AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028996

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028996.t1 MTR_2g089765 85.954 477 62 3 1 476 16 488 0.0 843
MS.gene028996.t1 MTR_2g089670 70.981 479 119 6 1 476 22 483 0.0 664
MS.gene028996.t1 MTR_8g012750 67.078 486 136 11 1 474 3 476 0.0 617
MS.gene028996.t1 MTR_2g089665 59.375 448 65 7 1 445 2 335 1.65e-169 481
MS.gene028996.t1 MTR_7g015860 42.589 479 243 9 1 470 5 460 6.83e-123 367
MS.gene028996.t1 MTR_3g028210 36.495 485 271 10 1 473 8 467 7.30e-101 310
MS.gene028996.t1 MTR_7g014330 39.583 480 245 15 2 466 3 452 1.50e-93 291
MS.gene028996.t1 MTR_2g089650 35.378 489 269 14 1 473 9 466 1.56e-89 281
MS.gene028996.t1 MTR_2g089755 35.546 467 259 13 24 473 37 478 1.70e-86 273
MS.gene028996.t1 MTR_7g014250 37.029 478 260 14 2 466 3 452 2.34e-83 265
MS.gene028996.t1 MTR_7g014230 37.395 476 261 14 2 466 5 454 7.48e-83 263
MS.gene028996.t1 MTR_3g087640 34.959 492 270 16 2 471 10 473 1.68e-82 263
MS.gene028996.t1 MTR_6g015850 36.175 481 271 10 1 473 8 460 4.92e-82 261
MS.gene028996.t1 MTR_2g089735 34.205 459 265 10 28 473 30 464 8.43e-82 261
MS.gene028996.t1 MTR_6g015830 37.716 464 253 12 18 473 28 463 1.01e-79 255
MS.gene028996.t1 MTR_6g015815 34.845 485 273 12 2 473 9 463 3.24e-77 249
MS.gene028996.t1 MTR_7g014200 33.198 491 280 14 1 472 9 470 3.54e-74 241
MS.gene028996.t1 MTR_6g015320 32.225 481 279 10 6 473 11 457 7.98e-73 237
MS.gene028996.t1 MTR_7g014160 32.645 484 293 12 1 470 9 473 8.53e-71 233
MS.gene028996.t1 MTR_6g015315 32.237 456 269 8 28 473 30 455 3.65e-69 228
MS.gene028996.t1 MTR_7g014610 32.129 498 287 15 1 475 8 477 7.92e-68 225
MS.gene028996.t1 MTR_7g013850 31.435 474 274 13 25 470 30 480 4.51e-64 215
MS.gene028996.t1 MTR_7g014620 32.258 465 258 12 20 470 11 432 2.25e-58 199
MS.gene028996.t1 MTR_7g014360 32.759 406 221 12 69 466 21 382 7.81e-51 177
MS.gene028996.t1 MTR_3g435300 35.507 276 152 9 2 267 4 263 1.54e-42 152
MS.gene028996.t1 MTR_2g089745 81.928 83 15 0 394 476 1 83 6.67e-37 130
MS.gene028996.t1 MTR_7g014310 30.460 348 168 11 108 452 29 305 2.78e-32 125
MS.gene028996.t1 MTR_6g015310 27.062 388 197 10 71 448 22 333 5.54e-32 125
MS.gene028996.t1 MTR_7g014630 37.387 222 119 7 1 217 9 215 1.72e-31 124
MS.gene028996.t1 MTR_7g014670 32.828 198 123 2 274 470 71 259 1.39e-28 114
MS.gene028996.t1 MTR_7g014180 38.764 178 95 5 1 174 7 174 3.92e-26 105
MS.gene028996.t1 MTR_8g041770 26.144 459 272 15 24 473 30 430 1.66e-21 97.1
MS.gene028996.t1 MTR_4g022720 23.570 437 288 11 24 455 24 419 7.39e-21 95.1
MS.gene028996.t1 MTR_4g022670 25.362 414 261 14 18 422 18 392 2.10e-17 84.7
MS.gene028996.t1 MTR_4g094842 23.156 488 309 18 1 466 4 447 2.30e-17 84.7
MS.gene028996.t1 MTR_4g022825 25.424 413 249 15 24 422 24 391 2.38e-17 84.7
MS.gene028996.t1 MTR_4g022800 23.219 379 255 11 50 422 45 393 6.91e-17 83.2
MS.gene028996.t1 MTR_3g026310 23.288 438 299 11 22 452 22 429 1.39e-16 82.4
MS.gene028996.t1 MTR_6g045553 25.536 466 278 17 24 459 35 461 1.48e-16 82.4
MS.gene028996.t1 MTR_4g022290 23.529 459 271 18 18 452 24 426 1.90e-16 82.0
