AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043350.t1 MTR_2g089765 86.792 477 58 3 1 476 16 488 0.0 850
MS.gene043350.t1 MTR_2g089670 70.146 479 123 6 1 476 22 483 0.0 653
MS.gene043350.t1 MTR_8g012750 67.284 486 135 11 1 474 3 476 0.0 616
MS.gene043350.t1 MTR_2g089665 58.929 448 67 7 1 445 2 335 1.17e-168 479
MS.gene043350.t1 MTR_7g015860 42.171 479 245 9 1 470 5 460 1.79e-120 360
MS.gene043350.t1 MTR_3g028210 36.082 485 273 10 1 473 8 467 8.23e-98 302
MS.gene043350.t1 MTR_7g014330 37.888 483 249 14 2 466 3 452 1.05e-89 281
MS.gene043350.t1 MTR_2g089650 35.318 487 272 13 1 473 9 466 1.27e-89 281
MS.gene043350.t1 MTR_2g089755 35.546 467 259 13 24 473 37 478 1.32e-85 271
MS.gene043350.t1 MTR_2g089735 34.490 461 261 11 28 473 30 464 1.03e-81 261
MS.gene043350.t1 MTR_6g015850 35.551 481 274 10 1 473 8 460 2.01e-81 260
MS.gene043350.t1 MTR_3g087640 34.350 492 273 16 2 471 10 473 9.68e-81 258
MS.gene043350.t1 MTR_7g014230 36.326 479 262 13 2 466 5 454 1.02e-80 258
MS.gene043350.t1 MTR_7g014250 35.759 481 262 13 2 466 3 452 4.54e-80 256
MS.gene043350.t1 MTR_6g015830 36.853 464 257 11 18 473 28 463 1.59e-79 255
MS.gene043350.t1 MTR_6g015815 35.258 485 271 13 2 473 9 463 1.05e-78 253
MS.gene043350.t1 MTR_7g014200 33.401 491 279 14 1 472 9 470 3.65e-75 244
MS.gene043350.t1 MTR_6g015320 31.393 481 283 9 6 473 11 457 5.98e-71 233
MS.gene043350.t1 MTR_7g014160 32.645 484 293 12 1 470 9 473 2.70e-70 231
MS.gene043350.t1 MTR_6g015315 31.798 456 271 7 28 473 30 455 6.82e-69 227
MS.gene043350.t1 MTR_7g014610 32.329 498 286 15 1 475 8 477 1.66e-68 227
MS.gene043350.t1 MTR_7g013850 31.290 473 276 12 25 470 30 480 8.01e-63 212
MS.gene043350.t1 MTR_7g014620 32.473 465 257 12 20 470 11 432 2.14e-58 199
MS.gene043350.t1 MTR_7g014360 31.527 406 226 11 69 466 21 382 3.74e-48 170
MS.gene043350.t1 MTR_3g435300 35.507 276 152 8 2 267 4 263 1.30e-42 152
MS.gene043350.t1 MTR_2g089745 81.928 83 15 0 394 476 1 83 6.14e-37 130
MS.gene043350.t1 MTR_6g015310 26.633 398 203 10 66 448 10 333 3.83e-32 125
MS.gene043350.t1 MTR_7g014310 29.310 348 172 10 108 452 29 305 5.07e-32 124
MS.gene043350.t1 MTR_7g014630 31.818 286 166 8 1 272 9 279 1.56e-30 122
MS.gene043350.t1 MTR_7g014670 33.333 198 122 2 274 470 71 259 9.03e-30 117
MS.gene043350.t1 MTR_7g014180 37.640 178 97 5 1 174 7 174 4.01e-24 99.4
MS.gene043350.t1 MTR_8g041770 24.672 458 280 14 24 473 30 430 4.33e-19 89.7
MS.gene043350.t1 MTR_4g022720 23.146 445 280 12 24 455 24 419 7.35e-19 89.4
MS.gene043350.t1 MTR_4g022825 25.182 413 250 15 24 422 24 391 4.10e-17 84.0
MS.gene043350.t1 MTR_8g079710 23.747 459 267 15 21 454 26 426 5.08e-17 83.6
MS.gene043350.t1 MTR_4g094842 23.171 492 304 19 1 466 4 447 1.50e-16 82.0
MS.gene043350.t1 MTR_7g014210 38.261 115 69 2 328 440 24 138 1.93e-16 77.4
MS.gene043350.t1 MTR_4g022800 23.219 379 235 13 60 422 55 393 6.12e-16 80.1
MS.gene043350.t1 MTR_3g070170 21.789 436 272 13 54 459 60 456 1.35e-15 79.3
