AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021917

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021917.t1 MTR_7g014200 75.214 468 113 2 1 465 1 468 0.0 735
MS.gene021917.t1 MTR_7g014160 70.488 471 129 4 4 466 6 474 0.0 687
MS.gene021917.t1 MTR_7g014610 72.327 477 122 4 1 467 1 477 0.0 682
MS.gene021917.t1 MTR_7g014620 63.193 451 140 5 19 466 6 433 0.0 545
MS.gene021917.t1 MTR_7g013850 55.301 481 197 8 2 466 3 481 2.17e-174 498
MS.gene021917.t1 MTR_7g014630 67.616 281 84 2 5 278 7 287 1.39e-130 382
MS.gene021917.t1 MTR_7g014180 92.486 173 13 0 1 173 1 173 5.61e-110 323
MS.gene021917.t1 MTR_6g015320 41.880 468 242 13 7 465 8 454 1.18e-106 324
MS.gene021917.t1 MTR_6g015850 40.693 462 255 10 6 465 13 457 1.65e-103 317
MS.gene021917.t1 MTR_6g015315 40.347 461 258 9 8 465 6 452 1.03e-102 314
MS.gene021917.t1 MTR_6g015815 40.308 454 251 9 17 465 22 460 8.22e-101 310
MS.gene021917.t1 MTR_7g014230 40.938 469 249 14 8 464 5 457 1.05e-100 309
MS.gene021917.t1 MTR_6g015830 41.064 470 239 15 9 465 16 460 1.77e-100 309
MS.gene021917.t1 MTR_7g014330 39.407 472 258 13 8 467 3 458 2.62e-98 303
MS.gene021917.t1 MTR_7g014250 39.140 465 265 11 8 465 3 456 2.14e-95 295
MS.gene021917.t1 MTR_7g014670 70.879 182 52 1 284 465 79 259 2.33e-90 276
MS.gene021917.t1 MTR_3g028210 33.615 473 284 12 7 465 8 464 2.51e-74 241
MS.gene021917.t1 MTR_7g015860 33.056 481 273 12 4 461 2 456 4.78e-67 222
MS.gene021917.t1 MTR_2g089765 31.328 482 293 13 7 465 16 482 8.88e-67 222
MS.gene021917.t1 MTR_7g014360 36.000 400 214 11 77 467 22 388 2.00e-66 218
MS.gene021917.t1 MTR_2g089735 33.333 441 260 13 41 465 39 461 3.54e-61 207
MS.gene021917.t1 MTR_3g087640 30.689 479 295 15 8 465 10 472 3.75e-57 196
MS.gene021917.t1 MTR_2g089670 31.020 461 275 12 24 465 41 477 4.36e-57 196
MS.gene021917.t1 MTR_2g089650 30.290 482 292 14 4 465 6 463 1.06e-54 189
MS.gene021917.t1 MTR_6g015310 34.848 396 191 13 51 443 2 333 1.45e-54 186
MS.gene021917.t1 MTR_2g089755 30.886 463 271 13 28 465 37 475 6.20e-54 188
MS.gene021917.t1 MTR_8g012750 30.290 482 297 13 7 463 3 470 8.55e-54 187
MS.gene021917.t1 MTR_2g089665 27.171 449 195 15 7 439 2 334 5.07e-34 131
MS.gene021917.t1 MTR_3g435300 31.408 277 168 6 8 272 4 270 6.32e-34 129
MS.gene021917.t1 MTR_7g014310 28.947 342 173 9 115 450 31 308 9.68e-33 126
MS.gene021917.t1 MTR_7g086000 26.052 499 286 20 6 465 3 457 8.45e-22 98.2
MS.gene021917.t1 MTR_6g045553 25.963 493 279 20 6 455 13 462 4.39e-21 95.9
MS.gene021917.t1 MTR_5g081960 25.630 476 301 20 15 454 14 472 9.70e-21 95.1
MS.gene021917.t1 MTR_8g075610 24.194 434 271 19 44 463 30 419 1.11e-19 91.3
MS.gene021917.t1 MTR_3g070170 25.319 470 304 18 7 454 12 456 1.55e-19 91.3
MS.gene021917.t1 MTR_8g079950 24.324 444 278 14 10 441 8 405 2.64e-19 90.5
