AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021909

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021909.t1 MTR_7g013850 78.261 483 102 2 1 480 1 483 0.0 775
MS.gene021909.t1 MTR_7g014200 59.420 483 175 11 1 477 1 468 0.0 547
MS.gene021909.t1 MTR_7g014160 57.917 480 187 10 6 480 7 476 0.0 541
MS.gene021909.t1 MTR_7g014610 59.175 485 182 12 1 478 1 476 0.0 520
MS.gene021909.t1 MTR_7g014620 52.258 465 184 9 19 480 6 435 8.07e-150 434
MS.gene021909.t1 MTR_7g014630 50.418 359 159 7 5 350 6 358 1.56e-108 327
MS.gene021909.t1 MTR_6g015320 39.501 481 260 10 1 477 1 454 5.52e-105 320
MS.gene021909.t1 MTR_6g015315 39.368 475 263 10 4 477 2 452 6.21e-104 318
MS.gene021909.t1 MTR_6g015850 40.369 488 249 14 1 477 1 457 2.97e-102 313
MS.gene021909.t1 MTR_6g015815 42.140 458 232 12 25 477 31 460 1.11e-101 312
MS.gene021909.t1 MTR_6g015830 39.715 491 251 14 1 477 1 460 7.73e-100 308
MS.gene021909.t1 MTR_7g014330 39.545 483 249 16 9 477 3 456 3.81e-99 306
MS.gene021909.t1 MTR_7g014250 38.831 479 258 13 9 477 3 456 1.25e-98 304
MS.gene021909.t1 MTR_7g014230 39.167 480 253 13 9 476 5 457 1.47e-98 304
MS.gene021909.t1 MTR_3g028210 34.639 485 274 15 8 477 8 464 2.99e-74 241
MS.gene021909.t1 MTR_7g014180 68.156 179 50 5 1 178 1 173 3.17e-73 229
MS.gene021909.t1 MTR_2g089765 31.911 492 280 14 11 477 21 482 1.47e-67 224
MS.gene021909.t1 MTR_7g014360 34.307 411 216 13 76 477 21 386 7.66e-67 219
MS.gene021909.t1 MTR_7g014670 55.789 190 82 2 289 477 71 259 6.29e-66 213
MS.gene021909.t1 MTR_7g015860 32.305 486 266 16 8 468 5 452 5.37e-60 204
MS.gene021909.t1 MTR_2g089670 31.410 468 272 14 26 477 43 477 1.56e-59 203
MS.gene021909.t1 MTR_2g089650 29.485 485 297 12 8 477 9 463 5.05e-58 199
MS.gene021909.t1 MTR_3g087640 30.957 491 289 16 9 477 10 472 7.59e-58 199
MS.gene021909.t1 MTR_6g015310 32.840 405 199 12 51 455 2 333 1.13e-54 186
MS.gene021909.t1 MTR_2g089735 31.473 448 271 12 41 477 39 461 1.65e-54 189
MS.gene021909.t1 MTR_2g089755 29.614 466 285 13 28 477 37 475 2.99e-54 189
MS.gene021909.t1 MTR_8g012750 30.444 473 280 16 26 475 24 470 1.84e-52 184
MS.gene021909.t1 MTR_7g014310 27.628 333 172 8 130 460 41 306 2.95e-34 130
MS.gene021909.t1 MTR_3g435300 31.624 234 135 6 7 229 3 222 6.15e-27 109
MS.gene021909.t1 MTR_2g089665 25.771 454 202 16 11 454 7 335 1.44e-26 110
MS.gene021909.t1 MTR_3g070170 24.678 466 268 18 8 439 12 428 7.04e-21 95.5
MS.gene021909.t1 MTR_4g007540 24.545 440 258 19 8 429 3 386 1.12e-20 94.7
MS.gene021909.t1 MTR_4g094838 27.640 445 226 19 19 439 19 391 3.15e-20 93.2
