AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28724


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28724.t1 MTR_4g094492 95.203 542 26 0 1 542 1 542 0.0 1048
MS.gene28724.t1 MTR_4g094488 80.220 546 101 3 1 542 1 543 0.0 877
MS.gene28724.t1 MTR_4g094495 80.146 549 99 5 1 542 1 546 0.0 877
MS.gene28724.t1 MTR_4g094478 78.479 539 111 2 1 537 1 536 0.0 858
MS.gene28724.t1 MTR_4g094480 77.206 544 119 2 1 542 1 541 0.0 851
MS.gene28724.t1 MTR_4g094418 70.776 438 120 3 104 536 1 435 0.0 651
MS.gene28724.t1 MTR_2g031560 51.992 527 242 5 13 536 5 523 0.0 573
MS.gene28724.t1 MTR_2g031390 52.239 536 240 8 5 536 6 529 0.0 569
MS.gene28724.t1 MTR_3g009880 55.492 528 221 9 12 536 4 520 0.0 561
MS.gene28724.t1 MTR_3g009760 54.104 536 226 9 6 536 2 522 0.0 560
MS.gene28724.t1 MTR_3g009820 53.458 535 231 8 6 536 2 522 0.0 553
MS.gene28724.t1 MTR_2g031420 54.019 535 231 7 6 536 4 527 0.0 552
MS.gene28724.t1 MTR_4g094520 51.698 530 246 6 10 536 10 532 0.0 546
MS.gene28724.t1 MTR_2g031460 53.618 539 227 7 6 536 4 527 0.0 546
MS.gene28724.t1 MTR_4g094498 55.578 502 215 5 35 536 41 534 0.0 545
MS.gene28724.t1 MTR_2g031590 51.948 539 248 5 2 536 1 532 0.0 543
MS.gene28724.t1 MTR_4g094518 54.191 513 219 8 30 536 28 530 0.0 533
MS.gene28724.t1 MTR_2g031490 50.926 540 252 9 3 536 6 538 2.05e-178 514
MS.gene28724.t1 MTR_4g091150 51.569 510 237 4 31 536 37 540 3.93e-176 508
MS.gene28724.t1 MTR_2g031510 50.195 512 244 6 33 540 40 544 4.76e-172 498
MS.gene28724.t1 MTR_4g057990 49.621 528 256 7 8 535 4 521 3.11e-170 492
MS.gene28724.t1 MTR_6g017205 48.015 529 262 5 10 537 11 527 1.67e-168 488
MS.gene28724.t1 MTR_4g094515 49.254 536 263 5 7 539 624 1153 2.02e-168 508
MS.gene28724.t1 MTR_4g094515 50.394 508 241 7 32 535 39 539 1.35e-166 503
MS.gene28724.t1 MTR_4g091200 47.736 530 263 5 7 535 9 525 2.03e-168 488
MS.gene28724.t1 MTR_4g088355 49.119 511 255 3 32 541 32 538 1.57e-167 486
MS.gene28724.t1 MTR_4g091190 48.728 511 253 5 32 541 31 533 2.18e-164 478
MS.gene28724.t1 MTR_4g091170 46.983 464 222 3 73 535 101 541 1.38e-153 451
MS.gene28724.t1 MTR_2g023590 48.188 469 235 4 68 535 4 465 1.12e-146 430
MS.gene28724.t1 MTR_1g076830 43.867 481 260 7 57 533 58 532 3.14e-126 380
MS.gene28724.t1 MTR_2g031600 58.130 246 101 1 1 246 1 244 2.54e-86 273
MS.gene28724.t1 MTR_2g031600 51.572 159 74 2 378 536 245 400 4.15e-50 177
MS.gene28724.t1 MTR_3g009850 59.130 230 87 5 308 536 5 228 1.02e-84 263
MS.gene28724.t1 MTR_2g084370 48.649 111 35 2 128 238 1 89 2.92e-31 117
MS.gene28724.t1 MTR_2g084405 53.750 80 37 0 128 207 1 80 4.13e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28724.t1 AT5G44400 50.093 539 250 9 10 537 7 537 0.0 526
MS.gene28724.t1 AT4G20820 49.257 538 254 6 2 534 1 524 0.0 524
MS.gene28724.t1 AT5G44440 50.278 539 250 7 2 534 1 527 0.0 522
MS.gene28724.t1 AT5G44440 50.278 539 250 7 2 534 71 597 1.41e-180 521
MS.gene28724.t1 AT2G34790 48.757 523 250 9 21 537 21 531 4.02e-179 515
MS.gene28724.t1 AT5G44410 49.907 537 246 8 4 534 8 527 4.66e-176 508
MS.gene28724.t1 AT5G44390 47.048 542 272 9 3 536 6 540 2.69e-174 503
MS.gene28724.t1 AT5G44360 48.803 543 260 10 1 537 17 547 3.01e-174 503
