AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028999.t1 MTR_2g089670 81.741 471 78 2 1 471 21 483 0.0 766
MS.gene028999.t1 MTR_2g089765 75.732 478 103 7 2 471 16 488 0.0 727
MS.gene028999.t1 MTR_8g012750 65.353 482 145 13 2 469 3 476 0.0 588
MS.gene028999.t1 MTR_2g089665 63.946 441 52 4 1 440 1 335 0.0 531
MS.gene028999.t1 MTR_7g015860 44.536 485 223 12 2 467 5 462 2.68e-124 370
MS.gene028999.t1 MTR_3g028210 36.722 482 270 11 1 468 7 467 1.19e-93 291
MS.gene028999.t1 MTR_7g014330 38.557 485 241 15 1 461 1 452 3.39e-90 282
MS.gene028999.t1 MTR_2g089650 36.743 479 264 14 2 465 9 463 8.49e-90 281
MS.gene028999.t1 MTR_6g015850 36.478 477 269 10 2 468 8 460 9.69e-87 273
MS.gene028999.t1 MTR_6g015815 36.975 476 269 10 3 468 9 463 5.03e-86 271
MS.gene028999.t1 MTR_7g014230 37.448 478 252 13 3 461 5 454 8.45e-84 266
MS.gene028999.t1 MTR_2g089755 35.760 467 246 16 25 465 37 475 8.58e-82 261
MS.gene028999.t1 MTR_6g015830 35.430 477 277 11 2 468 8 463 3.00e-80 256
MS.gene028999.t1 MTR_7g014250 35.510 490 259 15 1 466 1 457 3.61e-80 256
MS.gene028999.t1 MTR_3g087640 35.052 485 271 15 3 465 10 472 2.53e-79 254
MS.gene028999.t1 MTR_2g089735 34.842 442 254 11 39 465 39 461 1.48e-77 249
MS.gene028999.t1 MTR_7g014200 33.402 488 277 16 2 467 9 470 3.61e-75 244
MS.gene028999.t1 MTR_7g014160 34.156 486 277 14 2 465 9 473 1.72e-74 242
MS.gene028999.t1 MTR_6g015320 33.476 466 281 9 7 465 11 454 2.81e-74 241
MS.gene028999.t1 MTR_6g015315 34.954 432 258 8 39 465 39 452 3.66e-71 233
MS.gene028999.t1 MTR_7g014610 33.197 488 282 14 2 465 8 475 4.19e-69 228
MS.gene028999.t1 MTR_7g013850 31.646 474 267 17 26 465 30 480 1.26e-61 208
MS.gene028999.t1 MTR_7g014620 31.957 460 260 12 21 465 11 432 8.24e-56 192
MS.gene028999.t1 MTR_7g014360 31.095 402 226 10 71 461 21 382 8.40e-52 180
MS.gene028999.t1 MTR_3g435300 36.111 288 153 11 3 279 4 271 9.65e-42 150
MS.gene028999.t1 MTR_2g089745 75.309 81 20 0 391 471 3 83 5.71e-33 120
MS.gene028999.t1 MTR_6g015310 28.346 381 192 10 74 443 23 333 9.43e-33 127
MS.gene028999.t1 MTR_7g014670 35.602 191 120 2 276 465 71 259 1.88e-31 122
MS.gene028999.t1 MTR_7g014630 32.414 290 162 11 2 276 9 279 2.74e-31 124
MS.gene028999.t1 MTR_7g014310 28.446 341 179 10 110 448 29 306 1.80e-30 120
MS.gene028999.t1 MTR_7g014180 37.989 179 96 6 2 176 7 174 3.77e-26 104
MS.gene028999.t1 MTR_8g041770 27.543 403 246 13 22 417 27 390 2.77e-23 102
MS.gene028999.t1 MTR_4g022670 25.472 424 273 16 2 417 4 392 1.53e-19 91.3
MS.gene028999.t1 MTR_3g101900 23.195 457 288 16 25 459 30 445 3.98e-19 90.1
MS.gene028999.t1 MTR_4g022720 25.971 412 249 13 19 417 18 386 5.66e-19 89.4
MS.gene028999.t1 MTR_7g026860 25.366 410 257 14 19 417 18 389 8.88e-18 85.9
MS.gene028999.t1 MTR_7g014210 39.130 115 68 2 323 435 24 138 8.17e-17 78.2
MS.gene028999.t1 MTR_3g088420 26.415 424 238 17 14 417 15 384 9.15e-17 82.8
MS.gene028999.t1 MTR_4g022800 24.586 423 279 14 2 417 4 393 1.44e-16 82.0
MS.gene028999.t1 MTR_6g045553 25.053 475 263 18 25 454 35 461 2.70e-16 81.6