MS.gene021909.t1 MTR_3g101900 24.336 452 282 16 28 466 30 434 8.90e-19 89.0
MS.gene021909.t1 MTR_6g045553 23.482 494 301 19 7 467 13 462 2.86e-18 87.8
MS.gene021909.t1 MTR_8g075610 23.881 402 234 18 50 429 23 374 1.58e-17 85.1
MS.gene021909.t1 MTR_2g064495 22.678 463 282 21 31 475 27 431 2.11e-16 81.6
MS.gene021909.t1 MTR_2g105330 22.678 463 282 21 31 475 27 431 2.84e-16 81.3
MS.gene021909.t1 MTR_7g086000 24.173 393 224 14 67 429 60 408 1.10e-14 76.6
MS.gene021909.t1 MTR_4g094842 23.284 408 226 16 62 439 57 407 1.35e-14 76.3
MS.gene021909.t1 MTR_8g467580 24.201 438 240 16 17 429 15 385 2.11e-14 75.5
MS.gene021909.t1 MTR_7g014210 33.645 107 69 2 335 439 24 130 4.89e-14 70.5
MS.gene021909.t1 MTR_4g097090 24.228 421 259 16 26 428 28 406 5.32e-14 74.3
MS.gene021909.t1 MTR_8g467590 24.937 397 229 18 60 442 53 394 6.81e-14 73.9
MS.gene021909.t1 MTR_7g014340 53.425 73 27 2 9 77 3 72 2.73e-13 66.2
MS.gene021909.t1 MTR_8g096530 24.601 439 261 16 3 429 2 382 2.76e-13 72.0
MS.gene021909.t1 MTR_3g101930 24.490 441 267 19 13 432 12 407 3.08e-13 72.0
MS.gene021909.t1 MTR_7g014205 29.032 124 76 2 317 439 2 114 1.91e-12 64.3
MS.gene021909.t1 MTR_4g127650 21.586 454 295 16 41 475 43 454 2.55e-12 68.9
MS.gene021909.t1 MTR_2g015430 20.915 459 291 14 8 456 2 398 4.67e-12 68.2
MS.gene021909.t1 MTR_3g098980 25.000 288 172 11 67 351 66 312 1.07e-11 67.0
MS.gene021909.t1 MTR_3g102010 22.566 452 281 16 8 439 7 409 1.77e-11 66.6
MS.gene021909.t1 MTR_7g084940 22.656 384 228 13 61 429 63 392 2.63e-11 65.9
MS.gene021909.t1 MTR_7g014220 58.491 53 19 1 25 77 15 64 4.76e-11 59.3
MS.gene021909.t1 MTR_4g015180 21.946 483 334 14 10 466 8 473 5.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021909.t1 AT5G39050 37.759 482 270 14 5 477 7 467 3.57e-90 283
MS.gene021909.t1 AT3G29590 36.307 482 268 9 1 477 1 448 3.50e-89 280
MS.gene021909.t1 AT3G29635 38.074 457 253 11 24 477 25 454 8.34e-89 279
MS.gene021909.t1 AT5G39080 37.006 481 273 14 1 474 1 458 1.79e-86 273
MS.gene021909.t1 AT5G39090 36.042 480 271 12 1 477 1 447 3.49e-85 269
MS.gene021909.t1 AT3G29670 37.161 479 260 14 8 477 3 449 7.07e-85 268
MS.gene021909.t1 AT5G61160 33.404 473 283 13 8 475 3 448 9.67e-75 242
MS.gene021909.t1 AT3G29680 35.849 477 264 14 4 473 2 443 1.66e-73 239
MS.gene021909.t1 AT1G03940 29.400 500 294 13 1 477 1 464 9.52e-62 209
MS.gene021909.t1 AT1G03495 30.189 371 218 12 1 359 1 342 1.25e-39 146
MS.gene021909.t1 AT5G23940 25.219 456 269 20 8 439 3 410 2.86e-20 94.0
MS.gene021909.t1 AT3G29720 34.247 219 103 10 99 303 10 201 3.67e-19 86.7
