AlfalfaGEDB | MS.gene26403

M. sativa cultivar XinJiangDaYe / MS.gene26403

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26403.t1	AAO16603.1	97.7	523	12	0	1	523	1	523	5.10E-294	1019.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26403.t1	Q9SXS3	82.3	525	88	2	1	523	1	522	2.6e-254	879.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26403.t1	Q84Y08	97.7	523	12	0	1	523	1	523	3.7e-294	1019.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049259	MS.gene26403	0.828992	6.61E-55	-1.69E-46
MS.gene049549	MS.gene26403	0.800273	1.56E-48	-1.69E-46
MS.gene049611	MS.gene26403	0.830137	3.48E-55	-1.69E-46
MS.gene049634	MS.gene26403	0.852712	3.86E-61	-1.69E-46
MS.gene049710	MS.gene26403	0.811618	6.40E-51	-1.69E-46
MS.gene050082	MS.gene26403	0.815852	7.48E-52	-1.69E-46
MS.gene05015	MS.gene26403	0.809678	1.68E-50	-1.69E-46
MS.gene050173	MS.gene26403	0.807396	5.16E-50	-1.69E-46
MS.gene050216	MS.gene26403	-0.813384	2.63E-51	-1.69E-46
MS.gene050381	MS.gene26403	0.864203	1.44E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26403.t1	MTR_4g088170	97.514	523	13	0	1	523	1	523	0.0	1055
MS.gene26403.t1	MTR_4g088195	93.117	523	34	1	1	523	1	521	0.0	992
MS.gene26403.t1	MTR_4g088160	91.587	523	42	1	1	523	1	521	0.0	981
MS.gene26403.t1	MTR_7g027960	52.033	492	227	5	35	523	32	517	0.0	548
MS.gene26403.t1	MTR_7g028020	51.509	497	232	5	30	523	27	517	0.0	545
MS.gene26403.t1	MTR_4g062500	43.400	500	263	9	26	514	27	517	5.68e-151	442
MS.gene26403.t1	MTR_4g062510	42.268	485	253	8	46	514	48	521	9.43e-146	429
MS.gene26403.t1	MTR_7g092620	45.306	490	238	9	35	514	35	504	1.14e-145	428
MS.gene26403.t1	MTR_0171s0020	42.000	500	261	7	24	514	26	505	3.09e-145	427
MS.gene26403.t1	MTR_1g107295	42.062	485	251	8	46	514	49	519	1.12e-141	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26403.t1	AT5G06900	35.849	530	286	13	1	519	11	497	1.97e-109	335
MS.gene26403.t1	AT4G15360	33.714	525	297	12	5	512	13	503	1.56e-98	308
MS.gene26403.t1	AT3G20110	36.032	494	271	11	32	515	40	498	5.37e-98	306
MS.gene26403.t1	AT3G20950	35.400	500	289	8	26	514	36	512	1.61e-95	300
MS.gene26403.t1	AT5G47990	35.565	478	276	7	46	514	53	507	2.96e-95	299
MS.gene26403.t1	AT3G20940	34.531	501	289	11	26	514	36	509	3.92e-95	299
MS.gene26403.t1	AT2G42250	34.165	521	310	10	1	512	12	508	4.58e-95	298
MS.gene26403.t1	AT4G15330	33.943	492	284	9	32	512	39	500	6.21e-95	298
MS.gene26403.t1	AT1G50520	33.809	491	289	8	45	523	53	519	1.38e-94	298
MS.gene26403.t1	AT4G15350	34.091	484	280	10	46	515	45	503	1.57e-94	297

