AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072378


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072378.t1 MTR_7g092750 97.842 417 6 1 1 414 48 464 0.0 846
MS.gene072378.t1 MTR_7g092750 91.607 417 6 2 1 414 48 438 0.0 781
MS.gene072378.t1 MTR_7g092750 97.521 363 6 1 55 414 1 363 0.0 738
MS.gene072378.t1 MTR_0126s0080 72.944 377 79 6 13 366 83 459 0.0 550
MS.gene072378.t1 MTR_7g089800 59.810 316 114 5 102 413 117 423 9.95e-129 378
MS.gene072378.t1 MTR_8g040120 52.591 386 157 8 35 412 98 465 1.11e-128 379
MS.gene072378.t1 MTR_7g089800 61.111 306 106 5 112 413 156 452 3.82e-128 377
MS.gene072378.t1 MTR_2g086420 55.932 295 116 2 119 413 188 468 3.74e-116 348
MS.gene072378.t1 MTR_2g086420 55.932 295 116 2 119 413 189 469 4.54e-116 348
MS.gene072378.t1 MTR_4g053250 54.072 307 120 4 107 413 176 461 5.05e-110 332
MS.gene072378.t1 MTR_5g054900 51.456 309 140 3 108 413 52 353 1.75e-107 321
MS.gene072378.t1 MTR_5g054900 51.456 309 140 3 108 413 133 434 1.47e-106 322
MS.gene072378.t1 MTR_3g087940 49.686 318 153 2 96 413 51 361 1.89e-104 313
MS.gene072378.t1 MTR_5g054900 50.809 309 138 4 108 413 52 349 3.97e-104 312
MS.gene072378.t1 MTR_5g054900 50.809 309 138 4 108 413 163 460 1.22e-102 312
MS.gene072378.t1 MTR_1g111310 48.910 321 152 4 94 413 398 707 4.27e-97 305
MS.gene072378.t1 MTR_1g111310 48.571 315 142 5 94 407 31 326 2.10e-88 283
MS.gene072378.t1 MTR_5g060950 44.444 342 175 4 70 410 19 346 1.01e-88 273
MS.gene072378.t1 MTR_8g091650 45.425 306 159 3 108 413 59 356 5.85e-87 268
MS.gene072378.t1 MTR_8g091650 47.387 287 143 3 127 413 5 283 3.44e-86 264
MS.gene072378.t1 MTR_8g091650 47.241 290 145 3 124 413 111 392 5.28e-85 265
MS.gene072378.t1 MTR_3g073560 44.248 339 169 6 76 411 24 345 9.85e-81 260
MS.gene072378.t1 MTR_3g044820 49.123 171 79 3 119 283 40 208 2.10e-53 177
MS.gene072378.t1 MTR_1g090370 30.392 204 115 6 208 406 47 228 2.67e-20 89.4
MS.gene072378.t1 MTR_1g111320 55.263 76 26 1 103 178 133 200 2.42e-16 78.2
MS.gene072378.t1 MTR_7g068860 25.561 223 142 4 196 403 6 219 5.48e-14 71.6
MS.gene072378.t1 MTR_2g076140 23.232 198 144 2 203 395 8 202 2.62e-12 66.2
MS.gene072378.t1 MTR_8g094690 21.849 238 155 4 194 400 10 247 3.90e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072378.t1 AT5G06839 59.955 442 134 11 12 414 22 459 5.76e-177 502
MS.gene072378.t1 AT5G06839 60.333 421 123 9 12 414 22 416 2.16e-174 493
MS.gene072378.t1 AT5G06839 59.953 422 124 9 12 414 22 417 1.76e-173 491
MS.gene072378.t1 AT1G08320 53.736 348 133 8 66 413 10 329 7.31e-124 363