MS.gene021909.t1 AT2G19070 24.691 405 249 17 41 428 37 402 3.93e-19 90.1
MS.gene021909.t1 AT3G50280 24.009 429 264 16 19 434 18 397 8.67e-18 85.9
MS.gene021909.t1 AT5G67150 24.065 428 276 11 16 434 13 400 9.48e-18 85.9
MS.gene021909.t1 AT5G07850 24.832 447 282 19 1 434 1 406 5.91e-15 77.4
MS.gene021909.t1 AT3G29690 30.464 151 99 2 328 477 33 178 1.16e-14 72.8
MS.gene021909.t1 AT2G39980 23.171 492 328 16 1 467 1 467 3.56e-14 75.1
MS.gene021909.t1 AT4G31910 22.129 357 233 9 44 389 46 368 2.18e-11 66.2

Find 71 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTGTTGTCTAAATATT+TGG 0.130040 7.1:+81863752 MS.gene021909:CDS
GATTACTTCCCTACTCAAAA+AGG 0.196644 7.1:-81863199 None:intergenic
GTAGGGTGTGATTGTGAATT+TGG 0.209360 7.1:-81862724 None:intergenic
TTGAAAGGTGGTGTTGAATT+TGG 0.214452 7.1:+81863927 MS.gene021909:CDS
GAGAGTGAAGATTTGAGTTT+TGG 0.216722 7.1:-81862769 None:intergenic
GATAATTGGTTTGCAGAATT+AGG 0.230849 7.1:-81862628 None:intergenic
ACAAAAGTTGACAATTTCTT+TGG 0.263553 7.1:-81863456 None:intergenic
AACGAAACTCCGTCATCTTT+TGG 0.264453 7.1:-81862874 None:intergenic
GGAGTATATGAGATTGATTT+TGG 0.273264 7.1:+81863828 MS.gene021909:CDS
AAGTGAGAGGAAGAGATAAT+TGG 0.284573 7.1:-81862642 None:intergenic
CGAACGGAATCCTTAACTTT+TGG 0.284718 7.1:-81863333 None:intergenic
TTCTTCAATATTGTTCCATT+TGG 0.285958 7.1:-81863412 None:intergenic
TCTTCCTTGGTAAAGTCTTC+TGG 0.306022 7.1:-81863654 None:intergenic
CCAATTCTCGAAATCTATTT+CGG 0.307853 7.1:+81863597 MS.gene021909:CDS
TTGAACTGGATGATTGGTTT+TGG 0.318638 7.1:-81862850 None:intergenic
CGAGCTCACACGTGAAGATT+TGG 0.321526 7.1:+81863365 MS.gene021909:CDS
CTATAGCCGGTAACATTGTT+TGG 0.330391 7.1:+81862815 MS.gene021909:CDS
TCACTTTCTTAGACTTGAAT+TGG 0.344769 7.1:+81862659 MS.gene021909:CDS
CCGAAATAGATTTCGAGAAT+TGG 0.349158 7.1:-81863597 None:intergenic
TGAAAGGTGGTGTTGAATTT+GGG 0.355212 7.1:+81863928 MS.gene021909:CDS
GTTGATAGAGGAATAACAAT+TGG 0.386783 7.1:+81863885 MS.gene021909:CDS
TCTAAATATTTGGCTATGAT+TGG 0.398839 7.1:+81863762 MS.gene021909:CDS
ATCTCACTCTCAAAACCATT+TGG 0.401328 7.1:-81863228 None:intergenic
TAGAAGAAAATACGTTCAAC+TGG 0.403167 7.1:-81862694 None:intergenic
ACACATCATGCTGTTCTTGA+TGG 0.407163 7.1:+81863081 MS.gene021909:CDS
ATTCAAGGAATAGGAGTTGC+AGG 0.408252 7.1:+81863792 MS.gene021909:CDS
CAAACAATGTTACCGGCTAT+AGG 0.417276 7.1:-81862814 None:intergenic
AAACAATGTTACCGGCTATA+GGG 0.421018 7.1:-81862813 None:intergenic
TTTGGATTGAACTGGATGAT+TGG 0.424802 7.1:-81862856 None:intergenic
GGTGAAGGAATTCAAGGAAT+AGG 0.425888 7.1:+81863783 MS.gene021909:CDS
