MS.gene48582.t1

MASNNNNNVKIHEHTKVFPPSSTQKTTTPLTYFDIFWLRFHPVERVFFYSLPNSHSHPSFFFKKLVPILKSSLSLTLQDFLPLAGKIVWPLESQQPIIQYTPNDGVSFIIAESNADFNHVTENSPHEASLSRCFVPHLESTDSFASIISVQITLFPESGFSIGISTHHAVLDGKSSTMFIKAWAYLCNKTIETEELPTLLPELKPLLDREIIKDNGLGEKFTNNWREIVTKMFPNEQGNEKCLKILPFEPKLEDYVRATFKLTREDLDKIKQMVLSKWELFDTNELNSKPKSLSSFVLTCAYSLVCLAKAIHGVEKEKEKFGFAFAVDCRARLEPPLPNNYFGNCVWGHLVDTKPLDYINEDGVFLVAKCIHEKINMINEKGVLDGASDMFDKFASLASEKFEMMGVAGSNRFGVYEIDFGWGRPTKVEIVSADRGLTIALAESKDSKGGIEVGIVNNKHVMDLFKTLFVEGLCII