MS.gene28724.t1 AT5G44360 48.803 543 260 10 1 537 1 531 3.27e-174 503
MS.gene28724.t1 AT1G30760 48.837 516 244 9 27 535 29 531 2.79e-170 493
MS.gene28724.t1 AT1G30760 48.837 516 244 9 27 535 47 549 3.80e-170 493
MS.gene28724.t1 AT5G44380 49.630 540 260 7 2 536 7 539 1.54e-168 488
MS.gene28724.t1 AT5G44380 49.630 540 260 7 2 536 47 579 3.45e-168 489
MS.gene28724.t1 AT4G20860 49.126 515 243 10 30 536 26 529 4.83e-168 487
MS.gene28724.t1 AT1G30730 48.015 529 261 6 8 534 7 523 6.08e-166 481
MS.gene28724.t1 AT1G11770 49.016 508 247 7 32 536 31 529 1.72e-165 481
MS.gene28724.t1 AT1G30700 47.753 534 266 6 8 536 1 526 1.12e-164 478
MS.gene28724.t1 AT1G26420 47.015 536 266 9 4 534 1 523 9.65e-164 476
MS.gene28724.t1 AT1G26380 47.378 534 264 8 11 539 7 528 2.60e-162 473
MS.gene28724.t1 AT4G20840 46.394 513 263 7 31 540 36 539 1.97e-159 465
MS.gene28724.t1 AT1G30720 49.206 504 246 5 33 534 29 524 2.90e-158 462
MS.gene28724.t1 AT1G26400 45.269 539 268 9 4 533 1 521 1.24e-156 457
MS.gene28724.t1 AT1G26410 47.358 511 258 8 26 534 46 547 3.38e-156 457
MS.gene28724.t1 AT1G34575 47.767 515 248 10 30 539 29 527 4.15e-156 456
MS.gene28724.t1 AT1G30710 45.996 537 263 11 8 536 11 528 7.30e-156 456
MS.gene28724.t1 AT4G20800 46.094 512 269 4 23 534 19 523 1.32e-155 455
MS.gene28724.t1 AT1G26390 47.421 504 258 4 32 534 28 525 7.53e-155 453
MS.gene28724.t1 AT4G20830 47.104 518 262 7 26 540 32 540 1.34e-151 445
MS.gene28724.t1 AT1G01980 46.615 517 259 10 31 539 30 537 6.48e-151 444
MS.gene28724.t1 AT4G20830 47.276 514 259 7 26 536 32 536 8.85e-151 444
MS.gene28724.t1 AT1G30740 45.996 537 271 10 12 538 6 533 1.45e-148 437
MS.gene28724.t1 AT1G30740 45.996 537 271 10 12 538 3 530 1.55e-148 437
MS.gene28724.t1 AT2G34810 44.118 510 278 4 31 536 33 539 5.53e-141 418

Find 112 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTGGAGGCCATGATTT+TGG 0.130838 4.3:+19437180 None:intergenic
AAATTATGGCTGTTTGAATA+TGG 0.187785 4.3:+19437207 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4.3:-19435993 MS.gene28724:CDS
CGCCTTTCGGAAATTGAAAA+AGG 0.237346 4.3:+19436433 None:intergenic
AAAACTCCTATTCCTGAAAA+TGG 0.251375 4.3:-19436330 MS.gene28724:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4.3:-19436818 MS.gene28724:CDS
GGTGGTGGAGGAGCAAGTTT+TGG 0.291186 4.3:-19436786 MS.gene28724:CDS
ATATTTCAATCCTTGTTTCT+TGG 0.298323 4.3:-19436558 MS.gene28724:CDS
GTTTCAAAGTCTCCAAGAAT+TGG 0.300797 4.3:-19436072 MS.gene28724:CDS
TTTGCTTTGTAAATAAATCT+TGG 0.313472 4.3:+19436366 None:intergenic
GTTTCCTTATGGTGGAATAA+TGG 0.315442 4.3:-19436247 MS.gene28724:CDS
CCTTTGAAAGACAATATTGA+TGG 0.321417 4.3:+19436620 None:intergenic
AATCAACCTGGTAATGAATA+TGG 0.323880 4.3:+19436172 None:intergenic
ATTCCTGAAAATGGATTAGA+AGG 0.350473 4.3:-19436321 MS.gene28724:CDS
CCCCACTACGGGTTCGAATC+TGG 0.361159 4.3:+19437165 None:intergenic
TAGTTGATATACCCAATTCT+TGG 0.362017 4.3:+19436060 None:intergenic
CATTGATCTCGTAAACTTCA+AGG 0.362548 4.3:-19437093 MS.gene28724:CDS
ATATTCATTACCAGGTTGAT+TGG 0.363341 4.3:-19436170 MS.gene28724:CDS
TACTGGTGAGTAAGAGGAAT+TGG 0.365636 4.3:+19437313 None:intergenic
TTGCTTTGTAAATAAATCTT+GGG 0.367450 4.3:+19436367 None:intergenic
ATTAATTTATTTGTGTCCCT+TGG 0.367735 4.3:+19435864 None:intergenic