AGAAGGCCAAACAATGTTAC+CGG 0.429788 7.1:-81862821 None:intergenic
ACAAAAGTGTGTTGTCCAAA+TGG 0.432381 7.1:+81863397 MS.gene021909:CDS
TAGGGTGTGATTGTGAATTT+GGG 0.451765 7.1:-81862723 None:intergenic
TTTGAGTAGGGAAGTAATCA+AGG 0.453618 7.1:+81863203 MS.gene021909:CDS
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7.1:+81863807 MS.gene021909:CDS
AGAGTGAGATCATAAATAGT+TGG 0.463701 7.1:+81863241 MS.gene021909:CDS
CGGCTATAGGGAGAAAGTAT+TGG 0.472914 7.1:-81862801 None:intergenic
AATCACCACTCCATCTTCCT+TGG 0.480258 7.1:-81863667 None:intergenic
GTGTGATTGTGAATTTGGGA+GGG 0.498440 7.1:-81862719 None:intergenic
ATGATTGGTGAAGGAATTCA+AGG 0.503765 7.1:+81863777 MS.gene021909:CDS
GTGATTGTGAATTTGGGAGG+GGG 0.512685 7.1:-81862717 None:intergenic
GAAAGTAGAGATTTGAAAGG+TGG 0.519737 7.1:+81863915 MS.gene021909:CDS
AAATGGAACAATATTGAAGA+AGG 0.523989 7.1:+81863414 MS.gene021909:CDS
TTATGGAAGGCCTGCAAAAG+TGG 0.524298 7.1:+81863851 MS.gene021909:CDS
TGTGATTGTGAATTTGGGAG+GGG 0.526202 7.1:-81862718 None:intergenic
GAAGTAATCAAGGATCCAAA+TGG 0.526584 7.1:+81863213 MS.gene021909:CDS
GTTCTTGATAAGCACGTGAT+GGG 0.529977 7.1:+81863954 MS.gene021909:CDS
GAAGACTTTACCAAGGAAGA+TGG 0.540696 7.1:+81863657 MS.gene021909:CDS
AGTTCTTGATAAGCACGTGA+TGG 0.563439 7.1:+81863953 MS.gene021909:CDS
GAGACAACTTCAGTTGATAG+AGG 0.566864 7.1:+81863873 MS.gene021909:CDS
AGTTTCCTTTGATAAAATTG+TGG 0.567981 7.1:+81862924 MS.gene021909:CDS
CAATACTTTCTCCCTATAGC+CGG 0.569370 7.1:+81862802 MS.gene021909:CDS
AAATAGATTTCGAGAATTGG+TGG 0.573109 7.1:-81863594 None:intergenic
ACAGAAAGTAGAGATTTGAA+AGG 0.576880 7.1:+81863912 MS.gene021909:CDS
TATTTGGCTATGATTGGTGA+AGG 0.577286 7.1:+81863768 MS.gene021909:CDS
CTATAGGGAGAAAGTATTGG+AGG 0.584990 7.1:-81862798 None:intergenic
GGTGTGATTGTGAATTTGGG+AGG 0.587405 7.1:-81862720 None:intergenic
TTCAAGTCTAAGAAAGTGAG+AGG 0.591765 7.1:-81862655 None:intergenic
GAATCAGTTGATTCTAAGTG+AGG 0.601514 7.1:-81862991 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7.1:+81863802 MS.gene021909:CDS
CGAGATAAAGAAGCTTCTTG+TGG 0.621141 7.1:-81862958 None:intergenic
CAGTTCAATCCAAAAGATGA+CGG 0.625889 7.1:+81862865 MS.gene021909:CDS
CAACCATGTTCATCAAAGCA+TGG 0.631200 7.1:+81863112 MS.gene021909:CDS
CTTTACCAAGGAAGATGGAG+TGG 0.638020 7.1:+81863662 MS.gene021909:CDS
TATAGGGAGAAAGTATTGGA+GGG 0.638240 7.1:-81862797 None:intergenic
ATGATGTGTGCTTATTCCAA+TGG 0.647501 7.1:-81863067 None:intergenic
GAGCTCGAATGCGACTCGAA+CGG 0.653104 7.1:-81863349 None:intergenic
AGACCATGCTTTGATGAACA+TGG 0.653845 7.1:-81863115 None:intergenic