MS.gene043350.t1 MTR_4g022290 22.222 459 277 16 18 452 24 426 1.90e-15 79.0
MS.gene043350.t1 MTR_2g105330 23.490 447 276 19 40 473 39 432 3.13e-15 78.2
MS.gene043350.t1 MTR_2g064495 23.529 442 276 19 40 468 39 431 3.43e-15 77.8
MS.gene043350.t1 MTR_3g435290 34.711 121 76 2 351 471 1 118 5.98e-15 71.6
MS.gene043350.t1 MTR_4g094828 21.564 422 264 14 20 422 25 398 6.41e-15 77.0
MS.gene043350.t1 MTR_4g022670 23.394 436 273 15 1 422 4 392 8.70e-15 76.6
MS.gene043350.t1 MTR_3g026310 22.831 438 301 11 22 452 22 429 2.00e-14 75.5
MS.gene043350.t1 MTR_7g014340 55.882 68 29 1 2 68 3 70 3.81e-14 68.6
MS.gene043350.t1 MTR_7g014205 35.593 118 56 3 326 438 18 120 4.86e-14 68.9
MS.gene043350.t1 MTR_3g098980 22.249 409 268 10 59 462 65 428 5.54e-14 74.3
MS.gene043350.t1 MTR_7g085930 22.136 515 315 19 1 478 5 470 7.68e-14 73.9
MS.gene043350.t1 MTR_7g014220 55.556 63 28 0 16 78 10 72 4.02e-13 65.1
MS.gene043350.t1 MTR_8g096530 24.065 428 257 17 59 474 58 429 1.07e-12 70.1
MS.gene043350.t1 MTR_7g114490 21.716 373 233 9 59 421 64 387 2.42e-12 69.3
MS.gene043350.t1 MTR_7g114560 22.308 390 252 10 37 421 44 387 4.54e-12 68.2
MS.gene043350.t1 MTR_4g097090 23.174 397 255 8 40 421 45 406 9.09e-12 67.4
MS.gene043350.t1 MTR_3g049150 24.190 401 234 16 48 422 43 399 8.35e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043350.t1 AT1G03940 40.787 483 255 14 2 475 9 469 5.28e-107 326
MS.gene043350.t1 AT1G03495 41.011 356 181 11 3 352 10 342 4.08e-73 234
MS.gene043350.t1 AT3G29670 31.250 480 287 13 1 470 3 449 5.76e-65 217
MS.gene043350.t1 AT3G29635 31.198 484 293 11 1 473 3 457 7.40e-63 211
MS.gene043350.t1 AT5G61160 32.515 489 274 15 1 472 3 452 1.58e-62 210
MS.gene043350.t1 AT3G29590 31.687 486 273 18 1 471 8 449 5.89e-58 198
MS.gene043350.t1 AT3G29680 31.535 482 283 13 1 471 3 448 8.89e-58 197
MS.gene043350.t1 AT5G39090 31.237 477 287 14 1 470 5 447 9.62e-56 192
MS.gene043350.t1 AT5G39050 29.448 489 299 12 1 472 10 469 2.28e-53 186
MS.gene043350.t1 AT5G39080 28.247 485 291 14 1 463 5 454 2.46e-51 181
MS.gene043350.t1 AT2G19070 23.714 447 284 13 42 468 40 449 7.13e-19 89.4
MS.gene043350.t1 AT3G29690 32.716 162 97 4 315 472 27 180 5.66e-17 79.3
MS.gene043350.t1 AT3G50270 23.570 437 270 15 3 422 8 397 1.34e-15 79.3
MS.gene043350.t1 AT3G48720 21.429 434 283 11 37 462 41 424 7.18e-14 73.9
MS.gene043350.t1 AT5G41040 21.594 389 253 11 59 439 68 412 3.51e-13 71.6
MS.gene043350.t1 AT5G41040 21.594 389 253 11 59 439 84 428 5.72e-13 71.2
MS.gene043350.t1 AT1G31490 22.902 441 258 16 41 455 43 427 9.26e-12 67.4
MS.gene043350.t1 AT3G29720 29.534 193 116 6 99 288 26 201 2.17e-11 63.9

Find 98 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATTTCATGAAATTT+TGG 0.059044 2.2:+10187629 MS.gene043350:CDS
GTCACTGTTCTTCCAAATTC+TGG 0.075389 2.2:+10187556 MS.gene043350:CDS
GGAGGGGTGTTAAGGGAATT+TGG 0.209569 2.2:-10187352 None:intergenic
CAAATAGACAACCCAGAATT+TGG 0.217457 2.2:-10187568 None:intergenic
GTCTCATAAACAGCCAATTT+TGG 0.236198 2.2:-10188330 None:intergenic
