AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91597


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91597.t1 MTR_7g014160 82.672 479 80 3 1 479 1 476 0.0 806
MS.gene91597.t1 MTR_7g014610 76.827 479 107 4 3 479 2 478 0.0 741
MS.gene91597.t1 MTR_7g014200 74.375 480 113 4 1 479 1 471 0.0 729
MS.gene91597.t1 MTR_7g014620 67.462 461 117 5 21 479 6 435 0.0 600
MS.gene91597.t1 MTR_7g014630 89.667 300 30 1 1 300 1 299 0.0 553
MS.gene91597.t1 MTR_7g013850 58.197 488 184 12 1 476 1 480 0.0 536
MS.gene91597.t1 MTR_7g014670 95.699 186 8 0 294 479 77 262 2.93e-127 370
MS.gene91597.t1 MTR_7g014230 41.545 479 253 12 7 478 2 460 8.53e-115 346
MS.gene91597.t1 MTR_7g014330 40.421 475 254 12 10 476 3 456 4.47e-110 333
MS.gene91597.t1 MTR_6g015815 41.304 460 247 10 19 476 22 460 8.56e-110 333
MS.gene91597.t1 MTR_7g014250 40.252 477 252 13 10 476 3 456 1.58e-106 325
MS.gene91597.t1 MTR_6g015320 41.667 480 239 18 7 476 6 454 8.27e-106 323
MS.gene91597.t1 MTR_6g015830 39.446 469 257 12 11 476 16 460 1.10e-105 323
MS.gene91597.t1 MTR_6g015850 39.623 477 250 13 10 476 9 457 4.01e-105 321
MS.gene91597.t1 MTR_6g015315 40.725 469 254 12 10 476 6 452 2.35e-104 319
MS.gene91597.t1 MTR_3g028210 36.952 479 269 12 9 476 8 464 1.35e-85 271
MS.gene91597.t1 MTR_7g014180 77.326 172 37 2 6 177 4 173 1.51e-85 261
MS.gene91597.t1 MTR_2g089765 34.337 498 272 16 6 476 13 482 1.35e-77 251
MS.gene91597.t1 MTR_7g014360 35.452 409 210 11 79 476 21 386 1.72e-76 245
MS.gene91597.t1 MTR_8g012750 32.136 501 280 13 1 474 3 470 8.15e-70 230
MS.gene91597.t1 MTR_3g087640 33.469 490 280 16 10 478 10 474 7.41e-68 225
MS.gene91597.t1 MTR_2g089670 32.397 463 274 12 27 476 41 477 8.90e-67 222
MS.gene91597.t1 MTR_7g015860 31.303 476 271 14 9 462 5 446 9.78e-64 214
MS.gene91597.t1 MTR_2g089735 33.703 451 255 15 44 477 39 462 2.03e-63 213
MS.gene91597.t1 MTR_2g089650 32.258 496 283 19 1 476 1 463 7.72e-58 198
MS.gene91597.t1 MTR_2g089755 32.833 466 268 16 31 477 37 476 1.12e-57 198
MS.gene91597.t1 MTR_6g015310 34.243 403 192 15 54 454 2 333 1.16e-57 194
MS.gene91597.t1 MTR_2g089665 28.256 453 194 16 9 450 2 334 1.95e-39 146
MS.gene91597.t1 MTR_7g014310 29.240 342 175 8 119 459 31 306 8.76e-39 143
MS.gene91597.t1 MTR_3g435300 34.842 221 121 7 20 228 13 222 8.40e-32 123
MS.gene91597.t1 MTR_4g127650 25.054 459 273 15 44 476 43 456 2.58e-22 99.8
MS.gene91597.t1 MTR_8g079950 25.322 466 286 15 12 468 8 420 9.69e-22 97.8
MS.gene91597.t1 MTR_5g081960 23.760 484 314 16 20 465 6 472 1.10e-21 98.2
MS.gene91597.t1 MTR_3g070170 26.132 486 301 20 3 465 6 456 3.88e-21 96.3
MS.gene91597.t1 MTR_7g086000 23.944 497 312 17 8 478 3 459 4.97e-21 95.9
MS.gene91597.t1 MTR_2g064495 23.556 450 288 19 35 474 28 431 9.03e-21 94.7
MS.gene91597.t1 MTR_2g105330 24.109 477 303 21 9 474 3 431 9.82e-21 94.7
MS.gene91597.t1 MTR_3g026950 25.346 434 263 20 65 472 49 447 2.00e-20 94.0
MS.gene91597.t1 MTR_6g045553 26.210 496 287 22 5 465 10 461 2.79e-20 93.6
MS.gene91597.t1 MTR_5g084870 25.532 470 282 20 12 472 8 418 4.75e-20 92.8
MS.gene91597.t1 MTR_3g049150 25.296 506 282 23 9 477 2 448 8.24e-19 89.4
MS.gene91597.t1 MTR_8g075610 23.756 442 271 18 47 474 30 419 1.15e-18 88.6
MS.gene91597.t1 MTR_4g007540 25.000 488 286 26 9 474 3 432 1.76e-18 87.8
MS.gene91597.t1 MTR_4g097090 25.427 468 288 17 30 476 29 456 2.70e-18 87.4
MS.gene91597.t1 MTR_8g467580 24.167 480 283 21 8 466 4 423 4.31e-17 84.0
MS.gene91597.t1 MTR_4g094828 23.684 456 281 18 27 461 25 434 6.68e-17 83.2
MS.gene91597.t1 MTR_3g098980 23.188 483 306 16 1 473 6 433 1.18e-16 82.4
MS.gene91597.t1 MTR_3g101960 24.289 457 275 18 31 465 29 436 2.61e-16 81.6
MS.gene91597.t1 MTR_4g022720 24.578 415 234 15 70 458 55 416 2.11e-15 78.6
MS.gene91597.t1 MTR_8g096530 21.987 473 307 15 5 468 3 422 2.19e-15 78.6
MS.gene91597.t1 MTR_3g026310 25.272 459 282 19 18 458 14 429 2.87e-15 78.2
MS.gene91597.t1 MTR_4g022290 22.198 455 283 14 31 466 30 432 5.24e-15 77.4
MS.gene91597.t1 MTR_7g014205 34.426 122 67 3 318 438 5 114 1.12e-14 70.9
MS.gene91597.t1 MTR_7g027175 21.770 418 264 14 69 472 67 435 1.76e-14 75.9
MS.gene91597.t1 MTR_2g015430 22.016 486 296 20 9 468 2 430 6.62e-14 73.9
MS.gene91597.t1 MTR_4g022800 24.059 478 284 16 18 467 14 440 2.90e-13 72.0
MS.gene91597.t1 MTR_8g079980 23.478 460 270 15 12 452 8 404 1.94e-12 69.3
MS.gene91597.t1 MTR_7g026860 24.578 415 237 13 70 458 55 419 2.32e-12 69.3
MS.gene91597.t1 MTR_7g014340 52.113 71 29 2 10 78 3 70 5.58e-12 62.4
MS.gene91597.t1 MTR_7g014220 57.407 54 20 1 27 80 14 64 1.09e-11 61.2
MS.gene91597.t1 MTR_3g435290 45.588 68 35 1 410 477 53 118 4.53e-11 60.5
MS.gene91597.t1 MTR_4g094842 25.059 423 242 15 70 466 62 435 4.72e-11 65.1
MS.gene91597.t1 MTR_1g053315 21.772 395 253 15 47 428 58 409 8.92e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91597.t1 AT5G39050 40.084 479 263 15 6 477 7 468 2.58e-99 306
MS.gene91597.t1 AT5G39080 38.462 468 261 15 7 466 3 451 3.74e-98 303
MS.gene91597.t1 AT3G29670 38.803 451 245 10 30 477 28 450 1.37e-95 296
MS.gene91597.t1 AT3G29590 37.945 477 257 11 7 477 6 449 3.68e-95 295
MS.gene91597.t1 AT3G29635 36.444 450 264 9 30 478 28 456 4.54e-89 280
MS.gene91597.t1 AT5G39090 36.188 467 261 15 16 476 12 447 1.02e-86 273
MS.gene91597.t1 AT5G61160 31.478 467 294 8 9 472 3 446 5.15e-76 246
MS.gene91597.t1 AT3G29680 33.775 453 269 11 30 478 24 449 8.14e-75 243
MS.gene91597.t1 AT1G03940 32.121 495 269 15 10 476 9 464 1.36e-71 234
MS.gene91597.t1 AT1G03495 32.055 365 198 12 11 357 10 342 5.34e-46 164
MS.gene91597.t1 AT5G23940 26.514 479 293 24 6 466 2 439 6.93e-24 104
MS.gene91597.t1 AT5G41040 24.057 424 263 18 64 474 63 440 2.76e-22 99.8
MS.gene91597.t1 AT5G41040 24.057 424 263 18 64 474 79 456 3.71e-22 99.4
MS.gene91597.t1 AT5G57840 24.593 492 297 22 9 479 3 441 1.12e-19 91.7
MS.gene91597.t1 AT5G67150 24.945 457 278 15 31 470 29 437 2.21e-18 87.8
MS.gene91597.t1 AT2G39980 25.407 492 314 21 1 465 1 466 2.55e-18 87.8
MS.gene91597.t1 AT5G23970 24.026 462 276 15 16 465 9 407 2.83e-18 87.4
MS.gene91597.t1 AT3G29720 30.102 196 116 6 108 302 26 201 9.38e-18 82.4
MS.gene91597.t1 AT3G29690 29.487 156 95 4 326 476 33 178 4.97e-16 76.6
MS.gene91597.t1 AT5G07850 24.324 444 285 19 1 432 1 405 7.04e-14 73.9
MS.gene91597.t1 AT2G40230 21.915 470 317 18 7 471 3 427 9.25e-14 73.6
MS.gene91597.t1 AT1G28680 22.901 393 251 13 48 431 40 389 1.53e-13 72.8
MS.gene91597.t1 AT3G48720 23.278 421 254 17 69 472 60 428 7.60e-13 70.9
MS.gene91597.t1 AT1G65450 24.262 474 313 18 8 476 17 449 7.91e-13 70.9
MS.gene91597.t1 AT3G50280 22.276 413 267 15 31 432 27 396 3.90e-12 68.6
MS.gene91597.t1 AT5G01210 24.890 454 297 15 31 465 27 455 2.93e-11 65.9

Find 100 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTTCTTTGACATATTT+TGG 0.113161 7.4:-84835202 MS.gene91597:CDS
TCACTACCAAATAACTATTT+TGG 0.135502 7.4:-84834279 MS.gene91597:CDS
AATAACCACTTTCTGGAAAA+AGG 0.147614 7.4:+84834829 None:intergenic
GAAGGATGTGATTGTGAATT+TGG 0.152446 7.4:+84835137 None:intergenic
CCAATGGAATAACCACTTTC+TGG 0.167311 7.4:+84834822 None:intergenic
AAGAATCTGTTGATTCTAAA+TGG 0.182536 7.4:+84834880 None:intergenic
AGCAAATGGTGTTATCAAAA+TGG 0.193782 7.4:-84834473 MS.gene91597:CDS
GTTATCAAAATGGGAATTAT+TGG 0.234732 7.4:-84834463 MS.gene91597:CDS
GTGAGAAGTTCACAAATAAT+TGG 0.252348 7.4:-84834632 MS.gene91597:CDS
GGTGTTTATGAGATTGATTT+TGG 0.265782 7.4:-84834045 MS.gene91597:CDS
CAATTTCCAAAATAGTTATT+TGG 0.276645 7.4:+84834273 None:intergenic
AGCGAGACAAAGAAGCTTTA+TGG 0.284458 7.4:+84834913 None:intergenic
AGCAATTCATGGAATTAAAA+TGG 0.285041 7.4:-84834358 MS.gene91597:CDS
GATAGTGAAGATTTGAGAAT+TGG 0.292165 7.4:+84835092 None:intergenic
AATTACAACCGTTGTTTGAT+AGG 0.299087 7.4:-84834683 MS.gene91597:CDS
TGCTTATGCCCTTGTTTGTT+TGG 0.306724 7.4:-84834385 MS.gene91597:CDS
AACTTCTCACCAAGTTCATC+TGG 0.318368 7.4:+84834645 None:intergenic
CGAAGAGAGTCTTCGAGCTT+TGG 0.323617 7.4:+84834537 None:intergenic
AAGATGTTCCCAAATGAAAA+AGG 0.331198 7.4:-84834594 MS.gene91597:CDS
CATCATCATTGGGATTGAAT+TGG 0.334138 7.4:+84834997 None:intergenic
GATGGAGTTTCCTTTATCAT+TGG 0.361065 7.4:-84834978 MS.gene91597:CDS
TTTAGAACGTTGTTTCTTGA+AGG 0.361727 7.4:-84833892 MS.gene91597:CDS
CAACAAAGGTTGTGGTTCTT+CGG 0.369447 7.4:+84834710 None:intergenic
CTTTATCCGGTAAAATCGTT+TGG 0.369901 7.4:-84835046 MS.gene91597:CDS
CAACCATGTTTATCAAAGCT+TGG 0.376272 7.4:-84834761 MS.gene91597:CDS
ATCAGACTCTCCAATGATAA+AGG 0.377649 7.4:+84834968 None:intergenic
GAAACTATCTCCACCTTTGT+TGG 0.379376 7.4:+84834012 None:intergenic
AGAATCTGTTGATTCTAAAT+GGG 0.380644 7.4:+84834881 None:intergenic
GCGAGACAAAGAAGCTTTAT+GGG 0.390830 7.4:+84834914 None:intergenic
GTGGATAGAGGTTTAACAAT+TGG 0.394688 7.4:-84833988 MS.gene91597:CDS
AGTGAAGGATTTGAAATAAT+AGG 0.395317 7.4:-84834090 MS.gene91597:CDS
ACTCACCATGCTGTTCTTGA+TGG 0.395647 7.4:-84834792 MS.gene91597:CDS
AAAGGAAACTCCATCATCAT+TGG 0.396435 7.4:+84834986 None:intergenic
GAGTAACTTTAATGTGTTCA+TGG 0.397045 7.4:+84835261 None:intergenic
AAATTGTGTGTGGGGACATT+TGG 0.398292 7.4:-84834256 MS.gene91597:CDS
AACCATGTTTATCAAAGCTT+GGG 0.399105 7.4:-84834760 MS.gene91597:CDS
CAACACTTTCTTCCTTTATC+CGG 0.406614 7.4:-84835059 MS.gene91597:CDS
TACCATCTTTGCTCTCTGCC+AGG 0.406929 7.4:+84833965 None:intergenic
AAGGATGTGATTGTGAATTT+GGG 0.407904 7.4:+84835138 None:intergenic
TGTTTGGCAAAAGCAATTCA+TGG 0.416726 7.4:-84834369 MS.gene91597:CDS
GCAAATGGTGTTATCAAAAT+GGG 0.418223 7.4:-84834472 MS.gene91597:CDS
AATATGTCAAAGAAAGTAAG+AGG 0.422390 7.4:+84835206 None:intergenic
GTGGCAGGATCTAATAGATT+TGG 0.423530 7.4:-84834066 MS.gene91597:CDS
CCAGAAAGTGGTTATTCCAT+TGG 0.423707 7.4:-84834822 MS.gene91597:CDS
AATAAAGATGATAAATGAAA+AGG 0.424032 7.4:-84834163 MS.gene91597:CDS
GGTAAAGGTGGAATTGAAGT+TGG 0.427876 7.4:-84833946 MS.gene91597:CDS
GAGAACAAACGATGATAAAG+TGG 0.433417 7.4:+84834413 None:intergenic
GAGATAGTTTCGGTGGATAG+AGG 0.442745 7.4:-84834000 MS.gene91597:CDS
TTCAATTATTTGTCAAGTGA+AGG 0.447336 7.4:-84834105 MS.gene91597:CDS
ATAAAGATGATAAATGAAAA+GGG 0.447547 7.4:-84834162 MS.gene91597:CDS
AATGAAAAGGGTGTTCTTGA+AGG 0.453937 7.4:-84834150 MS.gene91597:CDS
TAGAAGAAAACACGTTCTAC+TGG 0.455942 7.4:+84835167 None:intergenic
TTGGATTACATAAATGAAGA+TGG 0.466086 7.4:-84834219 MS.gene91597:CDS
GTAAAGGTGGAATTGAAGTT+GGG 0.475472 7.4:-84833945 MS.gene91597:CDS
CAATTCAATCCCAATGATGA+TGG 0.476347 7.4:-84834996 MS.gene91597:CDS
TTTGAACAAGATAAAGCAAA+TGG 0.487133 7.4:-84834487 MS.gene91597:CDS
TTGGGATTGAATTGGATGAA+TGG 0.488013 7.4:+84835005 None:intergenic
AAGGAAACTCCATCATCATT+GGG 0.490933 7.4:+84834987 None:intergenic
GTTCTTGAAGGAGCTAGTGA+TGG 0.493087 7.4:-84834138 MS.gene91597:CDS
TTCTTGAAGGAGCTAGTGAT+GGG 0.497785 7.4:-84834137 MS.gene91597:CDS
AACAAAGGTGGAGATAGTTT+CGG 0.498546 7.4:-84834010 MS.gene91597:CDS
AATTCTTGCAACAAAGGTTG+TGG 0.499343 7.4:+84834702 None:intergenic
TTTAATGTTGCTCTTGTCGA+TGG 0.499466 7.4:+84835286 None:intergenic
GGTTGTAATTCTTGCAACAA+AGG 0.507240 7.4:+84834696 None:intergenic
TTTGGTTGATACAAAACCGT+TGG 0.511791 7.4:-84834238 MS.gene91597:CDS
TGGATTACATAAATGAAGAT+GGG 0.512542 7.4:-84834218 MS.gene91597:CDS
TAGAGGTTTAACAATTGGCC+TGG 0.518320 7.4:-84833983 MS.gene91597:CDS
AAATAGTTATTTGGTAGTGA+TGG 0.521146 7.4:+84834282 None:intergenic
GTCAAAGACCCAGATGAACT+TGG 0.526008 7.4:-84834654 MS.gene91597:CDS
TTGAATTGGATGAATGGTTG+TGG 0.526009 7.4:+84835011 None:intergenic
TTTGAAATAATAGGAGTGGC+AGG 0.533622 7.4:-84834081 MS.gene91597:CDS
GGCCTGGCAGAGAGCAAAGA+TGG 0.534800 7.4:-84833967 MS.gene91597:CDS
CGGATAAAGGAAGAAAGTGT+TGG 0.538758 7.4:+84835060 None:intergenic
TAACCTTGCTCTGCAATCTA+CGG 0.549902 7.4:+84834308 None:intergenic
TGTTCTAGATAAGAATGTAA+TGG 0.550784 7.4:-84833920 MS.gene91597:CDS
AGAAAACACGTTCTACTGGA+TGG 0.552911 7.4:+84835171 None:intergenic
TCTTCATTTATGTAATCCAA+CGG 0.557148 7.4:+84834222 None:intergenic
AGCCCAAGCTTTGATAAACA+TGG 0.576503 7.4:+84834758 None:intergenic
GCAGAGAGCAAAGATGGTAA+AGG 0.579752 7.4:-84833961 MS.gene91597:CDS
GAATCTGTTGATTCTAAATG+GGG 0.580465 7.4:+84834882 None:intergenic
ACTTCTCACCAAGTTCATCT+GGG 0.598487 7.4:+84834646 None:intergenic
TAAAGGAAGAAAGTGTTGGA+GGG 0.602546 7.4:+84835064 None:intergenic
ATGGTGAGTGCTTATTCCAA+TGG 0.605931 7.4:+84834806 None:intergenic
ATAAAGGAAGAAAGTGTTGG+AGG 0.607267 7.4:+84835063 None:intergenic
ATATGTCAAAGAAAGTAAGA+GGG 0.609956 7.4:+84835207 None:intergenic
GTGGGGAAGACCAACAAAGG+TGG 0.612550 7.4:-84834022 MS.gene91597:CDS
TCACCGTAGATTGCAGAGCA+AGG 0.613072 7.4:-84834311 MS.gene91597:CDS
GAGAGCAAAGATGGTAAAGG+TGG 0.619484 7.4:-84833958 MS.gene91597:CDS
AGGATTTGAAATAATAGGAG+TGG 0.624166 7.4:-84834085 MS.gene91597:CDS
TGGGTGGGGAAGACCAACAA+AGG 0.627130 7.4:-84834025 MS.gene91597:CDS
AAAGGTGGAGATAGTTTCGG+TGG 0.628419 7.4:-84834007 MS.gene91597:CDS
TATGTCAAAGAAAGTAAGAG+GGG 0.629256 7.4:+84835208 None:intergenic
GGATTACATAAATGAAGATG+GGG 0.640685 7.4:-84834217 MS.gene91597:CDS
ACGATATTCCTATCAAACAA+CGG 0.641063 7.4:+84834675 None:intergenic
GATGTGATTGTGAATTTGGG+AGG 0.652869 7.4:+84835141 None:intergenic
AATGGTTGTGGAGAATCAGA+AGG 0.653744 7.4:+84835023 None:intergenic
ATGTGATTGTGAATTTGGGA+GGG 0.663766 7.4:+84835142 None:intergenic
AGAACAAACGATGATAAAGT+GGG 0.666203 7.4:+84834414 None:intergenic
CGAGACAAAGAAGCTTTATG+GGG 0.673549 7.4:+84834915 None:intergenic
ACAAACGATGATAAAGTGGG+AGG 0.690874 7.4:+84834417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGATGATAAATGAAA+AGG - chr7.4:84835006-84835025 MS.gene91597:CDS 15.0%
!! ATAAAGATGATAAATGAAAA+GGG - chr7.4:84835007-84835026 MS.gene91597:CDS 15.0%
!! CAATTTCCAAAATAGTTATT+TGG + chr7.4:84834899-84834918 None:intergenic 20.0%
!!! TTACTTTCTTTGACATATTT+TGG - chr7.4:84833967-84833986 MS.gene91597:CDS 20.0%
! AATATGTCAAAGAAAGTAAG+AGG + chr7.4:84833966-84833985 None:intergenic 25.0%
! AGCAATTCATGGAATTAAAA+TGG - chr7.4:84834811-84834830 MS.gene91597:CDS 25.0%
! ATATGTCAAAGAAAGTAAGA+GGG + chr7.4:84833965-84833984 None:intergenic 25.0%
! GTTATCAAAATGGGAATTAT+TGG - chr7.4:84834706-84834725 MS.gene91597:CDS 25.0%
! TCTTCATTTATGTAATCCAA+CGG + chr7.4:84834950-84834969 None:intergenic 25.0%
! TGGATTACATAAATGAAGAT+GGG - chr7.4:84834951-84834970 MS.gene91597:CDS 25.0%
! TTCAATTATTTGTCAAGTGA+AGG - chr7.4:84835064-84835083 MS.gene91597:CDS 25.0%
! TTGGATTACATAAATGAAGA+TGG - chr7.4:84834950-84834969 MS.gene91597:CDS 25.0%
! TTTGAACAAGATAAAGCAAA+TGG - chr7.4:84834682-84834701 MS.gene91597:CDS 25.0%
!! AGTGAAGGATTTGAAATAAT+AGG - chr7.4:84835079-84835098 MS.gene91597:CDS 25.0%
!! TCACTACCAAATAACTATTT+TGG - chr7.4:84834890-84834909 MS.gene91597:CDS 25.0%
!! TGTTCTAGATAAGAATGTAA+TGG - chr7.4:84835249-84835268 MS.gene91597:CDS 25.0%
!!! AAATAGTTATTTGGTAGTGA+TGG + chr7.4:84834890-84834909 None:intergenic 25.0%
!!! AAGAATCTGTTGATTCTAAA+TGG + chr7.4:84834292-84834311 None:intergenic 25.0%
!!! AGAATCTGTTGATTCTAAAT+GGG + chr7.4:84834291-84834310 None:intergenic 25.0%
!!! AGTTTTTGGAAAAAGAAAGA+AGG + chr7.4:84834053-84834072 None:intergenic 25.0%
!!! GTGTTTATGAGATTGATTTT+GGG - chr7.4:84835125-84835144 MS.gene91597:CDS 25.0%
!!! TTTCGTTTCCTTTTTCATTT+GGG + chr7.4:84834586-84834605 None:intergenic 25.0%
AACCATGTTTATCAAAGCTT+GGG - chr7.4:84834409-84834428 MS.gene91597:CDS 30.0%
AAGATGTTCCCAAATGAAAA+AGG - chr7.4:84834575-84834594 MS.gene91597:CDS 30.0%
AAGGATGTGATTGTGAATTT+GGG + chr7.4:84834034-84834053 None:intergenic 30.0%
AATTACAACCGTTGTTTGAT+AGG - chr7.4:84834486-84834505 MS.gene91597:CDS 30.0%
ACGATATTCCTATCAAACAA+CGG + chr7.4:84834497-84834516 None:intergenic 30.0%
AGAACAAACGATGATAAAGT+GGG + chr7.4:84834758-84834777 None:intergenic 30.0%
GAGTAACTTTAATGTGTTCA+TGG + chr7.4:84833911-84833930 None:intergenic 30.0%
GATAGTGAAGATTTGAGAAT+TGG + chr7.4:84834080-84834099 None:intergenic 30.0%
GGATTACATAAATGAAGATG+GGG - chr7.4:84834952-84834971 MS.gene91597:CDS 30.0%
GTGAGAAGTTCACAAATAAT+TGG - chr7.4:84834537-84834556 MS.gene91597:CDS 30.0%
TATGTCAAAGAAAGTAAGAG+GGG + chr7.4:84833964-84833983 None:intergenic 30.0%
! AATAACCACTTTCTGGAAAA+AGG + chr7.4:84834343-84834362 None:intergenic 30.0%
! AGGATTTGAAATAATAGGAG+TGG - chr7.4:84835084-84835103 MS.gene91597:CDS 30.0%
! ATAACCACTTTCTGGAAAAA+GGG + chr7.4:84834342-84834361 None:intergenic 30.0%
! TGAGAATTGGAACAAGTTTT+TGG + chr7.4:84834067-84834086 None:intergenic 30.0%
!! ACTATTTTGGAAATTGTGTG+TGG - chr7.4:84834903-84834922 MS.gene91597:CDS 30.0%
!! AGCAAATGGTGTTATCAAAA+TGG - chr7.4:84834696-84834715 MS.gene91597:CDS 30.0%
!! CTATTTTGGAAATTGTGTGT+GGG - chr7.4:84834904-84834923 MS.gene91597:CDS 30.0%
!! CTTTCGTTTCCTTTTTCATT+TGG + chr7.4:84834587-84834606 None:intergenic 30.0%
!! GAATCTGTTGATTCTAAATG+GGG + chr7.4:84834290-84834309 None:intergenic 30.0%
!! GCAAATGGTGTTATCAAAAT+GGG - chr7.4:84834697-84834716 MS.gene91597:CDS 30.0%
!! GGTGTTTATGAGATTGATTT+TGG - chr7.4:84835124-84835143 MS.gene91597:CDS 30.0%
!! TATTTTGGAAATTGTGTGTG+GGG - chr7.4:84834905-84834924 MS.gene91597:CDS 30.0%
!! TTATGAGATTGATTTTGGGT+GGG - chr7.4:84835129-84835148 MS.gene91597:CDS 30.0%
!! TTTAGAACGTTGTTTCTTGA+AGG - chr7.4:84835277-84835296 MS.gene91597:CDS 30.0%
!! TTTATGAGATTGATTTTGGG+TGG - chr7.4:84835128-84835147 MS.gene91597:CDS 30.0%
!!! TCTTTGACATATTTTGGCTT+AGG - chr7.4:84833973-84833992 MS.gene91597:CDS 30.0%
AAAGGAAACTCCATCATCAT+TGG + chr7.4:84834186-84834205 None:intergenic 35.0%
AACAAAGGTGGAGATAGTTT+CGG - chr7.4:84835159-84835178 MS.gene91597:CDS 35.0%
AAGGAAACTCCATCATCATT+GGG + chr7.4:84834185-84834204 None:intergenic 35.0%
AATTCTTGCAACAAAGGTTG+TGG + chr7.4:84834470-84834489 None:intergenic 35.0%
ATCAGACTCTCCAATGATAA+AGG + chr7.4:84834204-84834223 None:intergenic 35.0%
ATGTGATTGTGAATTTGGGA+GGG + chr7.4:84834030-84834049 None:intergenic 35.0%
CAACACTTTCTTCCTTTATC+CGG - chr7.4:84834110-84834129 MS.gene91597:CDS 35.0%
CAACCATGTTTATCAAAGCT+TGG - chr7.4:84834408-84834427 MS.gene91597:CDS 35.0%
CAATTCAATCCCAATGATGA+TGG - chr7.4:84834173-84834192 MS.gene91597:CDS 35.0%
CATCATCATTGGGATTGAAT+TGG + chr7.4:84834175-84834194 None:intergenic 35.0%
CTTTATCCGGTAAAATCGTT+TGG - chr7.4:84834123-84834142 MS.gene91597:CDS 35.0%
GAAGGATGTGATTGTGAATT+TGG + chr7.4:84834035-84834054 None:intergenic 35.0%
GAGAACAAACGATGATAAAG+TGG + chr7.4:84834759-84834778 None:intergenic 35.0%
GATGGAGTTTCCTTTATCAT+TGG - chr7.4:84834191-84834210 MS.gene91597:CDS 35.0%
GGTTGTAATTCTTGCAACAA+AGG + chr7.4:84834476-84834495 None:intergenic 35.0%
GTAAAGGTGGAATTGAAGTT+GGG - chr7.4:84835224-84835243 MS.gene91597:CDS 35.0%
GTGGATAGAGGTTTAACAAT+TGG - chr7.4:84835181-84835200 MS.gene91597:CDS 35.0%
TAGAAGAAAACACGTTCTAC+TGG + chr7.4:84834005-84834024 None:intergenic 35.0%
TGTTTGGCAAAAGCAATTCA+TGG - chr7.4:84834800-84834819 MS.gene91597:CDS 35.0%
TTGAATTGGATGAATGGTTG+TGG + chr7.4:84834161-84834180 None:intergenic 35.0%
TTGGGATTGAATTGGATGAA+TGG + chr7.4:84834167-84834186 None:intergenic 35.0%
TTTAATGTTGCTCTTGTCGA+TGG + chr7.4:84833886-84833905 None:intergenic 35.0%
! ATAACCCTTTTTCCAGAAAG+TGG - chr7.4:84834335-84834354 MS.gene91597:CDS 35.0%
! ATTTTCCATCAAGAACAGCA+TGG + chr7.4:84834385-84834404 None:intergenic 35.0%
! CAAACGATTTTACCGGATAA+AGG + chr7.4:84834125-84834144 None:intergenic 35.0%
! TGCTTTTGCCAAACAAACAA+GGG + chr7.4:84834795-84834814 None:intergenic 35.0%
! TTTCTGGAAAAAGGGTTATC+TGG + chr7.4:84834334-84834353 None:intergenic 35.0%
! TTTGAAATAATAGGAGTGGC+AGG - chr7.4:84835088-84835107 MS.gene91597:CDS 35.0%
! TTTGGTTGATACAAAACCGT+TGG - chr7.4:84834931-84834950 MS.gene91597:CDS 35.0%
!! AATGAAAAGGGTGTTCTTGA+AGG - chr7.4:84835019-84835038 MS.gene91597:CDS 35.0%
!! ATAAAGGAAGAAAGTGTTGG+AGG + chr7.4:84834109-84834128 None:intergenic 35.0%
!! TAAAGGAAGAAAGTGTTGGA+GGG + chr7.4:84834108-84834127 None:intergenic 35.0%
!! TATGAGATTGATTTTGGGTG+GGG - chr7.4:84835130-84835149 MS.gene91597:CDS 35.0%
!! TTGCTTTTGCCAAACAAACA+AGG + chr7.4:84834796-84834815 None:intergenic 35.0%
!!! AGGGGTTGTTGTTGTTTTTT+GGG + chr7.4:84833946-84833965 None:intergenic 35.0%
!!! GTTGTTTTTTGGGTTGATGA+TGG + chr7.4:84833936-84833955 None:intergenic 35.0%
AAATTGTGTGTGGGGACATT+TGG - chr7.4:84834913-84834932 MS.gene91597:CDS 40.0%
AACTTCTCACCAAGTTCATC+TGG + chr7.4:84834527-84834546 None:intergenic 40.0%
AATGGTTGTGGAGAATCAGA+AGG + chr7.4:84834149-84834168 None:intergenic 40.0%
ACAAACGATGATAAAGTGGG+AGG + chr7.4:84834755-84834774 None:intergenic 40.0%
ACTTCTCACCAAGTTCATCT+GGG + chr7.4:84834526-84834545 None:intergenic 40.0%
AGAAAACACGTTCTACTGGA+TGG + chr7.4:84834001-84834020 None:intergenic 40.0%
AGCGAGACAAAGAAGCTTTA+TGG + chr7.4:84834259-84834278 None:intergenic 40.0%
ATGGTGAGTGCTTATTCCAA+TGG + chr7.4:84834366-84834385 None:intergenic 40.0%
CAACAAAGGTTGTGGTTCTT+CGG + chr7.4:84834462-84834481 None:intergenic 40.0%
CCAATGGAATAACCACTTTC+TGG + chr7.4:84834350-84834369 None:intergenic 40.0%
CCAGAAAGTGGTTATTCCAT+TGG - chr7.4:84834347-84834366 MS.gene91597:CDS 40.0%
GAAACTATCTCCACCTTTGT+TGG + chr7.4:84835160-84835179 None:intergenic 40.0%
GATGTGATTGTGAATTTGGG+AGG + chr7.4:84834031-84834050 None:intergenic 40.0%
GGTAAAGGTGGAATTGAAGT+TGG - chr7.4:84835223-84835242 MS.gene91597:CDS 40.0%
GTGGCAGGATCTAATAGATT+TGG - chr7.4:84835103-84835122 MS.gene91597:CDS 40.0%
TAACCTTGCTCTGCAATCTA+CGG + chr7.4:84834864-84834883 None:intergenic 40.0%
TAGAGGTTTAACAATTGGCC+TGG - chr7.4:84835186-84835205 MS.gene91597:CDS 40.0%
TTCTTGAAGGAGCTAGTGAT+GGG - chr7.4:84835032-84835051 MS.gene91597:CDS 40.0%
! AGAAGGCCAAACGATTTTAC+CGG + chr7.4:84834132-84834151 None:intergenic 40.0%
! AGCCCAAGCTTTGATAAACA+TGG + chr7.4:84834414-84834433 None:intergenic 40.0%
! CGAGACAAAGAAGCTTTATG+GGG + chr7.4:84834257-84834276 None:intergenic 40.0%
! CGGATAAAGGAAGAAAGTGT+TGG + chr7.4:84834112-84834131 None:intergenic 40.0%
! GCGAGACAAAGAAGCTTTAT+GGG + chr7.4:84834258-84834277 None:intergenic 40.0%
! TGCTTATGCCCTTGTTTGTT+TGG - chr7.4:84834784-84834803 MS.gene91597:CDS 40.0%
!!! GAGGGGTTGTTGTTGTTTTT+TGG + chr7.4:84833947-84833966 None:intergenic 40.0%
!!! GTTTTTTGGGTTGATGATGG+AGG + chr7.4:84833933-84833952 None:intergenic 40.0%
AAAGGTGGAGATAGTTTCGG+TGG - chr7.4:84835162-84835181 MS.gene91597:CDS 45.0%
ACTCACCATGCTGTTCTTGA+TGG - chr7.4:84834377-84834396 MS.gene91597:CDS 45.0%
GAGAGCAAAGATGGTAAAGG+TGG - chr7.4:84835211-84835230 MS.gene91597:CDS 45.0%
GAGATAGTTTCGGTGGATAG+AGG - chr7.4:84835169-84835188 MS.gene91597:CDS 45.0%
GCAGAGAGCAAAGATGGTAA+AGG - chr7.4:84835208-84835227 MS.gene91597:CDS 45.0%
GTCAAAGACCCAGATGAACT+TGG - chr7.4:84834515-84834534 MS.gene91597:CDS 45.0%
GTTCTTGAAGGAGCTAGTGA+TGG - chr7.4:84835031-84835050 MS.gene91597:CDS 45.0%
CGAAGAGAGTCTTCGAGCTT+TGG + chr7.4:84834635-84834654 None:intergenic 50.0%
TACCATCTTTGCTCTCTGCC+AGG + chr7.4:84835207-84835226 None:intergenic 50.0%
TCACCGTAGATTGCAGAGCA+AGG - chr7.4:84834858-84834877 MS.gene91597:CDS 50.0%
GTGGGGAAGACCAACAAAGG+TGG - chr7.4:84835147-84835166 MS.gene91597:CDS 55.0%
TGGGTGGGGAAGACCAACAA+AGG - chr7.4:84835144-84835163 MS.gene91597:CDS 55.0%
GGCCTGGCAGAGAGCAAAGA+TGG - chr7.4:84835202-84835221 MS.gene91597:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 84833876 84835315 84833876 ID=MS.gene91597
chr7.4 mRNA 84833876 84835315 84833876 ID=MS.gene91597.t1;Parent=MS.gene91597
chr7.4 exon 84833876 84835315 84833876 ID=MS.gene91597.t1.exon1;Parent=MS.gene91597.t1
chr7.4 CDS 84833876 84835315 84833876 ID=cds.MS.gene91597.t1;Parent=MS.gene91597.t1
Gene Sequence

>MS.gene91597

ATGGATTCCATCGACAAGAGCAACATTAAAATCCATGAACACATTAAAGTTACTCCTCCATCATCAACCCAAAAAACAACAACAACCCCTCTTACTTTCTTTGACATATTTTGGCTTAGGTTCCATCCAGTAGAACGTGTTTTCTTCTACACCCTCCCAAATTCACAATCACATCCTTCTTTCTTTTTCCAAAAACTTGTTCCAATTCTCAAATCTTCACTATCTTTAACCCTCCAACACTTTCTTCCTTTATCCGGTAAAATCGTTTGGCCTTCTGATTCTCCACAACCATTCATCCAATTCAATCCCAATGATGATGGAGTTTCCTTTATCATTGGAGAGTCTGATTTAGATTTCAATCATGTTATTGAAAATTCACCCCATAAAGCTTCTTTGTCTCGCTCTTTTATTCCCCATTTAGAATCAACAGATTCTTTTGCTTCTATTATCTCAGTCCAGATAACCCTTTTTCCAGAAAGTGGTTATTCCATTGGAATAAGCACTCACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTTATCAAAGCTTGGGCTTATCTATGCAACAAAAACATTGAAACCGAAGAACCACAACCTTTGTTGCAAGAATTACAACCGTTGTTTGATAGGAATATCGTCAAAGACCCAGATGAACTTGGTGAGAAGTTCACAAATAATTGGAGAGAGATCGTTACTAAGATGTTCCCAAATGAAAAAGGAAACGAAAGATGCTTGAAGATTTTAGCTTTTGAACCAAAGCTCGAAGACTCTCTTCGTGCTACGTTCAAGCTCACACGTGAAGATTTGAACAAGATAAAGCAAATGGTGTTATCAAAATGGGAATTATTGGACACAAATGAATTAAATTCTAAGCCTCCCACTTTATCATCGTTTGTTCTCACATGTGCTTATGCCCTTGTTTGTTTGGCAAAAGCAATTCATGGAATTAAAATGGAGAAAGAGAAGTTTGCATTTGTATTCACCGTAGATTGCAGAGCAAGGTTAGAGCCATCACTACCAAATAACTATTTTGGAAATTGTGTGTGGGGACATTTGGTTGATACAAAACCGTTGGATTACATAAATGAAGATGGGGTGTTTTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGAAAAGGGTGTTCTTGAAGGAGCTAGTGATGGGTTTAGTAAATTCAATTATTTGTCAAGTGAAGGATTTGAAATAATAGGAGTGGCAGGATCTAATAGATTTGGTGTTTATGAGATTGATTTTGGGTGGGGAAGACCAACAAAGGTGGAGATAGTTTCGGTGGATAGAGGTTTAACAATTGGCCTGGCAGAGAGCAAAGATGGTAAAGGTGGAATTGAAGTTGGGCTTGTTCTAGATAAGAATGTAATGGATCTCTTTAGAACGTTGTTTCTTGAAGGACTTCACATTAATTGA

Protein sequence

>MS.gene91597.t1

MDSIDKSNIKIHEHIKVTPPSSTQKTTTTPLTFFDIFWLRFHPVERVFFYTLPNSQSHPSFFFQKLVPILKSSLSLTLQHFLPLSGKIVWPSDSPQPFIQFNPNDDGVSFIIGESDLDFNHVIENSPHKASLSRSFIPHLESTDSFASIISVQITLFPESGYSIGISTHHAVLDGKSSTMFIKAWAYLCNKNIETEEPQPLLQELQPLFDRNIVKDPDELGEKFTNNWREIVTKMFPNEKGNERCLKILAFEPKLEDSLRATFKLTREDLNKIKQMVLSKWELLDTNELNSKPPTLSSFVLTCAYALVCLAKAIHGIKMEKEKFAFVFTVDCRARLEPSLPNNYFGNCVWGHLVDTKPLDYINEDGVFLVAKCIHEKIKMINEKGVLEGASDGFSKFNYLSSEGFEIIGVAGSNRFGVYEIDFGWGRPTKVEIVSVDRGLTIGLAESKDGKGGIEVGLVLDKNVMDLFRTLFLEGLHIN