AACTATAGAGACCTTGATAT+TGG 0.379359 4.3:-19436042 MS.gene28724:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4.3:-19435956 MS.gene28724:CDS
GGAACCTTAGTGCGTAAATA+TGG 0.383768 4.3:-19436909 MS.gene28724:CDS
CCATATCATCATTGCACCTT+TGG 0.387821 4.3:+19436269 None:intergenic
CTTGGAGACTTTGAAACAAA+AGG 0.388823 4.3:+19436078 None:intergenic
CACTTCAGTGGTGGCGGCTA+TGG 0.388986 4.3:-19436930 MS.gene28724:CDS
ATAGACAAATATGAGCTTAG+AGG 0.392833 4.3:+19437470 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4.3:-19435992 MS.gene28724:CDS
CCAAAGGTGCAATGATGATA+TGG 0.399938 4.3:-19436269 MS.gene28724:CDS
GTAAACACCGTCACAGTTGA+TGG 0.407633 4.3:+19436726 None:intergenic
AGATAAACTCATTCCCTTGA+TGG 0.407746 4.3:-19436529 MS.gene28724:CDS
AATTATGGCTGTTTGAATAT+GGG 0.408415 4.3:+19437208 None:intergenic
TTTCAAAGTCTCCAAGAATT+GGG 0.412921 4.3:-19436071 MS.gene28724:CDS
AAAATGGATTAGAAGGAATA+TGG 0.414702 4.3:-19436314 MS.gene28724:CDS
TTAATTTATTTGTGTCCCTT+GGG 0.415606 4.3:+19435865 None:intergenic
AAAATTGTATTGAAATGAGT+TGG 0.420053 4.3:-19436473 MS.gene28724:CDS
ACTTCAGGTAATGCGCCTTT+CGG 0.422852 4.3:+19436420 None:intergenic
TTTCAATCCTTGTTTCTTGG+AGG 0.424294 4.3:-19436555 MS.gene28724:CDS
ACGAGATCAATGACAACAAA+TGG 0.429670 4.3:+19437104 None:intergenic
GTGATGATGACAAGTGGTTT+AGG 0.431669 4.3:+19437245 None:intergenic
CGAAATCTTGGTTTCCCAGC+TGG 0.436829 4.3:-19436981 MS.gene28724:CDS
ATGATGATATGGTTTCCTTA+TGG 0.438370 4.3:-19436258 MS.gene28724:CDS
CAGCTGGGAAACCAAGATTT+CGG 0.439925 4.3:+19436982 None:intergenic
ATTCCATTTCCTCATAGAAA+AGG 0.440912 4.3:-19436204 MS.gene28724:CDS
GCTGGTGCTTGTCCTACAAT+AGG 0.442267 4.3:-19436963 MS.gene28724:CDS
TGAAATGAGTTGGATTGAAT+CGG 0.452927 4.3:-19436463 MS.gene28724:CDS
GTTCTGTTAAGCAACACTTC+AGG 0.454581 4.3:+19436405 None:intergenic
TTTGAGTACTGGTGAGTAAG+AGG 0.455507 4.3:+19437307 None:intergenic
TGAGTAAGAGGAATTGGTTT+TGG 0.462718 4.3:+19437319 None:intergenic
TCCAGATTCGAACCCGTAGT+GGG 0.475163 4.3:-19437166 MS.gene28724:CDS
TTACCAGGTTGATTGGCAAC+AGG 0.475690 4.3:-19436163 MS.gene28724:CDS
ATAATTTGTTCCCAAAATCA+TGG 0.478899 4.3:-19437191 MS.gene28724:CDS
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4.3:+19435921 None:intergenic
TGTAGAAAGCAAAACTGCTT+GGG 0.483507 4.3:-19437057 MS.gene28724:CDS
TGGTCTTTGTTTCATGAAGA+TGG 0.483871 4.3:-19436294 MS.gene28724:CDS
TGAGTTGTAAATTTGAGTAC+TGG 0.484352 4.3:+19437296 None:intergenic
GAAGAAAAGTTTCCTGAGTT+GGG 0.486919 4.3:-19436507 MS.gene28724:CDS
TGTCCACCAACACCTATTGT+AGG 0.487897 4.3:+19436951 None:intergenic
AAAACTGCTTGGGTTCAGTC+TGG 0.489702 4.3:-19437047 MS.gene28724:CDS
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4.3:-19436798 MS.gene28724:CDS
ATTGGTGTGAATAACATTGA+TGG 0.497447 4.3:-19436024 MS.gene28724:CDS
GTTTACTGTTGCAAAAGCAT+TGG 0.502433 4.3:-19436709 MS.gene28724:CDS
GTATCCATTATTCCACCATA+AGG 0.507512 4.3:+19436243 None:intergenic
ATTGTAGGACAAGCACCAGC+TGG 0.507999 4.3:+19436966 None:intergenic
CTTCCTGTTGCCAATCAACC+TGG 0.513010 4.3:+19436160 None:intergenic
TGCTCACATTATTGATGTGA+AGG 0.514863 4.3:-19436862 MS.gene28724:CDS
TAGACCATATTTACGCACTA+AGG 0.515862 4.3:+19436905 None:intergenic
TGTCCCTTGGGCACAAGAGA+AGG 0.516026 4.3:+19435877 None:intergenic