GCTGTTTATGAGACTGATTT+TGG 0.237069 2.2:+10188339 MS.gene043350:CDS
AATCGTTGATGCCTAATTAT+AGG 0.244855 2.2:+10188262 MS.gene043350:CDS
GTACGAGGTGGAGGTAAATT+TGG 0.264562 2.2:-10187490 None:intergenic
TTAGAGAATTTCCTATAATT+AGG 0.272716 2.2:-10188273 None:intergenic
CATCCCTATAATGGCTATTC+AGG 0.277699 2.2:+10187534 MS.gene043350:CDS
TAACCCATTTCTTCAACTTC+TGG 0.280416 2.2:-10187894 None:intergenic
GTTGGTGATGGAACTAAATT+TGG 0.291404 2.2:-10187145 None:intergenic
GGTTGCTGGTTCACCAAAAT+TGG 0.296365 2.2:+10188317 MS.gene043350:CDS
TTTAAGAATGATGCTTTGTT+AGG 0.320839 2.2:+10188234 MS.gene043350:CDS
GTGACCTGAATAGCCATTAT+AGG 0.322860 2.2:-10187538 None:intergenic
ATGATGAGGTTGGAGGAAAA+AGG 0.329263 2.2:-10187325 None:intergenic
TTGTAACAAGTTCCTTGATT+TGG 0.331236 2.2:+10187965 MS.gene043350:CDS
TCACTGTTCTTCCAAATTCT+GGG 0.346380 2.2:+10187557 MS.gene043350:CDS
TTATAGGAAATTCTCTAAAC+CGG 0.347519 2.2:+10188278 MS.gene043350:CDS
GTATATAAGGAGGGGTGTTA+AGG 0.354241 2.2:-10187360 None:intergenic
ACGTCTCTTGTAGTGGTTGC+TGG 0.360866 2.2:+10188303 MS.gene043350:CDS
AGAAATGGAATCTGCGGGTT+TGG 0.362780 2.2:+10187813 MS.gene043350:CDS
TGAACTGCATCAGATTTCTT+AGG 0.374068 2.2:-10188372 None:intergenic
AAGTCCAGAAGTTGAAGAAA+TGG 0.376086 2.2:+10187890 MS.gene043350:CDS
TAGAAGAAGATACGATGAAT+TGG 0.382944 2.2:-10187214 None:intergenic
TATACAAGTTTAAGACCCTT+TGG 0.383445 2.2:-10187760 None:intergenic
CATTCGTGTCATCCCTATAA+TGG 0.385956 2.2:+10187525 MS.gene043350:CDS
GAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.2:-10187302 None:intergenic
TCTCTTTCTGATTGCAGAGA+TGG 0.388820 2.2:+10188417 MS.gene043350:CDS
ATTCACAAGATGCTCAAAAC+TGG 0.405633 2.2:+10187455 MS.gene043350:CDS
GAATGGGAAGTGTTATTTGT+AGG 0.411300 2.2:-10187264 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.2:-10187335 None:intergenic
TGACCTGAATAGCCATTATA+GGG 0.424676 2.2:-10187537 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.2:-10187281 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2.2:-10187373 None:intergenic
TATATAAGGAGGGGTGTTAA+GGG 0.438164 2.2:-10187359 None:intergenic
AGATTCTGTATCAAAAGAAA+TGG 0.440390 2.2:+10187798 MS.gene043350:CDS
TGGTATGTCGAAGAAAGTTA+AGG 0.445120 2.2:-10187176 None:intergenic
CTTTCTGATTGCAGAGATGG+TGG 0.446881 2.2:+10188420 MS.gene043350:CDS
GTAAAGAGAGATGAGTTAGT+TGG 0.455750 2.2:+10188159 MS.gene043350:CDS
GGTGGAGGTGGAATTGAGAT+TGG 0.460315 2.2:+10188438 MS.gene043350:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.2:-10187280 None:intergenic
AGGTGGAATTGAGATTGGTT+TGG 0.473934 2.2:+10188443 MS.gene043350:CDS
GGGAATTTGGAGGGATGATG+AGG 0.481946 2.2:-10187339 None:intergenic
GGTATGTCGAAGAAAGTTAA+GGG 0.489263 2.2:-10187175 None:intergenic
AGAAGAAGATACGATGAATT+GGG 0.491688 2.2:-10187213 None:intergenic
AGTCCAGAAGTTGAAGAAAT+GGG 0.492194 2.2:+10187891 MS.gene043350:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.507278 2.2:-10187332 None:intergenic
GGGATTGTTGTGGCTTCAAA+TGG 0.510486 2.2:+10188189 MS.gene043350:CDS
