AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021914

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021914.t1 MTR_7g014610 83.193 476 80 0 1 476 1 476 0.0 807
MS.gene021914.t1 MTR_7g014620 83.442 459 47 1 19 477 5 434 0.0 742
MS.gene021914.t1 MTR_7g014160 74.895 474 116 3 4 477 5 475 0.0 734
MS.gene021914.t1 MTR_7g014200 71.459 473 125 4 4 475 5 468 0.0 694
MS.gene021914.t1 MTR_7g013850 58.607 488 185 10 1 477 1 482 0.0 533
MS.gene021914.t1 MTR_7g014630 73.490 298 77 2 2 298 3 299 4.65e-151 435
MS.gene021914.t1 MTR_7g014230 42.412 481 242 13 9 478 5 461 9.42e-114 343
MS.gene021914.t1 MTR_7g014330 41.545 479 245 12 9 476 3 457 6.84e-113 341
MS.gene021914.t1 MTR_6g015320 41.684 475 242 13 8 475 8 454 5.86e-110 333
MS.gene021914.t1 MTR_7g014250 40.592 473 256 12 9 475 3 456 1.19e-105 323
MS.gene021914.t1 MTR_6g015815 40.166 483 258 12 1 475 1 460 3.68e-105 322
MS.gene021914.t1 MTR_6g015850 39.506 486 254 13 1 475 1 457 1.30e-103 317
MS.gene021914.t1 MTR_6g015315 40.000 470 256 11 9 475 6 452 3.92e-102 313
MS.gene021914.t1 MTR_6g015830 39.712 486 256 16 1 475 1 460 2.51e-100 309
MS.gene021914.t1 MTR_7g014670 70.833 192 53 2 284 475 71 259 6.46e-97 293
MS.gene021914.t1 MTR_7g014180 73.684 171 45 0 4 174 3 173 6.51e-83 254
MS.gene021914.t1 MTR_7g014360 36.364 407 210 9 78 476 22 387 4.54e-77 246
MS.gene021914.t1 MTR_3g028210 35.625 480 274 14 8 475 8 464 1.65e-75 245
MS.gene021914.t1 MTR_2g089765 33.671 493 276 14 8 475 16 482 2.22e-74 243
MS.gene021914.t1 MTR_7g015860 33.265 487 256 12 10 468 8 453 2.76e-65 218
MS.gene021914.t1 MTR_2g089670 33.045 463 272 14 25 475 41 477 2.82e-65 218
MS.gene021914.t1 MTR_8g012750 31.737 501 285 15 8 477 3 477 2.49e-63 213
MS.gene021914.t1 MTR_3g087640 31.902 489 285 15 9 475 10 472 1.13e-60 206
MS.gene021914.t1 MTR_2g089735 32.294 449 263 12 42 475 39 461 3.15e-59 202
MS.gene021914.t1 MTR_2g089755 32.618 466 268 14 29 475 37 475 5.73e-57 196
MS.gene021914.t1 MTR_2g089650 32.653 490 279 17 5 475 6 463 8.48e-57 196
MS.gene021914.t1 MTR_6g015310 33.081 396 185 12 64 453 12 333 1.56e-54 186
MS.gene021914.t1 MTR_7g014310 30.636 346 171 8 116 460 31 308 1.71e-37 140
MS.gene021914.t1 MTR_2g089665 27.862 463 199 14 8 458 2 341 2.25e-37 140
MS.gene021914.t1 MTR_3g435300 30.070 286 167 8 9 280 4 270 4.32e-30 118
MS.gene021914.t1 MTR_7g086000 24.699 498 309 17 7 478 3 460 8.13e-23 101
MS.gene021914.t1 MTR_5g081960 24.167 480 312 19 16 464 14 472 2.13e-22 100
MS.gene021914.t1 MTR_8g096530 22.532 466 313 12 4 467 3 422 9.82e-22 97.8
MS.gene021914.t1 MTR_8g075610 24.304 395 237 14 45 427 30 374 3.58e-21 95.9
MS.gene021914.t1 MTR_3g026950 24.018 433 271 17 63 471 49 447 5.10e-20 92.8
MS.gene021914.t1 MTR_2g015430 22.654 437 290 13 8 440 2 394 7.00e-20 92.4
MS.gene021914.t1 MTR_4g127650 23.640 478 310 16 15 475 17 456 7.08e-20 92.4
MS.gene021914.t1 MTR_4g022800 25.106 470 277 19 17 465 14 429 3.16e-18 87.4
MS.gene021914.t1 MTR_4g097090 23.285 481 307 16 16 475 17 456 3.69e-18 87.4
MS.gene021914.t1 MTR_3g098980 24.010 404 264 11 67 467 65 428 5.06e-18 86.7
MS.gene021914.t1 MTR_8g467580 23.820 445 252 16 7 427 4 385 6.58e-18 86.3
MS.gene021914.t1 MTR_3g070170 24.845 483 307 18 4 464 8 456 1.42e-17 85.5