MS.gene028996.t1 MTR_4g094828 22.986 422 258 14 20 422 25 398 2.06e-16 81.6
MS.gene028996.t1 MTR_3g070170 22.323 439 272 13 54 462 60 459 3.00e-16 81.3
MS.gene028996.t1 MTR_7g085930 23.062 516 309 19 1 478 5 470 3.78e-16 81.3
MS.gene028996.t1 MTR_7g014210 39.252 107 63 2 336 440 32 138 1.06e-15 75.1
MS.gene028996.t1 MTR_7g014205 36.441 118 55 3 326 438 18 120 3.59e-15 72.4
MS.gene028996.t1 MTR_7g014340 57.353 68 28 1 2 68 3 70 5.97e-15 70.9
MS.gene028996.t1 MTR_3g435290 34.711 121 76 2 351 471 1 118 5.98e-15 71.6
MS.gene028996.t1 MTR_2g105330 23.831 449 272 19 40 473 39 432 1.37e-14 75.9
MS.gene028996.t1 MTR_3g098980 22.494 409 267 10 59 462 65 428 1.47e-14 75.9
MS.gene028996.t1 MTR_2g064495 23.756 442 275 19 40 468 39 431 1.49e-14 75.9
MS.gene028996.t1 MTR_8g096530 24.766 428 254 17 59 474 58 429 2.51e-14 75.5
MS.gene028996.t1 MTR_7g014220 57.143 63 27 0 16 78 10 72 5.44e-14 67.8
MS.gene028996.t1 MTR_5g076700 24.599 374 226 13 57 421 62 388 8.58e-14 73.6
MS.gene028996.t1 MTR_7g114490 22.642 371 232 10 59 421 64 387 1.21e-13 73.6
MS.gene028996.t1 MTR_3g101900 23.884 448 286 17 24 459 30 434 2.17e-13 72.4
MS.gene028996.t1 MTR_7g114560 23.155 393 245 11 37 421 44 387 7.63e-13 70.9
MS.gene028996.t1 MTR_7g085990 24.319 514 298 22 1 475 1 462 9.55e-13 70.5
MS.gene028996.t1 MTR_3g101930 23.773 387 245 15 46 421 56 403 5.22e-12 68.2
MS.gene028996.t1 MTR_3g049150 25.796 314 177 13 133 422 118 399 2.36e-11 66.2
MS.gene028996.t1 MTR_3g026950 25.325 308 170 10 143 422 128 403 7.22e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028996.t1 AT1G03940 40.373 483 257 14 2 475 9 469 7.26e-106 323
MS.gene028996.t1 AT1G03495 40.449 356 183 11 3 352 10 342 6.43e-72 231
MS.gene028996.t1 AT5G61160 32.582 488 275 14 1 472 3 452 7.96e-66 219
MS.gene028996.t1 AT3G29670 31.458 480 286 13 1 470 3 449 8.01e-66 219
MS.gene028996.t1 AT3G29635 32.025 484 289 12 1 473 3 457 7.96e-64 214
MS.gene028996.t1 AT3G29680 31.667 480 285 12 1 471 3 448 2.50e-60 204
MS.gene028996.t1 AT5G39090 32.000 475 282 14 1 468 5 445 4.43e-59 201
MS.gene028996.t1 AT3G29590 32.099 486 271 18 1 471 8 449 1.19e-58 200
MS.gene028996.t1 AT5G39050 29.796 490 296 13 1 472 10 469 1.20e-54 190
MS.gene028996.t1 AT5G39080 29.424 486 284 15 1 463 5 454 2.01e-53 186
MS.gene028996.t1 AT2G19070 23.937 447 283 13 42 468 40 449 1.85e-19 91.3
MS.gene028996.t1 AT3G29690 32.716 162 97 4 315 472 27 180 2.53e-16 77.4
MS.gene028996.t1 AT3G50270 24.201 438 266 16 3 422 8 397 8.06e-16 80.1
MS.gene028996.t1 AT3G48720 21.198 434 284 10 37 462 41 424 6.61e-15 77.0
MS.gene028996.t1 AT3G50300 25.114 438 263 17 1 422 4 392 7.62e-14 73.9
MS.gene028996.t1 AT5G41040 21.173 392 261 10 54 439 63 412 1.17e-13 73.2
MS.gene028996.t1 AT5G41040 21.320 394 258 11 54 439 79 428 1.88e-13 72.8
MS.gene028996.t1 AT3G29720 30.928 194 112 7 99 288 26 201 5.93e-13 68.6
MS.gene028996.t1 AT1G31490 22.172 442 260 15 41 455 43 427 2.93e-11 65.9

Find 102 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATTTCATGAAATTT+TGG 0.059044 2.3:+11310032 MS.gene028996:CDS