TGTAGCATGCGAATGAACTA+AGG 0.513925 2.2:+10188528 MS.gene043350:CDS
AAGGGGAGAATGGTTGGTGA+TGG 0.521926 2.2:-10187157 None:intergenic
GGTGATGGAACTAAATTTGG+TGG 0.531792 2.2:-10187142 None:intergenic
ACTCTATTTCTTTCATGTGA+AGG 0.532029 2.2:-10187730 None:intergenic
TCAAGATTCTTATGTTAGCA+AGG 0.534865 2.2:+10187837 MS.gene043350:CDS
AGATTGGTTTGGCTCTTGAG+AGG 0.535803 2.2:+10188454 MS.gene043350:CDS
GATCATACAAAACCAAATCA+AGG 0.536579 2.2:-10187977 None:intergenic
TTGTATGATCAAATCGGAGG+AGG 0.538608 2.2:+10187990 MS.gene043350:CDS
ATTTGTAGGAAGTGATGAGT+TGG 0.548154 2.2:-10187250 None:intergenic
GGTGATAGCAAAAGTGATCA+AGG 0.548302 2.2:+10188012 MS.gene043350:CDS
AAAGTTAAGGGGAGAATGGT+TGG 0.550742 2.2:-10187163 None:intergenic
TCTTGTTCAGTACGAGGTGG+AGG 0.553828 2.2:-10187499 None:intergenic
TCAAAAGAAATGGAATCTGC+GGG 0.555070 2.2:+10187808 MS.gene043350:CDS
GAAGAAAGTTAAGGGGAGAA+TGG 0.561998 2.2:-10187167 None:intergenic
GATGAGTTGGATGAGGAAAG+TGG 0.563879 2.2:-10187237 None:intergenic
ATCAAAAGAAATGGAATCTG+CGG 0.571655 2.2:+10187807 MS.gene043350:CDS
AAATAGAGTTAAAGATCCAA+AGG 0.571917 2.2:+10187744 MS.gene043350:CDS
ACCGGGTACGTCTCTTGTAG+TGG 0.574375 2.2:+10188296 MS.gene043350:CDS
GATTGCAGAGATGGTGGAGG+TGG 0.575491 2.2:+10188426 MS.gene043350:CDS
AATAGAGTTAAAGATCCAAA+GGG 0.576796 2.2:+10187745 MS.gene043350:CDS
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.2:-10187369 None:intergenic
TGAGGATTCAGCGACGGTGA+AGG 0.579651 2.2:-10187407 None:intergenic
GGGGTGTTAAGGGAATTTGG+AGG 0.579772 2.2:-10187349 None:intergenic
TACAACCATCTTGCTGCAGA+CGG 0.585188 2.2:+10187598 MS.gene043350:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.585446 2.2:-10187244 None:intergenic
GAGGTAAATTTGGAACAAGA+TGG 0.586717 2.2:-10187480 None:intergenic
TAACTTTCTTCGACATACCA+TGG 0.593348 2.2:+10187179 MS.gene043350:CDS
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.2:-10187370 None:intergenic
AGCAAAAGTGATCAAGGTGA+AGG 0.601720 2.2:+10188018 MS.gene043350:CDS
TCTGATTGCAGAGATGGTGG+AGG 0.603040 2.2:+10188423 MS.gene043350:CDS
TATAGGAAATTCTCTAAACC+GGG 0.606160 2.2:+10188279 MS.gene043350:CDS
TGTATGATCAAATCGGAGGA+GGG 0.608399 2.2:+10187991 MS.gene043350:CDS
ATCAGAAAGAGAAATCGAAA+CGG 0.609802 2.2:-10188406 None:intergenic
GGGTGTTAAGGGAATTTGGA+GGG 0.611740 2.2:-10187348 None:intergenic
AAAAGGGAAGAAGTGTTGGA+GGG 0.615109 2.2:-10187308 None:intergenic
GTCTGCTGAGGATTCAGCGA+CGG 0.615979 2.2:-10187413 None:intergenic
TCATGTGAAGGAAGATCAAG+AGG 0.624288 2.2:-10187718 None:intergenic
GATGGAACTAAATTTGGTGG+TGG 0.629084 2.2:-10187139 None:intergenic
TTGTATTGCATCTAATGCTG+TGG 0.648941 2.2:+10188134 MS.gene043350:CDS
TTGTCTTGTTCAGTACGAGG+TGG 0.652618 2.2:-10187502 None:intergenic
AGGATAGAGAGTCTTCATCA+AGG 0.656629 2.2:-10187387 None:intergenic
ACCACTACAAGAGACGTACC+CGG 0.658474 2.2:-10188297 None:intergenic
GTATGTCGAAGAAAGTTAAG+GGG 0.670105 2.2:-10187174 None:intergenic
GAGGATGTTGAAGTCTGCTG+AGG 0.672509 2.2:-10187425 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.2:-10187368 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2.2:-10187444 None:intergenic