MS.gene021914.t1 MTR_2g064495 21.689 438 289 14 45 473 39 431 2.17e-17 84.7
MS.gene021914.t1 MTR_4g022825 23.684 456 267 18 27 457 22 421 3.25e-17 84.3
MS.gene021914.t1 MTR_4g094828 22.553 470 278 15 25 465 25 437 5.54e-17 83.6
MS.gene021914.t1 MTR_7g014205 35.652 115 52 3 328 437 17 114 7.16e-17 77.0
MS.gene021914.t1 MTR_7g014210 37.963 108 65 2 331 437 24 130 6.42e-16 75.9
MS.gene021914.t1 MTR_7g027175 22.906 406 267 14 67 467 67 431 1.34e-15 79.3
MS.gene021914.t1 MTR_8g079710 23.093 472 278 20 27 472 27 439 1.56e-15 79.0
MS.gene021914.t1 MTR_7g084940 24.842 475 296 17 8 471 16 440 2.31e-15 78.6
MS.gene021914.t1 MTR_3g101960 23.990 421 245 19 29 426 29 397 2.40e-15 78.6
MS.gene021914.t1 MTR_4g022670 25.630 476 274 21 17 469 14 432 3.15e-15 78.2
MS.gene021914.t1 MTR_3g102020 24.476 429 238 18 32 431 32 403 5.48e-15 77.4
MS.gene021914.t1 MTR_3g049150 23.908 435 262 19 64 471 51 443 6.89e-15 77.0
MS.gene021914.t1 MTR_4g022290 23.799 458 257 16 27 455 28 422 1.12e-14 76.3
MS.gene021914.t1 MTR_7g084910 23.202 431 264 14 3 428 12 380 2.85e-14 75.1
MS.gene021914.t1 MTR_3g102010 23.465 456 291 21 29 469 30 442 5.94e-14 74.3
MS.gene021914.t1 MTR_8g467590 21.622 481 296 14 6 465 3 423 1.12e-13 73.2
MS.gene021914.t1 MTR_7g056087 22.951 488 304 20 6 473 2 437 1.62e-13 72.8
MS.gene021914.t1 MTR_0190s0020 24.939 413 235 19 68 457 63 423 1.77e-13 72.8
MS.gene021914.t1 MTR_7g014340 53.521 71 27 2 9 76 3 70 2.37e-13 66.2
MS.gene021914.t1 MTR_8g041770 24.444 450 273 19 26 466 27 418 4.70e-13 71.2
MS.gene021914.t1 MTR_7g026860 24.786 468 277 19 17 465 14 425 1.72e-12 69.7
MS.gene021914.t1 MTR_4g094842 24.122 427 242 14 68 465 62 435 1.76e-12 69.7
MS.gene021914.t1 MTR_2g007880 22.897 428 242 16 67 467 73 439 2.17e-12 69.3
MS.gene021914.t1 MTR_7g085990 21.889 434 282 13 68 475 55 457 2.29e-12 69.3
MS.gene021914.t1 MTR_7g014220 57.407 54 20 1 25 78 14 64 5.02e-12 62.0
MS.gene021914.t1 MTR_3g435290 48.750 80 36 2 399 475 40 117 8.44e-12 62.8
MS.gene021914.t1 MTR_6g053810 23.481 362 233 12 8 361 11 336 3.86e-11 65.5
MS.gene021914.t1 MTR_7g114520 23.569 297 188 8 54 346 52 313 5.66e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021914.t1 AT5G39050 39.623 477 262 15 7 475 9 467 1.42e-95 297
MS.gene021914.t1 AT5G39080 39.744 468 253 14 7 465 4 451 2.58e-95 296
MS.gene021914.t1 AT3G29670 38.581 451 247 10 27 475 27 449 3.12e-88 278
MS.gene021914.t1 AT3G29635 36.245 458 261 11 26 478 26 457 1.59e-85 271
MS.gene021914.t1 AT5G39090 37.174 460 254 13 20 475 19 447 3.90e-85 269
MS.gene021914.t1 AT3G29590 35.699 479 265 13 5 475 5 448 3.20e-84 267
MS.gene021914.t1 AT3G29680 34.924 461 258 9 20 471 16 443 4.80e-78 251
MS.gene021914.t1 AT5G61160 33.547 468 283 10 8 471 3 446 3.85e-77 249
MS.gene021914.t1 AT1G03940 32.444 487 278 16 9 475 9 464 1.48e-65 219
MS.gene021914.t1 AT1G03495 33.333 348 191 14 13 347 15 334 4.86e-44 158
MS.gene021914.t1 AT5G23940 25.316 474 301 20 8 465 3 439 1.74e-22 100
MS.gene021914.t1 AT5G57840 24.017 483 305 21 8 475 3 438 2.67e-20 93.6
MS.gene021914.t1 AT5G41040 23.133 415 279 14 62 473 79 456 3.28e-19 90.5
MS.gene021914.t1 AT5G41040 23.133 415 279 14 62 473 63 440 3.78e-19 90.1