GTCTCATAAACAGCCAATTT+TGG 0.236198 2.3:-11310733 None:intergenic
GCTGTTTATGAGACTGATTT+TGG 0.237069 2.3:+11310742 MS.gene028996:CDS
AATCGTTGATGCCTAATTAT+AGG 0.244855 2.3:+11310665 MS.gene028996:CDS
ATACGAGGTGGAGGTAAATT+TGG 0.246555 2.3:-11309893 None:intergenic
GGAGGAGTGTTATGGGAATT+TGG 0.249016 2.3:-11309755 None:intergenic
TTAGAGAATTTCCTATAATT+AGG 0.272716 2.3:-11310676 None:intergenic
TAACCCATTTCTTCAACTTC+TGG 0.280416 2.3:-11310297 None:intergenic
GTTGGTGATGGAACTAAATT+TGG 0.291404 2.3:-11309548 None:intergenic
GGTTGCTGGTTCACCAAAAT+TGG 0.296365 2.3:+11310720 MS.gene028996:CDS
TTTAAGAATGATGCTTTGTT+AGG 0.320839 2.3:+11310637 MS.gene028996:CDS
CATTCGTGTAATCCCTATAT+TGG 0.328930 2.3:+11309928 MS.gene028996:CDS
TTGTAACAAGTTCCTTGATT+TGG 0.331236 2.3:+11310368 MS.gene028996:CDS
GTGACTTGAATAGCCAATAT+AGG 0.343977 2.3:-11309941 None:intergenic
TTATAGGAAATTCTCTAAAC+CGG 0.347519 2.3:+11310681 MS.gene028996:CDS
ACGTCTCTTGTAGTGGTTGC+TGG 0.360866 2.3:+11310706 MS.gene028996:CDS
AGAAATGGAATCTGCGGGTT+TGG 0.362780 2.3:+11310216 MS.gene028996:CDS
TGAACTGCATCAGATTTCTT+AGG 0.374068 2.3:-11310775 None:intergenic
AAGTCCAGAAGTTGAAGAAA+TGG 0.376086 2.3:+11310293 MS.gene028996:CDS
ATTTCCCGTCTGCAGCAATA+TGG 0.378457 2.3:-11310006 None:intergenic
TAGAAGAAGATACGATGAAT+TGG 0.382944 2.3:-11309617 None:intergenic
TATACAAGTTTAAGACCCTT+TGG 0.383445 2.3:-11310163 None:intergenic
AAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.3:-11309705 None:intergenic
TCTCTTTCTGATTGCAGAGA+TGG 0.388820 2.3:+11310820 MS.gene028996:CDS
ATTCACAAGATGCTCAAAAC+TGG 0.405633 2.3:+11309858 MS.gene028996:CDS
GTATGTAAGGAGGAGTGTTA+TGG 0.407860 2.3:-11309763 None:intergenic
TGACTTGAATAGCCAATATA+GGG 0.419390 2.3:-11309940 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.3:-11309738 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.3:-11309684 None:intergenic
TATGTAAGGAGGAGTGTTAT+GGG 0.427366 2.3:-11309762 None:intergenic
GATGATGAGGTTGGAGGTGA+AGG 0.429029 2.3:-11309729 None:intergenic
GAATGGGAAGTGTTGTTTGT+AGG 0.432621 2.3:-11309667 None:intergenic
AGATTCTGTATCAAAAGAAA+TGG 0.440390 2.3:+11310201 MS.gene028996:CDS
TGGTATGTCGAAGAAAGTTA+AGG 0.445120 2.3:-11309579 None:intergenic
CAGATAGAGAAACCGGAGTT+CGG 0.445819 2.3:-11309971 None:intergenic
CTTTCTGATTGCAGAGATGG+TGG 0.446881 2.3:+11310823 MS.gene028996:CDS
GTAAAGAGAGATGAGTTAGT+TGG 0.455750 2.3:+11310562 MS.gene028996:CDS
GGTGGAGGTGGAATTGAGAT+TGG 0.460315 2.3:+11310841 MS.gene028996:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.3:-11309683 None:intergenic
AGGTGGAATTGAGATTGGTT+TGG 0.473934 2.3:+11310846 MS.gene028996:CDS
GTCACTGTTCTTCCGAACTC+CGG 0.487247 2.3:+11309959 MS.gene028996:CDS
GGTATGTCGAAGAAAGTTAA+GGG 0.489263 2.3:-11309578 None:intergenic
AGAAGAAGATACGATGAATT+GGG 0.491688 2.3:-11309616 None:intergenic
AGTCCAGAAGTTGAAGAAAT+GGG 0.492194 2.3:+11310294 MS.gene028996:CDS
GGGAATTTGGAGGGATGATG+AGG 0.494796 2.3:-11309742 None:intergenic
TCATCAAGGTAACGTATGTA+AGG 0.500527 2.3:-11309776 None:intergenic