MS.gene021917.t1 MTR_4g094838 26.374 455 249 17 19 447 19 413 4.49e-19 89.7
MS.gene021917.t1 MTR_8g079970 24.379 443 279 17 10 441 8 405 1.93e-18 87.8
MS.gene021917.t1 MTR_3g026950 24.299 428 265 16 64 462 51 448 1.10e-17 85.5
MS.gene021917.t1 MTR_4g127650 22.973 444 293 14 41 465 43 456 3.94e-16 80.9
MS.gene021917.t1 MTR_2g007880 24.257 404 255 14 67 457 74 439 4.34e-16 80.9
MS.gene021917.t1 MTR_5g084850 24.330 448 266 18 10 441 8 398 7.36e-16 80.1
MS.gene021917.t1 MTR_8g079980 25.676 444 271 17 10 441 8 404 1.82e-15 78.6
MS.gene021917.t1 MTR_2g015430 22.418 455 290 19 7 439 2 415 1.09e-14 76.3
MS.gene021917.t1 MTR_4g097090 23.299 485 298 19 23 465 4 456 3.24e-14 75.1
MS.gene021917.t1 MTR_4g094842 25.971 412 236 18 64 447 59 429 3.33e-14 74.7
MS.gene021917.t1 MTR_3g098980 25.000 412 245 17 67 460 66 431 5.12e-14 74.3
MS.gene021917.t1 MTR_3g049150 23.444 482 310 20 7 465 2 447 5.72e-14 74.3
MS.gene021917.t1 MTR_7g085990 22.607 491 313 23 7 465 2 457 8.28e-14 73.6
MS.gene021917.t1 MTR_3g026310 24.009 454 279 16 20 447 16 429 1.48e-13 72.8
MS.gene021917.t1 MTR_1g053315 22.811 434 279 19 44 458 58 454 3.34e-13 72.0
MS.gene021917.t1 MTR_3g102010 22.078 462 311 15 13 459 15 442 1.02e-12 70.5
MS.gene021917.t1 MTR_8g096530 22.511 462 313 16 1 457 1 422 1.04e-12 70.1
MS.gene021917.t1 MTR_3g101960 22.462 463 298 18 13 454 14 436 1.08e-12 70.1
MS.gene021917.t1 MTR_8g467590 24.009 429 262 15 6 417 4 385 1.40e-12 69.7
MS.gene021917.t1 MTR_4g055170 24.802 379 232 17 50 414 59 398 1.70e-12 69.7
MS.gene021917.t1 MTR_3g102020 23.427 461 307 19 13 459 14 442 1.93e-12 69.3
MS.gene021917.t1 MTR_4g094832 27.003 337 192 16 127 447 113 411 6.96e-12 67.4
MS.gene021917.t1 MTR_0190s0020 23.716 409 242 16 64 447 60 423 1.82e-11 66.2
MS.gene021917.t1 MTR_8g041770 22.049 449 294 14 25 465 27 427 1.90e-11 66.2
MS.gene021917.t1 MTR_4g022825 22.980 396 267 11 64 447 52 421 2.53e-11 65.9
MS.gene021917.t1 MTR_7g014340 50.704 71 29 2 8 75 3 70 4.16e-11 60.1
MS.gene021917.t1 MTR_3g435290 42.857 70 38 1 396 465 50 117 4.20e-11 60.5
MS.gene021917.t1 MTR_7g014220 55.556 54 21 1 24 77 14 64 5.16e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021917.t1 AT5G39050 38.316 475 264 13 5 465 8 467 6.00e-95 295
MS.gene021917.t1 AT3G29635 37.613 444 257 9 26 465 27 454 9.85e-91 283
MS.gene021917.t1 AT5G39080 36.287 474 268 13 5 462 3 458 1.60e-90 283
MS.gene021917.t1 AT3G29590 37.263 475 256 13 3 465 4 448 1.27e-89 280
MS.gene021917.t1 AT3G29670 35.897 468 272 9 6 465 2 449 9.87e-89 278
MS.gene021917.t1 AT5G39090 36.797 462 261 12 12 465 9 447 9.29e-88 276
MS.gene021917.t1 AT5G61160 33.261 463 286 10 7 463 3 448 3.19e-78 251
MS.gene021917.t1 AT3G29680 34.475 438 268 8 26 461 23 443 5.88e-77 248