MS.gene021914.t1 AT3G29720 31.132 212 120 6 105 311 26 216 2.13e-18 84.3
MS.gene021914.t1 AT3G29690 30.719 153 98 3 324 475 33 178 1.33e-15 75.5
MS.gene021914.t1 AT5G67150 22.998 487 300 17 16 478 13 448 8.07e-15 77.0
MS.gene021914.t1 AT3G48720 22.145 429 286 14 42 467 41 424 1.52e-14 75.9
MS.gene021914.t1 AT1G65450 23.894 452 279 17 40 476 49 450 2.91e-13 72.0
MS.gene021914.t1 AT3G47170 24.172 302 197 10 48 345 57 330 5.24e-13 71.2
MS.gene021914.t1 AT5G63560 22.328 421 269 16 12 427 13 380 2.46e-12 69.3
MS.gene021914.t1 AT5G07850 22.321 448 288 14 1 431 1 405 4.99e-12 68.2
MS.gene021914.t1 AT5G01210 23.285 481 298 17 16 464 14 455 1.16e-11 67.4

Find 94 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACCAAATAACTATTT+TGG 0.143398 7.1:-81781367 MS.gene021914:CDS
AGCAAATGGTATTATCAAAA+TGG 0.196221 7.1:-81781561 MS.gene021914:CDS
CAATTTCCAAAATAGTTATT+TGG 0.203936 7.1:+81781361 None:intergenic
CGAACTGAGTCTTCGAGTTT+TGG 0.230080 7.1:+81781625 None:intergenic
GAGAGTGAAGATTTGAGAAT+TGG 0.258335 7.1:+81782180 None:intergenic
TAACCTTGATCTGCAATCTA+TGG 0.291297 7.1:+81781396 None:intergenic
TTTGGGGTATGTTGGATTAT+TGG 0.292562 7.1:+81782093 None:intergenic
GAAGGGTGTGATTGGGAACT+TGG 0.294736 7.1:+81782225 None:intergenic
CTTTAGCTGGTAAGATCATT+TGG 0.302896 7.1:-81782134 MS.gene021914:CDS
CCAAAATAGTTATTTGGTAT+TGG 0.316078 7.1:+81781367 None:intergenic
GGTGTTTATGAGACTGATTT+TGG 0.320974 7.1:-81781130 MS.gene021914:CDS
TGAGAATTGGAACAAGCTTT+TGG 0.323976 7.1:+81782193 None:intergenic
AATGTAACACCAAGTTCATT+TGG 0.336977 7.1:+81781733 None:intergenic
GCAAGGAAACACCATCATTT+GGG 0.342122 7.1:+81782076 None:intergenic
AGGATGTTCCCAAAGGAAAA+AGG 0.350929 7.1:-81781682 MS.gene021914:CDS
AGCAAGGAAACACCATCATT+TGG 0.361755 7.1:+81782075 None:intergenic
TTTAGCACTTTCTTTATTGA+AGG 0.364318 7.1:-81780977 MS.gene021914:CDS
CAAAGTTGGTGATTCTTCAT+TGG 0.372965 7.1:+81781801 None:intergenic
TGTTACGCAAAAGCGATTCA+TGG 0.376237 7.1:-81781457 MS.gene021914:CDS
AGAAGAAAGAAGGGTGTGAT+TGG 0.380612 7.1:+81782217 None:intergenic
AACCATGTTCATCAAAGCTT+GGG 0.382728 7.1:-81781851 MS.gene021914:CDS
AGTTAGAACCTCTATTCAAC+AGG 0.385308 7.1:-81781771 MS.gene021914:CDS
ACACACCATGCTATTCTTGA+TGG 0.393789 7.1:-81781883 MS.gene021914:CDS
TTTCAAGGATCTATTAATGA+TGG 0.395238 7.1:-81781223 MS.gene021914:CDS
GAAAATGGTGGGGTTGAAAT+TGG 0.399120 7.1:-81781031 MS.gene021914:CDS
ATAAAGATGATAAATGATAA+TGG 0.401064 7.1:-81781250 MS.gene021914:CDS
GTAGATAGAGGTTTAATCAT+TGG 0.402882 7.1:-81781073 MS.gene021914:CDS
TAGAGGTTTAATCATTGGTT+TGG 0.406679 7.1:-81781068 MS.gene021914:CDS
TCTTTGATAAATGAGGGATT+TGG 0.413699 7.1:-81781184 MS.gene021914:CDS
CAACCATGTTCATCAAAGCT+TGG 0.418659 7.1:-81781852 MS.gene021914:CDS
CACCATCATTTGGGGTATGT+TGG 0.420080 7.1:+81782085 None:intergenic
CTTCGACATCCTATGGCTAA+AGG 0.421795 7.1:-81782283 MS.gene021914:CDS
ATATAATTCTTTGATAAATG+AGG 0.421850 7.1:-81781191 MS.gene021914:CDS
GATTATTGGTTGTTGAGATT+CGG 0.435376 7.1:+81782107 None:intergenic
AAGGACTTTGCTTAATTGAC+AGG 0.435515 7.1:-81780958 MS.gene021914:CDS
GCAGAGAGCAAAGATGAAAA+TGG 0.440966 7.1:-81781046 MS.gene021914:CDS
ATGATTTCCCTGTTGAATAG+AGG 0.441428 7.1:+81781763 None:intergenic
TGTTCTTAATAAGCATGTAA+TGG 0.445189 7.1:-81781005 MS.gene021914:CDS