MS.gene028999.t1 MTR_7g085930 23.952 501 307 17 1 468 5 464 1.10e-15 79.7
MS.gene028999.t1 MTR_3g101930 23.810 420 273 16 48 454 56 441 3.13e-15 78.2
MS.gene028999.t1 MTR_3g101970 22.645 499 288 21 2 469 6 437 3.32e-15 77.8
MS.gene028999.t1 MTR_8g079710 23.467 375 228 12 62 417 59 393 4.02e-15 77.8
MS.gene028999.t1 MTR_4g094828 22.512 422 254 18 21 417 25 398 7.84e-15 77.0
MS.gene028999.t1 MTR_7g014340 59.155 71 27 2 1 70 1 70 8.99e-15 70.5
MS.gene028999.t1 MTR_7g014205 38.136 118 53 3 321 433 18 120 9.10e-15 71.2
MS.gene028999.t1 MTR_7g114560 22.135 384 247 13 42 416 47 387 1.36e-14 76.3
MS.gene028999.t1 MTR_3g435290 34.167 120 76 2 346 465 1 117 1.69e-14 70.5
MS.gene028999.t1 MTR_8g096530 24.760 416 262 15 61 469 58 429 6.33e-14 73.9
MS.gene028999.t1 MTR_7g014220 59.375 64 25 1 17 80 10 72 2.28e-13 65.9
MS.gene028999.t1 MTR_8g079970 22.436 468 301 14 2 457 3 420 2.57e-13 72.0
MS.gene028999.t1 MTR_3g101960 23.124 493 277 22 2 454 6 436 4.35e-13 71.6
MS.gene028999.t1 MTR_7g114550 22.328 421 265 15 9 416 16 387 1.46e-12 69.7
MS.gene028999.t1 MTR_7g085990 23.197 513 300 17 1 470 1 462 5.05e-12 68.2
MS.gene028999.t1 MTR_2g007880 20.920 435 272 13 44 457 56 439 5.89e-12 67.8
MS.gene028999.t1 MTR_4g022760 24.932 369 228 13 19 377 18 347 1.04e-11 67.0
MS.gene028999.t1 MTR_7g114520 22.353 425 280 16 1 416 7 390 2.04e-11 66.2
MS.gene028999.t1 MTR_3g049150 25.939 293 175 10 145 417 129 399 9.47e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028999.t1 AT1G03940 38.622 479 255 14 3 465 9 464 3.95e-103 316
MS.gene028999.t1 AT1G03495 39.377 353 185 12 4 347 10 342 6.97e-70 226
MS.gene028999.t1 AT3G29670 33.403 476 276 16 2 465 3 449 5.38e-69 227
MS.gene028999.t1 AT5G61160 31.667 480 284 13 2 467 3 452 2.06e-62 210
MS.gene028999.t1 AT5G39090 34.382 477 256 19 2 460 5 442 3.13e-61 206
MS.gene028999.t1 AT3G29680 31.992 472 278 12 2 461 3 443 3.02e-60 204
MS.gene028999.t1 AT3G29635 31.303 476 291 13 2 465 3 454 1.48e-58 200
MS.gene028999.t1 AT3G29590 32.143 476 268 17 2 461 8 444 7.07e-57 195
MS.gene028999.t1 AT5G39080 30.658 486 286 18 2 465 5 461 5.47e-56 193
MS.gene028999.t1 AT5G39050 30.021 483 294 14 2 465 10 467 2.14e-51 181
MS.gene028999.t1 AT5G42830 24.724 453 285 16 14 449 17 430 4.05e-18 87.0
MS.gene028999.t1 AT3G48720 22.430 428 289 9 39 462 41 429 1.16e-17 85.5
MS.gene028999.t1 AT3G29690 29.605 152 101 2 311 461 28 174 1.91e-16 77.8
MS.gene028999.t1 AT2G19070 23.650 389 255 12 44 416 40 402 1.94e-16 82.0
MS.gene028999.t1 AT3G50280 25.571 438 249 19 5 417 7 392 3.58e-16 80.9
MS.gene028999.t1 AT5G67150 25.118 422 275 19 4 417 7 395 1.66e-15 79.0
MS.gene028999.t1 AT5G41040 21.925 374 254 11 56 425 63 402 1.13e-13 73.2
MS.gene028999.t1 AT5G41040 21.925 374 254 11 56 425 79 418 1.31e-13 73.2
MS.gene028999.t1 AT1G31490 23.724 392 231 14 43 417 43 383 1.16e-12 70.1

Find 98 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATTTCATGAAATTT+TGG 0.059044 2.3:-11367316 MS.gene028999:CDS
GGAGGGGTGTTATGGGAATT+TGG 0.229278 2.3:+11367593 None:intergenic