MS.gene072378.t1 AT1G08320 53.736 348 133 8 66 413 10 329 7.31e-124 363
MS.gene072378.t1 AT1G08320 45.414 447 169 11 14 413 35 453 6.61e-122 362
MS.gene072378.t1 AT1G08320 45.414 447 169 11 14 413 35 453 6.61e-122 362
MS.gene072378.t1 AT1G08320 45.414 447 169 11 14 413 35 453 6.61e-122 362
MS.gene072378.t1 AT5G06950 53.746 307 133 2 109 413 31 330 2.16e-114 338
MS.gene072378.t1 AT5G06950 53.746 307 133 2 109 413 31 330 2.16e-114 338
MS.gene072378.t1 AT5G06950 53.746 307 133 2 109 413 31 330 2.16e-114 338
MS.gene072378.t1 AT5G06950 53.746 307 133 2 109 413 31 330 2.16e-114 338
MS.gene072378.t1 AT5G06950 53.746 307 133 2 109 413 31 330 2.16e-114 338
MS.gene072378.t1 AT3G12250 52.229 314 141 2 102 413 24 330 7.21e-114 337
MS.gene072378.t1 AT3G12250 52.229 314 141 2 102 413 24 330 7.21e-114 337
MS.gene072378.t1 AT3G12250 52.229 314 141 2 102 413 24 330 7.21e-114 337
MS.gene072378.t1 AT3G12250 52.229 314 141 2 102 413 24 330 7.21e-114 337
MS.gene072378.t1 AT3G12250 52.229 314 141 2 102 413 18 324 2.59e-113 335
MS.gene072378.t1 AT3G12250 51.212 330 149 4 86 413 36 355 3.43e-113 335
MS.gene072378.t1 AT3G12250 52.922 308 136 2 108 413 3 303 9.03e-113 333
MS.gene072378.t1 AT5G06960 55.102 294 123 2 122 413 44 330 3.41e-109 325
MS.gene072378.t1 AT5G06960 55.102 294 123 2 122 413 44 330 3.41e-109 325
MS.gene072378.t1 AT5G06960 55.102 294 123 2 122 413 24 310 4.00e-109 323
MS.gene072378.t1 AT1G68640 52.941 306 137 3 109 412 151 451 3.63e-105 318
MS.gene072378.t1 AT1G77920 49.836 305 137 2 109 413 78 366 3.96e-99 300
MS.gene072378.t1 AT5G10030 50.169 295 139 3 119 413 76 362 9.04e-99 299
MS.gene072378.t1 AT5G10030 50.169 295 139 3 119 413 76 362 9.04e-99 299
MS.gene072378.t1 AT5G10030 50.169 295 139 3 119 413 76 362 9.04e-99 299
MS.gene072378.t1 AT5G10030 50.169 295 139 3 119 413 76 362 9.04e-99 299
MS.gene072378.t1 AT5G10030 50.169 295 139 3 119 413 76 362 9.04e-99 299
MS.gene072378.t1 AT1G22070 51.299 308 138 5 109 413 84 382 3.21e-98 298
MS.gene072378.t1 AT5G65210 48.845 303 142 4 111 413 7 296 5.32e-96 290
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT5G65210 47.003 317 157 4 100 413 58 366 2.12e-95 291
MS.gene072378.t1 AT1G58330 27.273 231 139 5 192 403 3 223 8.29e-17 79.7

Find 90 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATATTTCATCTTGTTTC+TGG 0.146768 7.4:+16050822 MS.gene072378:CDS
GTCCATTAAGATAGAGAAAA+AGG 0.218834 7.4:-16048777 None:intergenic
TAAACCTTCTGAACTCATTA+AGG 0.258020 7.4:+16050893 MS.gene072378:CDS
CAACAAATAATGGGCATATA+TGG 0.268804 7.4:+16051796 MS.gene072378:CDS
AATGTTTGTGGACAAATTCT+TGG 0.284617 7.4:+16050752 MS.gene072378:CDS