AACCTTGATCTGCAATCTAT+GGG 0.445561 7.1:+81781397 None:intergenic
ATGTAACACCAAGTTCATTT+GGG 0.446809 7.1:+81781734 None:intergenic
GCAAATGGTATTATCAAAAT+GGG 0.448722 7.1:-81781560 MS.gene021914:CDS
AAATAGTTATTTGGTATTGG+TGG 0.459010 7.1:+81781370 None:intergenic
TCCCCATAGATTGCAGATCA+AGG 0.465293 7.1:-81781399 MS.gene021914:CDS
ATCAAAGACCCAAATGAACT+TGG 0.475521 7.1:-81781742 MS.gene021914:CDS
GAAGAAAGAAGGGTGTGATT+GGG 0.478690 7.1:+81782218 None:intergenic
AAGGGTGTGATTGGGAACTT+GGG 0.480787 7.1:+81782226 None:intergenic
GAACACTTTCTCCCTTTAGC+TGG 0.481894 7.1:-81782147 MS.gene021914:CDS
CAAATGATCTTACCAGCTAA+AGG 0.483763 7.1:+81782135 None:intergenic
CAATAAAGAAAGTGCTAAAG+AGG 0.486641 7.1:+81780981 None:intergenic
TCACTTTCTTCGACATCCTA+TGG 0.488257 7.1:-81782290 MS.gene021914:CDS
TTTGAACAAGATAAAGCAAA+TGG 0.489572 7.1:-81781575 MS.gene021914:CDS
TATAATTCTTTGATAAATGA+GGG 0.491536 7.1:-81781190 MS.gene021914:CDS
GAGCAACATTGATGTGTTCA+TGG 0.496515 7.1:+81782346 None:intergenic
GAGATGGTGTCGGTAGATAG+AGG 0.497638 7.1:-81781085 MS.gene021914:CDS
AAGAATAGCATGGTGTGTAC+TGG 0.504553 7.1:+81781888 None:intergenic
AAATGATCTTACCAGCTAAA+GGG 0.506511 7.1:+81782136 None:intergenic
TTCAAGGATCTATTAATGAT+GGG 0.510130 7.1:-81781222 MS.gene021914:CDS
AGCGATTCATGGAGCTGCTA+AGG 0.521717 7.1:-81781446 MS.gene021914:CDS
ACAAAGGTTGATAAAGATTG+TGG 0.527106 7.1:+81781505 None:intergenic
ATCCAACATACCCCAAATGA+TGG 0.527410 7.1:-81782087 MS.gene021914:CDS
TAGAAGAAAACACGTTCGAC+TGG 0.539516 7.1:+81782255 None:intergenic
TCTAACTCAGGTAACAAAGT+TGG 0.547505 7.1:+81781787 None:intergenic
GTGTGATTGGGAACTTGGGA+GGG 0.559809 7.1:+81782230 None:intergenic
CTGGATACACCTTTAGCCAT+AGG 0.560244 7.1:+81782274 None:intergenic
GTGGTTTGCGTTGATGATTG+AGG 0.561601 7.1:+81782324 None:intergenic
TTGAATAGAGGTTCTAACTC+AGG 0.567057 7.1:+81781775 None:intergenic
TCTTCTTCTATAAAGTCCGA+TGG 0.576895 7.1:+81781310 None:intergenic
CTAAAGGGAGAAAGTGTTCG+AGG 0.579709 7.1:+81782151 None:intergenic
TTTGCACTGAGATCTTATCC+AGG 0.585974 7.1:-81781702 MS.gene021914:CDS
AGAGCAAAGATGAAAATGGT+GGG 0.589440 7.1:-81781042 MS.gene021914:CDS
AGCCCAAGCTTTGATGAACA+TGG 0.596193 7.1:+81781849 None:intergenic
GTTGGACTCTGCAATGAGCA+AGG 0.605899 7.1:+81782059 None:intergenic
TATAAAAGAACGAGACAAAG+AGG 0.615357 7.1:+81781996 None:intergenic
GGTGTGATTGGGAACTTGGG+AGG 0.616734 7.1:+81782229 None:intergenic
ATTGGTTGTTGAGATTCGGA+AGG 0.623030 7.1:+81782111 None:intergenic
GAGAGCAAAGATGAAAATGG+TGG 0.623496 7.1:-81781043 MS.gene021914:CDS
GACTTGATCGAAATCAACGT+TGG 0.624305 7.1:+81782041 None:intergenic
TTGCTTAATTGACAGGAGAG+AGG 0.626417 7.1:-81780951 MS.gene021914:CDS
GAAAGTGAGAGGGATTGTTG+TGG 0.628565 7.1:+81782305 None:intergenic
GAATCTGCGGATTCCAAATG+CGG 0.634455 7.1:+81781973 None:intergenic
GGATGTCGAAGAAAGTGAGA+GGG 0.639274 7.1:+81782295 None:intergenic
AATAGAAGCAAAAGAATCTG+CGG 0.642981 7.1:+81781960 None:intergenic
CGAGACAAAGAGGCTTCATG+AGG 0.644372 7.1:+81782006 None:intergenic
CTTATCCAGGATGTTCCCAA+AGG 0.644668 7.1:-81781689 MS.gene021914:CDS
ATGGTGTGTACTGGTTCCAA+TGG 0.651004 7.1:+81781897 None:intergenic
AGGATGTCGAAGAAAGTGAG+AGG 0.651712 7.1:+81782294 None:intergenic