ATGTTGTCTTGTTCAGTACG+AGG 0.683962 2.2:-10187505 None:intergenic
TGTGAAGGAAGATCAAGAGG+CGG 0.686663 2.2:-10187715 None:intergenic
ATTGGGTCACAATAAAACCA+TGG 0.688914 2.2:-10187196 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAGAATTTCCTATAATT+AGG - chr2.2:10188276-10188295 None:intergenic 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG - chr2.2:10188117-10188136 None:intergenic 20.0%
!!! TCATCATTTCATGAAATTTT+GGG + chr2.2:10187630-10187649 MS.gene043350:CDS 20.0%
!!! TCATTACCAAAAACTTATTT+TGG + chr2.2:10188108-10188127 MS.gene043350:CDS 20.0%
!!! TTCATCATTTCATGAAATTT+TGG + chr2.2:10187629-10187648 MS.gene043350:CDS 20.0%
!!! TTTGTTATTGTTTTTTGCTA+TGG - chr2.2:10187671-10187690 None:intergenic 20.0%
! AAATAGAGTTAAAGATCCAA+AGG + chr2.2:10187744-10187763 MS.gene043350:CDS 25.0%
! AATAGAGTTAAAGATCCAAA+GGG + chr2.2:10187745-10187764 MS.gene043350:CDS 25.0%
! AGATTCTGTATCAAAAGAAA+TGG + chr2.2:10187798-10187817 MS.gene043350:CDS 25.0%
! ATGAGTTAGTTGGAAAAAAT+GGG + chr2.2:10188169-10188188 MS.gene043350:CDS 25.0%
! TTATAGGAAATTCTCTAAAC+CGG + chr2.2:10188278-10188297 MS.gene043350:CDS 25.0%
!! TTTAAGAATGATGCTTTGTT+AGG + chr2.2:10188234-10188253 MS.gene043350:CDS 25.0%
!!! TTGGTTTTGTATGATCAAAT+CGG + chr2.2:10187984-10188003 MS.gene043350:CDS 25.0%
AATCGTTGATGCCTAATTAT+AGG + chr2.2:10188262-10188281 MS.gene043350:CDS 30.0%
AGAAGAAGATACGATGAATT+GGG - chr2.2:10187216-10187235 None:intergenic 30.0%
ATCAAAAGAAATGGAATCTG+CGG + chr2.2:10187807-10187826 MS.gene043350:CDS 30.0%
ATCAGAAAGAGAAATCGAAA+CGG - chr2.2:10188409-10188428 None:intergenic 30.0%
GATCATACAAAACCAAATCA+AGG - chr2.2:10187980-10187999 None:intergenic 30.0%
GATGAGTTAGTTGGAAAAAA+TGG + chr2.2:10188168-10188187 MS.gene043350:CDS 30.0%
TAGAAGAAGATACGATGAAT+TGG - chr2.2:10187217-10187236 None:intergenic 30.0%
TATAGGAAATTCTCTAAACC+GGG + chr2.2:10188279-10188298 MS.gene043350:CDS 30.0%
TCAAGATTCTTATGTTAGCA+AGG + chr2.2:10187837-10187856 MS.gene043350:CDS 30.0%
TCATCAAGGTAACGTATATA+AGG - chr2.2:10187376-10187395 None:intergenic 30.0%
TTGTAACAAGTTCCTTGATT+TGG + chr2.2:10187965-10187984 MS.gene043350:CDS 30.0%
! ACTCTATTTCTTTCATGTGA+AGG - chr2.2:10187733-10187752 None:intergenic 30.0%
! TATACAAGTTTAAGACCCTT+TGG - chr2.2:10187763-10187782 None:intergenic 30.0%
!! CTGTTTATGAGACTGATTTT+GGG + chr2.2:10188340-10188359 MS.gene043350:CDS 30.0%
!! TTTTGCTATGGCTTTTGAAA+GGG - chr2.2:10187659-10187678 None:intergenic 30.0%
!! TTTTTGCTATGGCTTTTGAA+AGG - chr2.2:10187660-10187679 None:intergenic 30.0%
AAGGTAACGTATATAAGGAG+GGG - chr2.2:10187371-10187390 None:intergenic 35.0%
AAGTCCAGAAGTTGAAGAAA+TGG + chr2.2:10187890-10187909 MS.gene043350:CDS 35.0%
AGTCCAGAAGTTGAAGAAAT+GGG + chr2.2:10187891-10187910 MS.gene043350:CDS 35.0%
ATTCACAAGATGCTCAAAAC+TGG + chr2.2:10187455-10187474 MS.gene043350:CDS 35.0%
ATTGGGTCACAATAAAACCA+TGG - chr2.2:10187199-10187218 None:intergenic 35.0%
