AlfalfaGEDB | MS.gene021910

M. sativa cultivar XinJiangDaYe / MS.gene021910

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021910.t1	RHN44407.1	86	480	67	0	1	480	1	480	4.90E-235	823.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021910.t1	Q940Z5	37.4	479	270	14	8	477	10	467	1.9e-78	294.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021910.t1	A0A396H0H8	86.0	480	67	0	1	480	1	480	3.6e-235	823.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000764	MS.gene021910	PPI
MS.gene007831	MS.gene021910	PPI
MS.gene011796	MS.gene021910	PPI
MS.gene011801	MS.gene021910	PPI
MS.gene011837	MS.gene021910	PPI
MS.gene012360	MS.gene021910	PPI
MS.gene013787	MS.gene021910	PPI
MS.gene021906	MS.gene021910	PPI
MS.gene021910	MS.gene50356	PPI
MS.gene021910	MS.gene87536	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021910.t1	MTR_7g013850	74.948	483	118	2	1	480	1	483	0.0	743
MS.gene021910.t1	MTR_7g014200	58.592	483	179	11	1	477	1	468	0.0	541
MS.gene021910.t1	MTR_7g014160	56.757	481	193	10	5	480	6	476	0.0	530
MS.gene021910.t1	MTR_7g014610	56.907	485	193	12	1	478	1	476	3.38e-175	501
MS.gene021910.t1	MTR_7g014620	50.753	465	191	9	19	480	6	435	1.57e-146	426
MS.gene021910.t1	MTR_7g014630	49.593	369	161	8	6	361	7	363	1.37e-108	327
MS.gene021910.t1	MTR_6g015320	39.709	481	259	10	1	477	1	454	2.82e-107	327
MS.gene021910.t1	MTR_6g015315	40.211	475	259	11	4	477	2	452	2.87e-105	321
MS.gene021910.t1	MTR_6g015850	39.959	488	251	15	1	477	1	457	3.92e-99	306
MS.gene021910.t1	MTR_6g015830	40.693	462	233	13	25	477	31	460	1.44e-97	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021910.t1	AT5G39050	37.838	481	269	14	6	477	8	467	9.13e-92	287
MS.gene021910.t1	AT3G29590	36.874	499	242	13	1	477	1	448	4.66e-90	282
MS.gene021910.t1	AT3G29635	37.637	457	255	12	24	477	25	454	5.37e-89	280
MS.gene021910.t1	AT5G39080	37.630	481	270	15	1	474	1	458	1.77e-87	276
MS.gene021910.t1	AT3G29670	37.578	479	258	14	8	477	3	449	2.23e-86	273
MS.gene021910.t1	AT5G39090	36.042	480	271	12	1	477	1	447	1.23e-84	268
MS.gene021910.t1	AT5G61160	33.475	472	284	13	8	475	3	448	1.17e-78	253
MS.gene021910.t1	AT3G29680	35.158	475	270	14	4	473	2	443	1.15e-72	237
MS.gene021910.t1	AT1G03940	29.940	501	290	16	1	477	1	464	1.45e-60	206
MS.gene021910.t1	AT1G03495	31.117	376	208	15	1	359	1	342	5.91e-39	144

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Find 55 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCTTACCTGCTATA+TGG	0.318914	7.1:-81853215	None:intergenic
AAATGATGACGGAGTTTCGT+TGG	0.551389	7.1:+81853278	MS.gene021910:CDS
AAATGGAACAATATTGAAGA+AGG	0.523989	7.1:+81853816	MS.gene021910:CDS
AACGAAACTCCGTCATCATT+TGG	0.340462	7.1:-81853276	None:intergenic
AAGTGAGAGGAAGAGATAAT+TGG	0.338652	7.1:-81853044	None:intergenic
ACAAAAGTGTGTTGTCCAAA+TGG	0.432381	7.1:+81853799	MS.gene021910:CDS
ACAAAAGTTGACAATTTCTT+AGG	0.262126	7.1:-81853858	None:intergenic
ACACACCATGCTGTTCTTGA+TGG	0.421878	7.1:+81853483	MS.gene021910:CDS
ACAGAAAGTAGAGATTTGAA+AGG	0.576880	7.1:+81854314	MS.gene021910:CDS
AGAAGAAAATACGTTCAACT+GGG	0.676059	7.1:-81853095	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATCTTACCTGCTATA+TGG	-	chr7.1:81853218-81853237	None:intergenic	30.0%
ACAGAAAGTAGAGATTTGAA+AGG	+	chr7.1:81854314-81854333	MS.gene021910:CDS	30.0%
AGAAGAAAATACGTTCAACT+GGG	-	chr7.1:81853098-81853117	None:intergenic	30.0%
AGTTTCCTTCGATAAAATTG+TGG	+	chr7.1:81853326-81853345	MS.gene021910:CDS	30.0%
ATATAGCAGGTAAGATTGTT+TGG	+	chr7.1:81853217-81853236	MS.gene021910:CDS	30.0%
ATTACTTCCCTACTCAAAAA+GGG	-	chr7.1:81853603-81853622	None:intergenic	30.0%
CCAATTTCCGAAAACTATTT+CGG	+	chr7.1:81853999-81854018	MS.gene021910:CDS	30.0%
CTCAAAAAGGGTTTCAAAAA+AGG	-	chr7.1:81853591-81853610	None:intergenic	30.0%
GAAGACTTTACAAATGAAGA+TGG	+	chr7.1:81854059-81854078	MS.gene021910:CDS	30.0%
GATAATTGGTATGCAGAATT+AGG	-	chr7.1:81853033-81853052	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	81852979	81854421	81852979	ID=MS.gene021910
chr7.1	mRNA	81852979	81854421	81852979	ID=MS.gene021910.t1;Parent=MS.gene021910
chr7.1	exon	81852979	81854421	81852979	ID=MS.gene021910.t1.exon1;Parent=MS.gene021910.t1
chr7.1	CDS	81852979	81854421	81852979	ID=cds.MS.gene021910.t1;Parent=MS.gene021910.t1

Gene Sequence

>MS.gene021910

ATGGCTGCTGCAAACAATCACATCAAAATTCATGAAGAATGTAAAGTTTCTCCTAATTCTGCATACCAATTATCTCTTCCTCTCACTTTCTTAGACTTGAATTGGCTAAGATTTCACCCAGTTGAACGTATTTTCTTCTACCCTCTCCCAAATTCACAATCACACCCTACTTTCTTCTTTCAAAACCTTGTTCCAAAACTCAAATCTTCACTCTCTTTAACCCTCCAACACTTTCTCCATATAGCAGGTAAGATTGTTTGGCCTTCTGATTCTCCAAAACCAATCATTCAGTTCAATCCAAATGATGACGGAGTTTCGTTGGTCTTAGCACAATATGATGACGATGTAGTTTCCTTCGATAAAATTGTGGAGCAGAATTCACCACAAGAAGCTTCTTTATCTCGTTCTTTTGTACCTCACTTAGAATCAACAGATTCTTTTGCTTCTATCATTTCAATTCAGATAACCTTTTTTCCGAAAAACGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATATGTAAATCTCTTGAAGAAGAAACACAATCATCAAATTTAGAGCCTTTTTTGAAACCCTTTTTGAGTAGGGAAGTAATCAAGGATCCAAATGGTTTTGAGAGTGAGATCATAAATTTTTGGAACAAAATCTCAACACATTTTGATCAGGGCAACGTGAGAAGCTTAAAGATTATGTCAAATTTTTTTGAACCAAAAGTTAAGGATTCCGTTCAAGTCGCATTCAAGCTCACACATGAAGATATGGAGAAATTAAACAAAAGTGTGTTGTCCAAATGGAACAATATTGAAGAAGGATCACAAGAACAAGAACTACCTAAGAAATTGTCAACTTTTGTTCTTACATGTTCTTATGTTTCCGTTTGCATAGCAAAAGCAAAACAACAATCTGAAAGCAATCAAAAACAGAAGTTTTGTTTTGGTTTTGCAGTGGATATCAGATCAAGATTAGACCCACCAATTTCCGAAAACTATTTCGGAAATTGTGTAATTAGTCATATAATTAATATTGAGCCAGAAGACTTTACAAATGAAGATGGAGTTGTGATTGTTGCAAAGAAAATTTATAGCACAATTAAAAAAATGGATAAGGGTTTTCTTGATGGTGTAGATACATTGTTTTCTAGATATATGGAAATTGTTGGTGAAGGAATTCAAGCAATAGTAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGCAAAAGTGGAAACTACTTCAGTTGATAGAGGAATAACAATTGGATTAACAGAAAGTAGAGATTTGAAAGGTGGTGTTGAATTTGGACTTGTTCTTGATAAGAATGTGATGAATTTTTTTCATACCTTTTTTCATGAAGGGTTATGCTTTGATTGA

Protein sequence

>MS.gene021910.t1

MAAANNHIKIHEECKVSPNSAYQLSLPLTFLDLNWLRFHPVERIFFYPLPNSQSHPTFFFQNLVPKLKSSLSLTLQHFLHIAGKIVWPSDSPKPIIQFNPNDDGVSLVLAQYDDDVVSFDKIVEQNSPQEASLSRSFVPHLESTDSFASIISIQITFFPKNGFSIGISTHHAVLDGKSSTMFIKAWSSICKSLEEETQSSNLEPFLKPFLSREVIKDPNGFESEIINFWNKISTHFDQGNVRSLKIMSNFFEPKVKDSVQVAFKLTHEDMEKLNKSVLSKWNNIEEGSQEQELPKKLSTFVLTCSYVSVCIAKAKQQSESNQKQKFCFGFAVDIRSRLDPPISENYFGNCVISHIINIEPEDFTNEDGVVIVAKKIYSTIKKMDKGFLDGVDTLFSRYMEIVGEGIQAIVVAGSTRFGVYEIDFGFGRPAKVETTSVDRGITIGLTESRDLKGGVEFGLVLDKNVMNFFHTFFHEGLCFD