TAAAGGGAGAAAGTGTTCGA+GGG 0.656830 7.1:+81782152 None:intergenic
CAAGGAAACACCATCATTTG+GGG 0.665742 7.1:+81782077 None:intergenic
TTCAAGCGTGAGTTTGAACG+TGG 0.666208 7.1:+81781600 None:intergenic
TCGGACTTTATAGAAGAAGA+CGG 0.669215 7.1:-81781307 MS.gene021914:CDS
ACCTTGATCTGCAATCTATG+GGG 0.692544 7.1:+81781398 None:intergenic
GTTAGAACCTCTATTCAACA+GGG 0.701022 7.1:-81781770 MS.gene021914:CDS
GAGCAAAGATGAAAATGGTG+GGG 0.708424 7.1:-81781041 MS.gene021914:CDS
ATAAGCACAAGTGAGAACAA+AGG 0.714865 7.1:+81781489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGATGATAAATGATAA+TGG - chr7.1:81782062-81782081 MS.gene021914:CDS 15.0%
!! ATATAATTCTTTGATAAATG+AGG - chr7.1:81782121-81782140 MS.gene021914:CDS 15.0%
!! TATAATTCTTTGATAAATGA+GGG - chr7.1:81782122-81782141 MS.gene021914:CDS 15.0%
!! CAATTTCCAAAATAGTTATT+TGG + chr7.1:81781954-81781973 None:intergenic 20.0%
!!! AAAAACCACTTTTTTGAAAA+AGG + chr7.1:81781395-81781414 None:intergenic 20.0%
!!! AAAACCACTTTTTTGAAAAA+GGG + chr7.1:81781394-81781413 None:intergenic 20.0%
!!! TTTTATTGATACAAATCCAT+CGG - chr7.1:81781986-81782005 MS.gene021914:CDS 20.0%
! AGCAAATGGTATTATCAAAA+TGG - chr7.1:81781751-81781770 MS.gene021914:CDS 25.0%
! CCAAAATAGTTATTTGGTAT+TGG + chr7.1:81781948-81781967 None:intergenic 25.0%
! GCAAATGGTATTATCAAAAT+GGG - chr7.1:81781752-81781771 MS.gene021914:CDS 25.0%
! TGTTCTTAATAAGCATGTAA+TGG - chr7.1:81782307-81782326 MS.gene021914:CDS 25.0%
! TTCAAGGATCTATTAATGAT+GGG - chr7.1:81782090-81782109 MS.gene021914:CDS 25.0%
! TTTAGCACTTTCTTTATTGA+AGG - chr7.1:81782335-81782354 MS.gene021914:CDS 25.0%
! TTTCAAGGATCTATTAATGA+TGG - chr7.1:81782089-81782108 MS.gene021914:CDS 25.0%
! TTTGAACAAGATAAAGCAAA+TGG - chr7.1:81781737-81781756 MS.gene021914:CDS 25.0%
!! AAATAGTTATTTGGTATTGG+TGG + chr7.1:81781945-81781964 None:intergenic 25.0%
!! CCAATACCAAATAACTATTT+TGG - chr7.1:81781945-81781964 MS.gene021914:CDS 25.0%
!!! AATGATAATGGTGTTTTTCA+AGG - chr7.1:81782074-81782093 MS.gene021914:CDS 25.0%
!!! ACTATTTTGGAAATTGTGTT+TGG - chr7.1:81781958-81781977 MS.gene021914:CDS 25.0%
!!! ATAACCCTTTTTCAAAAAAG+TGG - chr7.1:81781387-81781406 MS.gene021914:CDS 25.0%
!!! CTATTTTGGAAATTGTGTTT+GGG - chr7.1:81781959-81781978 MS.gene021914:CDS 25.0%
!!! TATTTTGGAAATTGTGTTTG+GGG - chr7.1:81781960-81781979 MS.gene021914:CDS 25.0%
AAATGATCTTACCAGCTAAA+GGG + chr7.1:81781179-81781198 None:intergenic 30.0%
AATAGAAGCAAAAGAATCTG+CGG + chr7.1:81781355-81781374 None:intergenic 30.0%
AATGTAACACCAAGTTCATT+TGG + chr7.1:81781582-81781601 None:intergenic 30.0%
ATGTAACACCAAGTTCATTT+GGG + chr7.1:81781581-81781600 None:intergenic 30.0%
GTAGATAGAGGTTTAATCAT+TGG - chr7.1:81782239-81782258 MS.gene021914:CDS 30.0%
TATAAAAGAACGAGACAAAG+AGG + chr7.1:81781319-81781338 None:intergenic 30.0%
TCTTTGATAAATGAGGGATT+TGG - chr7.1:81782128-81782147 MS.gene021914:CDS 30.0%
! ATTTTCCATCAAGAATAGCA+TGG + chr7.1:81781437-81781456 None:intergenic 30.0%
! CAAAAAAGTGGTTTTTCCAT+TGG - chr7.1:81781399-81781418 MS.gene021914:CDS 30.0%
! GATTATTGGTTGTTGAGATT+CGG + chr7.1:81781208-81781227 None:intergenic 30.0%
! TAGAGGTTTAATCATTGGTT+TGG - chr7.1:81782244-81782263 MS.gene021914:CDS 30.0%
!! ACAAAGGTTGATAAAGATTG+TGG + chr7.1:81781810-81781829 None:intergenic 30.0%
!! ATTTTGGAAATTGTGTTTGG+GGG - chr7.1:81781961-81781980 MS.gene021914:CDS 30.0%
!! CAATAAAGAAAGTGCTAAAG+AGG + chr7.1:81782334-81782353 None:intergenic 30.0%
!! TTTATGAGACTGATTTTGGT+TGG - chr7.1:81782186-81782205 MS.gene021914:CDS 30.0%
!!! TTATGAGACTGATTTTGGTT+GGG - chr7.1:81782187-81782206 MS.gene021914:CDS 30.0%
AACCATGTTCATCAAAGCTT+GGG - chr7.1:81781461-81781480 MS.gene021914:CDS 35.0%
AACCTTGATCTGCAATCTAT+GGG + chr7.1:81781918-81781937 None:intergenic 35.0%
AAGGACTTTGCTTAATTGAC+AGG - chr7.1:81782354-81782373 MS.gene021914:CDS 35.0%
AGAGCAAAGATGAAAATGGT+GGG - chr7.1:81782270-81782289 MS.gene021914:CDS 35.0%
AGTTAGAACCTCTATTCAAC+AGG - chr7.1:81781541-81781560 MS.gene021914:CDS 35.0%
ATAAGCACAAGTGAGAACAA+AGG + chr7.1:81781826-81781845 None:intergenic 35.0%
ATCAAAGACCCAAATGAACT+TGG - chr7.1:81781570-81781589 MS.gene021914:CDS 35.0%
ATGATTTCCCTGTTGAATAG+AGG + chr7.1:81781552-81781571 None:intergenic 35.0%
CAAATGATCTTACCAGCTAA+AGG + chr7.1:81781180-81781199 None:intergenic 35.0%
CTTTAGCTGGTAAGATCATT+TGG - chr7.1:81781178-81781197 MS.gene021914:CDS 35.0%
GAGAGTGAAGATTTGAGAAT+TGG + chr7.1:81781135-81781154 None:intergenic 35.0%
GTTAGAACCTCTATTCAACA+GGG - chr7.1:81781542-81781561 MS.gene021914:CDS 35.0%
TAACCTTGATCTGCAATCTA+TGG + chr7.1:81781919-81781938 None:intergenic 35.0%
TCGGACTTTATAGAAGAAGA+CGG - chr7.1:81782005-81782024 MS.gene021914:CDS 35.0%
TCTAACTCAGGTAACAAAGT+TGG + chr7.1:81781528-81781547 None:intergenic 35.0%
TCTTCTTCTATAAAGTCCGA+TGG + chr7.1:81782005-81782024 None:intergenic 35.0%
! GTTCGTTTCCTTTTTCCTTT+GGG + chr7.1:81781641-81781660 None:intergenic 35.0%
! TCGTTCTTTTATACCGCATT+TGG - chr7.1:81781326-81781345 MS.gene021914:CDS 35.0%
! TGAGAATTGGAACAAGCTTT+TGG + chr7.1:81781122-81781141 None:intergenic 35.0%
! TGTTCGTTTCCTTTTTCCTT+TGG + chr7.1:81781642-81781661 None:intergenic 35.0%
! TTGAATAGAGGTTCTAACTC+AGG + chr7.1:81781540-81781559 None:intergenic 35.0%
! TTTGGGGTATGTTGGATTAT+TGG + chr7.1:81781222-81781241 None:intergenic 35.0%
!! AGCTTTTGGAAGAAGAAAGA+AGG + chr7.1:81781108-81781127 None:intergenic 35.0%
!! CAAAGTTGGTGATTCTTCAT+TGG + chr7.1:81781514-81781533 None:intergenic 35.0%
!! GCTTTTGGAAGAAGAAAGAA+GGG + chr7.1:81781107-81781126 None:intergenic 35.0%
!! GGTGTTTATGAGACTGATTT+TGG - chr7.1:81782182-81782201 MS.gene021914:CDS 35.0%
!!! AATGAGGGATTTGGTGTTTT+TGG - chr7.1:81782137-81782156 MS.gene021914:CDS 35.0%
!!! ATTTGGTGTTTTTGGAGTTG+GGG - chr7.1:81782145-81782164 MS.gene021914:CDS 35.0%
!!! GATTTGGTGTTTTTGGAGTT+GGG - chr7.1:81782144-81782163 MS.gene021914:CDS 35.0%
!!! TATGAGACTGATTTTGGTTG+GGG - chr7.1:81782188-81782207 MS.gene021914:CDS 35.0%
AAAAAAGGTGGAGATGGTGT+CGG - chr7.1:81782217-81782236 MS.gene021914:CDS 40.0%
AAGAATAGCATGGTGTGTAC+TGG + chr7.1:81781427-81781446 None:intergenic 40.0%
ACACACCATGCTATTCTTGA+TGG - chr7.1:81781429-81781448 MS.gene021914:CDS 40.0%
ACCTTGATCTGCAATCTATG+GGG + chr7.1:81781917-81781936 None:intergenic 40.0%
AGCAAGGAAACACCATCATT+TGG + chr7.1:81781240-81781259 None:intergenic 40.0%
AGGATGTTCCCAAAGGAAAA+AGG - chr7.1:81781630-81781649 MS.gene021914:CDS 40.0%
ATCCAACATACCCCAAATGA+TGG - chr7.1:81781225-81781244 MS.gene021914:CDS 40.0%
ATTGGTTGTTGAGATTCGGA+AGG + chr7.1:81781204-81781223 None:intergenic 40.0%
CAACCATGTTCATCAAAGCT+TGG - chr7.1:81781460-81781479 MS.gene021914:CDS 40.0%
CAAGGAAACACCATCATTTG+GGG + chr7.1:81781238-81781257 None:intergenic 40.0%
GACTTGATCGAAATCAACGT+TGG + chr7.1:81781274-81781293 None:intergenic 40.0%
GAGAGCAAAGATGAAAATGG+TGG - chr7.1:81782269-81782288 MS.gene021914:CDS 40.0%
GAGCAAAGATGAAAATGGTG+GGG - chr7.1:81782271-81782290 MS.gene021914:CDS 40.0%
GAGCAACATTGATGTGTTCA+TGG + chr7.1:81780969-81780988 None:intergenic 40.0%
GCAAGGAAACACCATCATTT+GGG + chr7.1:81781239-81781258 None:intergenic 40.0%
GCAGAGAGCAAAGATGAAAA+TGG - chr7.1:81782266-81782285 MS.gene021914:CDS 40.0%
GTTGGGGGGTCTAATAAATT+TGG - chr7.1:81782161-81782180 MS.gene021914:CDS 40.0%
TAGAAGAAAACACGTTCGAC+TGG + chr7.1:81781060-81781079 None:intergenic 40.0%
TCACTTTCTTCGACATCCTA+TGG - chr7.1:81781022-81781041 MS.gene021914:CDS 40.0%
TGTTACGCAAAAGCGATTCA+TGG - chr7.1:81781855-81781874 MS.gene021914:CDS 40.0%
TTGCTTAATTGACAGGAGAG+AGG - chr7.1:81782361-81782380 MS.gene021914:CDS 40.0%
TTTGCACTGAGATCTTATCC+AGG - chr7.1:81781610-81781629 MS.gene021914:CDS 40.0%
! AGAAGAAAGAAGGGTGTGAT+TGG + chr7.1:81781098-81781117 None:intergenic 40.0%
! GAAAATGGTGGGGTTGAAAT+TGG - chr7.1:81782281-81782300 MS.gene021914:CDS 40.0%
! GAAGAAAGAAGGGTGTGATT+GGG + chr7.1:81781097-81781116 None:intergenic 40.0%
!! TAAAGGGAGAAAGTGTTCGA+GGG + chr7.1:81781163-81781182 None:intergenic 40.0%
!! TTTTTCCTTTGGGAACATCC+TGG + chr7.1:81781631-81781650 None:intergenic 40.0%
!!! GGATTTGGTGTTTTTGGAGT+TGG - chr7.1:81782143-81782162 MS.gene021914:CDS 40.0%
!!! TTTGGTGTTTTTGGAGTTGG+GGG - chr7.1:81782146-81782165 MS.gene021914:CDS 40.0%
AAGGCCAAAAAAGGTGGAGA+TGG - chr7.1:81782211-81782230 MS.gene021914:CDS 45.0%
AGGATGTCGAAGAAAGTGAG+AGG + chr7.1:81781021-81781040 None:intergenic 45.0%
CTGGATACACCTTTAGCCAT+AGG + chr7.1:81781041-81781060 None:intergenic 45.0%
CTTATCCAGGATGTTCCCAA+AGG - chr7.1:81781623-81781642 MS.gene021914:CDS 45.0%
CTTCGACATCCTATGGCTAA+AGG - chr7.1:81781029-81781048 MS.gene021914:CDS 45.0%
GAAAGTGAGAGGGATTGTTG+TGG + chr7.1:81781010-81781029 None:intergenic 45.0%
GAACACTTTCTCCCTTTAGC+TGG - chr7.1:81781165-81781184 MS.gene021914:CDS 45.0%
GAATCTGCGGATTCCAAATG+CGG + chr7.1:81781342-81781361 None:intergenic 45.0%
GGATGTCGAAGAAAGTGAGA+GGG + chr7.1:81781020-81781039 None:intergenic 45.0%
TCCCCATAGATTGCAGATCA+AGG - chr7.1:81781913-81781932 MS.gene021914:CDS 45.0%
TTCAAGCGTGAGTTTGAACG+TGG + chr7.1:81781715-81781734 None:intergenic 45.0%
! AAGGGTGTGATTGGGAACTT+GGG + chr7.1:81781089-81781108 None:intergenic 45.0%
! AGCCCAAGCTTTGATGAACA+TGG + chr7.1:81781466-81781485 None:intergenic 45.0%
! CACCATCATTTGGGGTATGT+TGG + chr7.1:81781230-81781249 None:intergenic 45.0%
!! ATGGTGTGTACTGGTTCCAA+TGG + chr7.1:81781418-81781437 None:intergenic 45.0%
!! CGAACTGAGTCTTCGAGTTT+TGG + chr7.1:81781690-81781709 None:intergenic 45.0%
!! CTAAAGGGAGAAAGTGTTCG+AGG + chr7.1:81781164-81781183 None:intergenic 45.0%
!! GTGGTTTGCGTTGATGATTG+AGG + chr7.1:81780991-81781010 None:intergenic 45.0%
!!! AGACTGATTTTGGTTGGGGA+AGG - chr7.1:81782192-81782211 MS.gene021914:CDS 45.0%
!!! GACACCATCTCCACCTTTTT+TGG + chr7.1:81782218-81782237 None:intergenic 45.0%