MS.gene021917.t1 AT1G03940 32.510 486 284 15 1 465 2 464 1.04e-66 221
MS.gene021917.t1 AT1G03495 33.140 344 196 13 9 337 10 334 4.38e-42 153
MS.gene021917.t1 AT5G23940 25.322 466 298 20 7 454 5 438 2.58e-22 99.8
MS.gene021917.t1 AT5G48930 23.830 470 305 21 7 463 3 432 4.30e-18 86.7
MS.gene021917.t1 AT3G29720 30.622 209 116 7 104 301 26 216 7.82e-18 82.8
MS.gene021917.t1 AT3G29690 28.758 153 101 3 314 465 33 178 3.07e-17 80.1
MS.gene021917.t1 AT1G28680 21.972 355 249 7 67 420 62 389 4.21e-16 80.9
MS.gene021917.t1 AT1G31490 22.348 443 290 15 13 443 14 414 5.75e-15 77.4
MS.gene021917.t1 AT5G41040 23.607 377 211 17 67 417 69 394 1.38e-14 76.3
MS.gene021917.t1 AT5G41040 23.607 377 211 17 67 417 85 410 1.53e-14 75.9
MS.gene021917.t1 AT5G42830 23.430 414 269 17 62 459 59 440 8.24e-14 73.6
MS.gene021917.t1 AT5G07850 21.975 405 275 11 28 421 31 405 1.05e-13 73.6
MS.gene021917.t1 AT3G50280 23.206 418 253 15 26 421 25 396 1.24e-11 67.0
MS.gene021917.t1 AT2G25150 22.573 412 265 16 67 457 67 445 2.70e-11 65.9

Find 76 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATATTGGAAACTGTATT+TGG 0.115652 7.1:-81672646 MS.gene021917:CDS
GGAGGGTCTGATTGTGAATT+TGG 0.190328 7.1:+81673490 None:intergenic
CCAATATAGTTATTTGTTAT+TGG 0.192492 7.1:+81672659 None:intergenic
GAATTTGTTGATTCCAAATA+TGG 0.206007 7.1:+81673238 None:intergenic
GAAAGTGAAGATTTAAGATT+TGG 0.228104 7.1:+81673445 None:intergenic
CGAACACAGTCTTTGAGTTT+TGG 0.272734 7.1:+81672911 None:intergenic
CAATAGAGTTGGTGTCTCTT+TGG 0.272806 7.1:+81673066 None:intergenic
CAAAATTATAAAGAGAAGTT+TGG 0.274109 7.1:-81672722 MS.gene021917:CDS
CTTTAGCTGGTAACATCGTT+TGG 0.278608 7.1:-81673399 MS.gene021917:CDS
CGAGACAAAGAAGCTTCTTT+TGG 0.294661 7.1:+81673271 None:intergenic
CCAATAACAAATAACTATAT+TGG 0.312347 7.1:-81672659 MS.gene021917:CDS
ATGATTTCCCTGTTGAATAA+AGG 0.315079 7.1:+81673031 None:intergenic
CTATATTGGAAACTGTATTT+GGG 0.326422 7.1:-81672645 MS.gene021917:CDS
TTGATCGAGTTATTTCCATT+TGG 0.330227 7.1:+81673001 None:intergenic
TGATCGAGTTATTTCCATTT+GGG 0.330700 7.1:+81673002 None:intergenic
TAACCTCAAACGCGAAGATT+TGG 0.330845 7.1:-81672879 MS.gene021917:CDS
TGAGAGAAATTGAGGTTGTT+TGG 0.331680 7.1:+81673575 None:intergenic
AAGAAGTACCCAACTCAAAA+AGG 0.347968 7.1:-81672968 MS.gene021917:CDS
AGTTAGAACCTTTATTCAAC+AGG 0.363008 7.1:-81673039 MS.gene021917:CDS
GTTGCAGGGTCTAATAGATT+TGG 0.368311 7.1:-81672443 MS.gene021917:CDS
TTTAGCTGGTAACATCGTTT+GGG 0.399158 7.1:-81673398 MS.gene021917:CDS
AATAAAGATGATAAATGAAA+AGG 0.406139 7.1:-81672543 MS.gene021917:CDS
AATCATATTCATCAAAGCTT+GGG 0.406333 7.1:-81673116 MS.gene021917:CDS
TTGTGTTTGCTGTAGATTGT+AGG 0.411131 7.1:-81672697 MS.gene021917:CDS
CAATCATATTCATCAAAGCT+TGG 0.416022 7.1:-81673117 MS.gene021917:CDS
