AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91596

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91596.t1 MTR_7g014160 93.697 476 30 0 1 476 1 476 0.0 927
MS.gene91596.t1 MTR_7g014610 76.211 475 110 3 5 476 4 478 0.0 733
MS.gene91596.t1 MTR_7g014200 73.695 479 115 5 1 476 1 471 0.0 725
MS.gene91596.t1 MTR_7g014620 68.035 463 116 4 17 476 2 435 0.0 606
MS.gene91596.t1 MTR_7g013850 57.764 483 188 9 6 476 5 483 0.0 531
MS.gene91596.t1 MTR_7g014630 80.268 299 57 2 1 297 1 299 2.36e-173 491
MS.gene91596.t1 MTR_7g014230 42.737 475 238 15 10 472 5 457 2.99e-112 339
MS.gene91596.t1 MTR_7g014670 83.784 185 30 0 292 476 78 262 1.29e-110 328
MS.gene91596.t1 MTR_7g014330 41.263 475 249 13 10 474 3 457 5.20e-110 333
MS.gene91596.t1 MTR_6g015815 41.026 468 243 10 12 473 20 460 8.94e-110 333
MS.gene91596.t1 MTR_6g015320 40.381 473 248 13 9 473 8 454 1.30e-105 322
MS.gene91596.t1 MTR_7g014250 41.387 476 245 15 10 473 3 456 2.71e-105 321
MS.gene91596.t1 MTR_6g015850 39.440 464 247 11 15 473 23 457 6.82e-105 320
MS.gene91596.t1 MTR_6g015315 40.343 466 257 8 10 473 6 452 5.64e-104 318
MS.gene91596.t1 MTR_6g015830 39.387 457 242 12 26 473 30 460 7.98e-102 313
MS.gene91596.t1 MTR_7g014180 74.857 175 42 1 1 175 1 173 2.40e-87 265
MS.gene91596.t1 MTR_3g028210 35.983 478 272 12 9 473 8 464 3.15e-82 262
MS.gene91596.t1 MTR_7g014360 36.816 402 208 11 80 473 23 386 1.39e-75 242
MS.gene91596.t1 MTR_2g089765 32.720 489 283 14 9 473 16 482 3.25e-70 231
MS.gene91596.t1 MTR_7g015860 31.368 475 269 11 6 456 2 443 2.72e-65 218
MS.gene91596.t1 MTR_3g087640 32.990 485 282 16 10 473 10 472 3.99e-65 218
MS.gene91596.t1 MTR_2g089735 33.784 444 260 13 43 473 39 461 1.52e-64 216
MS.gene91596.t1 MTR_2g089650 32.657 493 282 17 1 473 1 463 5.02e-63 212
MS.gene91596.t1 MTR_2g089670 31.818 462 276 13 26 473 41 477 1.31e-61 209
MS.gene91596.t1 MTR_2g089755 32.543 464 268 15 30 473 37 475 1.23e-60 206
MS.gene91596.t1 MTR_8g012750 30.321 498 293 15 9 475 3 477 1.24e-59 203
MS.gene91596.t1 MTR_6g015310 32.905 389 192 10 65 451 12 333 1.02e-57 194
MS.gene91596.t1 MTR_7g014310 29.395 347 175 9 115 458 29 308 6.74e-38 140
MS.gene91596.t1 MTR_2g089665 27.815 453 197 14 9 450 2 335 4.80e-36 136
MS.gene91596.t1 MTR_3g435300 31.359 287 160 9 10 279 4 270 7.09e-35 131
MS.gene91596.t1 MTR_7g086000 25.257 487 311 18 8 473 3 457 3.94e-23 102
MS.gene91596.t1 MTR_3g026950 25.386 453 261 20 55 469 34 447 1.18e-22 100
MS.gene91596.t1 MTR_8g075610 23.973 438 274 16 52 471 23 419 3.73e-21 95.9
MS.gene91596.t1 MTR_3g070170 25.166 453 289 16 3 435 6 428 6.18e-20 92.8
MS.gene91596.t1 MTR_4g007540 24.440 491 282 22 9 471 3 432 7.77e-20 92.0
MS.gene91596.t1 MTR_6g045553 26.991 452 261 17 8 428 13 426 9.28e-20 92.0
MS.gene91596.t1 MTR_4g127650 24.842 475 303 17 17 473 18 456 1.36e-19 91.7
MS.gene91596.t1 MTR_4g094828 22.768 448 285 15 26 455 25 429 4.19e-18 87.0