ATTTGTAGGAAGTGATGAGT+TGG - chr2.2:10187253-10187272 None:intergenic 35.0%
CAAATAGACAACCCAGAATT+TGG - chr2.2:10187571-10187590 None:intergenic 35.0%
CAAGGTAACGTATATAAGGA+GGG - chr2.2:10187372-10187391 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG - chr2.2:10187283-10187302 None:intergenic 35.0%
GGTATGTCGAAGAAAGTTAA+GGG - chr2.2:10187178-10187197 None:intergenic 35.0%
GTAAAGAGAGATGAGTTAGT+TGG + chr2.2:10188159-10188178 MS.gene043350:CDS 35.0%
GTATGTCGAAGAAAGTTAAG+GGG - chr2.2:10187177-10187196 None:intergenic 35.0%
TAACCCATTTCTTCAACTTC+TGG - chr2.2:10187897-10187916 None:intergenic 35.0%
TAACTTTCTTCGACATACCA+TGG + chr2.2:10187179-10187198 MS.gene043350:CDS 35.0%
TCAAAAGAAATGGAATCTGC+GGG + chr2.2:10187808-10187827 MS.gene043350:CDS 35.0%
TCAAGGTAACGTATATAAGG+AGG - chr2.2:10187373-10187392 None:intergenic 35.0%
TCACTGTTCTTCCAAATTCT+GGG + chr2.2:10187557-10187576 MS.gene043350:CDS 35.0%
TGAACTGCATCAGATTTCTT+AGG - chr2.2:10188375-10188394 None:intergenic 35.0%
TGACCTGAATAGCCATTATA+GGG - chr2.2:10187540-10187559 None:intergenic 35.0%
TGGAAAAAATGGGATTGTTG+TGG + chr2.2:10188179-10188198 MS.gene043350:CDS 35.0%
TGGTATGTCGAAGAAAGTTA+AGG - chr2.2:10187179-10187198 None:intergenic 35.0%
TTGTATTGCATCTAATGCTG+TGG + chr2.2:10188134-10188153 MS.gene043350:CDS 35.0%
! GAGGTAAATTTGGAACAAGA+TGG - chr2.2:10187483-10187502 None:intergenic 35.0%
! GTCTCATAAACAGCCAATTT+TGG - chr2.2:10188333-10188352 None:intergenic 35.0%
! GTTTTGTATGATCAAATCGG+AGG + chr2.2:10187987-10188006 MS.gene043350:CDS 35.0%
!! GAATGGGAAGTGTTATTTGT+AGG - chr2.2:10187267-10187286 None:intergenic 35.0%
!! GCTGTTTATGAGACTGATTT+TGG + chr2.2:10188339-10188358 MS.gene043350:CDS 35.0%
!! GTTGGTGATGGAACTAAATT+TGG - chr2.2:10187148-10187167 None:intergenic 35.0%
!! TATATAAGGAGGGGTGTTAA+GGG - chr2.2:10187362-10187381 None:intergenic 35.0%
!! TTATGAGACTGATTTTGGGT+GGG + chr2.2:10188344-10188363 MS.gene043350:CDS 35.0%
!! TTTATGAGACTGATTTTGGG+TGG + chr2.2:10188343-10188362 MS.gene043350:CDS 35.0%
AAAGTTAAGGGGAGAATGGT+TGG - chr2.2:10187166-10187185 None:intergenic 40.0%
AGCAAAAGTGATCAAGGTGA+AGG + chr2.2:10188018-10188037 MS.gene043350:CDS 40.0%
AGGATAGAGAGTCTTCATCA+AGG - chr2.2:10187390-10187409 None:intergenic 40.0%
ATGATGAGGTTGGAGGAAAA+AGG - chr2.2:10187328-10187347 None:intergenic 40.0%
CATCCCTATAATGGCTATTC+AGG + chr2.2:10187534-10187553 MS.gene043350:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG - chr2.2:10187447-10187466 None:intergenic 40.0%
CATTCGTGTCATCCCTATAA+TGG + chr2.2:10187525-10187544 MS.gene043350:CDS 40.0%
GAAGAAAGTTAAGGGGAGAA+TGG - chr2.2:10187170-10187189 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG - chr2.2:10187284-10187303 None:intergenic 40.0%
GGTGATAGCAAAAGTGATCA+AGG + chr2.2:10188012-10188031 MS.gene043350:CDS 40.0%
GTCACTGTTCTTCCAAATTC+TGG + chr2.2:10187556-10187575 MS.gene043350:CDS 40.0%
GTGACCTGAATAGCCATTAT+AGG - chr2.2:10187541-10187560 None:intergenic 40.0%
TCATGTGAAGGAAGATCAAG+AGG - chr2.2:10187721-10187740 None:intergenic 40.0%