!!! TTGGTGTTTTTGGAGTTGGG+GGG - chr7.1:81782147-81782166 MS.gene021914:CDS 45.0%
AGCGATTCATGGAGCTGCTA+AGG - chr7.1:81781866-81781885 MS.gene021914:CDS 50.0%
CGAGACAAAGAGGCTTCATG+AGG + chr7.1:81781309-81781328 None:intergenic 50.0%
GTGTGATTGGGAACTTGGGA+GGG + chr7.1:81781085-81781104 None:intergenic 50.0%
GTTGGACTCTGCAATGAGCA+AGG + chr7.1:81781256-81781275 None:intergenic 50.0%
TGGTTGGGGAAGGCCAAAAA+AGG - chr7.1:81782202-81782221 MS.gene021914:CDS 50.0%
TTGGGGAAGGCCAAAAAAGG+TGG - chr7.1:81782205-81782224 MS.gene021914:CDS 50.0%
! GAAGGGTGTGATTGGGAACT+TGG + chr7.1:81781090-81781109 None:intergenic 50.0%
!! GAGATGGTGTCGGTAGATAG+AGG - chr7.1:81782227-81782246 MS.gene021914:CDS 50.0%
GGTGTGATTGGGAACTTGGG+AGG + chr7.1:81781086-81781105 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 81780937 81782397 81780937 ID=MS.gene021914
chr7.1 mRNA 81780937 81782397 81780937 ID=MS.gene021914.t1;Parent=MS.gene021914
chr7.1 exon 81780937 81782397 81780937 ID=MS.gene021914.t1.exon1;Parent=MS.gene021914.t1
chr7.1 CDS 81780937 81782397 81780937 ID=cds.MS.gene021914.t1;Parent=MS.gene021914.t1
Gene Sequence

>MS.gene021914

ATGGCTTTCAACAACAAGAATATCAAGATCCATGAACACATCAATGTTGCTCCTCAATCATCAACGCAAACCACAACAATCCCTCTCACTTTCTTCGACATCCTATGGCTAAAGGTGTATCCAGTCGAACGTGTTTTCTTCTACACCCTCCCAAGTTCCCAATCACACCCTTCTTTCTTCTTCCAAAAGCTTGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCGAACACTTTCTCCCTTTAGCTGGTAAGATCATTTGGCCTTCCGAATCTCAACAACCAATAATCCAACATACCCCAAATGATGGTGTTTCCTTGCTCATTGCAGAGTCCAACGTTGATTTCGATCAAGTCATTGAAAACTCACCTCATGAAGCCTCTTTGTCTCGTTCTTTTATACCGCATTTGGAATCCGCAGATTCTTTTGCTTCTATTATTTCAATTCAGATAACCCTTTTTCAAAAAAGTGGTTTTTCCATTGGAACCAGTACACACCATGCTATTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCTTGGGCTTATTTATGCAACAAAGCAATTGAAACCAATGAAGAATCACCAACTTTGTTACCTGAGTTAGAACCTCTATTCAACAGGGAAATCATCAAAGACCCAAATGAACTTGGTGTTACATTCACAAATATTTGCACTGAGATCTTATCCAGGATGTTCCCAAAGGAAAAAGGAAACGAACATAGCTTAAATATTTTACACTTTGAACCAAAACTCGAAGACTCAGTTCGTGCCACGTTCAAACTCACGCTTGAAGATTTGAACAAGATAAAGCAAATGGTATTATCAAAATGGGAAGTTGTTGATAAAAATGAATCAAATTCAAAGCCACAATCTTTATCAACCTTTGTTCTCACTTGTGCTTATTCACTCGTTTGTTACGCAAAAGCGATTCATGGAGCTGCTAAGGAGAAAGAGAAGTTTTCTTTTGCTTTCCCCATAGATTGCAGATCAAGGTTAGAACCACCAATACCAAATAACTATTTTGGAAATTGTGTTTGGGGGCATTTTATTGATACAAATCCATCGGACTTTATAGAAGAAGACGGTGTTTATTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGATAATGGTGTTTTTCAAGGATCTATTAATGATGGGTTTGACAAATATAATTCTTTGATAAATGAGGGATTTGGTGTTTTTGGAGTTGGGGGGTCTAATAAATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCAAAAAAGGTGGAGATGGTGTCGGTAGATAGAGGTTTAATCATTGGTTTGGCAGAGAGCAAAGATGAAAATGGTGGGGTTGAAATTGGTCTTGTTCTTAATAAGCATGTAATGGACCTCTTTAGCACTTTCTTTATTGAAGGACTTTGCTTAATTGACAGGAGAGAGGAAGTGCAATGTTGA
Protein sequence

>MS.gene021914.t1

MAFNNKNIKIHEHINVAPQSSTQTTTIPLTFFDILWLKVYPVERVFFYTLPSSQSHPSFFFQKLVPILKSSLSLTLEHFLPLAGKIIWPSESQQPIIQHTPNDGVSLLIAESNVDFDQVIENSPHEASLSRSFIPHLESADSFASIISIQITLFQKSGFSIGTSTHHAILDGKSSTMFIKAWAYLCNKAIETNEESPTLLPELEPLFNREIIKDPNELGVTFTNICTEILSRMFPKEKGNEHSLNILHFEPKLEDSVRATFKLTLEDLNKIKQMVLSKWEVVDKNESNSKPQSLSTFVLTCAYSLVCYAKAIHGAAKEKEKFSFAFPIDCRSRLEPPIPNNYFGNCVWGHFIDTNPSDFIEEDGVYLVAKCIHEKIKMINDNGVFQGSINDGFDKYNSLINEGFGVFGVGGSNKFGVYETDFGWGRPKKVEMVSVDRGLIIGLAESKDENGGVEIGLVLNKHVMDLFSTFFIEGLCLIDRREEVQC