TCACTTTCTTCGACATTTCA+TGG 0.242024 2.3:-11367769 MS.gene028999:CDS
TCTAGTCTACTTCATATTCT+TGG 0.285884 2.3:-11366907 MS.gene028999:CDS
ATTCACAAGATGCTCTAAAT+TGG 0.287826 2.3:-11367490 MS.gene028999:CDS
AACTCGATGGTAGTGGTTGC+TGG 0.302599 2.3:-11366663 MS.gene028999:CDS
GATGTTTATGAGACTGATTT+TGG 0.310385 2.3:-11366627 MS.gene028999:CDS
TGCACTGCATCAGATTTCTT+TGG 0.315346 2.3:+11366594 None:intergenic
ATGATGAGGTTGGAGGAAAA+AGG 0.329263 2.3:+11367620 None:intergenic
TAAGCACTCCATCTCTTTCA+TGG 0.346789 2.3:+11367210 None:intergenic
TTGTAACATGTTCCTTGATT+TGG 0.350808 2.3:-11366980 MS.gene028999:CDS
GTATATAAGGAGGGGTGTTA+TGG 0.354673 2.3:+11367585 None:intergenic
TTTAAGAGTGATGATTTGTT+AGG 0.354935 2.3:-11366732 MS.gene028999:CDS
TCTTGTAAGTTGGTGAGTTT+AGG 0.362354 2.3:+11367173 None:intergenic
TTTAATGATTCACTATAATC+AGG 0.363977 2.3:+11366693 None:intergenic
AGGTGGAATTGAGGTTGGTT+TGG 0.381023 2.3:-11366523 MS.gene028999:CDS
CAGATAGAGAAGCCAGAGTT+TGG 0.386262 2.3:+11367377 None:intergenic
GAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.3:+11367643 None:intergenic
GTATGAGGTGAAGGCAAGTT+AGG 0.400483 2.3:+11367455 None:intergenic
GGTTGGTGATGGAAGTGAAT+TGG 0.400909 2.3:+11367802 None:intergenic
GTTGGTGATGGAAGTGAATT+GGG 0.408787 2.3:+11367803 None:intergenic
TATATAAGGAGGGGTGTTAT+GGG 0.421407 2.3:+11367586 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.3:+11367610 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.3:+11367664 None:intergenic
ATCTTGTATTTCTTGTAAGT+TGG 0.431916 2.3:+11367163 None:intergenic
GAATGGGAAGTGTTGTTTGT+AGG 0.432621 2.3:+11367681 None:intergenic
GAAGCCAGAGTTTGGTAGAA+TGG 0.432626 2.3:+11367385 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2.3:+11367572 None:intergenic
AAACTAAAGAGATGGGTTGT+TGG 0.438015 2.3:-11367041 MS.gene028999:CDS
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.3:-11366549 MS.gene028999:CDS
GTTGAAGTCTGCTGAAGATT+CGG 0.441740 2.3:+11367526 None:intergenic
GATGAGTTGGATGAGGAAAA+TGG 0.445046 2.3:+11367708 None:intergenic
ATAAAGAGAGATGAGTTAGT+TGG 0.446078 2.3:-11366807 MS.gene028999:CDS
GTCTCATAAACATCAAGTTT+AGG 0.448315 2.3:+11366636 None:intergenic
AAAGTGAGAGGGAGAGTGGT+TGG 0.459506 2.3:+11367785 None:intergenic
TACCATACAAAACCAAATCA+AGG 0.462671 2.3:+11366968 None:intergenic
GGTGGAGGTGGAATTGAGGT+TGG 0.463005 2.3:-11366528 MS.gene028999:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.3:+11367665 None:intergenic
TTGGTGAGTTTAGGAGCCGT+TGG 0.469411 2.3:+11367182 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2.3:-11366546 MS.gene028999:CDS
GTTGTTCTTTATAGATATTG+AGG 0.475545 2.3:+11366472 None:intergenic
GCAGTGCATATTGATTCGTT+CGG 0.475920 2.3:-11366579 MS.gene028999:CDS
GAAGAAAGTGAGAGGGAGAG+TGG 0.476197 2.3:+11367781 None:intergenic
AGAGGGAGAGTGGTTGGTGA+TGG 0.482203 2.3:+11367791 None:intergenic
CAACAACACAGTTATGTTGA+AGG 0.488066 2.3:-11367855 None:intergenic
GGGAATTTGGAGGGATGATG+AGG 0.494796 2.3:+11367606 None:intergenic
GATGGAAGTGAATTGGGTGG+TGG 0.495893 2.3:+11367809 None:intergenic