TTCAAGGAATAGGAGTTGCA+GGG 0.658447 7.1:+81863793 MS.gene021909:CDS
AGAAGAAAATACGTTCAACT+GGG 0.676059 7.1:-81862693 None:intergenic
TGAGCCAGAAGACTTTACCA+AGG 0.738299 7.1:+81863650 MS.gene021909:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAGAAAAATGGATAA+GGG + chr7.1:81863711-81863730 MS.gene021909:CDS 15.0%
!! TTATAGCAAAATTAGAAAAA+TGG + chr7.1:81863704-81863723 MS.gene021909:CDS 15.0%
!!! CAAAAACAAAAATTTTGTTT+TGG + chr7.1:81863540-81863559 MS.gene021909:CDS 15.0%
!! CAAAATTAGAAAAATGGATA+AGG + chr7.1:81863710-81863729 MS.gene021909:CDS 20.0%
!! TACATTGTTGTCTAAATATT+TGG + chr7.1:81863752-81863771 MS.gene021909:CDS 20.0%
!!! TTTTTTTGAACCAAAAGTTA+AGG + chr7.1:81863323-81863342 MS.gene021909:CDS 20.0%
! AAATGGAACAATATTGAAGA+AGG + chr7.1:81863414-81863433 MS.gene021909:CDS 25.0%
! ACAAAAGTTGACAATTTCTT+TGG - chr7.1:81863459-81863478 None:intergenic 25.0%
! AGTTTCCTTTGATAAAATTG+TGG + chr7.1:81862924-81862943 MS.gene021909:CDS 25.0%
! TCTAAATATTTGGCTATGAT+TGG + chr7.1:81863762-81863781 MS.gene021909:CDS 25.0%
! TTCTTCAATATTGTTCCATT+TGG - chr7.1:81863415-81863434 None:intergenic 25.0%
!!! TATGAGATTGATTTTGGTTA+TGG + chr7.1:81863834-81863853 MS.gene021909:CDS 25.0%
!!! TTCATACCATTTTTCATGAA+GGG + chr7.1:81863982-81864001 MS.gene021909:CDS 25.0%
!!! TTTCATACCATTTTTCATGA+AGG + chr7.1:81863981-81864000 MS.gene021909:CDS 25.0%
AAATAGATTTCGAGAATTGG+TGG - chr7.1:81863597-81863616 None:intergenic 30.0%
ACAGAAAGTAGAGATTTGAA+AGG + chr7.1:81863912-81863931 MS.gene021909:CDS 30.0%
AGAAGAAAATACGTTCAACT+GGG - chr7.1:81862696-81862715 None:intergenic 30.0%
AGAGTGAGATCATAAATAGT+TGG + chr7.1:81863241-81863260 MS.gene021909:CDS 30.0%
ATTACTTCCCTACTCAAAAA+GGG - chr7.1:81863201-81863220 None:intergenic 30.0%
CCAATTCTCGAAATCTATTT+CGG + chr7.1:81863597-81863616 MS.gene021909:CDS 30.0%
CTCAAAAAGGGTTTCAAAAA+AGG - chr7.1:81863189-81863208 None:intergenic 30.0%
TAGAAGAAAATACGTTCAAC+TGG - chr7.1:81862697-81862716 None:intergenic 30.0%
TCACTTTCTTAGACTTGAAT+TGG + chr7.1:81862659-81862678 MS.gene021909:CDS 30.0%
! ATAACTCTTTTTCCGAAAAG+TGG + chr7.1:81863039-81863058 MS.gene021909:CDS 30.0%
! GTTGATAGAGGAATAACAAT+TGG + chr7.1:81863885-81863904 MS.gene021909:CDS 30.0%
!! GATAATTGGTTTGCAGAATT+AGG - chr7.1:81862631-81862650 None:intergenic 30.0%
!! GGAGTATATGAGATTGATTT+TGG + chr7.1:81863828-81863847 MS.gene021909:CDS 30.0%
!! TTTTGCTTTTGCTATGCAAA+CGG - chr7.1:81863502-81863521 None:intergenic 30.0%
!!! AAGATTTGAGTTTTGGAACA+AGG - chr7.1:81862765-81862784 None:intergenic 30.0%
!!! AGATTGATTTTGGTTATGGA+AGG + chr7.1:81863838-81863857 MS.gene021909:CDS 30.0%