ATGTAGAAAGCAAAACTGCT+TGG 0.516128 4.3:-19437058 MS.gene28724:CDS
GGAAGAAAAGTTTCCTGAGT+TGG 0.517366 4.3:-19436508 MS.gene28724:CDS
ACATTATTGATGTGAAGGGT+AGG 0.525031 4.3:-19436857 MS.gene28724:CDS
TCTCTAACCACACCCAACTC+AGG 0.530976 4.3:+19436495 None:intergenic
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4.3:-19436835 MS.gene28724:CDS
AATAACTAGAAAGACATTGA+AGG 0.537999 4.3:+19437378 None:intergenic
GTTCAGTCTGGTGCAACACT+TGG 0.538464 4.3:-19437035 MS.gene28724:CDS
TGTTATTCACACCAATATCA+AGG 0.539812 4.3:+19436031 None:intergenic
CTCCAGATTCGAACCCGTAG+TGG 0.540664 4.3:-19437167 MS.gene28724:CDS
TTTATACCATATTCATTACC+AGG 0.548049 4.3:-19436178 MS.gene28724:CDS
CCATCAATATTGTCTTTCAA+AGG 0.551890 4.3:-19436620 MS.gene28724:CDS
AAAGTTTCCTGAGTTGGGTG+TGG 0.552427 4.3:-19436502 MS.gene28724:CDS
TATACCTTCTCTTGTGCCCA+AGG 0.564129 4.3:-19435881 MS.gene28724:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4.3:-19436834 MS.gene28724:CDS
TGTTCACAAGTGGCAGTATG+TGG 0.580228 4.3:-19436667 MS.gene28724:CDS
ATGATATGGTTTCCTTATGG+TGG 0.582909 4.3:-19436255 MS.gene28724:CDS
ATGGCTGTTTGAATATGGGA+AGG 0.583461 4.3:+19437212 None:intergenic
CTACAAAGCTTGTTCACAAG+TGG 0.585250 4.3:-19436677 MS.gene28724:CDS
ATCTACACCTCCAAGAAACA+AGG 0.586811 4.3:+19436548 None:intergenic
AAGTGGTTTAGGTGTTGTGT+AGG 0.592233 4.3:+19437256 None:intergenic
TGTCCTACAATAGGTGTTGG+TGG 0.592774 4.3:-19436954 MS.gene28724:CDS
CCAGATTCGAACCCGTAGTG+GGG 0.593132 4.3:-19437165 MS.gene28724:CDS
GCTTGTCCTACAATAGGTGT+TGG 0.602006 4.3:-19436957 MS.gene28724:CDS
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4.3:-19435991 MS.gene28724:CDS
TTGTAGGACAAGCACCAGCT+GGG 0.603228 4.3:+19436967 None:intergenic
TGAATATGGGAAGGTTCTAG+AGG 0.607797 4.3:+19437221 None:intergenic
CAGGTTGATTGGCAACAGGA+AGG 0.608073 4.3:-19436159 MS.gene28724:CDS
AGGATAGACCCTCAAAGTCA+TGG 0.608222 4.3:+19437141 None:intergenic
CAGATTCGAACCCGTAGTGG+GGG 0.608743 4.3:-19437164 MS.gene28724:CDS
GCAACAGGAAGGTGATGAGG+TGG 0.620727 4.3:-19436148 MS.gene28724:CDS
GCTCACATTATTGATGTGAA+GGG 0.621396 4.3:-19436861 MS.gene28724:CDS
GGTGGACACTTCAGTGGTGG+CGG 0.622668 4.3:-19436936 MS.gene28724:CDS
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4.3:-19436733 MS.gene28724:CDS
TTTCATGAAGATGGTGCCAA+AGG 0.627110 4.3:-19436285 MS.gene28724:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.638376 4.3:-19436939 MS.gene28724:CDS
ATACCTTCTCTTGTGCCCAA+GGG 0.645386 4.3:-19435880 MS.gene28724:CDS
CACTACGGGTTCGAATCTGG+AGG 0.666507 4.3:+19437168 None:intergenic
GGTGTTGGTGGACACTTCAG+TGG 0.668243 4.3:-19436942 MS.gene28724:CDS
AGAGGTGTGATGATGACAAG+TGG 0.700893 4.3:+19437239 None:intergenic
AGCATCGATCACATTATCCG+CGG 0.701535 4.3:+19436881 None:intergenic
AGTGTTGCTTAACAGAACAC+TGG 0.704218 4.3:-19436400 MS.gene28724:CDS
TTGGCAACAGGAAGGTGATG+AGG 0.705230 4.3:-19436151 MS.gene28724:CDS
GCGTAAATATGGTCTAGCCG+CGG 0.716514 4.3:-19436898 MS.gene28724:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAATTTATAATTACA+TGG - chr4.3:19437243-19437262 MS.gene28724:CDS 10.0%
!! AAAATTGTATTGAAATGAGT+TGG - chr4.3:19436873-19436892 MS.gene28724:CDS 20.0%
!! AGGATAAATTCAAGTAAAAA+AGG - chr4.3:19436746-19436765 MS.gene28724:CDS 20.0%