TGAAGGGAAAGAAGTGTTGG+AGG 0.501627 2.3:-11309712 None:intergenic
ACTGAGGCAGATAGAGAAAC+CGG 0.503828 2.3:-11309978 None:intergenic
GGGATTGTTGTGGCTTCAAA+TGG 0.510486 2.3:+11310592 MS.gene028996:CDS
TGTAGCATGCGAATGAACTA+AGG 0.513925 2.3:+11310931 MS.gene028996:CDS
GTTTGTAGGAAGTGATGAGT+TGG 0.516421 2.3:-11309653 None:intergenic
AAGGGGAGAATGGTTGGTGA+TGG 0.521926 2.3:-11309560 None:intergenic
AGGTGAAGGGAAAGAAGTGT+TGG 0.523394 2.3:-11309715 None:intergenic
GGTGATGGAACTAAATTTGG+TGG 0.531792 2.3:-11309545 None:intergenic
ACTCTATTTCTTTCATGTGA+AGG 0.532029 2.3:-11310133 None:intergenic
AGATTGGTTTGGCTCTTGAG+AGG 0.535803 2.3:+11310857 MS.gene028996:CDS
GATCATACAAAACCAAATCA+AGG 0.536579 2.3:-11310380 None:intergenic
TTGTATGATCAAATCGGAGG+AGG 0.538608 2.3:+11310393 MS.gene028996:CDS
TGAGGATTCAGCGACGGTGA+AGG 0.543996 2.3:-11309810 None:intergenic
TGGAGGGATGATGAGGTTGG+AGG 0.545689 2.3:-11309735 None:intergenic
GGTGATAGCAAAAGTGATCA+AGG 0.548302 2.3:+11310415 MS.gene028996:CDS
AAAGTTAAGGGGAGAATGGT+TGG 0.550742 2.3:-11309566 None:intergenic
TCAAAAGAAATGGAATCTGC+GGG 0.555070 2.3:+11310211 MS.gene028996:CDS
GGAGGTAAATTTGGAACAAG+AGG 0.560790 2.3:-11309884 None:intergenic
TCGAGATTCTTATGTTAGCA+AGG 0.560871 2.3:+11310240 MS.gene028996:CDS
GAAGAAAGTTAAGGGGAGAA+TGG 0.561998 2.3:-11309570 None:intergenic
GATGAGTTGGATGAGGAAAG+TGG 0.563879 2.3:-11309640 None:intergenic
TACAACCATATTGCTGCAGA+CGG 0.567282 2.3:+11310001 MS.gene028996:CDS
TCTTGTTCTATACGAGGTGG+AGG 0.569390 2.3:-11309902 None:intergenic
ATCAAAAGAAATGGAATCTG+CGG 0.571655 2.3:+11310210 MS.gene028996:CDS
AAATAGAGTTAAAGATCCAA+AGG 0.571917 2.3:+11310147 MS.gene028996:CDS
ATGATGAGGTTGGAGGTGAA+GGG 0.572297 2.3:-11309728 None:intergenic
ACCGGGTACGTCTCTTGTAG+TGG 0.574375 2.3:+11310699 MS.gene028996:CDS
GATTGCAGAGATGGTGGAGG+TGG 0.575491 2.3:+11310829 MS.gene028996:CDS
AATAGAGTTAAAGATCCAAA+GGG 0.576796 2.3:+11310148 MS.gene028996:CDS
GCAGATTGTCGTGATAGCGT+TGG 0.581739 2.3:+11310484 MS.gene028996:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.585446 2.3:-11309647 None:intergenic
GAAGGGAAAGAAGTGTTGGA+GGG 0.591041 2.3:-11309711 None:intergenic
TAACTTTCTTCGACATACCA+TGG 0.593348 2.3:+11309582 MS.gene028996:CDS
GAGTGTTATGGGAATTTGGA+GGG 0.596912 2.3:-11309751 None:intergenic
GGAGTGTTATGGGAATTTGG+AGG 0.601515 2.3:-11309752 None:intergenic
AGCAAAAGTGATCAAGGTGA+AGG 0.601720 2.3:+11310421 MS.gene028996:CDS
TCTGATTGCAGAGATGGTGG+AGG 0.603040 2.3:+11310826 MS.gene028996:CDS
ACAACCATATTGCTGCAGAC+GGG 0.604720 2.3:+11310002 MS.gene028996:CDS
TATAGGAAATTCTCTAAACC+GGG 0.606160 2.3:+11310682 MS.gene028996:CDS
TGTATGATCAAATCGGAGGA+GGG 0.608399 2.3:+11310394 MS.gene028996:CDS
ATCAGAAAGAGAAATCGAAA+CGG 0.609802 2.3:-11310809 None:intergenic
GTCTGCTGAGGATTCAGCGA+CGG 0.615979 2.3:-11309816 None:intergenic
TCATGTGAAGGAAGATCAAG+AGG 0.624288 2.3:-11310121 None:intergenic
TTATCTTGTTCTATACGAGG+TGG 0.627129 2.3:-11309905 None:intergenic
GATGGAACTAAATTTGGTGG+TGG 0.629084 2.3:-11309542 None:intergenic
CAGCAATATGGTTGTAACTG+AGG 0.631657 2.3:-11309994 None:intergenic