GTCCATGTAGTTGGTCATAT+TGG 0.290454 7.4:-16051926 None:intergenic
AGCTTATGATTTGGGTGAAT+TGG 0.294739 7.4:+16048747 MS.gene072378:CDS
ATTGACCGAGCAACAAATAA+TGG 0.298535 7.4:+16051786 MS.gene072378:CDS
GATTCGGGAGCTTATGATTT+GGG 0.302566 7.4:+16048739 MS.gene072378:CDS
TGTACGTGCCTTAACAGCTT+TGG 0.332582 7.4:-16049655 None:intergenic
CACATGAAGCAACGTTCAAT+TGG 0.341843 7.4:-16050858 None:intergenic
TCCATGTAGTTGGTCATATT+GGG 0.346409 7.4:-16051925 None:intergenic
TATTAATTACACCTTAGAAT+TGG 0.350406 7.4:-16049486 None:intergenic
GTACGTGCCTTAACAGCTTT+GGG 0.362416 7.4:-16049654 None:intergenic
TGTTCATGGCCCTTGCCATT+TGG 0.365190 7.4:-16051948 None:intergenic
GCCATCATCGTCCAATTCTA+AGG 0.366357 7.4:+16049475 MS.gene072378:CDS
GGGTGGCTCTGATCCTCTCT+TGG 0.372781 7.4:-16049634 None:intergenic
TGCCATTTGGTCCATGTAGT+TGG 0.373834 7.4:-16051935 None:intergenic
TTCATCTTGTTTCTGGCATG+TGG 0.389553 7.4:+16050829 MS.gene072378:CDS
TTTGGTGGAGGTGCAATGTT+GGG 0.390194 7.4:+16050502 MS.gene072378:CDS
AGATTCGGGAGCTTATGATT+TGG 0.391428 7.4:+16048738 MS.gene072378:CDS
TTGCTGATTGACGCGTCGTT+AGG 0.394258 7.4:-16054432 None:intergenic
AAGAGTGGAGAGTTTGTTCA+TGG 0.395292 7.4:-16051962 None:intergenic
ACATGAAGCAACGTTCAATT+GGG 0.406516 7.4:-16050857 None:intergenic
ATTATTTGTTGCTCGGTCAA+TGG 0.410343 7.4:-16051784 None:intergenic
GTCAGCAGAAATAAAGATTC+GGG 0.416098 7.4:+16048724 MS.gene072378:intron
TCTTCATCACCCTCTGTCCT+TGG 0.418587 7.4:+16048572 MS.gene072378:CDS
CTCTTGGATCCACTTGTTTG+CGG 0.419959 7.4:-16049618 None:intergenic
AGAGATCACACCTGAGCTAA+TGG 0.429073 7.4:-16050554 None:intergenic
GAGCTAATGGTATTCATAGA+AGG 0.438872 7.4:-16050541 None:intergenic
TGTCAGCAGAAATAAAGATT+CGG 0.439709 7.4:+16048723 MS.gene072378:intron
TATGCCCATTATTTGTTGCT+CGG 0.446315 7.4:-16051791 None:intergenic
CTTTGGTGGAGGTGCAATGT+TGG 0.447414 7.4:+16050501 MS.gene072378:CDS
GACCAACTACATGGACCAAA+TGG 0.454379 7.4:+16051933 MS.gene072378:CDS
TTGACCGAGCAACAAATAAT+GGG 0.460762 7.4:+16051787 MS.gene072378:CDS
TAGGGCATGTTCTTTGGTGG+AGG 0.462298 7.4:+16050490 MS.gene072378:intron
GATCTGATTCAGACGATGAA+TGG 0.463347 7.4:-16054410 None:intergenic
TCATGTTCAGAACTTGAAGT+TGG 0.464502 7.4:-16049930 None:intergenic
AAAGAGTTAACCTTAGGATC+TGG 0.468362 7.4:-16049966 None:intergenic
TCCACAGAAAATTCAACATC+AGG 0.468688 7.4:+16049401 MS.gene072378:intron
TAAACTTAATCAGATGGAAC+AGG 0.470502 7.4:+16050363 MS.gene072378:CDS
CTCTTAGTTCACATACTAAA+CGG 0.475671 7.4:-16050692 None:intergenic
CGTTGCTTCATGTGGATTGG+TGG 0.475727 7.4:+16050867 MS.gene072378:CDS
GAATGAGCTTAGAATGTTTG+TGG 0.479362 7.4:+16050740 MS.gene072378:CDS