GAGGGTCTGATTGTGAATTT+GGG 0.419806 7.1:+81673491 None:intergenic
TAGAAGAAGATGTATTCTAT+TGG 0.422738 7.1:+81673520 None:intergenic
CAACACTTTCTTCCTTTAGC+TGG 0.427381 7.1:-81673412 MS.gene021917:CDS
AGCAAAGAAACACCATCATT+TGG 0.428907 7.1:+81673340 None:intergenic
ACAATTGTTTGAAAGAAGAA+TGG 0.432995 7.1:+81673469 None:intergenic
TATCCAAATCTTCGCGTTTG+AGG 0.436406 7.1:+81672876 None:intergenic
GTATGACATCGATCTTGGTT+GGG 0.442964 7.1:-81672417 MS.gene021917:CDS
ACTCATCATGCTGTTGTTGA+TGG 0.443038 7.1:-81673148 MS.gene021917:CDS
GGAAGTGGTGGAGTTGAAGT+TGG 0.449076 7.1:-81672323 MS.gene021917:CDS
ATAAAGATGATAAATGAAAA+GGG 0.449987 7.1:-81672542 MS.gene021917:CDS
TAGAGGTTTAGCCATTGGTT+TGG 0.455999 7.1:-81672360 MS.gene021917:CDS
GACACTATTTCCACCTTGGT+TGG 0.465401 7.1:+81672389 None:intergenic
CATTCTTGTTTGACAAGAGA+AGG 0.474542 7.1:-81672482 MS.gene021917:CDS
ATATAGTTATTTGTTATTGG+TGG 0.476303 7.1:+81672662 None:intergenic
GAAGTGGTGGAGTTGAAGTT+GGG 0.477101 7.1:-81672322 MS.gene021917:CDS
GGAGTGTATGACATCGATCT+TGG 0.486790 7.1:-81672422 MS.gene021917:CDS
GAAATCATTCAAGACCCAAA+TGG 0.494774 7.1:-81673016 MS.gene021917:CDS
ATAGATAGAGGTTTAGCCAT+TGG 0.495902 7.1:-81672365 MS.gene021917:CDS
GAGGTTGTTTGGCTTGATGA+TGG 0.497777 7.1:+81673586 None:intergenic
GAAATAGTGTCGATAGATAG+AGG 0.506319 7.1:-81672377 MS.gene021917:CDS
TTTGGATAATATAAAGCAAA+GGG 0.509625 7.1:-81672861 MS.gene021917:CDS
GGTTTGGCAGATAGCAAAGA+TGG 0.516069 7.1:-81672344 MS.gene021917:CDS
GTCTGATTGTGAATTTGGGA+GGG 0.517251 7.1:+81673495 None:intergenic
CAAACGATGTTACCAGCTAA+AGG 0.520252 7.1:+81673400 None:intergenic
ATACAATACACACCAAATGA+TGG 0.525854 7.1:-81673352 MS.gene021917:CDS
AGAAGATGTATTCTATTGGA+TGG 0.532365 7.1:+81673524 None:intergenic
TATGACATCGATCTTGGTTG+GGG 0.533592 7.1:-81672416 MS.gene021917:CDS
TGTATGACATCGATCTTGGT+TGG 0.535357 7.1:-81672418 MS.gene021917:CDS
CAGCTAAAGGAAGAAAGTGT+TGG 0.536065 7.1:+81673413 None:intergenic
TATCGACACTATTTCCACCT+TGG 0.537400 7.1:+81672385 None:intergenic
GGTCTGATTGTGAATTTGGG+AGG 0.538271 7.1:+81673494 None:intergenic
TCTAACTCTTGCAATAGAGT+TGG 0.540105 7.1:+81673055 None:intergenic
ATTGTTTGAAAGAAGAATGG+AGG 0.547496 7.1:+81673472 None:intergenic
AGCAAAGGGTGTTATCAACA+TGG 0.567130 7.1:-81672847 MS.gene021917:CDS
ATTTGGATAATATAAAGCAA+AGG 0.581790 7.1:-81672862 MS.gene021917:CDS
TATATTGGAAACTGTATTTG+GGG 0.583108 7.1:-81672644 MS.gene021917:CDS
GCAGATAGCAAAGATGGAAG+TGG 0.586790 7.1:-81672338 MS.gene021917:CDS
CTAAAGGAAGAAAGTGTTGG+AGG 0.593641 7.1:+81673416 None:intergenic
TTTGCTATCTGCCAAACCAA+TGG 0.594252 7.1:+81672349 None:intergenic
ATGATGAGTGCTTATTCCAA+TGG 0.600520 7.1:+81673162 None:intergenic
TTGTTTGAAAGAAGAATGGA+GGG 0.604549 7.1:+81673473 None:intergenic
GCAAAGGGTGTTATCAACAT+GGG 0.614173 7.1:-81672846 MS.gene021917:CDS