GGGATTGTTGTGGCTTCAAA+CGG 0.500064 2.3:-11366777 MS.gene028999:CDS
TACATGTATCGTTCCGCTCA+TGG 0.500067 2.3:-11367420 MS.gene028999:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.507278 2.3:+11367613 None:intergenic
GTTTGTAGGAAGTGATGAGT+TGG 0.516421 2.3:+11367695 None:intergenic
TGGTAGAATGGTGATTTGAA+TGG 0.518937 2.3:+11367397 None:intergenic
GGGGTGTTATGGGAATTTGG+AGG 0.522455 2.3:+11367596 None:intergenic
TGGTGAGTTTAGGAGCCGTT+GGG 0.523739 2.3:+11367183 None:intergenic
ACCACTACCATCGAGTTACC+TGG 0.531940 2.3:+11366669 None:intergenic
AAGCACTCCATCTCTTTCAT+GGG 0.531994 2.3:+11367211 None:intergenic
AAGTTCAGAAACTAAAGAGA+TGG 0.535160 2.3:-11367049 MS.gene028999:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2.3:-11366540 MS.gene028999:CDS
TACAACCATGTCGCTGCAGA+CGG 0.546173 2.3:-11367347 MS.gene028999:CDS
AGGTTGGTTTGGTTCTTGAG+AGG 0.549471 2.3:-11366512 MS.gene028999:CDS
TGAAGATTCGGCAACGGTGA+AGG 0.551527 2.3:+11367538 None:intergenic
ACTCGATGGTAGTGGTTGCT+GGG 0.554609 2.3:-11366662 MS.gene028999:CDS
ACCAGGTAACTCGATGGTAG+TGG 0.558706 2.3:-11366670 MS.gene028999:CDS
CTTCCTTCCCATGAAAGAGA+TGG 0.561446 2.3:-11367218 MS.gene028999:CDS
AGTTCAGAAACTAAAGAGAT+GGG 0.565348 2.3:-11367048 MS.gene028999:CDS
ATCACCATTCTACCAAACTC+TGG 0.574194 2.3:-11367389 MS.gene028999:CDS
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.3:+11367576 None:intergenic
ACTCCATCTCTTTCATGGGA+AGG 0.579240 2.3:+11367215 None:intergenic
AATTGGGTGGTGGTGCAACT+TGG 0.579309 2.3:+11367819 None:intergenic
AGATGGTGGAGGTGGAATTG+AGG 0.584627 2.3:-11366532 MS.gene028999:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.585446 2.3:+11367701 None:intergenic
CAAAGTAAACGTGATTGCAC+TGG 0.586639 2.3:-11366936 MS.gene028999:CDS
GGGTGTTATGGGAATTTGGA+GGG 0.588819 2.3:+11367597 None:intergenic
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.3:+11367575 None:intergenic
TGCATCTCGAACGAGACTTG+TGG 0.601182 2.3:+11367118 None:intergenic
TCACCTCATACAGAACAAAA+CGG 0.603095 2.3:-11367443 MS.gene028999:CDS
GTCTGCTGAAGATTCGGCAA+CGG 0.604958 2.3:+11367532 None:intergenic
CAGCGACATGGTTGTAAGTG+AGG 0.605491 2.3:+11367354 None:intergenic
AAAAGGGAAGAAGTGTTGGA+GGG 0.615109 2.3:+11367637 None:intergenic
AATATCTATAAAGAACAACT+TGG 0.616710 2.3:-11366468 MS.gene028999:CDS
GGTGATGGAAGTGAATTGGG+TGG 0.622854 2.3:+11367806 None:intergenic
AGATGCAGCTTACGCTAACA+AGG 0.622869 2.3:-11367102 MS.gene028999:CDS
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2.3:-11366543 MS.gene028999:CDS
TCATGGGAAGGAAGATCAAG+AGG 0.626174 2.3:+11367227 None:intergenic
TTGTCTTGCATCTTATGCTG+TGG 0.635139 2.3:-11366832 MS.gene028999:CDS
AAATGTCGAAGAAAGTGAGA+GGG 0.639421 2.3:+11367774 None:intergenic
GAAATGTCGAAGAAAGTGAG+AGG 0.646541 2.3:+11367773 None:intergenic
ATTAAAACCAGGTAACTCGA+TGG 0.652136 2.3:-11366676 MS.gene028999:CDS
AAGGCAAGTTAGGAACAAGA+TGG 0.656225 2.3:+11367465 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2.3:+11367558 None:intergenic
TATAGTGAATCATTAAAACC+AGG 0.671327 2.3:-11366687 MS.gene028999:CDS