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Find 133 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATCAATGCTCCCTC+TGG	0.420082	4.1:-22144444	None:intergenic
AAACCTCGTCTTCCTTTCAT+TGG	0.399845	4.1:+22143142	MS.gene26403:CDS
AAACTATGACAAGAGAACTG+AGG	0.725577	4.1:+22143708	MS.gene26403:CDS
AAACTTCCAGTAAGGTCCAA+AGG	0.556439	4.1:-22143395	None:intergenic
AAAGCCACTTGATGTAACTG+AGG	0.676456	4.1:+22143537	MS.gene26403:CDS
AAAGTATCAATGCTCCCTCT+GGG	0.571405	4.1:-22144443	None:intergenic
AAATATATACACCATGTTGG+TGG	0.581530	4.1:+22143015	None:intergenic
AACACCTACTGCTAAATCAA+AGG	0.588618	4.1:+22143087	MS.gene26403:CDS
AACGGATATGTGATCCCAGA+GGG	0.642249	4.1:+22144429	MS.gene26403:CDS
AACTGCAATTTCCACCAACA+TGG	0.602827	4.1:-22143026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGAGAAATCGTAGA+AGG	+	chr4.1:22143802-22143821	MS.gene26403:CDS	30.0%
AATTACAAAGGAACAGATCA+AGG	+	chr4.1:22143891-22143910	MS.gene26403:CDS	30.0%
ATCAAGTTAGGAAAACGTTA+TGG	+	chr4.1:22143208-22143227	MS.gene26403:CDS	30.0%
ATTACAAAGGAACAGATCAA+GGG	+	chr4.1:22143892-22143911	MS.gene26403:CDS	30.0%
ATTTCACACTTCTACCATTT+GGG	+	chr4.1:22144595-22144614	MS.gene26403:CDS	30.0%
CAGATCAAAACACTGAATAA+TGG	-	chr4.1:22144685-22144704	None:intergenic	30.0%
CATGGAGATCAAAATTACAA+AGG	+	chr4.1:22143879-22143898	MS.gene26403:CDS	30.0%
CATTGAATGAGTAATGTATG+TGG	-	chr4.1:22144050-22144069	None:intergenic	30.0%
CTTTCAATATTTGTCCATGT+GGG	-	chr4.1:22144719-22144738	None:intergenic	30.0%
TTATGACAATTCTGTTGCTA+TGG	+	chr4.1:22143369-22143388	MS.gene26403:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	22143028	22144854	22143028	ID=MS.gene26403
chr4.1	mRNA	22143028	22144854	22143028	ID=MS.gene26403.t1;Parent=MS.gene26403
chr4.1	exon	22143028	22143924	22143028	ID=MS.gene26403.t1.exon1;Parent=MS.gene26403.t1
chr4.1	CDS	22143028	22143924	22143028	ID=cds.MS.gene26403.t1;Parent=MS.gene26403.t1
chr4.1	exon	22144180	22144854	22144180	ID=MS.gene26403.t1.exon2;Parent=MS.gene26403.t1
chr4.1	CDS	22144180	22144854	22144180	ID=cds.MS.gene26403.t1;Parent=MS.gene26403.t1