MS.gene91596.t1 MTR_3g049150 25.858 437 256 19 65 473 51 447 1.38e-17 85.5
MS.gene91596.t1 MTR_8g079950 24.615 455 283 16 12 457 8 411 1.55e-17 85.1
MS.gene91596.t1 MTR_4g097090 23.553 501 310 18 1 473 1 456 3.85e-17 84.0
MS.gene91596.t1 MTR_7g085930 23.279 494 316 16 7 473 4 461 8.75e-17 83.2
MS.gene91596.t1 MTR_5g081960 23.922 464 292 19 30 456 27 466 4.46e-16 80.9
MS.gene91596.t1 MTR_8g467580 25.277 451 257 19 8 438 4 394 4.79e-16 80.5
MS.gene91596.t1 MTR_3g098980 24.578 415 255 15 68 470 65 433 6.13e-16 80.1
MS.gene91596.t1 MTR_7g014210 38.889 108 63 3 330 435 24 130 8.73e-16 75.5
MS.gene91596.t1 MTR_4g094842 26.877 413 229 16 69 455 62 427 1.62e-15 79.0
MS.gene91596.t1 MTR_8g079970 22.870 446 288 15 12 449 8 405 1.94e-15 78.6
MS.gene91596.t1 MTR_3g026310 22.669 472 290 16 9 453 4 427 4.04e-15 77.8
MS.gene91596.t1 MTR_8g096530 24.074 432 265 17 5 425 3 382 4.89e-15 77.4
MS.gene91596.t1 MTR_4g022670 25.056 447 255 18 9 429 4 396 8.49e-15 76.6
MS.gene91596.t1 MTR_7g014205 35.088 114 61 3 323 435 13 114 1.01e-14 70.9
MS.gene91596.t1 MTR_4g022800 24.838 463 264 17 20 457 15 418 1.58e-14 75.9
MS.gene91596.t1 MTR_4g022290 22.422 446 275 15 30 455 30 424 3.70e-14 74.7
MS.gene91596.t1 MTR_7g085990 24.105 419 250 15 38 425 30 411 5.33e-14 74.3
MS.gene91596.t1 MTR_7g084910 24.594 431 243 20 9 425 17 379 5.46e-14 74.3
MS.gene91596.t1 MTR_4g022720 25.060 415 227 17 69 457 55 411 1.19e-13 73.2
MS.gene91596.t1 MTR_3g101960 23.963 434 276 15 16 435 15 408 5.13e-13 71.2
MS.gene91596.t1 MTR_7g026860 25.604 414 229 15 69 457 55 414 1.03e-12 70.1
MS.gene91596.t1 MTR_3g102010 22.863 468 304 17 16 467 16 442 1.27e-12 70.1
MS.gene91596.t1 MTR_1g053315 22.864 398 243 18 46 425 58 409 5.53e-12 68.2
MS.gene91596.t1 MTR_4g094832 25.157 318 185 14 147 453 134 409 7.95e-12 67.4
MS.gene91596.t1 MTR_7g014340 52.113 71 28 2 10 77 3 70 9.28e-12 62.0
MS.gene91596.t1 MTR_3g102020 24.362 431 273 17 19 435 18 409 1.74e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91596.t1 AT5G39080 40.302 464 255 14 7 463 3 451 5.75e-101 310
MS.gene91596.t1 AT5G39050 40.632 475 259 15 7 473 8 467 1.68e-97 301
MS.gene91596.t1 AT3G29590 39.203 477 252 12 4 473 3 448 7.75e-95 294
MS.gene91596.t1 AT3G29670 38.393 448 247 9 29 473 28 449 2.99e-91 285
MS.gene91596.t1 AT5G39090 38.126 459 248 15 21 473 19 447 1.51e-88 278
MS.gene91596.t1 AT3G29635 36.242 447 263 10 29 473 28 454 1.41e-86 273
MS.gene91596.t1 AT3G29680 33.260 457 280 8 21 475 16 449 3.18e-77 249
MS.gene91596.t1 AT5G61160 30.901 466 295 10 9 469 3 446 4.10e-73 238
MS.gene91596.t1 AT1G03940 32.165 485 279 15 10 473 9 464 1.61e-63 213
MS.gene91596.t1 AT1G03495 32.964 361 197 13 11 354 10 342 1.05e-41 152
MS.gene91596.t1 AT5G23940 26.964 471 292 20 9 462 3 438 1.45e-23 103
MS.gene91596.t1 AT3G29720 30.952 210 121 6 106 310 26 216 1.63e-19 87.4
MS.gene91596.t1 AT5G41040 25.676 370 224 16 66 425 82 410 6.48e-19 89.4