TCTCTTTCTGATTGCAGAGA+TGG + chr2.2:10188417-10188436 MS.gene043350:CDS 40.0%
TGATGAGGTTGGAGGAAAAA+GGG - chr2.2:10187327-10187346 None:intergenic 40.0%
TGTATGATCAAATCGGAGGA+GGG + chr2.2:10187991-10188010 MS.gene043350:CDS 40.0%
TTGTATGATCAAATCGGAGG+AGG + chr2.2:10187990-10188009 MS.gene043350:CDS 40.0%
! AGGAAAAAGGGAAGAAGTGT+TGG - chr2.2:10187315-10187334 None:intergenic 40.0%
! AGGTGGAATTGAGATTGGTT+TGG + chr2.2:10188443-10188462 MS.gene043350:CDS 40.0%
! ATGTTGTCTTGTTCAGTACG+AGG - chr2.2:10187508-10187527 None:intergenic 40.0%
! GATGGAACTAAATTTGGTGG+TGG - chr2.2:10187142-10187161 None:intergenic 40.0%
!! AAAAAGGGAAGAAGTGTTGG+AGG - chr2.2:10187312-10187331 None:intergenic 40.0%
!! AAAAGGGAAGAAGTGTTGGA+GGG - chr2.2:10187311-10187330 None:intergenic 40.0%
!! GGTGATGGAACTAAATTTGG+TGG - chr2.2:10187145-10187164 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+AGG - chr2.2:10187363-10187382 None:intergenic 40.0%
!! TATGAGACTGATTTTGGGTG+GGG + chr2.2:10188345-10188364 MS.gene043350:CDS 40.0%
AGAAATGGAATCTGCGGGTT+TGG + chr2.2:10187813-10187832 MS.gene043350:CDS 45.0%
ATTTGGAGGGATGATGAGGT+TGG - chr2.2:10187338-10187357 None:intergenic 45.0%
CTTTCTGATTGCAGAGATGG+TGG + chr2.2:10188420-10188439 MS.gene043350:CDS 45.0%
GGGATTGTTGTGGCTTCAAA+TGG + chr2.2:10188189-10188208 MS.gene043350:CDS 45.0%
GGGTGTTAAGGGAATTTGGA+GGG - chr2.2:10187351-10187370 None:intergenic 45.0%
GTACGAGGTGGAGGTAAATT+TGG - chr2.2:10187493-10187512 None:intergenic 45.0%
TACAACCATCTTGCTGCAGA+CGG + chr2.2:10187598-10187617 MS.gene043350:CDS 45.0%
TGTGAAGGAAGATCAAGAGG+CGG - chr2.2:10187718-10187737 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG - chr2.2:10187247-10187266 None:intergenic 45.0%
! ATTTTCCGTCTGCAGCAAGA+TGG - chr2.2:10187606-10187625 None:intergenic 45.0%
! GATGAGTTGGATGAGGAAAG+TGG - chr2.2:10187240-10187259 None:intergenic 45.0%
! TTGTCTTGTTCAGTACGAGG+TGG - chr2.2:10187505-10187524 None:intergenic 45.0%
!! AGATTGGTTTGGCTCTTGAG+AGG + chr2.2:10188454-10188473 MS.gene043350:CDS 45.0%
!! ATGAGACTGATTTTGGGTGG+GGG + chr2.2:10188346-10188365 MS.gene043350:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG - chr2.2:10187305-10187324 None:intergenic 45.0%
!! GGTTGCTGGTTCACCAAAAT+TGG + chr2.2:10188317-10188336 MS.gene043350:CDS 45.0%
!! TGCTATGGCTTTTGAAAGGG+AGG - chr2.2:10187656-10187675 None:intergenic 45.0%
ACCACTACAAGAGACGTACC+CGG - chr2.2:10188300-10188319 None:intergenic 50.0%
ACGTCTCTTGTAGTGGTTGC+TGG + chr2.2:10188303-10188322 MS.gene043350:CDS 50.0%
GAGGATGTTGAAGTCTGCTG+AGG - chr2.2:10187428-10187447 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG - chr2.2:10187342-10187361 None:intergenic 50.0%
GGTGGAGGTGGAATTGAGAT+TGG + chr2.2:10188438-10188457 MS.gene043350:CDS 50.0%
TCTTGTTCAGTACGAGGTGG+AGG - chr2.2:10187502-10187521 None:intergenic 50.0%
! GGGGTGTTAAGGGAATTTGG+AGG - chr2.2:10187352-10187371 None:intergenic 50.0%
! TCTGATTGCAGAGATGGTGG+AGG + chr2.2:10188423-10188442 MS.gene043350:CDS 50.0%
!! AAGGGGAGAATGGTTGGTGA+TGG - chr2.2:10187160-10187179 None:intergenic 50.0%
!! GGAGGGGTGTTAAGGGAATT+TGG - chr2.2:10187355-10187374 None:intergenic 50.0%
ACCGGGTACGTCTCTTGTAG+TGG + chr2.2:10188296-10188315 MS.gene043350:CDS 55.0%
GTCTGCTGAGGATTCAGCGA+CGG - chr2.2:10187416-10187435 None:intergenic 55.0%
TGAGGATTCAGCGACGGTGA+AGG - chr2.2:10187410-10187429 None:intergenic 55.0%
TGGAGGGATGATGAGGTTGG+AGG - chr2.2:10187335-10187354 None:intergenic 55.0%
!! GATTGCAGAGATGGTGGAGG+TGG + chr2.2:10188426-10188445 MS.gene043350:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 10187109 10188548 10187109 ID=MS.gene043350
chr2.2 mRNA 10187109 10188548 10187109 ID=MS.gene043350.t1;Parent=MS.gene043350
chr2.2 exon 10187109 10188548 10187109 ID=MS.gene043350.t1.exon1;Parent=MS.gene043350.t1
chr2.2 CDS 10187109 10188548 10187109 ID=cds.MS.gene043350.t1;Parent=MS.gene043350.t1
Gene Sequence

>MS.gene043350

ATGAAGGTGATAGAACATAGTCAAGTTGCACCACCACCAAATTTAGTTCCATCACCAACCATTCTCCCCTTAACTTTCTTCGACATACCATGGTTTTATTGTGACCCAATTCATCGTATCTTCTTCTACCACTTTCCTCATCCAACTCATCACTTCCTACAAATAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCTTTTTCCTCCAACCTCATCATCCCTCCAAATTCCCTTAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTCTATCCTTCACCGTCGCTGAATCCTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCAAAACTGGCACCATCTTGTTCCAAATTTACCTCCACCTCGTACTGAACAAGACAACATTCGTGTCATCCCTATAATGGCTATTCAGGTCACTGTTCTTCCAAATTCTGGGTTGTCTATTTGCTTAAGTTACAACCATCTTGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATTTTGGGCCTCCCTTTCAAAAGCCATAGCAAAAAACAATAACAAAAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCACATGAAAGAAATAGAGTTAAAGATCCAAAGGGTCTTAAACTTGTATACTTGCAACAATTAGAAGATTCTGTATCAAAAGAAATGGAATCTGCGGGTTTGGTTCAAGATTCTTATGTTAGCAAGGTACGAACAACTTTGATATTGAGCTATGAACAAGTCCAGAAGTTGAAGAAATGGGTTACTGATAAATGTAAAGATAGTGAAAGAATACAACACTTGTCTACTTTTGTTGTAACAAGTTCCTTGATTTGGTTTTGTATGATCAAATCGGAGGAGGGTGATAGCAAAAGTGATCAAGGTGAAGGTGATTGTGTTGTTGATGATAACTGCTACTTTGTGATTCTTGCAGATTGTCGTGATAGCGTTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTATTGCATCTAATGCTGTGGCTGTAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAATGGTATTGAAAAGAAGATAAGAGATTTTAAGAATGATGCTTTGTTAGGAGCTGAATCGTTGATGCCTAATTATAGGAAATTCTCTAAACCGGGTACGTCTCTTGTAGTGGTTGCTGGTTCACCAAAATTGGCTGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCGTCCGTTTCGATTTCTCTTTCTGATTGCAGAGATGGTGGAGGTGGAATTGAGATTGGTTTGGCTCTTGAGAGGTCTAGAATGACTAATTTCATATACATCTTTCAAGAACGACTTGATAACATTTGTAGCATGCGAATGAACTAA
Protein sequence

>MS.gene043350.t1

MKVIEHSQVAPPPNLVPSPTILPLTFFDIPWFYCDPIHRIFFYHFPHPTHHFLQITLPILKHSLSLTLQHFFPFSSNLIIPPNSLNTPPYIRYLDEDSLSFTVAESSADFNILVSDSQDAQNWHHLVPNLPPPRTEQDNIRVIPIMAIQVTVLPNSGLSICLSYNHLAADGKSLHHFMKFWASLSKAIAKNNNKNNLSLEYSPPLDLPSHERNRVKDPKGLKLVYLQQLEDSVSKEMESAGLVQDSYVSKVRTTLILSYEQVQKLKKWVTDKCKDSERIQHLSTFVVTSSLIWFCMIKSEEGDSKSDQGEGDCVVDDNCYFVILADCRDSVEFSLPKTYFGNCIASNAVAVKRDELVGKNGIVVASNGIEKKIRDFKNDALLGAESLMPNYRKFSKPGTSLVVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSVSISLSDCRDGGGGIEIGLALERSRMTNFIYIFQERLDNICSMRMN