ACCTTAGAATTGGACGATGA+TGG 0.485367 7.4:-16049476 None:intergenic
AACATTCTAAGCTCATTCTC+AGG 0.491670 7.4:-16050735 None:intergenic
ACCTAAAACACCAGATCCTA+AGG 0.513193 7.4:+16049956 MS.gene072378:CDS
CAATTGAACGTTGCTTCATG+TGG 0.518218 7.4:+16050859 MS.gene072378:CDS
TCATCTTGTTTCTGGCATGT+GGG 0.519428 7.4:+16050830 MS.gene072378:CDS
CAGAATTAAACTTAATCAGA+TGG 0.528140 7.4:+16050357 MS.gene072378:CDS
GAACGTTGCTTCATGTGGAT+TGG 0.530260 7.4:+16050864 MS.gene072378:CDS
GATTCAGACGATGAATGGTT+TGG 0.540713 7.4:-16054405 None:intergenic
TTTGGTCTTGAACACTGGAT+GGG 0.540777 7.4:-16048807 None:intergenic
GCTACCTTAATGAGTTCAGA+AGG 0.549582 7.4:-16050897 None:intergenic
TCCCAATATGACCAACTACA+TGG 0.555270 7.4:+16051924 MS.gene072378:CDS
GAACTCACATGTAGTTTCCA+AGG 0.555892 7.4:-16048589 None:intergenic
GGAGAAGATGCTCTCTCTCA+AGG 0.558918 7.4:+16051841 MS.gene072378:CDS
TGCTCTCTCTCAAGGACTTG+AGG 0.560629 7.4:+16051849 MS.gene072378:CDS
AAAATTCAACATCAGGAATG+AGG 0.564641 7.4:+16049408 MS.gene072378:CDS
AACTCAATGCTCGCATACGA+TGG 0.565611 7.4:-16054483 None:intergenic
TCTACATGCATAGGCTGAGA+AGG 0.566999 7.4:-16049452 None:intergenic
TCTATGAATACCATTAGCTC+AGG 0.570910 7.4:+16050544 MS.gene072378:CDS
TCTTGAAAGTTTCGTGAGAG+AGG 0.574448 7.4:+16051981 MS.gene072378:CDS
GCAATGTTGGGAGGAGAACA+AGG 0.577141 7.4:+16050514 MS.gene072378:CDS
GGAATATGCGAGGTGGCTTG+AGG 0.581832 7.4:+16050662 MS.gene072378:CDS
TTAGTTTCTCCGCAAACAAG+TGG 0.585262 7.4:+16049609 MS.gene072378:CDS
GATGATGGCTCTACATGCAT+AGG 0.601506 7.4:-16049461 None:intergenic
GGTGGAGGTGCAATGTTGGG+AGG 0.609507 7.4:+16050505 MS.gene072378:CDS
TCTCACGAAACTTTCAAGAG+TGG 0.621714 7.4:-16051977 None:intergenic
GCGAGCATTGAGTTCTCTGT+GGG 0.622812 7.4:+16054492 MS.gene072378:CDS
TAATGGTATTCATAGAAGGA+AGG 0.626256 7.4:-16050537 None:intergenic
ACTACATGGACCAAATGGCA+AGG 0.628760 7.4:+16051938 MS.gene072378:CDS
ATGTAGTTTCCAAGGACAGA+GGG 0.634416 7.4:-16048581 None:intergenic
CATGAAGCAACGTTCAATTG+GGG 0.638346 7.4:-16050856 None:intergenic
ATGTAGTTGGTCATATTGGG+AGG 0.641383 7.4:-16051922 None:intergenic
TAACGACGCGTCAATCAGCA+AGG 0.644344 7.4:+16054434 MS.gene072378:CDS
CAAACAAGTGGATCCAAGAG+AGG 0.644811 7.4:+16049621 MS.gene072378:CDS
CGTGCCTTAACAGCTTTGGG+TGG 0.648085 7.4:-16049651 None:intergenic
AGCATTGAGTTCTCTGTGGG+TGG 0.652494 7.4:+16054495 MS.gene072378:CDS
ACGATGGAAGTACTCAGCCA+TGG 0.660105 7.4:-16054467 None:intergenic
ACTTCAAGTTCTGAACATGA+AGG 0.660838 7.4:+16049933 MS.gene072378:CDS
TGCGAGCATTGAGTTCTCTG+TGG 0.661165 7.4:+16054491 MS.gene072378:CDS
CATGTAGTTTCCAAGGACAG+AGG 0.674553 7.4:-16048582 None:intergenic