GATAGCAAAGATGGAAGTGG+TGG 0.619907 7.1:-81672335 MS.gene021917:CDS
TTGCTGTAGATTGTAGGACA+AGG 0.630737 7.1:-81672691 MS.gene021917:CDS
GTTAGAACCTTTATTCAACA+GGG 0.632568 7.1:-81673038 MS.gene021917:CDS
GTTGTTTGGCTTGATGATGG+AGG 0.643269 7.1:+81673589 None:intergenic
TAAAGGAAGAAAGTGTTGGA+GGG 0.658167 7.1:+81673417 None:intergenic
ATATTGGAAACTGTATTTGG+GGG 0.674502 7.1:-81672643 MS.gene021917:CDS
TGGTTGGGGAAAACCAACCA+AGG 0.692930 7.1:-81672402 MS.gene021917:CDS
TTGGGGAAAACCAACCAAGG+TGG 0.693644 7.1:-81672399 MS.gene021917:CDS
CTAACGAATAAGCACAAGCG+AGG 0.716514 7.1:+81672774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGATGATAAATGAAA+AGG - chr7.1:81673347-81673366 MS.gene021917:CDS 15.0%
!! ATAAAGATGATAAATGAAAA+GGG - chr7.1:81673348-81673367 MS.gene021917:CDS 15.0%
!!! CTTTATAATTTTGAACTTTA+TGG + chr7.1:81673161-81673180 None:intergenic 15.0%
!!! TCTTCTTTTATAAAATCTAA+CGG + chr7.1:81673291-81673310 None:intergenic 15.0%
!!! TTAGATTTTATAAAAGAAGA+TGG - chr7.1:81673291-81673310 MS.gene021917:CDS 15.0%
!! ATTTGGATAATATAAAGCAA+AGG - chr7.1:81673028-81673047 MS.gene021917:CDS 20.0%
!! CAAAATTATAAAGAGAAGTT+TGG - chr7.1:81673168-81673187 MS.gene021917:CDS 20.0%
!! CCAATAACAAATAACTATAT+TGG - chr7.1:81673231-81673250 MS.gene021917:CDS 20.0%
!! TTTGGATAATATAAAGCAAA+GGG - chr7.1:81673029-81673048 MS.gene021917:CDS 20.0%
!!! ATATAGTTATTTGTTATTGG+TGG + chr7.1:81673231-81673250 None:intergenic 20.0%
!!! CCAATATAGTTATTTGTTAT+TGG + chr7.1:81673234-81673253 None:intergenic 20.0%
! AATCATATTCATCAAAGCTT+GGG - chr7.1:81672774-81672793 MS.gene021917:CDS 25.0%
! ACAATTGTTTGAAAGAAGAA+TGG + chr7.1:81672424-81672443 None:intergenic 25.0%
! ACTATATTGGAAACTGTATT+TGG - chr7.1:81673244-81673263 MS.gene021917:CDS 25.0%
! CTATATTGGAAACTGTATTT+GGG - chr7.1:81673245-81673264 MS.gene021917:CDS 25.0%
! TAGAAGAAGATGTATTCTAT+TGG + chr7.1:81672373-81672392 None:intergenic 25.0%
! TATATTGGAAACTGTATTTG+GGG - chr7.1:81673246-81673265 MS.gene021917:CDS 25.0%
!! GAAAGTGAAGATTTAAGATT+TGG + chr7.1:81672448-81672467 None:intergenic 25.0%
!! TCGTTCTTTTATACCATATT+TGG - chr7.1:81672639-81672658 MS.gene021917:CDS 25.0%
!! TTGGTGTGTATTGTATTTTT+GGG + chr7.1:81672534-81672553 None:intergenic 25.0%
!!! AAAAACCACTTTTTGGAAAA+AGG + chr7.1:81672708-81672727 None:intergenic 25.0%
!!! AAAACCACTTTTTGGAAAAA+GGG + chr7.1:81672707-81672726 None:intergenic 25.0%
!!! AGAGAAGGATTTGAAATTTT+TGG - chr7.1:81673423-81673442 MS.gene021917:CDS 25.0%
!!! GAATTTGTTGATTCCAAATA+TGG + chr7.1:81672655-81672674 None:intergenic 25.0%
!!! TCACTTTTTTCGACATATTT+TGG - chr7.1:81672335-81672354 MS.gene021917:CDS 25.0%
!!! TTTAGCACATTGTTTTATGA+AGG - chr7.1:81673621-81673640 MS.gene021917:CDS 25.0%