TTGTATTGCATCTAATGCTG+TGG 0.648941 2.3:+11310537 MS.gene028996:CDS
TCAAGGTAACGTATGTAAGG+AGG 0.651289 2.3:-11309773 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2.3:-11309790 None:intergenic
ACCACTACAAGAGACGTACC+CGG 0.658474 2.3:-11310700 None:intergenic
GAGAATGTTGAAGTCTGCTG+AGG 0.661878 2.3:-11309828 None:intergenic
GAGGTAAATTTGGAACAAGA+GGG 0.662819 2.3:-11309883 None:intergenic
ATGTTATCTTGTTCTATACG+AGG 0.669004 2.3:-11309908 None:intergenic
GTATGTCGAAGAAAGTTAAG+GGG 0.670105 2.3:-11309577 None:intergenic
TGTGAAGGAAGATCAAGAGG+CGG 0.686663 2.3:-11310118 None:intergenic
ATTGGGTCACAATAAAACCA+TGG 0.688914 2.3:-11309599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAGAATTTCCTATAATT+AGG - chr2.3:11310679-11310698 None:intergenic 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG - chr2.3:11310520-11310539 None:intergenic 20.0%
!!! TCATCATTTCATGAAATTTT+GGG + chr2.3:11310033-11310052 MS.gene028996:CDS 20.0%
!!! TCATTACCAAAAACTTATTT+TGG + chr2.3:11310511-11310530 MS.gene028996:CDS 20.0%
!!! TTCATCATTTCATGAAATTT+TGG + chr2.3:11310032-11310051 MS.gene028996:CDS 20.0%
!!! TTTGTTATTGTTTTTTGCTA+TGG - chr2.3:11310074-11310093 None:intergenic 20.0%
! AAATAGAGTTAAAGATCCAA+AGG + chr2.3:11310147-11310166 MS.gene028996:CDS 25.0%
! AATAGAGTTAAAGATCCAAA+GGG + chr2.3:11310148-11310167 MS.gene028996:CDS 25.0%
! AGATTCTGTATCAAAAGAAA+TGG + chr2.3:11310201-11310220 MS.gene028996:CDS 25.0%
! ATGAGTTAGTTGGAAAAAAT+GGG + chr2.3:11310572-11310591 MS.gene028996:CDS 25.0%
! TTATAGGAAATTCTCTAAAC+CGG + chr2.3:11310681-11310700 MS.gene028996:CDS 25.0%
!! TTTAAGAATGATGCTTTGTT+AGG + chr2.3:11310637-11310656 MS.gene028996:CDS 25.0%
!!! TTGGTTTTGTATGATCAAAT+CGG + chr2.3:11310387-11310406 MS.gene028996:CDS 25.0%
AATCGTTGATGCCTAATTAT+AGG + chr2.3:11310665-11310684 MS.gene028996:CDS 30.0%
AGAAGAAGATACGATGAATT+GGG - chr2.3:11309619-11309638 None:intergenic 30.0%
ATCAAAAGAAATGGAATCTG+CGG + chr2.3:11310210-11310229 MS.gene028996:CDS 30.0%
ATCAGAAAGAGAAATCGAAA+CGG - chr2.3:11310812-11310831 None:intergenic 30.0%
ATGTTATCTTGTTCTATACG+AGG - chr2.3:11309911-11309930 None:intergenic 30.0%
GATCATACAAAACCAAATCA+AGG - chr2.3:11310383-11310402 None:intergenic 30.0%
GATGAGTTAGTTGGAAAAAA+TGG + chr2.3:11310571-11310590 MS.gene028996:CDS 30.0%
TAGAAGAAGATACGATGAAT+TGG - chr2.3:11309620-11309639 None:intergenic 30.0%
TATAGGAAATTCTCTAAACC+GGG + chr2.3:11310682-11310701 MS.gene028996:CDS 30.0%
TGACTTGAATAGCCAATATA+GGG - chr2.3:11309943-11309962 None:intergenic 30.0%
TTGTAACAAGTTCCTTGATT+TGG + chr2.3:11310368-11310387 MS.gene028996:CDS 30.0%
! ACTCTATTTCTTTCATGTGA+AGG - chr2.3:11310136-11310155 None:intergenic 30.0%
! TATACAAGTTTAAGACCCTT+TGG - chr2.3:11310166-11310185 None:intergenic 30.0%
!! CTGTTTATGAGACTGATTTT+GGG + chr2.3:11310743-11310762 MS.gene028996:CDS 30.0%
!! TTTTGCTATGGCTTTTGAAA+GGG - chr2.3:11310062-11310081 None:intergenic 30.0%
!! TTTTTGCTATGGCTTTTGAA+AGG - chr2.3:11310063-11310082 None:intergenic 30.0%
AAGTCCAGAAGTTGAAGAAA+TGG + chr2.3:11310293-11310312 MS.gene028996:CDS 35.0%
AGTCCAGAAGTTGAAGAAAT+GGG + chr2.3:11310294-11310313 MS.gene028996:CDS 35.0%