Gene Sequence

>MS.gene26403

ATGTTGGTGGAAATTGCAGTTGCTTTATTGGTGATTGCTTTGTTTATACACTTGCGTCCAACACCTACTGCTAAATCAAAGGCACTTCGACATCTTCCTAATCCACCAAGCCCTAAACCTCGTCTTCCTTTCATTGGTCATCTTCATCTTTTGGATAACCCTCTTCTTCACCACACTCTTATCAAGTTAGGAAAACGTTATGGCCCTTTGTACACTCTTTACTTTGGTTCCATGCCTACTGTTGTTGCCTCTACCCCTGACTTGTTCAAACTTTTCCTTCAAACCCATGAAGCTACTTCCTTTAACACAAGGTTCCAAACCTCTGCTATTAGTCGTCTTACTTATGACAATTCTGTTGCTATGGTTCCCTTTGGACCTTACTGGAAGTTTATTAGAAAGCTTATCATGAACGACTTGCTCAATGCCACCACTGTTAACAAATTGAGGCCATTGAGGAGCCGAGAAATCCGTAAGGTTCTTAAGGTCATGGCTAATAGTGCTGAAACTCAAAAGCCACTTGATGTAACTGAGGAGCTTCTCAGGTGGACAAACAGCACAATCTCTACGATGATGTTGGGTGAGGCTGAAGAGGTTAGAGATATTGCTCGCGATGTTCTTAAGATCTTTGGAGAATATAGTGTTACAAACTTTATTTGGCCTTTGAACAAGTTTAAGTTTGGAAACTATGACAAGAGAACTGAGGAGATTTTCAATAAGTATGATCCTATCATTGAAAAAGTTATCAAGAAACGACAAGAGATCGTGAACAAAAGAAAAAATGGAGAAATCGTAGAAGGCGAGCAGAATGTTGTTTTTCTTGACACTTTGCTTGAATTTGCACAAGATGAGACCATGGAGATCAAAATTACAAAGGAACAGATCAAGGGTCTTGTTGTGGTGAGTTTCTTTTCTTCTAACTGCTTTGGTATTAAATACATACTCCTCCGCTCACTATTATAACCAAAAAATTACTTTTTAGGTTCACTGAAAAAAATGATCTATGTGGTCTATATTTATGACCACATACATTACTCATTCAATGAACCTAAGAAGTGGTTTTTTGCTTGTAATAGTGACCAATGAGAGTATATTACATTTTAGATAAGATTGTCTCGCTCCATTATATGCTAAGTCAAATTCCTTTGTTTGCAGGATTTCTTCTCTGCAGGGACAGATTCCACGGCTGTGGCAACAGAATGGACTTTGGCAGAGCTCATCAACAATCCAAGAGTGTTCAAGAAAGCACGAGAAGAGATTGACTCTGTTGTGGGAAAAGATAGACTTGTTGAAGAATCAGATGTTCAGAATCTTCCGTACATTCGCGCCATGGTGAAGGAGGTATTCCGCTTGCACCCACCCCTACCGGTGGTGAAGAGAAAATGCACCGAAGAGTGTGAGATCAACGGATATGTGATCCCAGAGGGAGCATTGATACTTTTCAATGTATGGCAAGTGGGAAGAGACCCAAAATATTGGGAAAAACCATTGGAATTCCGTCCAGAGAGGTTCTTAGAAAATGCTGGAGCAGGTGAAGGTGAAGCAGCTGCAATTGATCTTAGGGGTCAACATTTCACACTTCTACCATTTGGGTCTGGAAGAAGGATGTGTCCTGGAGTCAATTTGGCTACTGCAGGAATGGCCACACTACTTTCATCCATTATTCAGTGTTTTGATCTGCAAGTACCAGGCCCACATGGACAAATATTGAAAGGTGATGATGTTAAGGTTAGCATGGATGAGAGACCTGGTCTTACGGTTCCAAGAGCACATAATCTCATGTGTGTTCCACTTGCAAGAGCTGGTGTTGCTGCTAAACTCCTTTCCTGA

Protein sequence

>MS.gene26403.t1

MLVEIAVALLVIALFIHLRPTPTAKSKALRHLPNPPSPKPRLPFIGHLHLLDNPLLHHTLIKLGKRYGPLYTLYFGSMPTVVASTPDLFKLFLQTHEATSFNTRFQTSAISRLTYDNSVAMVPFGPYWKFIRKLIMNDLLNATTVNKLRPLRSREIRKVLKVMANSAETQKPLDVTEELLRWTNSTISTMMLGEAEEVRDIARDVLKIFGEYSVTNFIWPLNKFKFGNYDKRTEEIFNKYDPIIEKVIKKRQEIVNKRKNGEIVEGEQNVVFLDTLLEFAQDETMEIKITKEQIKGLVVDFFSAGTDSTAVATEWTLAELINNPRVFKKAREEIDSVVGKDRLVEESDVQNLPYIRAMVKEVFRLHPPLPVVKRKCTEECEINGYVIPEGALILFNVWQVGRDPKYWEKPLEFRPERFLENAGAGEGEAAAIDLRGQHFTLLPFGSGRRMCPGVNLATAGMATLLSSIIQCFDLQVPGPHGQILKGDDVKVSMDERPGLTVPRAHNLMCVPLARAGVAAKLLS