TGGAGTGCTTAAACACCCAA+CGG 0.672231 2.3:-11367198 MS.gene028999:CDS
TGGGAAGGAAGATCAAGAGG+CGG 0.672634 2.3:+11367230 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.3:+11367577 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2.3:+11367501 None:intergenic
GAAGAAGATACGTTTAACAG+CGG 0.689203 2.3:+11367733 None:intergenic
GTGATTTGAATGGCCATGAG+CGG 0.699647 2.3:+11367407 None:intergenic
ACAACAAAAGTTGACATGTG+CGG 0.758347 2.3:+11366999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCTATAAAGAACAACT+TGG - chr2.3:11367823-11367842 MS.gene028999:CDS 20.0%
!! TTTAATGATTCACTATAATC+AGG + chr2.3:11367601-11367620 None:intergenic 20.0%
!!! AGAAATACAAGATTTTGTTT+TGG - chr2.3:11367138-11367157 MS.gene028999:CDS 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG + chr2.3:11367442-11367461 None:intergenic 20.0%
!!! TCATCATTTCATGAAATTTT+GGG - chr2.3:11366976-11366995 MS.gene028999:CDS 20.0%
!!! TCATTACCAAAAACTTATTT+TGG - chr2.3:11367433-11367452 MS.gene028999:CDS 20.0%
!!! TTCATCATTTCATGAAATTT+TGG - chr2.3:11366975-11366994 MS.gene028999:CDS 20.0%
! ATCTTGTATTTCTTGTAAGT+TGG + chr2.3:11367131-11367150 None:intergenic 25.0%
! ATGAGTTAGTTGGAAAAAAT+GGG - chr2.3:11367494-11367513 MS.gene028999:CDS 25.0%
! GTTGTTCTTTATAGATATTG+AGG + chr2.3:11367822-11367841 None:intergenic 25.0%
! TATAGTGAATCATTAAAACC+AGG - chr2.3:11367604-11367623 MS.gene028999:CDS 25.0%
!!! GTTGTTATTGTTTTTTGCTA+TGG + chr2.3:11367017-11367036 None:intergenic 25.0%
!!! TTTAAGAGTGATGATTTGTT+AGG - chr2.3:11367559-11367578 MS.gene028999:CDS 25.0%
AAGTTCAGAAACTAAAGAGA+TGG - chr2.3:11367242-11367261 MS.gene028999:CDS 30.0%
AGTTCAGAAACTAAAGAGAT+GGG - chr2.3:11367243-11367262 MS.gene028999:CDS 30.0%
ATAAAGAGAGATGAGTTAGT+TGG - chr2.3:11367484-11367503 MS.gene028999:CDS 30.0%
GATGAGTTAGTTGGAAAAAA+TGG - chr2.3:11367493-11367512 MS.gene028999:CDS 30.0%
GTCTCATAAACATCAAGTTT+AGG + chr2.3:11367658-11367677 None:intergenic 30.0%
TACCATACAAAACCAAATCA+AGG + chr2.3:11367326-11367345 None:intergenic 30.0%
TCATCAAGGTAACGTATATA+AGG + chr2.3:11366722-11366741 None:intergenic 30.0%
TCTAGTCTACTTCATATTCT+TGG - chr2.3:11367384-11367403 MS.gene028999:CDS 30.0%
TTGTAACATGTTCCTTGATT+TGG - chr2.3:11367311-11367330 MS.gene028999:CDS 30.0%
! ATTCACAAGATGCTCTAAAT+TGG - chr2.3:11366801-11366820 MS.gene028999:CDS 30.0%
!! GATGTTTATGAGACTGATTT+TGG - chr2.3:11367664-11367683 MS.gene028999:CDS 30.0%
!! TTATGAGACTGATTTTGGAT+GGG - chr2.3:11367669-11367688 MS.gene028999:CDS 30.0%
!! TTTATGAGACTGATTTTGGA+TGG - chr2.3:11367668-11367687 MS.gene028999:CDS 30.0%
!!! AGATTTTGTTTTGGAAGTCA+TGG - chr2.3:11367147-11367166 MS.gene028999:CDS 30.0%
!!! TTCCTTGATTTGGTTTTGTA+TGG - chr2.3:11367321-11367340 MS.gene028999:CDS 30.0%
AAATGTCGAAGAAAGTGAGA+GGG + chr2.3:11366520-11366539 None:intergenic 35.0%
AAGGTAACGTATATAAGGAG+GGG + chr2.3:11366717-11366736 None:intergenic 35.0%
ACAACAAAAGTTGACATGTG+CGG + chr2.3:11367295-11367314 None:intergenic 35.0%
ATTAAAACCAGGTAACTCGA+TGG - chr2.3:11367615-11367634 MS.gene028999:CDS 35.0%