!! TTGCTTTGTAAATAAATCTT+GGG + chr4.3:19436982-19437001 None:intergenic 20.0%
!! TTTGCTTTGTAAATAAATCT+TGG + chr4.3:19436983-19437002 None:intergenic 20.0%
!!! TATAAATTTCCTTTTCTATG+AGG + chr4.3:19437154-19437173 None:intergenic 20.0%
! AAATTATGGCTGTTTGAATA+TGG + chr4.3:19436142-19436161 None:intergenic 25.0%
! AATAACTAGAAAGACATTGA+AGG + chr4.3:19435971-19435990 None:intergenic 25.0%
! AATTATGGCTGTTTGAATAT+GGG + chr4.3:19436141-19436160 None:intergenic 25.0%
! TTTATACCATATTCATTACC+AGG - chr4.3:19437168-19437187 MS.gene28724:CDS 25.0%
!! ATATTTCAATCCTTGTTTCT+TGG - chr4.3:19436788-19436807 MS.gene28724:CDS 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG + chr4.3:19437439-19437458 None:intergenic 25.0%
!!! AAAATGGATTAGAAGGAATA+TGG - chr4.3:19437032-19437051 MS.gene28724:CDS 25.0%
!!! AAATGGAACTTTTGAAACAT+AGG + chr4.3:19436228-19436247 None:intergenic 25.0%
!!! ATAATTTGTTCCCAAAATCA+TGG - chr4.3:19436155-19436174 MS.gene28724:CDS 25.0%
!!! ATGATTTTGGGAACAAATTA+TGG + chr4.3:19436156-19436175 None:intergenic 25.0%
AAAACTCCTATTCCTGAAAA+TGG - chr4.3:19437016-19437035 MS.gene28724:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG + chr4.3:19437428-19437447 None:intergenic 30.0%
AACTATAGAGACCTTGATAT+TGG - chr4.3:19437304-19437323 MS.gene28724:CDS 30.0%
ATAGACAAATATGAGCTTAG+AGG + chr4.3:19435879-19435898 None:intergenic 30.0%
ATGATGATATGGTTTCCTTA+TGG - chr4.3:19437088-19437107 MS.gene28724:CDS 30.0%
ATTCCATTTCCTCATAGAAA+AGG - chr4.3:19437142-19437161 MS.gene28724:CDS 30.0%
ATTGGTGTGAATAACATTGA+TGG - chr4.3:19437322-19437341 MS.gene28724:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.3:19437390-19437409 MS.gene28724:CDS 30.0%
CCATCAATATTGTCTTTCAA+AGG - chr4.3:19436726-19436745 MS.gene28724:CDS 30.0%
TGAGTTGTAAATTTGAGTAC+TGG + chr4.3:19436053-19436072 None:intergenic 30.0%
TGGAAAAACTGCACATTAAT+TGG - chr4.3:19437218-19437237 MS.gene28724:CDS 30.0%
TGTTATTCACACCAATATCA+AGG + chr4.3:19437318-19437337 None:intergenic 30.0%
TTTCAAAGTCTCCAAGAATT+GGG - chr4.3:19437275-19437294 MS.gene28724:CDS 30.0%
! AATCAACCTGGTAATGAATA+TGG + chr4.3:19437177-19437196 None:intergenic 30.0%
! ATTCCTTCTAATCCATTTTC+AGG + chr4.3:19437031-19437050 None:intergenic 30.0%
! CCTTTGAAAGACAATATTGA+TGG + chr4.3:19436729-19436748 None:intergenic 30.0%
! TAGTTGATATACCCAATTCT+TGG + chr4.3:19437289-19437308 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG - chr4.3:19436883-19436902 MS.gene28724:CDS 30.0%
! TTTCCTTTTCTATGAGGAAA+TGG + chr4.3:19437148-19437167 None:intergenic 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG - chr4.3:19436529-19436548 MS.gene28724:CDS 30.0%
!! ATATTCATTACCAGGTTGAT+TGG - chr4.3:19437176-19437195 MS.gene28724:CDS 30.0%
!! ATTCCTGAAAATGGATTAGA+AGG - chr4.3:19437025-19437044 MS.gene28724:CDS 30.0%
!! TCTAATCCATTTTCAGGAAT+AGG + chr4.3:19437025-19437044 None:intergenic 30.0%
!!! GTTTTGGAGTCATAATTTCA+TGG - chr4.3:19436576-19436595 MS.gene28724:CDS 30.0%
!!! TACCTTTTTCAATTTCCGAA+AGG - chr4.3:19436911-19436930 MS.gene28724:CDS 30.0%
ACATTATTGATGTGAAGGGT+AGG - chr4.3:19436489-19436508 MS.gene28724:CDS 35.0%
ACGAGATCAATGACAACAAA+TGG + chr4.3:19436245-19436264 None:intergenic 35.0%
AGATAAACTCATTCCCTTGA+TGG - chr4.3:19436817-19436836 MS.gene28724:CDS 35.0%
