AlfalfaGEDB | MS.gene44642

M. sativa cultivar XinJiangDaYe / MS.gene44642

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44642.t1	XP_003621460.2	82.5	479	81	3	1	479	1	476	5.50E-226	793.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44642.t1	Q940Z5	40.8	478	259	15	6	476	7	467	2.8e-90	334.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44642.t1	G7L650	82.5	479	81	3	1	479	1	476	3.9e-226	793.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene44642	0.854791	9.73E-62	-1.69E-46
MS.gene049396	MS.gene44642	0.854292	1.36E-61	-1.69E-46
MS.gene050170	MS.gene44642	0.831315	1.79E-55	-1.69E-46
MS.gene050216	MS.gene44642	0.824686	7.06E-54	-1.69E-46
MS.gene050323	MS.gene44642	0.859935	2.93E-63	-1.69E-46
MS.gene050496	MS.gene44642	0.806095	9.71E-50	-1.69E-46
MS.gene050502	MS.gene44642	0.80735	5.28E-50	-1.69E-46
MS.gene050662	MS.gene44642	0.801529	8.63E-49	-1.69E-46
MS.gene050697	MS.gene44642	0.830903	2.26E-55	-1.69E-46
MS.gene05080	MS.gene44642	0.81145	6.96E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000764	MS.gene44642	PPI
MS.gene007831	MS.gene44642	PPI
MS.gene011796	MS.gene44642	PPI
MS.gene011801	MS.gene44642	PPI
MS.gene011837	MS.gene44642	PPI
MS.gene012360	MS.gene44642	PPI
MS.gene013787	MS.gene44642	PPI
MS.gene021906	MS.gene44642	PPI
MS.gene021910	MS.gene44642	PPI
MS.gene021916	MS.gene44642	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44642.t1	MTR_7g014160	82.463	479	81	3	1	479	1	476	0.0	803
MS.gene44642.t1	MTR_7g014610	76.827	479	107	4	3	479	2	478	0.0	738
MS.gene44642.t1	MTR_7g014200	73.542	480	117	4	1	479	1	471	0.0	719
MS.gene44642.t1	MTR_7g014620	66.304	460	123	4	22	479	6	435	0.0	593
MS.gene44642.t1	MTR_7g014630	89.333	300	31	1	1	300	1	299	0.0	549
MS.gene44642.t1	MTR_7g013850	58.607	488	182	12	1	476	1	480	0.0	539
MS.gene44642.t1	MTR_7g014670	96.237	186	7	0	294	479	77	262	6.14e-129	375
MS.gene44642.t1	MTR_7g014230	41.545	479	253	12	7	478	2	460	5.30e-115	346
MS.gene44642.t1	MTR_6g015815	41.304	460	247	10	19	476	22	460	5.20e-109	331
MS.gene44642.t1	MTR_7g014330	40.000	475	256	12	10	476	3	456	2.98e-108	329

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44642.t1	AT5G39050	40.710	479	260	15	6	477	7	468	6.34e-102	313
MS.gene44642.t1	AT5G39080	38.675	468	260	15	7	466	3	451	3.86e-99	306
MS.gene44642.t1	AT3G29590	37.945	477	257	11	7	477	6	449	5.47e-95	295
MS.gene44642.t1	AT3G29670	38.667	450	247	10	30	477	28	450	1.03e-93	291
MS.gene44642.t1	AT3G29635	36.444	450	264	9	30	478	28	456	9.93e-88	276
MS.gene44642.t1	AT5G39090	36.188	467	261	15	16	476	12	447	1.80e-86	273
MS.gene44642.t1	AT5G61160	31.478	467	294	8	9	472	3	446	3.14e-75	243
MS.gene44642.t1	AT3G29680	33.775	453	269	11	30	478	24	449	4.46e-74	241
MS.gene44642.t1	AT1G03940	31.837	490	277	14	10	476	9	464	4.58e-70	231
MS.gene44642.t1	AT1G03495	31.667	360	206	11	11	357	10	342	8.67e-45	160

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Find 102 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAACTCCATCATCAT+TGG	0.396435	7.3:+83461640	None:intergenic
AAAGGTGGAGATAGTTTCGG+TGG	0.628419	7.3:-83460661	MS.gene44642:CDS
AAATAGTTACTTGGTAGTGA+TGG	0.550356	7.3:+83460936	None:intergenic
AAATTGTGTGTGGGGACATT+TGG	0.398292	7.3:-83460910	MS.gene44642:CDS
AACAAAGGTGGAGATAGTTT+CGG	0.498546	7.3:-83460664	MS.gene44642:CDS
AACCATGTTTATCAAAGCTT+GGG	0.399105	7.3:-83461414	MS.gene44642:CDS
AACTTATCACCAAGTTCATC+TGG	0.356756	7.3:+83461299	None:intergenic
AAGAATCTGTTGATTCTAAA+TGG	0.182536	7.3:+83461534	None:intergenic
AAGATGTTCCCAAATGAAAA+AGG	0.331198	7.3:-83461248	MS.gene44642:CDS
AAGGAAACTCCATCATCATT+GGG	0.490933	7.3:+83461641	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATGTTTATCAAAGCTT+GGG	-	chr7.3:83461063-83461082	MS.gene44642:CDS	30.0%
AAGATGTTCCCAAATGAAAA+AGG	-	chr7.3:83461229-83461248	MS.gene44642:CDS	30.0%
AAGGATGTGATTGTGAATTT+GGG	+	chr7.3:83460688-83460707	None:intergenic	30.0%
AATTACAACCGTTGTTTGAT+AGG	-	chr7.3:83461140-83461159	MS.gene44642:CDS	30.0%
ACGATATTCCTATCAAACAA+CGG	+	chr7.3:83461151-83461170	None:intergenic	30.0%
AGAACAAACGATGATAAAGT+GGG	+	chr7.3:83461412-83461431	None:intergenic	30.0%
GAGTAACTTTAATGTGTTCA+TGG	+	chr7.3:83460565-83460584	None:intergenic	30.0%
GATAGTGAAGATTTGAGAAT+TGG	+	chr7.3:83460734-83460753	None:intergenic	30.0%
GGATTACATAAATGAAGATG+GGG	-	chr7.3:83461606-83461625	MS.gene44642:CDS	30.0%
TATGTCAAAGAAAGTAAGAG+GGG	+	chr7.3:83460618-83460637	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	83460530	83461969	83460530	ID=MS.gene44642
chr7.3	mRNA	83460530	83461969	83460530	ID=MS.gene44642.t1;Parent=MS.gene44642
chr7.3	exon	83460530	83461969	83460530	ID=MS.gene44642.t1.exon1;Parent=MS.gene44642.t1
chr7.3	CDS	83460530	83461969	83460530	ID=cds.MS.gene44642.t1;Parent=MS.gene44642.t1

Gene Sequence

>MS.gene44642

ATGGATTCCATCGACAAGAGCAACATTAAAATCCATGAACACATTAAAGTTACTCCTCCATCATCAACCCAAAAAACAACAACAACCCCTCTTACTTTCTTTGACATATTTTGGCTTAGGTTCCATCCAGTAGAACGTGTTTTCTTCTACACCCTCCCAAATTCACAATCACATCCTTCTTTCTTTTTCCAAAAACTTGTTCCAATTCTCAAATCTTCACTATCTTTAACCCTCCAACACTTTCTTCCTTTATCCGGTAAAATCGTTTGGCCTTCTGATTTTCCACAACCATTCATCCAATTCAATCCCAATGATGATGGAGTTTCCTTTATCATTGGAGAGTCTGATTTAGATTTCAATCATGTTATTGAAAATTCACCCCATAAAGCTTCTTTGTCTCGCTCTTTTATTCCCCATTTAGAATCAACAGATTCTTTTGCTTCTATTATCTCAGTCCAGATAACCCTTTTTCCAGAAAGTGGTTATTCCATTGGAATAAGCACTCACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTTATCAAAGCTTGGGCTTATCTATGCAACAAAAACATTGAAACCGAAGAACCACAACCTTTGTTGCAAGAATTACAACCGTTGTTTGATAGGAATATCGTCAAAGACCCAGATGAACTTGGTGATAAGTTCACAAATAATTGGAGAGAGATCGTTACTAAGATGTTCCCAAATGAAAAAGGAAACGAAAGATGCTTGAAGATTTTAGCTTTTGAACCAAAGCTCGAAGACTCTCTTCGTGCTACGTTCAAGCTCACACGTGAAGATTTGAACAAGATAAAGCAAATGGTGTTATCAAAATGGGAATTATTGGTCACAAATGAATTAAATTCTAAGCCTCCCACTTTATCATCGTTTGTTCTCACATGTGCTTATGCCCTTGTTTGTTTGGCAAAAGCAATTCATGGAATTAAAATGGAGAAAGAGAAGTTTGCATTTGGATTCACCGTAGATTGCAGAGCAAGGTTAGAGCCATCACTACCAAGTAACTATTTTGGAAATTGTGTGTGGGGACATTTGGTTGATACAAAACCGTTGGATTACATAAATGAAGATGGGGTGTTTTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGAAAAGGGTGTTCTTGAAGGAGCTAGTGATGGGTTTAGTAAATTCAATTATTTGTCAAGTGAAGGATTTGAAATAATAGGAGTGGCGGGATCTAATAGATTTGGTGTTTATGAGATTGATTTTGGGTGGGGAAGACCAACAAAGGTGGAGATAGTTTCGGTGGATAGAGGTTTAACAATTGGCCTGGCAGAGAGCAAAGATGGTAAAGGTGGAATTGAAGTTGGGCTTGTTCTAGATAAGCATGTAATGGATCTCTTTAGAACGTTGTTTCTTGAAGGACTTCACATTAATTGA

Protein sequence

>MS.gene44642.t1

MDSIDKSNIKIHEHIKVTPPSSTQKTTTTPLTFFDIFWLRFHPVERVFFYTLPNSQSHPSFFFQKLVPILKSSLSLTLQHFLPLSGKIVWPSDFPQPFIQFNPNDDGVSFIIGESDLDFNHVIENSPHKASLSRSFIPHLESTDSFASIISVQITLFPESGYSIGISTHHAVLDGKSSTMFIKAWAYLCNKNIETEEPQPLLQELQPLFDRNIVKDPDELGDKFTNNWREIVTKMFPNEKGNERCLKILAFEPKLEDSLRATFKLTREDLNKIKQMVLSKWELLVTNELNSKPPTLSSFVLTCAYALVCLAKAIHGIKMEKEKFAFGFTVDCRARLEPSLPSNYFGNCVWGHLVDTKPLDYINEDGVFLVAKCIHEKIKMINEKGVLEGASDGFSKFNYLSSEGFEIIGVAGSNRFGVYEIDFGWGRPTKVEIVSVDRGLTIGLAESKDGKGGIEVGLVLDKHVMDLFRTLFLEGLHIN