!!! AGGTTTTGAAAGAAGAAAGT+AGG - chr7.1:81862745-81862764 None:intergenic 30.0%
!!! ATTTTGTTTTGGTTTTGCAG+TGG + chr7.1:81863551-81863570 MS.gene021909:CDS 30.0%
!!! GGTTTTGAAAGAAGAAAGTA+GGG - chr7.1:81862744-81862763 None:intergenic 30.0%
!!! TTTGAAACCCTTTTTGAGTA+GGG + chr7.1:81863191-81863210 MS.gene021909:CDS 30.0%
!!! TTTTGAAACCCTTTTTGAGT+AGG + chr7.1:81863190-81863209 MS.gene021909:CDS 30.0%
AAGTGAGAGGAAGAGATAAT+TGG - chr7.1:81862645-81862664 None:intergenic 35.0%
ATCTCACTCTCAAAACCATT+TGG - chr7.1:81863231-81863250 None:intergenic 35.0%
ATGATGTGTGCTTATTCCAA+TGG - chr7.1:81863070-81863089 None:intergenic 35.0%
ATGATTGGTGAAGGAATTCA+AGG + chr7.1:81863777-81863796 MS.gene021909:CDS 35.0%
CAGTTCAATCCAAAAGATGA+CGG + chr7.1:81862865-81862884 MS.gene021909:CDS 35.0%
CCGAAATAGATTTCGAGAAT+TGG - chr7.1:81863600-81863619 None:intergenic 35.0%
GAAAGTAGAGATTTGAAAGG+TGG + chr7.1:81863915-81863934 MS.gene021909:CDS 35.0%
GAAGTAATCAAGGATCCAAA+TGG + chr7.1:81863213-81863232 MS.gene021909:CDS 35.0%
GATTACTTCCCTACTCAAAA+AGG - chr7.1:81863202-81863221 None:intergenic 35.0%
GCATAACCCTTCATGAAAAA+TGG - chr7.1:81863991-81864010 None:intergenic 35.0%
TAGGGTGTGATTGTGAATTT+GGG - chr7.1:81862726-81862745 None:intergenic 35.0%
TATTTGGCTATGATTGGTGA+AGG + chr7.1:81863768-81863787 MS.gene021909:CDS 35.0%
TTCAAGTCTAAGAAAGTGAG+AGG - chr7.1:81862658-81862677 None:intergenic 35.0%
TTTGAGTAGGGAAGTAATCA+AGG + chr7.1:81863203-81863222 MS.gene021909:CDS 35.0%
TTTGGATTGAACTGGATGAT+TGG - chr7.1:81862859-81862878 None:intergenic 35.0%
! AAACAATGTTACCGGCTATA+GGG - chr7.1:81862816-81862835 None:intergenic 35.0%
! ACAAAAGTGTGTTGTCCAAA+TGG + chr7.1:81863397-81863416 MS.gene021909:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+TGG + chr7.1:81863723-81863742 MS.gene021909:CDS 35.0%
! CTGCTCCACAATTTTATCAA+AGG - chr7.1:81862932-81862951 None:intergenic 35.0%
! GAATCAGTTGATTCTAAGTG+AGG - chr7.1:81862994-81863013 None:intergenic 35.0%
! TGAAAGGTGGTGTTGAATTT+GGG + chr7.1:81863928-81863947 MS.gene021909:CDS 35.0%
! TTGAAAGGTGGTGTTGAATT+TGG + chr7.1:81863927-81863946 MS.gene021909:CDS 35.0%
!! CCAATGGAAAAACCACTTTT+CGG - chr7.1:81863054-81863073 None:intergenic 35.0%
!! GAGAGTGAAGATTTGAGTTT+TGG - chr7.1:81862772-81862791 None:intergenic 35.0%
!! TATAGGGAGAAAGTATTGGA+GGG - chr7.1:81862800-81862819 None:intergenic 35.0%
!!! ATTGGTTTTGGAGAATCAGA+AGG - chr7.1:81862841-81862860 None:intergenic 35.0%
!!! TTGAACTGGATGATTGGTTT+TGG - chr7.1:81862853-81862872 None:intergenic 35.0%