ATGATATGGTTTCCTTATGG+TGG - chr4.3:19437091-19437110 MS.gene28724:CDS 35.0%
ATGTAGAAAGCAAAACTGCT+TGG - chr4.3:19436288-19436307 MS.gene28724:CDS 35.0%
CATTGATCTCGTAAACTTCA+AGG - chr4.3:19436253-19436272 MS.gene28724:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG - chr4.3:19437354-19437373 MS.gene28724:CDS 35.0%
GAAGAAAAGTTTCCTGAGTT+GGG - chr4.3:19436839-19436858 MS.gene28724:CDS 35.0%
GCTCACATTATTGATGTGAA+GGG - chr4.3:19436485-19436504 MS.gene28724:CDS 35.0%
GTATCCATTATTCCACCATA+AGG + chr4.3:19437106-19437125 None:intergenic 35.0%
GTTTCAAAGTCTCCAAGAAT+TGG - chr4.3:19437274-19437293 MS.gene28724:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG - chr4.3:19437355-19437374 MS.gene28724:CDS 35.0%
TAGACCATATTTACGCACTA+AGG + chr4.3:19436444-19436463 None:intergenic 35.0%
TGCTCACATTATTGATGTGA+AGG - chr4.3:19436484-19436503 MS.gene28724:CDS 35.0%
TGTAGAAAGCAAAACTGCTT+GGG - chr4.3:19436289-19436308 MS.gene28724:CDS 35.0%
TTTCTTGACAGAGAAGCAAT+GGG - chr4.3:19436512-19436531 MS.gene28724:CDS 35.0%
! AGGAAACTTTTCTTCCATCA+AGG + chr4.3:19436834-19436853 None:intergenic 35.0%
! GGAAACTTTTCTTCCATCAA+GGG + chr4.3:19436833-19436852 None:intergenic 35.0%
! GTTTACTGTTGCAAAAGCAT+TGG - chr4.3:19436637-19436656 MS.gene28724:CDS 35.0%
! GTTTCCTTATGGTGGAATAA+TGG - chr4.3:19437099-19437118 MS.gene28724:CDS 35.0%
! TGGTCTTTGTTTCATGAAGA+TGG - chr4.3:19437052-19437071 MS.gene28724:CDS 35.0%
! TTTCAATCCTTGTTTCTTGG+AGG - chr4.3:19436791-19436810 MS.gene28724:CDS 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG - chr4.3:19436528-19436547 MS.gene28724:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG + chr4.3:19437271-19437290 None:intergenic 35.0%
!! TGAGTAAGAGGAATTGGTTT+TGG + chr4.3:19436030-19436049 None:intergenic 35.0%
!!! AACCAAGATTTCGGCTTTTT+TGG + chr4.3:19436358-19436377 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.3:19436539-19436558 MS.gene28724:CDS 35.0%
AGCCAAAAAAGCCGAAATCT+TGG - chr4.3:19436353-19436372 MS.gene28724:CDS 40.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.3:19436801-19436820 None:intergenic 40.0%
ATGGCTGTTTGAATATGGGA+AGG + chr4.3:19436137-19436156 None:intergenic 40.0%
CCATATCATCATTGCACCTT+TGG + chr4.3:19437080-19437099 None:intergenic 40.0%
CGCCTTTCGGAAATTGAAAA+AGG + chr4.3:19436916-19436935 None:intergenic 40.0%
GCTACAAGCAAGCTAGTATT+TGG - chr4.3:19437353-19437372 MS.gene28724:CDS 40.0%
GGAACCTTAGTGCGTAAATA+TGG - chr4.3:19436437-19436456 MS.gene28724:CDS 40.0%
GGAAGAAAAGTTTCCTGAGT+TGG - chr4.3:19436838-19436857 MS.gene28724:CDS 40.0%
GTTCTGTTAAGCAACACTTC+AGG + chr4.3:19436944-19436963 None:intergenic 40.0%
GTTTCTTGACAGAGAAGCAA+TGG - chr4.3:19436511-19436530 MS.gene28724:CDS 40.0%
TACTGGTGAGTAAGAGGAAT+TGG + chr4.3:19436036-19436055 None:intergenic 40.0%
TCAAGTTCCATCAACTGTGA+CGG - chr4.3:19436613-19436632 MS.gene28724:CDS 40.0%
! AAGTGGTTTAGGTGTTGTGT+AGG + chr4.3:19436093-19436112 None:intergenic 40.0%
! AATCTGGAGGCCATGATTTT+GGG + chr4.3:19436168-19436187 None:intergenic 40.0%
! CCAAAGGTGCAATGATGATA+TGG - chr4.3:19437077-19437096 MS.gene28724:CDS 40.0%
! CTACAAAGCTTGTTCACAAG+TGG - chr4.3:19436669-19436688 MS.gene28724:CDS 40.0%
! GTGATGATGACAAGTGGTTT+AGG + chr4.3:19436104-19436123 None:intergenic 40.0%