!!! TTTGGTGTGTATTGTATTTT+TGG + chr7.1:81672535-81672554 None:intergenic 25.0%
!!! TTTTTGGAAAAAGGGTTATT+TGG + chr7.1:81672699-81672718 None:intergenic 25.0%
AGAAGATGTATTCTATTGGA+TGG + chr7.1:81672369-81672388 None:intergenic 30.0%
AGTTAGAACCTTTATTCAAC+AGG - chr7.1:81672851-81672870 MS.gene021917:CDS 30.0%
ATACAATACACACCAAATGA+TGG - chr7.1:81672538-81672557 MS.gene021917:CDS 30.0%
ATATTGGAAACTGTATTTGG+GGG - chr7.1:81673247-81673266 MS.gene021917:CDS 30.0%
ATGATTTCCCTGTTGAATAA+AGG + chr7.1:81672862-81672881 None:intergenic 30.0%
ATTGTTTGAAAGAAGAATGG+AGG + chr7.1:81672421-81672440 None:intergenic 30.0%
CAATCATATTCATCAAAGCT+TGG - chr7.1:81672773-81672792 MS.gene021917:CDS 30.0%
GAAAAAAGTGAGAGAAATTG+AGG + chr7.1:81672326-81672345 None:intergenic 30.0%
GTTAGAACCTTTATTCAACA+GGG - chr7.1:81672852-81672871 MS.gene021917:CDS 30.0%
TTGTTTGAAAGAAGAATGGA+GGG + chr7.1:81672420-81672439 None:intergenic 30.0%
! ACAAACGATGATAGATTTTG+TGG + chr7.1:81673096-81673115 None:intergenic 30.0%
! ATAACCCTTTTTCCAAAAAG+TGG - chr7.1:81672700-81672719 MS.gene021917:CDS 30.0%
! TGATCGAGTTATTTCCATTT+GGG + chr7.1:81672891-81672910 None:intergenic 30.0%
! TTGATCGAGTTATTTCCATT+TGG + chr7.1:81672892-81672911 None:intergenic 30.0%
!!! ATGGTGTTTTTTTAGTTGCT+AGG - chr7.1:81673310-81673329 MS.gene021917:CDS 30.0%
!!! CTTTGAGTTTTGGTTCAAAA+GGG + chr7.1:81672972-81672991 None:intergenic 30.0%
!!! TCTTTGAGTTTTGGTTCAAA+AGG + chr7.1:81672973-81672992 None:intergenic 30.0%
!!! TTGAAATTTTTGGAGTTGCA+GGG - chr7.1:81673433-81673452 MS.gene021917:CDS 30.0%
!!! TTTCGTTTCCTTTTTGAGTT+GGG + chr7.1:81672933-81672952 None:intergenic 30.0%
!!! TTTGAAATTTTTGGAGTTGC+AGG - chr7.1:81673432-81673451 MS.gene021917:CDS 30.0%
!!! TTTTCGACATATTTTGGCTA+AGG - chr7.1:81672341-81672360 MS.gene021917:CDS 30.0%
AGCAAAGAAACACCATCATT+TGG + chr7.1:81672553-81672572 None:intergenic 35.0%
ATAGATAGAGGTTTAGCCAT+TGG - chr7.1:81673525-81673544 MS.gene021917:CDS 35.0%
ATGATGAGTGCTTATTCCAA+TGG + chr7.1:81672731-81672750 None:intergenic 35.0%
GAAATCATTCAAGACCCAAA+TGG - chr7.1:81672874-81672893 MS.gene021917:CDS 35.0%
TCTAACTCTTGCAATAGAGT+TGG + chr7.1:81672838-81672857 None:intergenic 35.0%
TGAGAGAAATTGAGGTTGTT+TGG + chr7.1:81672318-81672337 None:intergenic 35.0%
TTTAGCTGGTAACATCGTTT+GGG - chr7.1:81672492-81672511 MS.gene021917:CDS 35.0%
! CATTCTTGTTTGACAAGAGA+AGG - chr7.1:81673408-81673427 MS.gene021917:CDS 35.0%
! CCAAAAAGTGGTTTTTCCAT+TGG - chr7.1:81672712-81672731 MS.gene021917:CDS 35.0%
! TGAAAAGGGTTTTCTTGAAG+AGG - chr7.1:81673362-81673381 MS.gene021917:CDS 35.0%
!! AAGAAGTACCCAACTCAAAA+AGG - chr7.1:81672922-81672941 MS.gene021917:CDS 35.0%
!! CCAATGGAAAAACCACTTTT+TGG + chr7.1:81672715-81672734 None:intergenic 35.0%
!! GAAATAGTGTCGATAGATAG+AGG - chr7.1:81673513-81673532 MS.gene021917:CDS 35.0%