ACACATCATGCTGTTCTTGA+TGG + chr7.1:81863081-81863100 MS.gene021909:CDS 40.0%
AGAAGGCCAAACAATGTTAC+CGG - chr7.1:81862824-81862843 None:intergenic 40.0%
AGACCATGCTTTGATGAACA+TGG - chr7.1:81863118-81863137 None:intergenic 40.0%
AGTTCTTGATAAGCACGTGA+TGG + chr7.1:81863953-81863972 MS.gene021909:CDS 40.0%
ATTCAAGGAATAGGAGTTGC+AGG + chr7.1:81863792-81863811 MS.gene021909:CDS 40.0%
CAACCATGTTCATCAAAGCA+TGG + chr7.1:81863112-81863131 MS.gene021909:CDS 40.0%
CAATACTTTCTCCCTATAGC+CGG + chr7.1:81862802-81862821 MS.gene021909:CDS 40.0%
CGAGATAAAGAAGCTTCTTG+TGG - chr7.1:81862961-81862980 None:intergenic 40.0%
CTATAGCCGGTAACATTGTT+TGG + chr7.1:81862815-81862834 MS.gene021909:CDS 40.0%
GAAGACTTTACCAAGGAAGA+TGG + chr7.1:81863657-81863676 MS.gene021909:CDS 40.0%
GGTGAAGGAATTCAAGGAAT+AGG + chr7.1:81863783-81863802 MS.gene021909:CDS 40.0%
GTAGGGTGTGATTGTGAATT+TGG - chr7.1:81862727-81862746 None:intergenic 40.0%
GTGTGATTGTGAATTTGGGA+GGG - chr7.1:81862722-81862741 None:intergenic 40.0%
GTTCTTGATAAGCACGTGAT+GGG + chr7.1:81863954-81863973 MS.gene021909:CDS 40.0%
TCTTCCTTGGTAAAGTCTTC+TGG - chr7.1:81863657-81863676 None:intergenic 40.0%
TGTGATTGTGAATTTGGGAG+GGG - chr7.1:81862721-81862740 None:intergenic 40.0%
TTCAAGGAATAGGAGTTGCA+GGG + chr7.1:81863793-81863812 MS.gene021909:CDS 40.0%
! AACGAAACTCCGTCATCTTT+TGG - chr7.1:81862877-81862896 None:intergenic 40.0%
! CAAACAATGTTACCGGCTAT+AGG - chr7.1:81862817-81862836 None:intergenic 40.0%
! CCGAAAAGTGGTTTTTCCAT+TGG + chr7.1:81863051-81863070 MS.gene021909:CDS 40.0%
! CGAACGGAATCCTTAACTTT+TGG - chr7.1:81863336-81863355 None:intergenic 40.0%
! CGTCATCTTTTGGATTGAAC+TGG - chr7.1:81862867-81862886 None:intergenic 40.0%
!! CTATAGGGAGAAAGTATTGG+AGG - chr7.1:81862801-81862820 None:intergenic 40.0%
!! GAGACAACTTCAGTTGATAG+AGG + chr7.1:81863873-81863892 MS.gene021909:CDS 40.0%
AATCACCACTCCATCTTCCT+TGG - chr7.1:81863670-81863689 None:intergenic 45.0%
CTTTACCAAGGAAGATGGAG+TGG + chr7.1:81863662-81863681 MS.gene021909:CDS 45.0%
GGTGTGATTGTGAATTTGGG+AGG - chr7.1:81862723-81862742 None:intergenic 45.0%
GTGATTGTGAATTTGGGAGG+GGG - chr7.1:81862720-81862739 None:intergenic 45.0%
TGAGCCAGAAGACTTTACCA+AGG + chr7.1:81863650-81863669 MS.gene021909:CDS 45.0%
TTATGGAAGGCCTGCAAAAG+TGG + chr7.1:81863851-81863870 MS.gene021909:CDS 45.0%
! CGGCTATAGGGAGAAAGTAT+TGG - chr7.1:81862804-81862823 None:intergenic 45.0%
!! GAAGTTGTCTCCACTTTTGC+AGG - chr7.1:81863864-81863883 None:intergenic 45.0%
CGAGCTCACACGTGAAGATT+TGG + chr7.1:81863365-81863384 MS.gene021909:CDS 50.0%