! TGAATATGGGAAGGTTCTAG+AGG + chr4.3:19436128-19436147 None:intergenic 40.0%
! TTTCATGAAGATGGTGCCAA+AGG - chr4.3:19437061-19437080 MS.gene28724:CDS 40.0%
!! AGTGTTGCTTAACAGAACAC+TGG - chr4.3:19436946-19436965 MS.gene28724:CDS 40.0%
!! TTTGAGTACTGGTGAGTAAG+AGG + chr4.3:19436042-19436061 None:intergenic 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.3:19436542-19436561 MS.gene28724:CDS 40.0%
AAAACTGCTTGGGTTCAGTC+TGG - chr4.3:19436299-19436318 MS.gene28724:CDS 45.0%
ACTTCAGGTAATGCGCCTTT+CGG + chr4.3:19436929-19436948 None:intergenic 45.0%
AGGATAGACCCTCAAAGTCA+TGG + chr4.3:19436208-19436227 None:intergenic 45.0%
ATACCTTCTCTTGTGCCCAA+GGG - chr4.3:19437466-19437485 MS.gene28724:CDS 45.0%
CAGCTGGGAAACCAAGATTT+CGG + chr4.3:19436367-19436386 None:intergenic 45.0%
GCTTGTCCTACAATAGGTGT+TGG - chr4.3:19436389-19436408 MS.gene28724:CDS 45.0%
GTAAACACCGTCACAGTTGA+TGG + chr4.3:19436623-19436642 None:intergenic 45.0%
TATACCTTCTCTTGTGCCCA+AGG - chr4.3:19437465-19437484 MS.gene28724:CDS 45.0%
TGTCCACCAACACCTATTGT+AGG + chr4.3:19436398-19436417 None:intergenic 45.0%
TGTTCACAAGTGGCAGTATG+TGG - chr4.3:19436679-19436698 MS.gene28724:CDS 45.0%
! AAAGTTTCCTGAGTTGGGTG+TGG - chr4.3:19436844-19436863 MS.gene28724:CDS 45.0%
! AGAGGTGTGATGATGACAAG+TGG + chr4.3:19436110-19436129 None:intergenic 45.0%
! GAATCTGGAGGCCATGATTT+TGG + chr4.3:19436169-19436188 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.3:19436545-19436564 MS.gene28724:CDS 45.0%
!! AGCATCGATCACATTATCCG+CGG + chr4.3:19436468-19436487 None:intergenic 45.0%
!! TGTCCTACAATAGGTGTTGG+TGG - chr4.3:19436392-19436411 MS.gene28724:CDS 45.0%
!! TTACCAGGTTGATTGGCAAC+AGG - chr4.3:19437183-19437202 MS.gene28724:CDS 45.0%
ATTGTAGGACAAGCACCAGC+TGG + chr4.3:19436383-19436402 None:intergenic 50.0%
CGAAATCTTGGTTTCCCAGC+TGG - chr4.3:19436365-19436384 MS.gene28724:CDS 50.0%
CTTCCTGTTGCCAATCAACC+TGG + chr4.3:19437189-19437208 None:intergenic 50.0%
GCGTAAATATGGTCTAGCCG+CGG - chr4.3:19436448-19436467 MS.gene28724:CDS 50.0%
GCTGGTGCTTGTCCTACAAT+AGG - chr4.3:19436383-19436402 MS.gene28724:CDS 50.0%
GTTCAGTCTGGTGCAACACT+TGG - chr4.3:19436311-19436330 MS.gene28724:CDS 50.0%
TCCAGATTCGAACCCGTAGT+GGG - chr4.3:19436180-19436199 MS.gene28724:CDS 50.0%
TCTCTAACCACACCCAACTC+AGG + chr4.3:19436854-19436873 None:intergenic 50.0%
TTGGCAACAGGAAGGTGATG+AGG - chr4.3:19437195-19437214 MS.gene28724:CDS 50.0%
TTGTAGGACAAGCACCAGCT+GGG + chr4.3:19436382-19436401 None:intergenic 50.0%
!! CAGGTTGATTGGCAACAGGA+AGG - chr4.3:19437187-19437206 MS.gene28724:CDS 50.0%
AAAGTCATGGCCCCCACTAC+GGG + chr4.3:19436195-19436214 None:intergenic 55.0%
AGTGGGGGCCATGACTTTGA+GGG - chr4.3:19436197-19436216 MS.gene28724:CDS 55.0%
CAAAGTCATGGCCCCCACTA+CGG + chr4.3:19436196-19436215 None:intergenic 55.0%
CACTACGGGTTCGAATCTGG+AGG + chr4.3:19436181-19436200 None:intergenic 55.0%
CAGATTCGAACCCGTAGTGG+GGG - chr4.3:19436182-19436201 MS.gene28724:CDS 55.0%
CCAGATTCGAACCCGTAGTG+GGG - chr4.3:19436181-19436200 MS.gene28724:CDS 55.0%
CTCCAGATTCGAACCCGTAG+TGG - chr4.3:19436179-19436198 MS.gene28724:CDS 55.0%
GCAACAGGAAGGTGATGAGG+TGG - chr4.3:19437198-19437217 MS.gene28724:CDS 55.0%