!! TAAAGGAAGAAAGTGTTGGA+GGG + chr7.1:81672476-81672495 None:intergenic 35.0%
!! TTGTGTTTGCTGTAGATTGT+AGG - chr7.1:81673193-81673212 MS.gene021917:CDS 35.0%
!!! CTTTCGTTTCCTTTTTGAGT+TGG + chr7.1:81672934-81672953 None:intergenic 35.0%
!!! TTTTTGAGTTGGGTACTTCT+TGG + chr7.1:81672923-81672942 None:intergenic 35.0%
ACTCATCATGCTGTTGTTGA+TGG - chr7.1:81672742-81672761 MS.gene021917:CDS 40.0%
CAAACGATGTTACCAGCTAA+AGG + chr7.1:81672493-81672512 None:intergenic 40.0%
CAACACTTTCTTCCTTTAGC+TGG - chr7.1:81672478-81672497 MS.gene021917:CDS 40.0%
CTTTAGCTGGTAACATCGTT+TGG - chr7.1:81672491-81672510 MS.gene021917:CDS 40.0%
GAGGGTCTGATTGTGAATTT+GGG + chr7.1:81672402-81672421 None:intergenic 40.0%
GTATGACATCGATCTTGGTT+GGG - chr7.1:81673473-81673492 MS.gene021917:CDS 40.0%
GTCTGATTGTGAATTTGGGA+GGG + chr7.1:81672398-81672417 None:intergenic 40.0%
GTTGCAGGGTCTAATAGATT+TGG - chr7.1:81673447-81673466 MS.gene021917:CDS 40.0%
TAACCTCAAACGCGAAGATT+TGG - chr7.1:81673011-81673030 MS.gene021917:CDS 40.0%
TATCCAAATCTTCGCGTTTG+AGG + chr7.1:81673017-81673036 None:intergenic 40.0%
TATCGACACTATTTCCACCT+TGG + chr7.1:81673508-81673527 None:intergenic 40.0%
TATGACATCGATCTTGGTTG+GGG - chr7.1:81673474-81673493 MS.gene021917:CDS 40.0%
TGTATGACATCGATCTTGGT+TGG - chr7.1:81673472-81673491 MS.gene021917:CDS 40.0%
TTGCTGTAGATTGTAGGACA+AGG - chr7.1:81673199-81673218 MS.gene021917:CDS 40.0%
! CAGCTAAAGGAAGAAAGTGT+TGG + chr7.1:81672480-81672499 None:intergenic 40.0%
! CGAGACAAAGAAGCTTCTTT+TGG + chr7.1:81672622-81672641 None:intergenic 40.0%
! TAGAGGTTTAGCCATTGGTT+TGG - chr7.1:81673530-81673549 MS.gene021917:CDS 40.0%
! TTTGCTATCTGCCAAACCAA+TGG + chr7.1:81673544-81673563 None:intergenic 40.0%
!! AGCAAAGGGTGTTATCAACA+TGG - chr7.1:81673043-81673062 MS.gene021917:CDS 40.0%
!! CAATAGAGTTGGTGTCTCTT+TGG + chr7.1:81672827-81672846 None:intergenic 40.0%
!! CGAACACAGTCTTTGAGTTT+TGG + chr7.1:81672982-81673001 None:intergenic 40.0%
!! CTAAAGGAAGAAAGTGTTGG+AGG + chr7.1:81672477-81672496 None:intergenic 40.0%
!! GCAAAGGGTGTTATCAACAT+GGG - chr7.1:81673044-81673063 MS.gene021917:CDS 40.0%
CTAACGAATAAGCACAAGCG+AGG + chr7.1:81673119-81673138 None:intergenic 45.0%
GACACTATTTCCACCTTGGT+TGG + chr7.1:81673504-81673523 None:intergenic 45.0%
GATAGCAAAGATGGAAGTGG+TGG - chr7.1:81673555-81673574 MS.gene021917:CDS 45.0%
GCAGATAGCAAAGATGGAAG+TGG - chr7.1:81673552-81673571 MS.gene021917:CDS 45.0%
GGAGGGTCTGATTGTGAATT+TGG + chr7.1:81672403-81672422 None:intergenic 45.0%
GGAGTGTATGACATCGATCT+TGG - chr7.1:81673468-81673487 MS.gene021917:CDS 45.0%
GGTCTGATTGTGAATTTGGG+AGG + chr7.1:81672399-81672418 None:intergenic 45.0%
GGTTTGGCAGATAGCAAAGA+TGG - chr7.1:81673546-81673565 MS.gene021917:CDS 45.0%
! GAAGTGGTGGAGTTGAAGTT+GGG - chr7.1:81673568-81673587 MS.gene021917:CDS 45.0%
!! GAGGTTGTTTGGCTTGATGA+TGG + chr7.1:81672307-81672326 None:intergenic 45.0%
!! GTTGTTTGGCTTGATGATGG+AGG + chr7.1:81672304-81672323 None:intergenic 45.0%
TGGTTGGGGAAAACCAACCA+AGG - chr7.1:81673488-81673507 MS.gene021917:CDS 50.0%
TTGGGGAAAACCAACCAAGG+TGG - chr7.1:81673491-81673510 MS.gene021917:CDS 50.0%
! GGAAGTGGTGGAGTTGAAGT+TGG - chr7.1:81673567-81673586 MS.gene021917:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 81672253 81673659 81672253 ID=MS.gene021917
chr7.1 mRNA 81672253 81673659 81672253 ID=MS.gene021917.t1;Parent=MS.gene021917
chr7.1 exon 81672253 81673659 81672253 ID=MS.gene021917.t1.exon1;Parent=MS.gene021917.t1
chr7.1 CDS 81672253 81673659 81672253 ID=cds.MS.gene021917.t1;Parent=MS.gene021917.t1
Gene Sequence

>MS.gene021917

ATGGCTTACAACAACAACATTAAAATTCAAGAACACATCAAAGTTGTTCCTCCATCATCAAGCCAAACAACCTCAATTTCTCTCACTTTTTTCGACATATTTTGGCTAAGGTTCCATCCAATAGAATACATCTTCTTCTACACCCTCCCAAATTCACAATCAGACCCTCCATTCTTCTTTCAAACAATTGTTCCAAATCTTAAATCTTCACTTTCTTTGACCCTCCAACACTTTCTTCCTTTAGCTGGTAACATCGTTTGGGATTTTGAATCACAAAACCCAAAAATACAATACACACCAAATGATGGTGTTTCTTTGCTCATTGCAGAGTCAGATTTAGATTTCAATCATGTAATTGAAAACTCACCAAAAGAAGCTTCTTTGTCTCGTTCTTTTATACCATATTTGGAATCAACAAATTCTTTTGCTTCTATTATCTCACTCCAAATAACCCTTTTTCCAAAAAGTGGTTTTTCCATTGGAATAAGCACTCATCATGCTGTTGTTGATGGAAAATCTTCAATCATATTCATCAAAGCTTGGGCTTATCTATGCAAAAAATCAATTGAAACCAAAGAGACACCAACTCTATTGCAAGAGTTAGAACCTTTATTCAACAGGGAAATCATTCAAGACCCAAATGGAAATAACTCGATCAAGATATTATCCAAGAAGTACCCAACTCAAAAAGGAAACGAAAGAAGCTTAAAGAATTTCCCTTTTGAACCAAAACTCAAAGACTGTGTTCGCGCTACTTTTAACCTCAAACGCGAAGATTTGGATAATATAAAGCAAAGGGTGTTATCAACATGGGAAACATTCGATACAAGAGAATCAATGCCACAAAATCTATCATCGTTTGTCCTCGCTTGTGCTTATTCGTTAGTTTGTCTTGCGAAAGCAATCCATAAAGTTCAAAATTATAAAGAGAAGTTTGGTTTTGTGTTTGCTGTAGATTGTAGGACAAGGTTAAAACCACCAATAACAAATAACTATATTGGAAACTGTATTTGGGGGCATTTCATTGATGCACAACCGTTAGATTTTATAAAAGAAGATGGTGTTTTTTTAGTTGCTAGGAGTATTTATGAGAGAATAAAGATGATAAATGAAAAGGGTTTTCTTGAAGAGGCTATTGATGATGTGTATAATAAACATTCTTGTTTGACAAGAGAAGGATTTGAAATTTTTGGAGTTGCAGGGTCTAATAGATTTGGAGTGTATGACATCGATCTTGGTTGGGGAAAACCAACCAAGGTGGAAATAGTGTCGATAGATAGAGGTTTAGCCATTGGTTTGGCAGATAGCAAAGATGGAAGTGGTGGAGTTGAAGTTGGGCTTGTTCTTAATAAACATGTAATGAATTTATTTAGCACATTGTTTTATGAAGGATTATGCACTCAATGA
Protein sequence

>MS.gene021917.t1

MAYNNNIKIQEHIKVVPPSSSQTTSISLTFFDIFWLRFHPIEYIFFYTLPNSQSDPPFFFQTIVPNLKSSLSLTLQHFLPLAGNIVWDFESQNPKIQYTPNDGVSLLIAESDLDFNHVIENSPKEASLSRSFIPYLESTNSFASIISLQITLFPKSGFSIGISTHHAVVDGKSSIIFIKAWAYLCKKSIETKETPTLLQELEPLFNREIIQDPNGNNSIKILSKKYPTQKGNERSLKNFPFEPKLKDCVRATFNLKREDLDNIKQRVLSTWETFDTRESMPQNLSSFVLACAYSLVCLAKAIHKVQNYKEKFGFVFAVDCRTRLKPPITNNYIGNCIWGHFIDAQPLDFIKEDGVFLVARSIYERIKMINEKGFLEEAIDDVYNKHSCLTREGFEIFGVAGSNRFGVYDIDLGWGKPTKVEIVSIDRGLAIGLADSKDGSGGVEVGLVLNKHVMNLFSTLFYEGLCTQ