ATTCACAAGATGCTCAAAAC+TGG + chr2.3:11309858-11309877 MS.gene028996:CDS 35.0%
ATTGGGTCACAATAAAACCA+TGG - chr2.3:11309602-11309621 None:intergenic 35.0%
CATTCGTGTAATCCCTATAT+TGG + chr2.3:11309928-11309947 MS.gene028996:CDS 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG - chr2.3:11309686-11309705 None:intergenic 35.0%
GGTATGTCGAAGAAAGTTAA+GGG - chr2.3:11309581-11309600 None:intergenic 35.0%
GTAAAGAGAGATGAGTTAGT+TGG + chr2.3:11310562-11310581 MS.gene028996:CDS 35.0%
GTATGTCGAAGAAAGTTAAG+GGG - chr2.3:11309580-11309599 None:intergenic 35.0%
GTGACTTGAATAGCCAATAT+AGG - chr2.3:11309944-11309963 None:intergenic 35.0%
TAACCCATTTCTTCAACTTC+TGG - chr2.3:11310300-11310319 None:intergenic 35.0%
TAACTTTCTTCGACATACCA+TGG + chr2.3:11309582-11309601 MS.gene028996:CDS 35.0%
TCAAAAGAAATGGAATCTGC+GGG + chr2.3:11310211-11310230 MS.gene028996:CDS 35.0%
TCATCAAGGTAACGTATGTA+AGG - chr2.3:11309779-11309798 None:intergenic 35.0%
TCGAGATTCTTATGTTAGCA+AGG + chr2.3:11310240-11310259 MS.gene028996:CDS 35.0%
TGAACTGCATCAGATTTCTT+AGG - chr2.3:11310778-11310797 None:intergenic 35.0%
TGGAAAAAATGGGATTGTTG+TGG + chr2.3:11310582-11310601 MS.gene028996:CDS 35.0%
TGGTATGTCGAAGAAAGTTA+AGG - chr2.3:11309582-11309601 None:intergenic 35.0%
TTATCTTGTTCTATACGAGG+TGG - chr2.3:11309908-11309927 None:intergenic 35.0%
TTGTATTGCATCTAATGCTG+TGG + chr2.3:11310537-11310556 MS.gene028996:CDS 35.0%
! GAGGTAAATTTGGAACAAGA+GGG - chr2.3:11309886-11309905 None:intergenic 35.0%
! GTCTCATAAACAGCCAATTT+TGG - chr2.3:11310736-11310755 None:intergenic 35.0%
! GTTTTGTATGATCAAATCGG+AGG + chr2.3:11310390-11310409 MS.gene028996:CDS 35.0%
!! GCTGTTTATGAGACTGATTT+TGG + chr2.3:11310742-11310761 MS.gene028996:CDS 35.0%
!! GTTGGTGATGGAACTAAATT+TGG - chr2.3:11309551-11309570 None:intergenic 35.0%
!! TATGTAAGGAGGAGTGTTAT+GGG - chr2.3:11309765-11309784 None:intergenic 35.0%
!! TTATGAGACTGATTTTGGGT+GGG + chr2.3:11310747-11310766 MS.gene028996:CDS 35.0%
!! TTTATGAGACTGATTTTGGG+TGG + chr2.3:11310746-11310765 MS.gene028996:CDS 35.0%
AAAGTTAAGGGGAGAATGGT+TGG - chr2.3:11309569-11309588 None:intergenic 40.0%
AGCAAAAGTGATCAAGGTGA+AGG + chr2.3:11310421-11310440 MS.gene028996:CDS 40.0%
AGGAGATAGAGTCTTCATCA+AGG - chr2.3:11309793-11309812 None:intergenic 40.0%
ATACGAGGTGGAGGTAAATT+TGG - chr2.3:11309896-11309915 None:intergenic 40.0%
CAGCAATATGGTTGTAACTG+AGG - chr2.3:11309997-11310016 None:intergenic 40.0%
GAAGAAAGTTAAGGGGAGAA+TGG - chr2.3:11309573-11309592 None:intergenic 40.0%
GAGTGTTATGGGAATTTGGA+GGG - chr2.3:11309754-11309773 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG - chr2.3:11309687-11309706 None:intergenic 40.0%
GGTGATAGCAAAAGTGATCA+AGG + chr2.3:11310415-11310434 MS.gene028996:CDS 40.0%
GTTTGTAGGAAGTGATGAGT+TGG - chr2.3:11309656-11309675 None:intergenic 40.0%
TACAACCATATTGCTGCAGA+CGG + chr2.3:11310001-11310020 MS.gene028996:CDS 40.0%
TCAAGGTAACGTATGTAAGG+AGG - chr2.3:11309776-11309795 None:intergenic 40.0%
TCATGTGAAGGAAGATCAAG+AGG - chr2.3:11310124-11310143 None:intergenic 40.0%