TAGTGGGGGCCATGACTTTG+AGG - chr4.3:19436196-19436215 MS.gene28724:CDS 55.0%
TGTCCCTTGGGCACAAGAGA+AGG + chr4.3:19437472-19437491 None:intergenic 55.0%
! GTTGGTGGACACTTCAGTGG+TGG - chr4.3:19436407-19436426 MS.gene28724:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG - chr4.3:19436548-19436567 MS.gene28724:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG - chr4.3:19436404-19436423 MS.gene28724:CDS 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG - chr4.3:19436560-19436579 MS.gene28724:CDS 55.0%
CCCCACTACGGGTTCGAATC+TGG + chr4.3:19436184-19436203 None:intergenic 60.0%
GGTGGACACTTCAGTGGTGG+CGG - chr4.3:19436410-19436429 MS.gene28724:CDS 60.0%
!! CACTTCAGTGGTGGCGGCTA+TGG - chr4.3:19436416-19436435 MS.gene28724:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 19435870 19437498 19435870 ID=MS.gene28724
chr4.3 mRNA 19435870 19437498 19435870 ID=MS.gene28724.t1;Parent=MS.gene28724
chr4.3 exon 19435870 19437498 19435870 ID=MS.gene28724.t1.exon1;Parent=MS.gene28724.t1
chr4.3 CDS 19435870 19437498 19435870 ID=cds.MS.gene28724.t1;Parent=MS.gene28724.t1
Gene Sequence

>MS.gene28724

ATGATGCCTCTAAGCTCATATTTGTCTATTGCACTTATTGCTATTTTATTTTCATATGCATCTTCTGCAATTGATACTAATACTAATGAAGATAACTTCCTTCAATGTCTTTCTAGTTATTCACATAACTCAACTTCAATCTCTAAAGTTGTGTACACCAAAACCAATTCCTCTTACTCACCAGTACTCAAATTTACAACTCAAAATCTAAGATTTGCATCCTACACAACACCTAAACCACTTGTCATCATCACACCTCTAGAACCTTCCCATATTCAAACAGCCATAATTTGTTCCCAAAATCATGGCCTCCAGATTCGAACCCGTAGTGGGGGCCATGACTTTGAGGGTCTATCCTATGTTTCAAAAGTTCCATTTGTTGTCATTGATCTCGTAAACTTCAAGGAAATTGATGTAGATGTAGAAAGCAAAACTGCTTGGGTTCAGTCTGGTGCAACACTTGGTGAACTTTACTACACAATTAGCCAAAAAAGCCGAAATCTTGGTTTCCCAGCTGGTGCTTGTCCTACAATAGGTGTTGGTGGACACTTCAGTGGTGGCGGCTATGGAACCTTAGTGCGTAAATATGGTCTAGCCGCGGATAATGTGATCGATGCTCACATTATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTGCAAAAGCATTGGAGCAAAATGCTACAAAGCTTGTTCACAAGTGGCAGTATGTGGCAAGTAAAATTGATGAAAACATAGCCATCAATATTGTCTTTCAAAGGATAAATTCAAGTAAAAAAGGTGAGACAACAATTCTAGCTATATTTCAATCCTTGTTTCTTGGAGGTGTAGATAAACTCATTCCCTTGATGGAAGAAAAGTTTCCTGAGTTGGGTGTGGTTAGAGAAAATTGTATTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCAATTTCCGAAAGGCGCATTACCTGAAGTGTTGCTTAACAGAACACTGGCTGCAAACAGCCCAAGATTTATTTACAAAGCAAAATCTGATTTTGTGAAAACTCCTATTCCTGAAAATGGATTAGAAGGAATATGGTCTTTGTTTCATGAAGATGGTGCCAAAGGTGCAATGATGATATGGTTTCCTTATGGTGGAATAATGGATACTATTTCAGAGTCTGAAATTCCATTTCCTCATAGAAAAGGAAATTTATACCATATTCATTACCAGGTTGATTGGCAACAGGAAGGTGATGAGGTGGAAAAACTGCACATTAATTGGATTAGAAAAATTTATAATTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAATTGGGTATATCAACTATAGAGACCTTGATATTGGTGTGAATAACATTGATGGTTACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAGAGTATACCTTCTCTTGTGCCCAAGGGACACAAATAA

Protein sequence

>MS.gene28724.t1

MMPLSSYLSIALIAILFSYASSAIDTNTNEDNFLQCLSSYSHNSTSISKVVYTKTNSSYSPVLKFTTQNLRFASYTTPKPLVIITPLEPSHIQTAIICSQNHGLQIRTRSGGHDFEGLSYVSKVPFVVIDLVNFKEIDVDVESKTAWVQSGATLGELYYTISQKSRNLGFPAGACPTIGVGGHFSGGGYGTLVRKYGLAADNVIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSTVTVFTVAKALEQNATKLVHKWQYVASKIDENIAINIVFQRINSSKKGETTILAIFQSLFLGGVDKLIPLMEEKFPELGVVRENCIEMSWIESVLYLFQFPKGALPEVLLNRTLAANSPRFIYKAKSDFVKTPIPENGLEGIWSLFHEDGAKGAMMIWFPYGGIMDTISESEIPFPHRKGNLYHIHYQVDWQQEGDEVEKLHINWIRKIYNYMEPFVSKSPRIGYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSLVPKGHK