AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069423

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069423.t1 MTR_7g013850 78.306 484 102 3 1 482 1 483 0.0 766
MS.gene069423.t1 MTR_7g014200 57.526 485 183 12 1 479 1 468 0.0 535
MS.gene069423.t1 MTR_7g014160 56.522 483 193 11 5 482 6 476 0.0 532
MS.gene069423.t1 MTR_7g014610 57.613 486 190 10 1 480 1 476 0.0 521
MS.gene069423.t1 MTR_7g014620 51.073 466 190 8 19 482 6 435 1.64e-150 436
MS.gene069423.t1 MTR_6g015315 40.402 448 242 10 32 479 30 452 2.38e-107 327
MS.gene069423.t1 MTR_7g014630 58.511 282 106 7 8 285 9 283 1.63e-105 319
MS.gene069423.t1 MTR_6g015320 38.095 483 266 11 1 479 1 454 6.51e-104 318
MS.gene069423.t1 MTR_7g014330 40.748 481 250 16 9 480 3 457 3.35e-103 316
MS.gene069423.t1 MTR_6g015850 39.024 492 252 14 1 479 1 457 1.31e-102 315
MS.gene069423.t1 MTR_6g015815 40.084 474 231 12 20 479 26 460 2.30e-102 314
MS.gene069423.t1 MTR_6g015830 38.843 484 251 12 9 479 9 460 2.33e-102 314
MS.gene069423.t1 MTR_7g014230 39.709 481 257 14 6 478 2 457 7.34e-101 310
MS.gene069423.t1 MTR_7g014250 39.212 482 254 15 9 479 3 456 1.44e-100 309
MS.gene069423.t1 MTR_3g028210 35.537 484 273 14 8 479 8 464 1.65e-78 253
MS.gene069423.t1 MTR_7g014180 67.598 179 51 5 1 178 1 173 5.07e-72 226
MS.gene069423.t1 MTR_7g014360 35.049 408 217 10 78 480 23 387 7.11e-70 228
MS.gene069423.t1 MTR_2g089765 31.992 497 283 15 8 479 16 482 7.71e-68 225
MS.gene069423.t1 MTR_7g014670 54.082 196 88 2 285 479 65 259 7.06e-66 213
MS.gene069423.t1 MTR_2g089670 32.903 465 271 14 26 479 43 477 1.43e-62 211
MS.gene069423.t1 MTR_2g089735 32.151 451 266 14 41 479 39 461 4.34e-59 201
MS.gene069423.t1 MTR_2g089650 28.687 495 305 14 1 479 1 463 1.49e-57 197
MS.gene069423.t1 MTR_3g087640 30.612 490 294 14 9 479 10 472 1.55e-56 195
MS.gene069423.t1 MTR_6g015310 32.353 408 199 14 51 457 2 333 6.20e-56 189
MS.gene069423.t1 MTR_8g012750 29.184 490 305 16 8 477 3 470 1.86e-54 189
MS.gene069423.t1 MTR_7g015860 29.072 485 280 15 5 465 2 446 2.19e-53 186
MS.gene069423.t1 MTR_2g089755 28.632 468 289 13 28 479 37 475 1.67e-52 184
MS.gene069423.t1 MTR_7g014310 29.912 341 170 8 123 462 34 306 8.09e-40 146
MS.gene069423.t1 MTR_2g089665 26.464 461 200 19 8 456 2 335 1.36e-26 110
MS.gene069423.t1 MTR_3g435300 32.051 234 132 7 9 230 4 222 4.68e-25 104
MS.gene069423.t1 MTR_4g007540 23.975 488 295 19 8 477 3 432 2.42e-24 105
MS.gene069423.t1 MTR_5g081960 24.082 490 328 19 4 468 2 472 2.59e-20 94.0
MS.gene069423.t1 MTR_2g064495 23.975 488 294 22 8 477 3 431 1.82e-19 90.9
MS.gene069423.t1 MTR_8g075610 24.627 402 232 17 44 431 30 374 6.15e-19 89.4
MS.gene069423.t1 MTR_2g105330 23.975 488 294 22 8 477 3 431 1.14e-18 88.6
MS.gene069423.t1 MTR_3g049150 23.589 496 305 20 8 479 2 447 1.83e-18 88.2
MS.gene069423.t1 MTR_6g045553 24.078 461 262 17 8 431 14 423 3.80e-18 87.4
MS.gene069423.t1 MTR_7g086000 24.609 447 254 17 67 479 60 457 7.18e-18 86.3
MS.gene069423.t1 MTR_3g026950 23.288 438 271 15 64 476 51 448 1.50e-17 85.1
MS.gene069423.t1 MTR_7g014210 39.252 107 63 2 337 441 24 130 3.72e-17 79.3
MS.gene069423.t1 MTR_7g014205 37.838 111 57 2 332 441 15 114 3.71e-16 75.1
MS.gene069423.t1 MTR_8g096530 22.000 450 290 14 39 482 37 431 6.50e-16 80.1
MS.gene069423.t1 MTR_7g085930 22.800 500 318 19 6 479 4 461 1.16e-15 79.7
MS.gene069423.t1 MTR_8g079970 24.790 476 282 21 11 472 8 421 1.91e-15 78.6
MS.gene069423.t1 MTR_7g026860 24.870 386 240 13 55 431 45 389 1.20e-13 73.2
MS.gene069423.t1 MTR_7g014340 42.308 104 48 4 9 107 3 99 1.89e-13 66.6
MS.gene069423.t1 MTR_4g097090 24.051 474 295 23 26 479 28 456 3.95e-13 71.6
MS.gene069423.t1 MTR_3g098980 22.673 419 260 16 67 474 66 431 1.07e-12 70.1
MS.gene069423.t1 MTR_7g014220 57.407 54 20 1 22 75 12 62 8.76e-12 61.2
MS.gene069423.t1 MTR_4g094842 23.174 397 228 17 62 434 57 400 2.53e-11 65.9
MS.gene069423.t1 MTR_3g435290 46.269 67 34 1 413 479 53 117 5.71e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069423.t1 AT5G39050 38.969 485 256 16 8 479 10 467 2.81e-93 291
MS.gene069423.t1 AT5G39080 38.254 481 269 13 1 476 1 458 2.03e-91 286
MS.gene069423.t1 AT3G29590 37.600 500 239 14 1 479 1 448 8.12e-89 279
MS.gene069423.t1 AT5G39090 36.688 477 264 12 6 479 6 447 3.90e-88 277
MS.gene069423.t1 AT3G29670 38.254 481 254 14 8 479 3 449 7.83e-88 276
MS.gene069423.t1 AT3G29635 37.474 483 260 13 8 479 3 454 2.34e-85 270
MS.gene069423.t1 AT5G61160 33.544 474 283 11 8 477 3 448 1.54e-73 239
MS.gene069423.t1 AT3G29680 35.244 471 273 11 6 475 4 443 3.21e-73 238
MS.gene069423.t1 AT1G03940 30.261 499 277 15 9 479 9 464 3.13e-65 218
MS.gene069423.t1 AT1G03495 30.685 365 210 14 10 362 10 343 5.76e-41 150
MS.gene069423.t1 AT5G48930 24.318 440 263 17 7 431 2 386 6.11e-22 98.6
MS.gene069423.t1 AT5G57840 23.663 486 309 17 7 479 2 438 4.82e-19 89.7
MS.gene069423.t1 AT2G19070 23.040 421 267 15 26 430 23 402 1.35e-18 88.6
MS.gene069423.t1 AT3G50280 23.709 426 269 13 19 435 18 396 6.21e-18 86.7
MS.gene069423.t1 AT3G29720 34.078 179 90 6 130 305 48 201 2.97e-17 81.3
MS.gene069423.t1 AT3G29690 33.113 151 95 2 330 479 33 178 3.93e-17 79.7
MS.gene069423.t1 AT3G50300 25.389 386 229 15 64 435 56 396 1.49e-14 76.3
MS.gene069423.t1 AT5G38130 21.136 440 278 17 8 431 24 410 3.35e-12 68.9
MS.gene069423.t1 AT5G07850 23.556 450 282 18 1 434 1 404 4.53e-12 68.6
MS.gene069423.t1 AT4G31910 21.703 364 249 9 44 405 46 375 5.74e-12 68.2

Find 68 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGATGTGATTGTGAATT+TGG 0.152446 7.2:+83315939 None:intergenic
TGTTTCCTTCGATAAAATTT+TGG 0.171407 7.2:-83315739 MS.gene069423:CDS
TACTACTCCCCTTTCCAAAA+AGG 0.234267 7.2:+83315461 None:intergenic
AATTGAGAGGGAGAGATAAT+TGG 0.254446 7.2:+83316021 None:intergenic
TCAATTTCTTTGACTTGATT+TGG 0.263742 7.2:-83316004 MS.gene069423:CDS
CTTTAGCTGGTAACATTGTT+TGG 0.271388 7.2:-83315848 MS.gene069423:CDS
GGAGTATATGAGATTGATTT+TGG 0.276059 7.2:-83314829 MS.gene069423:CDS
CGAACAGAATCCTTAACTTT+TGG 0.279952 7.2:+83315327 None:intergenic
GAGTGACGTGAGAAGCTTAA+AGG 0.285493 7.2:-83315370 MS.gene069423:CDS
GAGAGTGAAGATCTGAGTTT+TGG 0.296015 7.2:+83315894 None:intergenic
GATAATTGGTTTGCGGAGTT+AGG 0.305963 7.2:+83316035 None:intergenic
TTTGAGAGTGTGTTCATAAA+TGG 0.312099 7.2:-83315423 MS.gene069423:CDS
ATTGATAGAGGATTAACTAT+TGG 0.313217 7.2:-83314772 MS.gene069423:CDS
TTGAAAGGTGGTGTTGAGTT+TGG 0.313473 7.2:-83314730 MS.gene069423:CDS
GACATTGATGTCTAGATATA+TGG 0.316089 7.2:-83314905 MS.gene069423:CDS
TCCAAATGGTACATTGTAAA+AGG 0.320135 7.2:-83315249 MS.gene069423:CDS
CATCTTCATTTGGATTGAAC+TGG 0.323194 7.2:+83315799 None:intergenic
TGAAAGGTGGTGTTGAGTTT+GGG 0.329161 7.2:-83314729 MS.gene069423:CDS
ATTGTTGCTAATAAAATATA+TGG 0.377503 7.2:-83314970 MS.gene069423:CDS
AACAAAAGTTGACAATCTCT+TGG 0.389956 7.2:+83315200 None:intergenic
AACACACTCTCAAAATCATT+TGG 0.390399 7.2:+83315432 None:intergenic
CTTATTTGAACCAAAAGTTA+AGG 0.392963 7.2:-83315337 MS.gene069423:CDS
CCAGTTCCTGAAAACTACTT+TGG 0.404805 7.2:-83315060 MS.gene069423:CDS
AAGGAAACTCCATCTTCATT+TGG 0.406411 7.2:+83315789 None:intergenic
ATTTAGAGAAATTAAACAAA+AGG 0.406967 7.2:-83315278 MS.gene069423:CDS
AAGGATGTGATTGTGAATTT+GGG 0.407904 7.2:+83315940 None:intergenic
GTTCATGGAATAGGAGTTGC+AGG 0.409902 7.2:-83314865 MS.gene069423:CDS
ACACACCATGCTGTTCTTGA+TGG 0.421878 7.2:-83315582 MS.gene069423:CDS
TAGAAGAAGATACGTTCAAC+TGG 0.427345 7.2:+83315969 None:intergenic
ATGGATAAGGGTGTTCTTGA+TGG 0.428466 7.2:-83314934 MS.gene069423:CDS
AGGGAGAGATAATTGGTTTG+CGG 0.437972 7.2:+83316028 None:intergenic
ACAAAAGGGTGTTGTCCAAA+TGG 0.444540 7.2:-83315263 MS.gene069423:CDS
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7.2:-83314850 MS.gene069423:CDS
ATACTTGGCGAAGGAGTTCA+TGG 0.455848 7.2:-83314880 MS.gene069423:CDS
GAGATTACTTCAATTGATAG+AGG 0.456941 7.2:-83314784 MS.gene069423:CDS
TTTAGAGAAATTAAACAAAA+GGG 0.466166 7.2:-83315277 MS.gene069423:CDS
ACAAAAGTTGACAATCTCTT+GGG 0.469305 7.2:+83315201 None:intergenic
TTTGGAAAGGGGAGTAGTAA+AGG 0.470773 7.2:-83315457 MS.gene069423:CDS
ATCAAGTCAAAGAAATTGAG+AGG 0.478183 7.2:+83316008 None:intergenic
GAGAAACTTTGCATTGTTCA+CGG 0.484129 7.2:+83316057 None:intergenic
GGCGAAGGAGTTCATGGAAT+AGG 0.498286 7.2:-83314874 MS.gene069423:CDS
TTTGGATTGAACTGGATGAC+TGG 0.500975 7.2:+83315807 None:intergenic
TCTTTGACTTGATTTGGCTA+AGG 0.509886 7.2:-83315998 MS.gene069423:CDS
TTGAAAAGATTTACATACAA+AGG 0.511835 7.2:+83315527 None:intergenic
CCACCATGTTCATCAAAGCT+TGG 0.513622 7.2:-83315551 MS.gene069423:CDS
GAAAGTAGAGATTTGAAAGG+TGG 0.519737 7.2:-83314742 MS.gene069423:CDS
TCTAGATATATGGCTATACT+TGG 0.521714 7.2:-83314895 MS.gene069423:CDS
CAGTTCAATCCAAATGAAGA+TGG 0.521842 7.2:-83315798 MS.gene069423:CDS
CAAACAATGTTACCAGCTAA+AGG 0.530448 7.2:+83315849 None:intergenic
AGAGTGTGTTCATAAATGGT+TGG 0.574509 7.2:-83315419 MS.gene069423:CDS
ACAGAAAGTAGAGATTTGAA+AGG 0.576880 7.2:-83314745 MS.gene069423:CDS
TGTTCTTGATAAGCATGTGA+TGG 0.582226 7.2:-83314704 MS.gene069423:CDS
CAATGTTACCAGCTAAAGGT+AGG 0.587517 7.2:+83315853 None:intergenic
ATCACATTGTGCTAAGAGCA+AGG 0.592670 7.2:+83315770 None:intergenic
AGTTAAGGATTCTGTTCGAG+TGG 0.595736 7.2:-83315322 MS.gene069423:CDS
GAATCTGTTGATTCTAAGTG+AGG 0.596592 7.2:+83315672 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7.2:-83314855 MS.gene069423:CDS
TATATGGCTATACTTGGCGA+AGG 0.626793 7.2:-83314889 MS.gene069423:CDS
GGACCAAGCTTTGATGAACA+TGG 0.630307 7.2:+83315548 None:intergenic
CGAGACAAAGAAGCTTCTTG+TGG 0.639859 7.2:+83315705 None:intergenic
ATGGTGTGTGCTTATTCCAA+TGG 0.644576 7.2:+83315596 None:intergenic
TCAAGTCAAAGAAATTGAGA+GGG 0.648902 7.2:+83316009 None:intergenic
GATGTGATTGTGAATTTGGG+AGG 0.652869 7.2:+83315943 None:intergenic
ATGTGATTGTGAATTTGGGA+GGG 0.663766 7.2:+83315944 None:intergenic
AGAAGAAGATACGTTCAACT+GGG 0.672104 7.2:+83315970 None:intergenic
GTGGCATTCGAGCTCACACG+TGG 0.673134 7.2:-83315303 MS.gene069423:CDS
TTCATGGAATAGGAGTTGCA+GGG 0.694382 7.2:-83314864 MS.gene069423:CDS
CCAAGCTTTGATGAACATGG+TGG 0.697760 7.2:+83315551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTTGCTAATAAAATATA+TGG - chr7.2:83315776-83315795 MS.gene069423:CDS 15.0%
!! ATTTAGAGAAATTAAACAAA+AGG - chr7.2:83315468-83315487 MS.gene069423:CDS 15.0%
!! TTTAGAGAAATTAAACAAAA+GGG - chr7.2:83315469-83315488 MS.gene069423:CDS 15.0%
!! ATATGGTAAAACAAAAATGA+TGG - chr7.2:83315793-83315812 MS.gene069423:CDS 20.0%
!! TCTAAAAAAGGATCTAAATT+TGG + chr7.2:83315263-83315282 None:intergenic 20.0%
!! TTGAAAAGATTTACATACAA+AGG + chr7.2:83315222-83315241 None:intergenic 20.0%
!!! AAAACAAAAATGATGGATAA+GGG - chr7.2:83315800-83315819 MS.gene069423:CDS 20.0%
!!! TAAAACAAAAATGATGGATA+AGG - chr7.2:83315799-83315818 MS.gene069423:CDS 20.0%
! ATTGATAGAGGATTAACTAT+TGG - chr7.2:83315974-83315993 MS.gene069423:CDS 25.0%
! CTTATTTGAACCAAAAGTTA+AGG - chr7.2:83315409-83315428 MS.gene069423:CDS 25.0%
!! AATAACCCTTTTTCCAAAAA+AGG - chr7.2:83315121-83315140 MS.gene069423:CDS 25.0%
!! AGGTTTTCAAAAAAGAAAGA+AGG + chr7.2:83314828-83314847 None:intergenic 25.0%
!! ATAACCCTTTTTCCAAAAAA+GGG - chr7.2:83315122-83315141 MS.gene069423:CDS 25.0%
!! TGTTTCCTTCGATAAAATTT+TGG - chr7.2:83315007-83315026 MS.gene069423:CDS 25.0%
!!! AAAAACCCTTTTTTGGAAAA+AGG + chr7.2:83315130-83315149 None:intergenic 25.0%
!!! AAAACCCTTTTTTGGAAAAA+GGG + chr7.2:83315129-83315148 None:intergenic 25.0%
!!! TATGAGATTGATTTTGGTTT+TGG - chr7.2:83315923-83315942 MS.gene069423:CDS 25.0%
!!! TCAATTTCTTTGACTTGATT+TGG - chr7.2:83314742-83314761 MS.gene069423:CDS 25.0%
!!! TTCATTCTCTTTTTCATGAA+GGG - chr7.2:83316071-83316090 MS.gene069423:CDS 25.0%
!!! TTTCATTCTCTTTTTCATGA+AGG - chr7.2:83316070-83316089 MS.gene069423:CDS 25.0%
AACAAAAGTTGACAATCTCT+TGG + chr7.2:83315549-83315568 None:intergenic 30.0%
AACACACTCTCAAAATCATT+TGG + chr7.2:83315317-83315336 None:intergenic 30.0%
AAGGATGTGATTGTGAATTT+GGG + chr7.2:83314809-83314828 None:intergenic 30.0%
ACAAAAGTTGACAATCTCTT+GGG + chr7.2:83315548-83315567 None:intergenic 30.0%
ACAGAAAGTAGAGATTTGAA+AGG - chr7.2:83316001-83316020 MS.gene069423:CDS 30.0%
ATCAAGTCAAAGAAATTGAG+AGG + chr7.2:83314741-83314760 None:intergenic 30.0%
GACATTGATGTCTAGATATA+TGG - chr7.2:83315841-83315860 MS.gene069423:CDS 30.0%
GAGATTACTTCAATTGATAG+AGG - chr7.2:83315962-83315981 MS.gene069423:CDS 30.0%
TCAAGTCAAAGAAATTGAGA+GGG + chr7.2:83314740-83314759 None:intergenic 30.0%
TCCAAATGGTACATTGTAAA+AGG - chr7.2:83315497-83315516 MS.gene069423:CDS 30.0%
TCTAGATATATGGCTATACT+TGG - chr7.2:83315851-83315870 MS.gene069423:CDS 30.0%
! CAATTTCCAAAGTAGTTTTC+AGG + chr7.2:83315695-83315714 None:intergenic 30.0%
! GATGATTTTACAAAGGAAGA+TGG - chr7.2:83315746-83315765 MS.gene069423:CDS 30.0%
! TCCTTTTACAATGTACCATT+TGG + chr7.2:83315501-83315520 None:intergenic 30.0%
! TGAGTCAGATGATTTTACAA+AGG - chr7.2:83315739-83315758 MS.gene069423:CDS 30.0%
! TTTGAGAGTGTGTTCATAAA+TGG - chr7.2:83315323-83315342 MS.gene069423:CDS 30.0%
! TTTTACAAAGGAAGATGGTT+TGG - chr7.2:83315751-83315770 MS.gene069423:CDS 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7.2:83315917-83315936 MS.gene069423:CDS 30.0%
!! TAAAGGTAGGAATTTTTGGA+GGG + chr7.2:83314883-83314902 None:intergenic 30.0%
!! TCCAAAAAGGGTTCTAAAAA+AGG + chr7.2:83315275-83315294 None:intergenic 30.0%
!! TTTAGAACCCTTTTTGGAAA+GGG - chr7.2:83315277-83315296 MS.gene069423:CDS 30.0%
!!! ACTGGTTTTGAAGAATTAGA+AGG + chr7.2:83314924-83314943 None:intergenic 30.0%
!!! AGATTGATTTTGGTTTTGGA+AGG - chr7.2:83315927-83315946 MS.gene069423:CDS 30.0%
!!! TCCTTTTTTAGAACCCTTTT+TGG - chr7.2:83315271-83315290 MS.gene069423:CDS 30.0%
!!! TTTTAGAACCCTTTTTGGAA+AGG - chr7.2:83315276-83315295 MS.gene069423:CDS 30.0%
AAGGAAACTCCATCTTCATT+TGG + chr7.2:83314960-83314979 None:intergenic 35.0%
AATTGAGAGGGAGAGATAAT+TGG + chr7.2:83314728-83314747 None:intergenic 35.0%
AGAAGAAGATACGTTCAACT+GGG + chr7.2:83314779-83314798 None:intergenic 35.0%
AGAGTGTGTTCATAAATGGT+TGG - chr7.2:83315327-83315346 MS.gene069423:CDS 35.0%
ATGTGATTGTGAATTTGGGA+GGG + chr7.2:83314805-83314824 None:intergenic 35.0%
CAAAAATTCCTACCTTTAGC+TGG - chr7.2:83314885-83314904 MS.gene069423:CDS 35.0%
CAAACAATGTTACCAGCTAA+AGG + chr7.2:83314900-83314919 None:intergenic 35.0%
CAGTTCAATCCAAATGAAGA+TGG - chr7.2:83314948-83314967 MS.gene069423:CDS 35.0%
CATCTTCATTTGGATTGAAC+TGG + chr7.2:83314950-83314969 None:intergenic 35.0%
CTTTAGCTGGTAACATTGTT+TGG - chr7.2:83314898-83314917 MS.gene069423:CDS 35.0%
GAAAGTAGAGATTTGAAAGG+TGG - chr7.2:83316004-83316023 MS.gene069423:CDS 35.0%
GAAGGATGTGATTGTGAATT+TGG + chr7.2:83314810-83314829 None:intergenic 35.0%
GAGAAACTTTGCATTGTTCA+CGG + chr7.2:83314692-83314711 None:intergenic 35.0%
TAGAAGAAGATACGTTCAAC+TGG + chr7.2:83314780-83314799 None:intergenic 35.0%
TGTTCTTGATAAGCATGTGA+TGG - chr7.2:83316042-83316061 MS.gene069423:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.2:83315172-83315191 None:intergenic 35.0%
! CAGCTAAAGGTAGGAATTTT+TGG + chr7.2:83314887-83314906 None:intergenic 35.0%
! CCAAAAAAGGGTTTTTCCAT+TGG - chr7.2:83315134-83315153 MS.gene069423:CDS 35.0%
! CGAACAGAATCCTTAACTTT+TGG + chr7.2:83315422-83315441 None:intergenic 35.0%
! GTGCTCCAAAATTTTATCGA+AGG + chr7.2:83315015-83315034 None:intergenic 35.0%
!! ATTGTTCACGGATTTTGATG+CGG + chr7.2:83314680-83314699 None:intergenic 35.0%
!! CTAAAGGTAGGAATTTTTGG+AGG + chr7.2:83314884-83314903 None:intergenic 35.0%
!! GAATCTGTTGATTCTAAGTG+AGG + chr7.2:83315077-83315096 None:intergenic 35.0%
!! TCTTTGACTTGATTTGGCTA+AGG - chr7.2:83314748-83314767 MS.gene069423:CDS 35.0%
!! TTAGAACCCTTTTTGGAAAG+GGG - chr7.2:83315278-83315297 MS.gene069423:CDS 35.0%
!!! AAGATCTGAGTTTTGGAACA+AGG + chr7.2:83314848-83314867 None:intergenic 35.0%
!!! CCAATGGAAAAACCCTTTTT+TGG + chr7.2:83315137-83315156 None:intergenic 35.0%
ACTACTCCCCTTTCCAAAAA+GGG + chr7.2:83315287-83315306 None:intergenic 40.0%
AGTTAAGGATTCTGTTCGAG+TGG - chr7.2:83315424-83315443 MS.gene069423:CDS 40.0%
ATCACATTGTGCTAAGAGCA+AGG + chr7.2:83314979-83314998 None:intergenic 40.0%
ATGGTGTGTGCTTATTCCAA+TGG + chr7.2:83315153-83315172 None:intergenic 40.0%
CAATGTTACCAGCTAAAGGT+AGG + chr7.2:83314896-83314915 None:intergenic 40.0%
CCAGTTCCTGAAAACTACTT+TGG - chr7.2:83315686-83315705 MS.gene069423:CDS 40.0%
GATGTGATTGTGAATTTGGG+AGG + chr7.2:83314806-83314825 None:intergenic 40.0%
TACTACTCCCCTTTCCAAAA+AGG + chr7.2:83315288-83315307 None:intergenic 40.0%
TATATGGCTATACTTGGCGA+AGG - chr7.2:83315857-83315876 MS.gene069423:CDS 40.0%
TTCATGGAATAGGAGTTGCA+GGG - chr7.2:83315882-83315901 MS.gene069423:CDS 40.0%
TTTGGAAAGGGGAGTAGTAA+AGG - chr7.2:83315289-83315308 MS.gene069423:CDS 40.0%
TTTGGATTGAACTGGATGAC+TGG + chr7.2:83314942-83314961 None:intergenic 40.0%
! GAGAGTGAAGATCTGAGTTT+TGG + chr7.2:83314855-83314874 None:intergenic 40.0%
! TGAAAGGTGGTGTTGAGTTT+GGG - chr7.2:83316017-83316036 MS.gene069423:CDS 40.0%
! TTGAAAGGTGGTGTTGAGTT+TGG - chr7.2:83316016-83316035 MS.gene069423:CDS 40.0%
!! AAGTAGTTTTCAGGAACTGG+TGG + chr7.2:83315686-83315705 None:intergenic 40.0%
!! ACAAAAGGGTGTTGTCCAAA+TGG - chr7.2:83315483-83315502 MS.gene069423:CDS 40.0%
!! AGGGAGAGATAATTGGTTTG+CGG + chr7.2:83314721-83314740 None:intergenic 40.0%
!! ATGGATAAGGGTGTTCTTGA+TGG - chr7.2:83315812-83315831 MS.gene069423:CDS 40.0%
!! CCAAAGTAGTTTTCAGGAAC+TGG + chr7.2:83315689-83315708 None:intergenic 40.0%
!! GAAGTAATCTCCACTTTTCC+AGG + chr7.2:83315953-83315972 None:intergenic 40.0%
!! GATAATTGGTTTGCGGAGTT+AGG + chr7.2:83314714-83314733 None:intergenic 40.0%
ACACACCATGCTGTTCTTGA+TGG - chr7.2:83315164-83315183 MS.gene069423:CDS 45.0%
ATACTTGGCGAAGGAGTTCA+TGG - chr7.2:83315866-83315885 MS.gene069423:CDS 45.0%
CCACCATGTTCATCAAAGCT+TGG - chr7.2:83315195-83315214 MS.gene069423:CDS 45.0%
CGAGACAAAGAAGCTTCTTG+TGG + chr7.2:83315044-83315063 None:intergenic 45.0%
GAGTGACGTGAGAAGCTTAA+AGG - chr7.2:83315376-83315395 MS.gene069423:CDS 45.0%
GTTCATGGAATAGGAGTTGC+AGG - chr7.2:83315881-83315900 MS.gene069423:CDS 45.0%
! CCAAGCTTTGATGAACATGG+TGG + chr7.2:83315198-83315217 None:intergenic 45.0%
! GGACCAAGCTTTGATGAACA+TGG + chr7.2:83315201-83315220 None:intergenic 45.0%
!! CGGATTTTGATGCGGTTGTT+TGG + chr7.2:83314672-83314691 None:intergenic 45.0%
!! TTTTGGAAGGCCTGGAAAAG+TGG - chr7.2:83315940-83315959 MS.gene069423:CDS 45.0%
!!! GATTTTGGTTTTGGAAGGCC+TGG - chr7.2:83315932-83315951 MS.gene069423:CDS 45.0%
GGCGAAGGAGTTCATGGAAT+AGG - chr7.2:83315872-83315891 MS.gene069423:CDS 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7.2:83315896-83315915 MS.gene069423:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7.2:83315891-83315910 MS.gene069423:CDS 50.0%
GTGGCATTCGAGCTCACACG+TGG - chr7.2:83315443-83315462 MS.gene069423:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 83314660 83316108 83314660 ID=MS.gene069423
chr7.2 mRNA 83314660 83316108 83314660 ID=MS.gene069423.t1;Parent=MS.gene069423
chr7.2 exon 83314660 83316108 83314660 ID=MS.gene069423.t1.exon1;Parent=MS.gene069423.t1
chr7.2 CDS 83314660 83316108 83314660 ID=cds.MS.gene069423.t1;Parent=MS.gene069423.t1
Gene Sequence

>MS.gene069423

ATGACTTCTCCAAACAACCGCATCAAAATCCGTGAACAATGCAAAGTTTCTCCTAACTCCGCAAACCAATTATCTCTCCCTCTCAATTTCTTTGACTTGATTTGGCTAAGGTTTCACCCAGTTGAACGTATCTTCTTCTACACCCTCCCAAATTCACAATCACATCCTTCTTTCTTTTTTGAAAACCTTGTTCCAAAACTCAGATCTTCACTCTCTTTAACCCTCCAAAAATTCCTACCTTTAGCTGGTAACATTGTTTGGCCTTCTAATTCTTCAAAACCAGTCATCCAGTTCAATCCAAATGAAGATGGAGTTTCCTTGCTCTTAGCACAATGTGATGATGATATTGTTTCCTTCGATAAAATTTTGGAGCACAAATCACCACAAGAAGCTTCTTTGTCTCGTTTGTTTGTACCTCACTTAGAATCAACAGATTCTTTTGCTTCTATTATTTCAATTCAAATAACCCTTTTTCCAAAAAAGGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCCACCATGTTCATCAAAGCTTGGTCCTTTGTATGTAAATCTTTTCAAGAAGAAGAAACACAATCACCAAATTTAGATCCTTTTTTAGAACCCTTTTTGGAAAGGGGAGTAGTAAAGGATCCAAATGATTTTGAGAGTGTGTTCATAAATGGTTGGAACAAAATCTCATCACATTTTGATAAGAGTGACGTGAGAAGCTTAAAGGTAATGTCAAACTTATTTGAACCAAAAGTTAAGGATTCTGTTCGAGTGGCATTCGAGCTCACACGTGGAGATTTAGAGAAATTAAACAAAAGGGTGTTGTCCAAATGGTACATTGTAAAAGGAGCACAAGAACAAGAACAAGAACAACCCAAGAGATTGTCAACTTTTGTTCTTACATGTGCTTATGTTTCTGTTTGCATAGCTAAAGCGAAACAACAATCTGAAAGCAATCACAAACAAAAATTTTGTTTTTATTTTTCAGTTGATTGCAGATCAAGATTAGATCCACCAGTTCCTGAAAACTACTTTGGAAATTGTCTACGTAATCATATAGTTAATGCTGAGTCAGATGATTTTACAAAGGAAGATGGTTTGGTAATTGTTGCTAATAAAATATATGGTAAAACAAAAATGATGGATAAGGGTGTTCTTGATGGAATAGAGACATTGATGTCTAGATATATGGCTATACTTGGCGAAGGAGTTCATGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGGAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACTATTGGATTAACAGAAAGTAGAGATTTGAAAGGTGGTGTTGAGTTTGGGCTTGTTCTTGATAAGCATGTGATGGATGTGTTTCATTCTCTTTTTCATGAAGGGCTATGTTTTGATTGA
Protein sequence

>MS.gene069423.t1

MTSPNNRIKIREQCKVSPNSANQLSLPLNFFDLIWLRFHPVERIFFYTLPNSQSHPSFFFENLVPKLRSSLSLTLQKFLPLAGNIVWPSNSSKPVIQFNPNEDGVSLLLAQCDDDIVSFDKILEHKSPQEASLSRLFVPHLESTDSFASIISIQITLFPKKGFSIGISTHHAVLDGKSSTMFIKAWSFVCKSFQEEETQSPNLDPFLEPFLERGVVKDPNDFESVFINGWNKISSHFDKSDVRSLKVMSNLFEPKVKDSVRVAFELTRGDLEKLNKRVLSKWYIVKGAQEQEQEQPKRLSTFVLTCAYVSVCIAKAKQQSESNHKQKFCFYFSVDCRSRLDPPVPENYFGNCLRNHIVNAESDDFTKEDGLVIVANKIYGKTKMMDKGVLDGIETLMSRYMAILGEGVHGIGVAGSTRFGVYEIDFGFGRPGKVEITSIDRGLTIGLTESRDLKGGVEFGLVLDKHVMDVFHSLFHEGLCFD