TCTCTTTCTGATTGCAGAGA+TGG + chr2.3:11310820-11310839 MS.gene028996:CDS 40.0%
TGTATGATCAAATCGGAGGA+GGG + chr2.3:11310394-11310413 MS.gene028996:CDS 40.0%
TTGTATGATCAAATCGGAGG+AGG + chr2.3:11310393-11310412 MS.gene028996:CDS 40.0%
! AGGTGGAATTGAGATTGGTT+TGG + chr2.3:11310846-11310865 MS.gene028996:CDS 40.0%
! GATGGAACTAAATTTGGTGG+TGG - chr2.3:11309545-11309564 None:intergenic 40.0%
! GGAGGTAAATTTGGAACAAG+AGG - chr2.3:11309887-11309906 None:intergenic 40.0%
!! AAAGAAGTGTTGGAGGGTTA+AGG - chr2.3:11309708-11309727 None:intergenic 40.0%
!! GAATGGGAAGTGTTGTTTGT+AGG - chr2.3:11309670-11309689 None:intergenic 40.0%
!! GGTGATGGAACTAAATTTGG+TGG - chr2.3:11309548-11309567 None:intergenic 40.0%
!! GTATGTAAGGAGGAGTGTTA+TGG - chr2.3:11309766-11309785 None:intergenic 40.0%
!! TATGAGACTGATTTTGGGTG+GGG + chr2.3:11310748-11310767 MS.gene028996:CDS 40.0%
ACAACCATATTGCTGCAGAC+GGG + chr2.3:11310002-11310021 MS.gene028996:CDS 45.0%
ACTGAGGCAGATAGAGAAAC+CGG - chr2.3:11309981-11310000 None:intergenic 45.0%
AGAAATGGAATCTGCGGGTT+TGG + chr2.3:11310216-11310235 MS.gene028996:CDS 45.0%
ATGATGAGGTTGGAGGTGAA+GGG - chr2.3:11309731-11309750 None:intergenic 45.0%
ATTTCCCGTCTGCAGCAATA+TGG - chr2.3:11310009-11310028 None:intergenic 45.0%
ATTTGGAGGGATGATGAGGT+TGG - chr2.3:11309741-11309760 None:intergenic 45.0%
CAGATAGAGAAACCGGAGTT+CGG - chr2.3:11309974-11309993 None:intergenic 45.0%
CTTTCTGATTGCAGAGATGG+TGG + chr2.3:11310823-11310842 MS.gene028996:CDS 45.0%
GAGAATGTTGAAGTCTGCTG+AGG - chr2.3:11309831-11309850 None:intergenic 45.0%
GGGATTGTTGTGGCTTCAAA+TGG + chr2.3:11310592-11310611 MS.gene028996:CDS 45.0%
TCTTGTTCTATACGAGGTGG+AGG - chr2.3:11309905-11309924 None:intergenic 45.0%
TGTGAAGGAAGATCAAGAGG+CGG - chr2.3:11310121-11310140 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG - chr2.3:11309650-11309669 None:intergenic 45.0%
! AGGTGAAGGGAAAGAAGTGT+TGG - chr2.3:11309718-11309737 None:intergenic 45.0%
! GATGAGTTGGATGAGGAAAG+TGG - chr2.3:11309643-11309662 None:intergenic 45.0%
! GGAGTGTTATGGGAATTTGG+AGG - chr2.3:11309755-11309774 None:intergenic 45.0%
!! AGATTGGTTTGGCTCTTGAG+AGG + chr2.3:11310857-11310876 MS.gene028996:CDS 45.0%
!! ATGAGACTGATTTTGGGTGG+GGG + chr2.3:11310749-11310768 MS.gene028996:CDS 45.0%
!! GAAGGGAAAGAAGTGTTGGA+GGG - chr2.3:11309714-11309733 None:intergenic 45.0%
!! GGAGGAGTGTTATGGGAATT+TGG - chr2.3:11309758-11309777 None:intergenic 45.0%
!! GGTTGCTGGTTCACCAAAAT+TGG + chr2.3:11310720-11310739 MS.gene028996:CDS 45.0%
!! TGAAGGGAAAGAAGTGTTGG+AGG - chr2.3:11309715-11309734 None:intergenic 45.0%
!! TGCTATGGCTTTTGAAAGGG+AGG - chr2.3:11310059-11310078 None:intergenic 45.0%
ACCACTACAAGAGACGTACC+CGG - chr2.3:11310703-11310722 None:intergenic 50.0%
ACGTCTCTTGTAGTGGTTGC+TGG + chr2.3:11310706-11310725 MS.gene028996:CDS 50.0%
GATGATGAGGTTGGAGGTGA+AGG - chr2.3:11309732-11309751 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG - chr2.3:11309745-11309764 None:intergenic 50.0%
GGTGGAGGTGGAATTGAGAT+TGG + chr2.3:11310841-11310860 MS.gene028996:CDS 50.0%
GTCACTGTTCTTCCGAACTC+CGG + chr2.3:11309959-11309978 MS.gene028996:CDS 50.0%