MS.gene91596.t1 AT5G41040 25.676 370 224 16 66 425 66 394 6.85e-19 89.4
MS.gene91596.t1 AT5G48930 23.849 478 301 20 9 471 3 432 1.01e-18 88.6
MS.gene91596.t1 AT3G29690 27.673 159 94 4 323 473 33 178 6.38e-16 76.3
MS.gene91596.t1 AT5G57840 22.874 494 300 20 9 476 3 441 1.38e-15 79.3
MS.gene91596.t1 AT1G28680 23.497 366 238 10 68 428 61 389 3.20e-15 78.2
MS.gene91596.t1 AT1G28680 23.929 280 181 7 68 346 61 309 6.04e-14 73.9
MS.gene91596.t1 AT3G47170 25.733 307 184 11 49 344 57 330 2.84e-13 72.0
MS.gene91596.t1 AT5G63560 24.107 448 269 19 1 437 1 388 5.03e-13 71.2
MS.gene91596.t1 AT3G48720 23.324 373 225 16 68 426 60 385 3.86e-12 68.6

Find 87 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTACTTTGACATATTT+TGG 0.126266 7.4:-84813131 MS.gene91596:CDS
ACAAAAGATGATAAAGATTT+TGG 0.133685 7.4:+84812352 None:intergenic
CCATTACCAAATAATTATTT+TGG 0.140939 7.4:-84812214 MS.gene91596:CDS
TTTGGAGTATATTGGATTAT+TGG 0.190059 7.4:+84812934 None:intergenic
CAATTTCCAAAATAATTATT+TGG 0.203936 7.4:+84812208 None:intergenic
CTCCATCATTTGGAGTATAT+TGG 0.207093 7.4:+84812926 None:intergenic
GTGATAAGTTCACAAATAAT+TGG 0.223223 7.4:-84812567 MS.gene91596:CDS
GAGAGTGAAGATTTGAGAAT+TGG 0.258335 7.4:+84813021 None:intergenic
GAAAAGGAGAAAGAGAAGTT+TGG 0.285622 7.4:-84812277 MS.gene91596:CDS
CGAACATAGTCCTCGAGTTT+TGG 0.302201 7.4:+84812472 None:intergenic
TGCCTATTCGCTTGTTTGTT+TGG 0.316376 7.4:-84812320 MS.gene91596:CDS
CAAGCTCACACGTGAAGATT+TGG 0.321812 7.4:-84812440 MS.gene91596:CDS
GGTGTTTATGAGATTGATTT+TGG 0.325995 7.4:-84811980 MS.gene91596:CDS
GAAGGGTGTGAATGTGAATT+TGG 0.329027 7.4:+84813066 None:intergenic
TTTCGTTTCCTTGTTCATTT+GGG 0.333723 7.4:+84812521 None:intergenic
CCAAAATAATTATTTGGTAA+TGG 0.352680 7.4:+84812214 None:intergenic
TTTAGAACTTTGTTTGTTGA+AGG 0.360118 7.4:-84811827 MS.gene91596:CDS
AGCAAATGGTGTTATCGAAA+TGG 0.363374 7.4:-84812408 MS.gene91596:CDS
CTTTAGCTGGTAAAATCGTT+TGG 0.366471 7.4:-84812975 MS.gene91596:CDS
ATCAAGGAAACTCCATCATT+TGG 0.368212 7.4:+84812916 None:intergenic
ACTCATCATGCTGTTCTTGA+TGG 0.374958 7.4:-84812724 MS.gene91596:CDS
AATGAAAAGGGTGTTCTTGA+TGG 0.383812 7.4:-84812085 MS.gene91596:CDS
GTTGCTGGGTCTAATAGATT+TGG 0.400903 7.4:-84812001 MS.gene91596:CDS
AGTAAAGGTGGAATTGAAGT+TGG 0.405338 7.4:-84811881 MS.gene91596:CDS
TTTAACGTTGTTGTTGTTGT+TGG 0.405998 7.4:+84813212 None:intergenic
AAAAGGAGAAAGAGAAGTTT+GGG 0.406901 7.4:-84812276 MS.gene91596:CDS
GAAACTATCTCCACCTTTGT+TGG 0.407590 7.4:+84811947 None:intergenic
AACCATGTTCATCAAAGCTT+GGG 0.411745 7.4:-84812692 MS.gene91596:CDS
TAGAGGTTTAACCATTGCTT+TGG 0.417032 7.4:-84811918 MS.gene91596:CDS
AATATGTCAAAGTAAGTAAG+AGG 0.422390 7.4:+84813135 None:intergenic
TTTGAAATGATGGGAGTTGC+TGG 0.422760 7.4:-84812016 MS.gene91596:CDS
AACGAGACAAAGAAGCTTCA+TGG 0.423717 7.4:+84812845 None:intergenic
AATAAAGATGATAAATGAAA+AGG 0.424032 7.4:-84812098 MS.gene91596:CDS
ATGATTTCCCTGTCTAATAG+AGG 0.429761 7.4:+84812607 None:intergenic
AGGTTTAACCATTGCTTTGG+CGG 0.432846 7.4:-84811915 MS.gene91596:CDS
TGTTTGGCAAAAGCAATTCA+TGG 0.435306 7.4:-84812304 MS.gene91596:CDS
GCAAATGGTGTTATCGAAAT+GGG 0.438928 7.4:-84812407 MS.gene91596:CDS
CAACCATGTTCATCAAAGCT+TGG 0.444772 7.4:-84812693 MS.gene91596:CDS
CAAGACTTTCTCCCTTTAGC+TGG 0.445546 7.4:-84812988 MS.gene91596:CDS
ATAAAGATGATAAATGAAAA+GGG 0.447547 7.4:-84812097 MS.gene91596:CDS
TGCCAAACAAACAAGCGAAT+AGG 0.447920 7.4:+84812318 None:intergenic
ATCCAATATACTCCAAATGA+TGG 0.454687 7.4:-84812928 MS.gene91596:CDS
TAGAAGAAAACACGTTCTAC+TGG 0.455942 7.4:+84813096 None:intergenic
GAGATAGTTTCTGCGGATAG+AGG 0.456278 7.4:-84811935 MS.gene91596:CDS
AGCAATTCATGGAGTTGAAA+AGG 0.457057 7.4:-84812293 MS.gene91596:CDS
GTAAAGGTGGAATTGAAGTT+GGG 0.458078 7.4:-84811880 MS.gene91596:CDS
TTTGGATAAAATAAAGCAAA+TGG 0.463119 7.4:-84812422 MS.gene91596:CDS
TCTTGTTGATACAAAACCAT+TGG 0.464537 7.4:-84812173 MS.gene91596:CDS
AGTTAAAACCTCTATTAGAC+AGG 0.472806 7.4:-84812615 MS.gene91596:CDS
TTGGATTACATAAACGAAGA+TGG 0.480943 7.4:-84812154 MS.gene91596:CDS
TTGTTCATTTGGGAACATCT+TGG 0.485342 7.4:+84812531 None:intergenic
TTTAACTCTGGCAACAAAGT+TGG 0.496821 7.4:+84812631 None:intergenic
ATTGGTTGTTGAGATTCTAA+AGG 0.497127 7.4:+84812952 None:intergenic
TGGATTACATAAACGAAGAT+GGG 0.499627 7.4:-84812153 MS.gene91596:CDS
AGCTTTGATGAACATGGTTG+AGG 0.508130 7.4:+84812696 None:intergenic
CAGCTAAAGGGAGAAAGTCT+TGG 0.511543 7.4:+84812989 None:intergenic
AAATAATTATTTGGTAATGG+TGG 0.512227 7.4:+84812217 None:intergenic
AGCTTCTTGAAGAAGAAAGA+AGG 0.519085 7.4:+84813048 None:intergenic
ATTAGACTCTGCAATGATCA+AGG 0.522107 7.4:+84812900 None:intergenic
ACGAGACAAAGAAGCTTCAT+GGG 0.525539 7.4:+84812846 None:intergenic
TCTTCGTTTATGTAATCCAA+TGG 0.526428 7.4:+84812157 None:intergenic
ATCATCAAAGACAACGGACT+TGG 0.535734 7.4:-84812589 MS.gene91596:CDS
CTAAAGGGAGAAAGTCTTGG+AGG 0.549374 7.4:+84812992 None:intergenic
TAACCTTGCTCTGCAATCTA+CGG 0.549902 7.4:+84812243 None:intergenic
AGAAAACACGTTCTACTGGA+TGG 0.552911 7.4:+84813100 None:intergenic
TTTGCTCTCCGCCAAAGCAA+TGG 0.572654 7.4:+84811907 None:intergenic
GCTTCTTGAAGAAGAAAGAA+GGG 0.575781 7.4:+84813049 None:intergenic
ATATGTCAAAGTAAGTAAGA+GGG 0.583236 7.4:+84813136 None:intergenic
ATGATGAGTGCTTATTCCAA+TGG 0.600520 7.4:+84812738 None:intergenic
GCGGAGAGCAAAGATAGTAA+AGG 0.602811 7.4:-84811896 MS.gene91596:CDS
GAATCTGTCGATTCTAAGTG+TGG 0.604551 7.4:+84812814 None:intergenic
AGCCCAAGCTTTGATGAACA+TGG 0.605776 7.4:+84812690 None:intergenic
TATGTCAAAGTAAGTAAGAG+GGG 0.605853 7.4:+84813137 None:intergenic
GGTGTGAATGTGAATTTGGA+AGG 0.606669 7.4:+84813070 None:intergenic
TCACCGTAGATTGCAGAGCA+AGG 0.607885 7.4:-84812246 MS.gene91596:CDS
TGGTTGGGGAAGACCAACAA+AGG 0.614189 7.4:-84811960 MS.gene91596:CDS
AAGATGTTCCCAAATGAACA+AGG 0.625531 7.4:-84812529 MS.gene91596:CDS
TTGAAATGATGGGAGTTGCT+GGG 0.626589 7.4:-84812015 MS.gene91596:CDS
GAGAGCAAAGATAGTAAAGG+TGG 0.637310 7.4:-84811893 MS.gene91596:CDS
TTGGGGAAGACCAACAAAGG+TGG 0.638548 7.4:-84811957 MS.gene91596:CDS
TAAAGGGAGAAAGTCTTGGA+GGG 0.642807 7.4:+84812993 None:intergenic
GGATTACATAAACGAAGATG+GGG 0.660097 7.4:-84812152 MS.gene91596:CDS
AAAGGTGGAGATAGTTTCTG+CGG 0.670530 7.4:-84811942 MS.gene91596:CDS
GTTAAAACCTCTATTAGACA+GGG 0.687259 7.4:-84812614 MS.gene91596:CDS
AGGGAAATCATCAAAGACAA+CGG 0.689246 7.4:-84812595 MS.gene91596:CDS
GTGTGAATGTGAATTTGGAA+GGG 0.690990 7.4:+84813071 None:intergenic
CGAGACAAAGAAGCTTCATG+GGG 0.726125 7.4:+84812847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGATGATAAATGAAA+AGG - chr7.4:84812932-84812951 MS.gene91596:CDS 15.0%
!! ATAAAGATGATAAATGAAAA+GGG - chr7.4:84812933-84812952 MS.gene91596:CDS 15.0%
!! CAATTTCCAAAATAATTATT+TGG + chr7.4:84812825-84812844 None:intergenic 15.0%
!! CCAAAATAATTATTTGGTAA+TGG + chr7.4:84812819-84812838 None:intergenic 20.0%
!! TTTGGATAAAATAAAGCAAA+TGG - chr7.4:84812608-84812627 MS.gene91596:CDS 20.0%
!!! AAATAATTATTTGGTAATGG+TGG + chr7.4:84812816-84812835 None:intergenic 20.0%
!!! AAGTGAAAAATTTGAAATGA+TGG - chr7.4:84813004-84813023 MS.gene91596:CDS 20.0%
!!! ACAAAAGATGATAAAGATTT+TGG + chr7.4:84812681-84812700 None:intergenic 20.0%
!!! AGTGAAAAATTTGAAATGAT+GGG - chr7.4:84813005-84813024 MS.gene91596:CDS 20.0%
!!! ATTATTTTGGAAATTGTGTA+TGG - chr7.4:84812829-84812848 MS.gene91596:CDS 20.0%
!!! CCATTACCAAATAATTATTT+TGG - chr7.4:84812816-84812835 MS.gene91596:CDS 20.0%
!!! TTACTTACTTTGACATATTT+TGG - chr7.4:84811899-84811918 MS.gene91596:CDS 20.0%
!!! TTATTTTGGAAATTGTGTAT+GGG - chr7.4:84812830-84812849 MS.gene91596:CDS 20.0%
! AATATGTCAAAGTAAGTAAG+AGG + chr7.4:84811898-84811917 None:intergenic 25.0%
! ATATGTCAAAGTAAGTAAGA+GGG + chr7.4:84811897-84811916 None:intergenic 25.0%
! GTGATAAGTTCACAAATAAT+TGG - chr7.4:84812463-84812482 MS.gene91596:CDS 25.0%
!! TTTAGAACTTTGTTTGTTGA+AGG - chr7.4:84813203-84813222 MS.gene91596:CDS 25.0%
!! TTTGGAGTATATTGGATTAT+TGG + chr7.4:84812099-84812118 None:intergenic 25.0%
!!! TATTTTGGAAATTGTGTATG+GGG - chr7.4:84812831-84812850 MS.gene91596:CDS 25.0%
!!! TTATGAGATTGATTTTGGTT+GGG - chr7.4:84813055-84813074 MS.gene91596:CDS 25.0%
!!! TTTATGAGATTGATTTTGGT+TGG - chr7.4:84813054-84813073 MS.gene91596:CDS 25.0%
AAAAGGAGAAAGAGAAGTTT+GGG - chr7.4:84812754-84812773 MS.gene91596:CDS 30.0%
AGTTAAAACCTCTATTAGAC+AGG - chr7.4:84812415-84812434 MS.gene91596:CDS 30.0%
ATCCAATATACTCCAAATGA+TGG - chr7.4:84812102-84812121 MS.gene91596:CDS 30.0%
ATTGGTTGTTGAGATTCTAA+AGG + chr7.4:84812081-84812100 None:intergenic 30.0%
GTTAAAACCTCTATTAGACA+GGG - chr7.4:84812416-84812435 MS.gene91596:CDS 30.0%
TATGTCAAAGTAAGTAAGAG+GGG + chr7.4:84811896-84811915 None:intergenic 30.0%
TCTTCGTTTATGTAATCCAA+TGG + chr7.4:84812876-84812895 None:intergenic 30.0%
TCTTGTTGATACAAAACCAT+TGG - chr7.4:84812857-84812876 MS.gene91596:CDS 30.0%
TGGATTACATAAACGAAGAT+GGG - chr7.4:84812877-84812896 MS.gene91596:CDS 30.0%
TTGGATTACATAAACGAAGA+TGG - chr7.4:84812876-84812895 MS.gene91596:CDS 30.0%
TTTCGTTTCCTTGTTCATTT+GGG + chr7.4:84812512-84812531 None:intergenic 30.0%
! AAAAACCACTTTCTGGAAAA+AGG + chr7.4:84812272-84812291 None:intergenic 30.0%
! AAAACCACTTTCTGGAAAAA+GGG + chr7.4:84812271-84812290 None:intergenic 30.0%
! AAACGATTTTACCAGCTAAA+GGG + chr7.4:84812056-84812075 None:intergenic 30.0%
! TTTAACGTTGTTGTTGTTGT+TGG + chr7.4:84811821-84811840 None:intergenic 30.0%
! TTTTCGTTTCCTTGTTCATT+TGG + chr7.4:84812513-84812532 None:intergenic 30.0%
!! GGTGTTTATGAGATTGATTT+TGG - chr7.4:84813050-84813069 MS.gene91596:CDS 30.0%
!!! ACTTTGACATATTTTGGCTA+AGG - chr7.4:84811905-84811924 MS.gene91596:CDS 30.0%
!!! GTTGTTTTTTCAGTTGATGA+TGG + chr7.4:84811871-84811890 None:intergenic 30.0%
!!! TATGAGATTGATTTTGGTTG+GGG - chr7.4:84813056-84813075 MS.gene91596:CDS 30.0%
!!! TCTAATAGAGGTTTTAACTC+TGG + chr7.4:84812414-84812433 None:intergenic 30.0%
AACCATGTTCATCAAAGCTT+GGG - chr7.4:84812338-84812357 MS.gene91596:CDS 35.0%
AAGATGTTCCCAAATGAACA+AGG - chr7.4:84812501-84812520 MS.gene91596:CDS 35.0%
AGCAATTCATGGAGTTGAAA+AGG - chr7.4:84812737-84812756 MS.gene91596:CDS 35.0%
AGCTTCTTGAAGAAGAAAGA+AGG + chr7.4:84811985-84812004 None:intergenic 35.0%
AGGGAAATCATCAAAGACAA+CGG - chr7.4:84812435-84812454 MS.gene91596:CDS 35.0%
AGTAAAGGTGGAATTGAAGT+TGG - chr7.4:84813149-84813168 MS.gene91596:CDS 35.0%
ATCAAGGAAACTCCATCATT+TGG + chr7.4:84812117-84812136 None:intergenic 35.0%
ATGATGAGTGCTTATTCCAA+TGG + chr7.4:84812295-84812314 None:intergenic 35.0%
ATGATTTCCCTGTCTAATAG+AGG + chr7.4:84812426-84812445 None:intergenic 35.0%
ATTAGACTCTGCAATGATCA+AGG + chr7.4:84812133-84812152 None:intergenic 35.0%
CTTTAGCTGGTAAAATCGTT+TGG - chr7.4:84812055-84812074 MS.gene91596:CDS 35.0%
GAAAAGGAGAAAGAGAAGTT+TGG - chr7.4:84812753-84812772 MS.gene91596:CDS 35.0%
GAGAGTGAAGATTTGAGAAT+TGG + chr7.4:84812012-84812031 None:intergenic 35.0%
GCTTCTTGAAGAAGAAAGAA+GGG + chr7.4:84811984-84812003 None:intergenic 35.0%
GGATTACATAAACGAAGATG+GGG - chr7.4:84812878-84812897 MS.gene91596:CDS 35.0%
GTAAAGGTGGAATTGAAGTT+GGG - chr7.4:84813150-84813169 MS.gene91596:CDS 35.0%
GTGTGAATGTGAATTTGGAA+GGG + chr7.4:84811962-84811981 None:intergenic 35.0%
TAGAAGAAAACACGTTCTAC+TGG + chr7.4:84811937-84811956 None:intergenic 35.0%
TAGAGGTTTAACCATTGCTT+TGG - chr7.4:84813112-84813131 MS.gene91596:CDS 35.0%
TGTTTGGCAAAAGCAATTCA+TGG - chr7.4:84812726-84812745 MS.gene91596:CDS 35.0%
TTGTTCATTTGGGAACATCT+TGG + chr7.4:84812502-84812521 None:intergenic 35.0%
TTTAACTCTGGCAACAAAGT+TGG + chr7.4:84812402-84812421 None:intergenic 35.0%
! ATAACCCTTTTTCCAGAAAG+TGG - chr7.4:84812264-84812283 MS.gene91596:CDS 35.0%
! CAAACGATTTTACCAGCTAA+AGG + chr7.4:84812057-84812076 None:intergenic 35.0%
! CTCCATCATTTGGAGTATAT+TGG + chr7.4:84812107-84812126 None:intergenic 35.0%
! GAAAAACTTTGGTGTGTTCA+TGG + chr7.4:84811846-84811865 None:intergenic 35.0%
! TTTCTGGAAAAAGGGTTATC+TGG + chr7.4:84812263-84812282 None:intergenic 35.0%
!! AATGAAAAGGGTGTTCTTGA+TGG - chr7.4:84812945-84812964 MS.gene91596:CDS 35.0%
!! AGCAAATGGTGTTATCGAAA+TGG - chr7.4:84812622-84812641 MS.gene91596:CDS 35.0%
!! GCAAATGGTGTTATCGAAAT+GGG - chr7.4:84812623-84812642 MS.gene91596:CDS 35.0%
!! TGATGATGGAGGAAAAACTT+TGG + chr7.4:84811857-84811876 None:intergenic 35.0%
!!! GTTTTTTCAGTTGATGATGG+AGG + chr7.4:84811868-84811887 None:intergenic 35.0%
AAAGGTGGAGATAGTTTCTG+CGG - chr7.4:84813088-84813107 MS.gene91596:CDS 40.0%
AACGAGACAAAGAAGCTTCA+TGG + chr7.4:84812188-84812207 None:intergenic 40.0%
ACGAGACAAAGAAGCTTCAT+GGG + chr7.4:84812187-84812206 None:intergenic 40.0%
ACTCATCATGCTGTTCTTGA+TGG - chr7.4:84812306-84812325 MS.gene91596:CDS 40.0%
AGAAAACACGTTCTACTGGA+TGG + chr7.4:84811933-84811952 None:intergenic 40.0%
AGGTTTAACCATTGCTTTGG+CGG - chr7.4:84813115-84813134 MS.gene91596:CDS 40.0%
CAACCATGTTCATCAAAGCT+TGG - chr7.4:84812337-84812356 MS.gene91596:CDS 40.0%
CCAATGGAAAAACCACTTTC+TGG + chr7.4:84812279-84812298 None:intergenic 40.0%
GAAACTATCTCCACCTTTGT+TGG + chr7.4:84813086-84813105 None:intergenic 40.0%
GAGAGCAAAGATAGTAAAGG+TGG - chr7.4:84813137-84813156 MS.gene91596:CDS 40.0%
GGTGTGAATGTGAATTTGGA+AGG + chr7.4:84811963-84811982 None:intergenic 40.0%
GTTGCTGGGTCTAATAGATT+TGG - chr7.4:84813029-84813048 MS.gene91596:CDS 40.0%
TAAAGGGAGAAAGTCTTGGA+GGG + chr7.4:84812040-84812059 None:intergenic 40.0%
TAACCTTGCTCTGCAATCTA+CGG + chr7.4:84812790-84812809 None:intergenic 40.0%
TGCCAAACAAACAAGCGAAT+AGG + chr7.4:84812715-84812734 None:intergenic 40.0%
TGCCTATTCGCTTGTTTGTT+TGG - chr7.4:84812710-84812729 MS.gene91596:CDS 40.0%
! ACCTTTTGAACCAAAACTCG+AGG - chr7.4:84812548-84812567 MS.gene91596:CDS 40.0%
! AGCTTTGATGAACATGGTTG+AGG + chr7.4:84812337-84812356 None:intergenic 40.0%
! ATCATCAAAGACAACGGACT+TGG - chr7.4:84812441-84812460 MS.gene91596:CDS 40.0%
! CCAGAAAGTGGTTTTTCCAT+TGG - chr7.4:84812276-84812295 MS.gene91596:CDS 40.0%
! GAAGGGTGTGAATGTGAATT+TGG + chr7.4:84811967-84811986 None:intergenic 40.0%
! TTGAAATGATGGGAGTTGCT+GGG - chr7.4:84813015-84813034 MS.gene91596:CDS 40.0%
! TTTGAAATGATGGGAGTTGC+TGG - chr7.4:84813014-84813033 MS.gene91596:CDS 40.0%
!! GAATCTGTCGATTCTAAGTG+TGG + chr7.4:84812219-84812238 None:intergenic 40.0%
!!! TCCTCGAGTTTTGGTTCAAA+AGG + chr7.4:84812552-84812571 None:intergenic 40.0%
CAAGACTTTCTCCCTTTAGC+TGG - chr7.4:84812042-84812061 MS.gene91596:CDS 45.0%
CAAGCTCACACGTGAAGATT+TGG - chr7.4:84812590-84812609 MS.gene91596:CDS 45.0%
CAGCTAAAGGGAGAAAGTCT+TGG + chr7.4:84812044-84812063 None:intergenic 45.0%
CGAGACAAAGAAGCTTCATG+GGG + chr7.4:84812186-84812205 None:intergenic 45.0%
CTAAAGGGAGAAAGTCTTGG+AGG + chr7.4:84812041-84812060 None:intergenic 45.0%
GAGATAGTTTCTGCGGATAG+AGG - chr7.4:84813095-84813114 MS.gene91596:CDS 45.0%
GCGGAGAGCAAAGATAGTAA+AGG - chr7.4:84813134-84813153 MS.gene91596:CDS 45.0%
! AGCCCAAGCTTTGATGAACA+TGG + chr7.4:84812343-84812362 None:intergenic 45.0%
! CGAACATAGTCCTCGAGTTT+TGG + chr7.4:84812561-84812580 None:intergenic 45.0%
TCACCGTAGATTGCAGAGCA+AGG - chr7.4:84812784-84812803 MS.gene91596:CDS 50.0%
TGGTTGGGGAAGACCAACAA+AGG - chr7.4:84813070-84813089 MS.gene91596:CDS 50.0%
TTGGGGAAGACCAACAAAGG+TGG - chr7.4:84813073-84813092 MS.gene91596:CDS 50.0%
TTTGCTCTCCGCCAAAGCAA+TGG + chr7.4:84813126-84813145 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 84811811 84813241 84811811 ID=MS.gene91596
chr7.4 mRNA 84811811 84813241 84811811 ID=MS.gene91596.t1;Parent=MS.gene91596
chr7.4 exon 84811811 84813241 84811811 ID=MS.gene91596.t1.exon1;Parent=MS.gene91596.t1
chr7.4 CDS 84811811 84813241 84811811 ID=cds.MS.gene91596.t1;Parent=MS.gene91596.t1
Gene Sequence

>MS.gene91596

ATGGCTTCCAACAACAACAACAACGTTAAAATCCATGAACACACCAAAGTTTTTCCTCCATCATCAACTGAAAAAACAACAACCCCTCTTACTTACTTTGACATATTTTGGCTAAGGTTCCATCCAGTAGAACGTGTTTTCTTCTACACCCTTCCAAATTCACATTCACACCCTTCTTTCTTCTTCAAGAAGCTAGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCCAAGACTTTCTCCCTTTAGCTGGTAAAATCGTTTGGCCTTTAGAATCTCAACAACCAATAATCCAATATACTCCAAATGATGGAGTTTCCTTGATCATTGCAGAGTCTAATGCAGATTTCAATCATGTCACTGAAAATTCACCCCATGAAGCTTCTTTGTCTCGTTGTTTTGTACCACACTTAGAATCGACAGATTCTTTTGCTTCTATTATCTCAGTCCAGATAACCCTTTTTCCAGAAAGTGGTTTTTCCATTGGAATAAGCACTCATCATGCTGTTCTTGATGGAAAATCCTCAACCATGTTCATCAAAGCTTGGGCTTATCTATGCAACAAAACTATTGAAACAGAAGAACTGCCAACTTTGTTGCCAGAGTTAAAACCTCTATTAGACAGGGAAATCATCAAAGACAACGGACTTGGTGATAAGTTCACAAATAATTGGAGAGAGATCGTAACCAAGATGTTCCCAAATGAACAAGGAAACGAAAAATGCTTGAAGATTTTACCTTTTGAACCAAAACTCGAGGACTATGTTCGTGCTACATTCAAGCTCACACGTGAAGATTTGGATAAAATAAAGCAAATGGTGTTATCGAAATGGGAATTATTTGACACAAATGAATTGAATTCTAAGCCAAAATCTTTATCATCTTTTGTTCTCACTTGTGCCTATTCGCTTGTTTGTTTGGCAAAAGCAATTCATGGAGTTGAAAAGGAGAAAGAGAAGTTTGGGTTTGCATTCACCGTAGATTGCAGAGCAAGGTTAGAACCACCATTACCAAATAATTATTTTGGAAATTGTGTATGGGGACATCTTGTTGATACAAAACCATTGGATTACATAAACGAAGATGGGGTGTTTTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGAAAAGGGTGTTCTTGATGGAGCTAGTGATATGTTTGATAAATTCGCTTCTTTAGCAAGTGAAAAATTTGAAATGATGGGAGTTGCTGGGTCTAATAGATTTGGTGTTTATGAGATTGATTTTGGTTGGGGAAGACCAACAAAGGTGGAGATAGTTTCTGCGGATAGAGGTTTAACCATTGCTTTGGCGGAGAGCAAAGATAGTAAAGGTGGAATTGAAGTTGGGATTGTTAATAATAAGCATGTAATGAATCTCTTTAGAACTTTGTTTGTTGAAGGACTTTGCATTAATTGA
Protein sequence

>MS.gene91596.t1

MASNNNNNVKIHEHTKVFPPSSTEKTTTPLTYFDIFWLRFHPVERVFFYTLPNSHSHPSFFFKKLVPILKSSLSLTLQDFLPLAGKIVWPLESQQPIIQYTPNDGVSLIIAESNADFNHVTENSPHEASLSRCFVPHLESTDSFASIISVQITLFPESGFSIGISTHHAVLDGKSSTMFIKAWAYLCNKTIETEELPTLLPELKPLLDREIIKDNGLGDKFTNNWREIVTKMFPNEQGNEKCLKILPFEPKLEDYVRATFKLTREDLDKIKQMVLSKWELFDTNELNSKPKSLSSFVLTCAYSLVCLAKAIHGVEKEKEKFGFAFTVDCRARLEPPLPNNYFGNCVWGHLVDTKPLDYINEDGVFLVAKCIHEKIKMINEKGVLDGASDMFDKFASLASEKFEMMGVAGSNRFGVYEIDFGWGRPTKVEIVSADRGLTIALAESKDSKGGIEVGIVNNKHVMNLFRTLFVEGLCIN