CAAGGTAACGTATATAAGGA+GGG + chr2.3:11366718-11366737 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG + chr2.3:11366629-11366648 None:intergenic 35.0%
GAAGAAGATACGTTTAACAG+CGG + chr2.3:11366561-11366580 None:intergenic 35.0%
TCAAGGTAACGTATATAAGG+AGG + chr2.3:11366719-11366738 None:intergenic 35.0%
TCACCTCATACAGAACAAAA+CGG - chr2.3:11366848-11366867 MS.gene028999:CDS 35.0%
TCACTTTCTTCGACATTTCA+TGG - chr2.3:11366522-11366541 MS.gene028999:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG - chr2.3:11367742-11367761 MS.gene028999:CDS 35.0%
TGGAAAAAATGGGATTGTTG+TGG - chr2.3:11367504-11367523 MS.gene028999:CDS 35.0%
TGGTAGAATGGTGATTTGAA+TGG + chr2.3:11366897-11366916 None:intergenic 35.0%
! TTTTGTTCTGTATGAGGTGA+AGG + chr2.3:11366848-11366867 None:intergenic 35.0%
!! AAACTAAAGAGATGGGTTGT+TGG - chr2.3:11367250-11367269 MS.gene028999:CDS 35.0%
!! TATATAAGGAGGGGTGTTAT+GGG + chr2.3:11366708-11366727 None:intergenic 35.0%
!! TATGAGACTGATTTTGGATG+GGG - chr2.3:11367670-11367689 MS.gene028999:CDS 35.0%
!! TCTTGTAAGTTGGTGAGTTT+AGG + chr2.3:11367121-11367140 None:intergenic 35.0%
AAGCACTCCATCTCTTTCAT+GGG + chr2.3:11367083-11367102 None:intergenic 40.0%
AAGGCAAGTTAGGAACAAGA+TGG + chr2.3:11366829-11366848 None:intergenic 40.0%
AGGAGATAGAGTCTTCATCA+AGG + chr2.3:11366736-11366755 None:intergenic 40.0%
ATCACCATTCTACCAAACTC+TGG - chr2.3:11366902-11366921 MS.gene028999:CDS 40.0%
ATGATGAGGTTGGAGGAAAA+AGG + chr2.3:11366674-11366693 None:intergenic 40.0%
CAAAGTAAACGTGATTGCAC+TGG - chr2.3:11367355-11367374 MS.gene028999:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG + chr2.3:11366793-11366812 None:intergenic 40.0%
CTTTCTGATTGTAGAGATGG+TGG - chr2.3:11367745-11367764 MS.gene028999:CDS 40.0%
GAAATGTCGAAGAAAGTGAG+AGG + chr2.3:11366521-11366540 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG + chr2.3:11366630-11366649 None:intergenic 40.0%
GTTGAAGTCTGCTGAAGATT+CGG + chr2.3:11366768-11366787 None:intergenic 40.0%
GTTTGTAGGAAGTGATGAGT+TGG + chr2.3:11366599-11366618 None:intergenic 40.0%
TAAGCACTCCATCTCTTTCA+TGG + chr2.3:11367084-11367103 None:intergenic 40.0%
TGATGAGGTTGGAGGAAAAA+GGG + chr2.3:11366673-11366692 None:intergenic 40.0%
TGCACTGCATCAGATTTCTT+TGG + chr2.3:11367700-11367719 None:intergenic 40.0%
TTGTCTTGCATCTTATGCTG+TGG - chr2.3:11367459-11367478 MS.gene028999:CDS 40.0%
! AGGAAAAAGGGAAGAAGTGT+TGG + chr2.3:11366661-11366680 None:intergenic 40.0%
! GATGAGTTGGATGAGGAAAA+TGG + chr2.3:11366586-11366605 None:intergenic 40.0%
!! AAAAAGGGAAGAAGTGTTGG+AGG + chr2.3:11366658-11366677 None:intergenic 40.0%
!! AAAAGGGAAGAAGTGTTGGA+GGG + chr2.3:11366657-11366676 None:intergenic 40.0%
!! GAATGGGAAGTGTTGTTTGT+AGG + chr2.3:11366613-11366632 None:intergenic 40.0%
!! GCAGTGCATATTGATTCGTT+CGG - chr2.3:11367712-11367731 MS.gene028999:CDS 40.0%
!! GTACCGTTTTGTTCTGTATG+AGG + chr2.3:11366854-11366873 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+TGG + chr2.3:11366709-11366728 None:intergenic 40.0%
!! GTTGGTGATGGAAGTGAATT+GGG + chr2.3:11366491-11366510 None:intergenic 40.0%
!! TGCTATGGCTTTTGAAAGAG+AGG + chr2.3:11367002-11367021 None:intergenic 40.0%
ACTCCATCTCTTTCATGGGA+AGG + chr2.3:11367079-11367098 None:intergenic 45.0%
AGATGCAGCTTACGCTAACA+AGG - chr2.3:11367189-11367208 MS.gene028999:CDS 45.0%
ATTTGGAGGGATGATGAGGT+TGG + chr2.3:11366684-11366703 None:intergenic 45.0%
CAGATAGAGAAGCCAGAGTT+TGG + chr2.3:11366917-11366936 None:intergenic 45.0%
CTTCCTTCCCATGAAAGAGA+TGG - chr2.3:11367073-11367092 MS.gene028999:CDS 45.0%
GAAGCCAGAGTTTGGTAGAA+TGG + chr2.3:11366909-11366928 None:intergenic 45.0%
GGGATTGTTGTGGCTTCAAA+CGG - chr2.3:11367514-11367533 MS.gene028999:CDS 45.0%
GTATGAGGTGAAGGCAAGTT+AGG + chr2.3:11366839-11366858 None:intergenic 45.0%
GTGATTTGAATGGCCATGAG+CGG + chr2.3:11366887-11366906 None:intergenic 45.0%
TACATGTATCGTTCCGCTCA+TGG - chr2.3:11366871-11366890 MS.gene028999:CDS 45.0%
TCATGGGAAGGAAGATCAAG+AGG + chr2.3:11367067-11367086 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG + chr2.3:11366593-11366612 None:intergenic 45.0%
! AGGTGGAATTGAGGTTGGTT+TGG - chr2.3:11367768-11367787 MS.gene028999:CDS 45.0%
! GGGTGTTATGGGAATTTGGA+GGG + chr2.3:11366697-11366716 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG - chr2.3:11367748-11367767 MS.gene028999:CDS 45.0%
! TGGAGTGCTTAAACACCCAA+CGG - chr2.3:11367093-11367112 MS.gene028999:CDS 45.0%
!! AGGTTGGTTTGGTTCTTGAG+AGG - chr2.3:11367779-11367798 MS.gene028999:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG + chr2.3:11366651-11366670 None:intergenic 45.0%
!! GGTTGGTGATGGAAGTGAAT+TGG + chr2.3:11366492-11366511 None:intergenic 45.0%
AAAGTGAGAGGGAGAGTGGT+TGG + chr2.3:11366509-11366528 None:intergenic 50.0%
ACCACTACCATCGAGTTACC+TGG + chr2.3:11367625-11367644 None:intergenic 50.0%
ACCAGGTAACTCGATGGTAG+TGG - chr2.3:11367621-11367640 MS.gene028999:CDS 50.0%
CAGCGACATGGTTGTAAGTG+AGG + chr2.3:11366940-11366959 None:intergenic 50.0%
GAAGAAAGTGAGAGGGAGAG+TGG + chr2.3:11366513-11366532 None:intergenic 50.0%
GATGGAAGTGAATTGGGTGG+TGG + chr2.3:11366485-11366504 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG + chr2.3:11366688-11366707 None:intergenic 50.0%
GTCTGCTGAAGATTCGGCAA+CGG + chr2.3:11366762-11366781 None:intergenic 50.0%
TACAACCATGTCGCTGCAGA+CGG - chr2.3:11366944-11366963 MS.gene028999:CDS 50.0%
TGAAGATTCGGCAACGGTGA+AGG + chr2.3:11366756-11366775 None:intergenic 50.0%
TGCATCTCGAACGAGACTTG+TGG + chr2.3:11367176-11367195 None:intergenic 50.0%
TGGGAAGGAAGATCAAGAGG+CGG + chr2.3:11367064-11367083 None:intergenic 50.0%
TGGTGAGTTTAGGAGCCGTT+GGG + chr2.3:11367111-11367130 None:intergenic 50.0%
TTGGTGAGTTTAGGAGCCGT+TGG + chr2.3:11367112-11367131 None:intergenic 50.0%
! AATTGGGTGGTGGTGCAACT+TGG + chr2.3:11366475-11366494 None:intergenic 50.0%
! ATTTTCCGTCTGCAGCGACA+TGG + chr2.3:11366952-11366971 None:intergenic 50.0%
! GGGGTGTTATGGGAATTTGG+AGG + chr2.3:11366698-11366717 None:intergenic 50.0%
!! AACTCGATGGTAGTGGTTGC+TGG - chr2.3:11367628-11367647 MS.gene028999:CDS 50.0%
!! ACTCGATGGTAGTGGTTGCT+GGG - chr2.3:11367629-11367648 MS.gene028999:CDS 50.0%
!! AGATGGTGGAGGTGGAATTG+AGG - chr2.3:11367759-11367778 MS.gene028999:CDS 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG - chr2.3:11367751-11367770 MS.gene028999:CDS 50.0%
!! GGAGGGGTGTTATGGGAATT+TGG + chr2.3:11366701-11366720 None:intergenic 50.0%
!! GGTGATGGAAGTGAATTGGG+TGG + chr2.3:11366488-11366507 None:intergenic 50.0%
GGTGGAGGTGGAATTGAGGT+TGG - chr2.3:11367763-11367782 MS.gene028999:CDS 55.0%
TGGAGGGATGATGAGGTTGG+AGG + chr2.3:11366681-11366700 None:intergenic 55.0%
!! AGAGGGAGAGTGGTTGGTGA+TGG + chr2.3:11366503-11366522 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 11366449 11367864 11366449 ID=MS.gene028999
chr2.3 mRNA 11366449 11367864 11366449 ID=MS.gene028999.t1;Parent=MS.gene028999
chr2.3 exon 11366449 11367864 11366449 ID=MS.gene028999.t1.exon1;Parent=MS.gene028999.t1
chr2.3 CDS 11366449 11367864 11366449 ID=cds.MS.gene028999.t1;Parent=MS.gene028999.t1
Gene Sequence

>MS.gene028999

ATGTTGAAGGTAATTGAACATAGCCAAGTTGCACCACCACCCAATTCACTTCCATCACCAACCACTCTCCCTCTCACTTTCTTCGACATTTCATGGCTTTACTGTCAATCCGCTGTTAAACGTATCTTCTTCTACCATTTTCCTCATCCAACTCATCACTTCCTACAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCTTTTTCCTCCAACCTCATCATCCCTCCAAATTCCCATAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTATCTCCTTCACCGTTGCCGAATCTTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCTAAATTGGCACCATCTTGTTCCTAACTTGCCTTCACCTCATACAGAACAAAACGGTACATGTATCGTTCCGCTCATGGCCATTCAAATCACCATTCTACCAAACTCTGGCTTCTCTATCTGCCTCACTTACAACCATGTCGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATTTTGGGCCTCTCTTTCAAAAGCCATAGCAAAAAACAATAACAACAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCCCATGAAAGAGATGGAGTGCTTAAACACCCAACGGCTCCTAAACTCACCAACTTACAAGAAATACAAGATTTTGTTTTGGAAGTCATGGAATCCACAAGTCTCGTTCGAGATGCAGCTTACGCTAACAAGGTACGAACTAGTTTAGTATTGAGTCGTGAAGAAGTTCAGAAACTAAAGAGATGGGTTGTTGGTAAAAGTAAAGAAACAACACCGCACATGTCAACTTTTGTTGTAACATGTTCCTTGATTTGGTTTTGTATGGTAAAATCAGAGCAAAGTAAACGTGATTGCACTGGTGATGATCTAGTCTACTTCATATTCTTGGCAGATTGTCGTGATCGTTCTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATGCTGTGGCTATAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAACGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTGATGATTTGTTAGGAGTTGAAACGTTGATACCTGATTATAGTGAATCATTAAAACCAGGTAACTCGATGGTAGTGGTTGCTGGGTCACCTAAACTTGATGTTTATGAGACTGATTTTGGATGGGGAAAACCAAAGAAATCTGATGCAGTGCATATTGATTCGTTCGGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAGGTTGGTTTGGTTCTTGAGAGGTCTCAAATGACTAATTTCCTCAATATCTATAAAGAACAACTTGGTGATATTTGTAGCATCTGA
Protein sequence

>MS.gene028999.t1

MLKVIEHSQVAPPPNSLPSPTTLPLTFFDISWLYCQSAVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPPNSHNTPPYIRYLDEDSISFTVAESSADFNILVSDSQDALNWHHLVPNLPSPHTEQNGTCIVPLMAIQITILPNSGFSICLTYNHVAADGKSLHHFMKFWASLSKAIAKNNNNNNLSLEYSPPLDLPSHERDGVLKHPTAPKLTNLQEIQDFVLEVMESTSLVRDAAYANKVRTSLVLSREEVQKLKRWVVGKSKETTPHMSTFVVTCSLIWFCMVKSEQSKRDCTGDDLVYFIFLADCRDRSEFSLPKTYFGNCLASYAVAIKRDELVGKNGIVVASNGIEKKIRDFKSDDLLGVETLIPDYSESLKPGNSMVVVAGSPKLDVYETDFGWGKPKKSDAVHIDSFGSISLSDCRDGGGGIEVGLVLERSQMTNFLNIYKEQLGDICSI