GTTGCAGGGTCAACAAGGTT+TGG + chr7.1:81863807-81863826 MS.gene021909:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG + chr7.1:81863802-81863821 MS.gene021909:CDS 50.0%
GAGCTCGAATGCGACTCGAA+CGG - chr7.1:81863352-81863371 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 81862577 81864019 81862577 ID=MS.gene021909
chr7.1 mRNA 81862577 81864019 81862577 ID=MS.gene021909.t1;Parent=MS.gene021909
chr7.1 exon 81862577 81864019 81862577 ID=MS.gene021909.t1.exon1;Parent=MS.gene021909.t1
chr7.1 CDS 81862577 81864019 81862577 ID=cds.MS.gene021909.t1;Parent=MS.gene021909.t1
Gene Sequence

>MS.gene021909

ATGGCTGCTGCAAAGAATCACATCAAAATTCATGAAGAATGTAAAGTTTCTCCTAATTCTGCAAACCAATTATCTCTTCCTCTCACTTTCTTAGACTTGAATTGGCTAAGATTTCACCCAGTTGAACGTATTTTCTTCTACCCCCTCCCAAATTCACAATCACACCCTACTTTCTTCTTTCAAAACCTTGTTCCAAAACTCAAATCTTCACTCTCTTTAACCCTCCAATACTTTCTCCCTATAGCCGGTAACATTGTTTGGCCTTCTGATTCTCCAAAACCAATCATCCAGTTCAATCCAAAAGATGACGGAGTTTCGTTGCTCTTAGCGCAATATGATGACGATGTAGTTTCCTTTGATAAAATTGTGGAGCAGAATTCACCACAAGAAGCTTCTTTATCTCGTTCTTTTGTACCTCACTTAGAATCAACTGATTCTTTTGCTTCTATCATTTCAATTCAGATAACTCTTTTTCCGAAAAGTGGTTTTTCCATTGGAATAAGCACACATCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATATGTAAATCTCTTGAAGAAGAAACACAATCATCAAATTTAGAGCCTTTTTTGAAACCCTTTTTGAGTAGGGAAGTAATCAAGGATCCAAATGGTTTTGAGAGTGAGATCATAAATAGTTGGAACAAAATCTCAACACATTTTGATCAATGCAACGTGAGAAGCTTAAAGATTATGTCAAATTTTTTTGAACCAAAAGTTAAGGATTCCGTTCGAGTCGCATTCGAGCTCACACGTGAAGATTTGGAGAAATTAAACAAAAGTGTGTTGTCCAAATGGAACAATATTGAAGAAGGATCACAAGAACAAGAACAACCAAAGAAATTGTCAACTTTTGTTCTTACATGTGCTTATGTTTCCGTTTGCATAGCAAAAGCAAAACAACAATCTGAAAGCAATCAAAAACAAAAATTTTGTTTTGGTTTTGCAGTGGATATCAGATCAAGATTAGATCCACCAATTCTCGAAATCTATTTCGGAAATTGTGTAACTAATCATATAATTGATACTGAGCCAGAAGACTTTACCAAGGAAGATGGAGTGGTGATTGTTGCAAAGAAAATTTATAGCAAAATTAGAAAAATGGATAAGGGTTTTCTTGATGGTGTAGATACATTGTTGTCTAAATATTTGGCTATGATTGGTGAAGGAATTCAAGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTATGGAAGGCCTGCAAAAGTGGAGACAACTTCAGTTGATAGAGGAATAACAATTGGATTAACAGAAAGTAGAGATTTGAAAGGTGGTGTTGAATTTGGGCTAGTTCTTGATAAGCACGTGATGGGTTTTTTTCATACCATTTTTCATGAAGGGTTATGCTTTGATTGA
Protein sequence

>MS.gene021909.t1

MAAAKNHIKIHEECKVSPNSANQLSLPLTFLDLNWLRFHPVERIFFYPLPNSQSHPTFFFQNLVPKLKSSLSLTLQYFLPIAGNIVWPSDSPKPIIQFNPKDDGVSLLLAQYDDDVVSFDKIVEQNSPQEASLSRSFVPHLESTDSFASIISIQITLFPKSGFSIGISTHHAVLDGKSSTMFIKAWSSICKSLEEETQSSNLEPFLKPFLSREVIKDPNGFESEIINSWNKISTHFDQCNVRSLKIMSNFFEPKVKDSVRVAFELTREDLEKLNKSVLSKWNNIEEGSQEQEQPKKLSTFVLTCAYVSVCIAKAKQQSESNQKQKFCFGFAVDIRSRLDPPILEIYFGNCVTNHIIDTEPEDFTKEDGVVIVAKKIYSKIRKMDKGFLDGVDTLLSKYLAMIGEGIQGIGVAGSTRFGVYEIDFGYGRPAKVETTSVDRGITIGLTESRDLKGGVEFGLVLDKHVMGFFHTIFHEGLCFD