! GCAGATTGTCGTGATAGCGT+TGG + chr2.3:11310484-11310503 MS.gene028996:CDS 50.0%
! TCTGATTGCAGAGATGGTGG+AGG + chr2.3:11310826-11310845 MS.gene028996:CDS 50.0%
!! AAGGGGAGAATGGTTGGTGA+TGG - chr2.3:11309563-11309582 None:intergenic 50.0%
ACCGGGTACGTCTCTTGTAG+TGG + chr2.3:11310699-11310718 MS.gene028996:CDS 55.0%
GTCTGCTGAGGATTCAGCGA+CGG - chr2.3:11309819-11309838 None:intergenic 55.0%
TGAGGATTCAGCGACGGTGA+AGG - chr2.3:11309813-11309832 None:intergenic 55.0%
TGGAGGGATGATGAGGTTGG+AGG - chr2.3:11309738-11309757 None:intergenic 55.0%
!! GATTGCAGAGATGGTGGAGG+TGG + chr2.3:11310829-11310848 MS.gene028996:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 11309512 11310951 11309512 ID=MS.gene028996
chr2.3 mRNA 11309512 11310951 11309512 ID=MS.gene028996.t1;Parent=MS.gene028996
chr2.3 exon 11309512 11310951 11309512 ID=MS.gene028996.t1.exon1;Parent=MS.gene028996.t1
chr2.3 CDS 11309512 11310951 11309512 ID=cds.MS.gene028996.t1;Parent=MS.gene028996.t1
Gene Sequence

>MS.gene028996

ATGAAGGTGATAGAACATAGTCAAGTTGCACCACCACCAAATTTAGTTCCATCACCAACCATTCTCCCCTTAACTTTCTTCGACATACCATGGTTTTATTGTGACCCAATTCATCGTATCTTCTTCTACCACTTTCCTCATCCAACTCATCACTTCCTACAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTTCCCTTCACCTCCAACCTCATCATCCCTCCAAATTCCCATAACACTCCTCCTTACATACGTTACCTTGATGAAGACTCTATCTCCTTCACCGTCGCTGAATCCTCAGCAGACTTCAACATTCTCGTATCTGATTCACAAGATGCTCAAAACTGGCACCCTCTTGTTCCAAATTTACCTCCACCTCGTATAGAACAAGATAACATTCGTGTAATCCCTATATTGGCTATTCAAGTCACTGTTCTTCCGAACTCCGGTTTCTCTATCTGCCTCAGTTACAACCATATTGCTGCAGACGGGAAATCACTTCATCATTTCATGAAATTTTGGGCCTCCCTTTCAAAAGCCATAGCAAAAAACAATAACAAAAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCACATGAAAGAAATAGAGTTAAAGATCCAAAGGGTCTTAAACTTGTATACTTGCAACAATTAGAAGATTCTGTATCAAAAGAAATGGAATCTGCGGGTTTGGTTCGAGATTCTTATGTTAGCAAGGTACGAACAACTTTGATATTGAGCTATGAACAAGTCCAGAAGTTGAAGAAATGGGTTACTGATAAATGTAAAGATAGTGAAAGAATAAAACACTTGTCTACTTTTGTTGTAACAAGTTCCTTGATTTGGTTTTGTATGATCAAATCGGAGGAGGGTGATAGCAAAAGTGATCAAGGTGAAGGTGATTGTGTTGTTGATGATAACTGCTACTTTGTGATTCTTGCAGATTGTCGTGATAGCGTTGGATTTTCATTACCAAAAACTTATTTTGGAAATTGTATTGCATCTAATGCTGTGGCTGTAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAATGGTATTGAAAAGAAGATAAGAGATTTTAAGAATGATGCTTTGTTAGGAGCTGAATCGTTGATGCCTAATTATAGGAAATTCTCTAAACCGGGTACGTCTCTTGTAGTGGTTGCTGGTTCACCAAAATTGGCTGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCGTCCGTTTCGATTTCTCTTTCTGATTGCAGAGATGGTGGAGGTGGAATTGAGATTGGTTTGGCTCTTGAGAGGTCTAGAATGACTAATTTCATATACATCTTTCAAGAACGACTTGATAACATTTGTAGCATGCGAATGAACTAA
Protein sequence

>MS.gene028996.t1

MKVIEHSQVAPPPNLVPSPTILPLTFFDIPWFYCDPIHRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFTSNLIIPPNSHNTPPYIRYLDEDSISFTVAESSADFNILVSDSQDAQNWHPLVPNLPPPRIEQDNIRVIPILAIQVTVLPNSGFSICLSYNHIAADGKSLHHFMKFWASLSKAIAKNNNKNNLSLEYSPPLDLPSHERNRVKDPKGLKLVYLQQLEDSVSKEMESAGLVRDSYVSKVRTTLILSYEQVQKLKKWVTDKCKDSERIKHLSTFVVTSSLIWFCMIKSEEGDSKSDQGEGDCVVDDNCYFVILADCRDSVGFSLPKTYFGNCIASNAVAVKRDELVGKNGIVVASNGIEKKIRDFKNDALLGAESLMPNYRKFSKPGTSLVVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSVSISLSDCRDGGGGIEIGLALERSRMTNFIYIFQERLDNICSMRMN