CTACATGGACCAAATGGCAA+GGG 0.682858 7.4:+16051939 MS.gene072378:CDS
TTGCAACAATCTACACAACA+AGG 0.684828 7.4:+16051820 MS.gene072378:CDS
TGTTCGACGTGGAATATGCG+AGG 0.686245 7.4:+16050652 MS.gene072378:CDS
AGAGGCTGCAATGTTCGACG+TGG 0.690011 7.4:+16050641 MS.gene072378:intron
ACTGAATGCTATTCTTGACG+CGG 0.733529 7.4:-16054523 None:intergenic
TCGACGTGGAATATGCGAGG+TGG 0.738111 7.4:+16050655 MS.gene072378:CDS
TTAGTTCACATACTAAACGG+TGG 0.740777 7.4:-16050689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTAATTATTTTAT+AGG + chr7.4:16049575-16049594 MS.gene072378:intron 0.0%
!! ATTTCAAATATTTATATAAG+AGG - chr7.4:16050612-16050631 None:intergenic 10.0%
!! TAAACTATTAATTAACATAT+TGG - chr7.4:16049698-16049717 None:intergenic 10.0%
!!! TATATATTTTTTAAAGTGAT+TGG + chr7.4:16052527-16052546 MS.gene072378:intron 10.0%
!!! TTACTTTTTTTTATTCTTTT+TGG + chr7.4:16050066-16050085 MS.gene072378:intron 10.0%
!! ATCATTATCATTAGTATATA+TGG - chr7.4:16053500-16053519 None:intergenic 15.0%
!! ATTTCTTAATCAATGTTATA+AGG - chr7.4:16051313-16051332 None:intergenic 15.0%
!! CAAGAATAATAAATAGTTAT+AGG - chr7.4:16053903-16053922 None:intergenic 15.0%
!! CTTATTGTTAATGAAATTAT+GGG + chr7.4:16051405-16051424 MS.gene072378:intron 15.0%
!! GTTTAAAAAAAGAAAATAAC+CGG + chr7.4:16054338-16054357 MS.gene072378:intron 15.0%
!! TCAAAAAAATAATAAGAGTT+TGG + chr7.4:16049758-16049777 MS.gene072378:intron 15.0%
!!! AAAATTTTGTTTGTTAACTA+TGG + chr7.4:16053246-16053265 MS.gene072378:intron 15.0%
!!! AAATTTTGTTTGTTAACTAT+GGG + chr7.4:16053247-16053266 MS.gene072378:intron 15.0%
!!! AATTTTCTTTGTGAAATTTA+TGG + chr7.4:16053063-16053082 MS.gene072378:intron 15.0%
!!! ATTTTTTTTTAGATGACAAA+AGG - chr7.4:16052119-16052138 None:intergenic 15.0%
!!! TCTTTCTTTTTTCTAAAAAA+GGG + chr7.4:16049076-16049095 MS.gene072378:intron 15.0%
!!! TGTATATATTAGTGATTTTT+AGG + chr7.4:16052214-16052233 MS.gene072378:intron 15.0%
!!! TTATTGTTATTTCCATTTTA+GGG + chr7.4:16050472-16050491 MS.gene072378:intron 15.0%
!!! TTCTTTCTTTTTTCTAAAAA+AGG + chr7.4:16049075-16049094 MS.gene072378:intron 15.0%
!!! TTTATTATTCTTGTTTTCAA+AGG + chr7.4:16053910-16053929 MS.gene072378:intron 15.0%
!!! TTTATTGTTATTTCCATTTT+AGG + chr7.4:16050471-16050490 MS.gene072378:intron 15.0%
!!! TTTTTTACATTTTTTGTCAA+TGG + chr7.4:16050261-16050280 MS.gene072378:intron 15.0%
!! AAAAAAATCACACTATATTG+TGG - chr7.4:16053109-16053128 None:intergenic 20.0%
!! AAACAAGAAAAATATCTTCA+TGG + chr7.4:16050415-16050434 MS.gene072378:intron 20.0%
!! AAATAATAGTATTTGCGAAT+AGG + chr7.4:16052047-16052066 MS.gene072378:intron 20.0%
!! AAATGATAGAATGAATAAAG+AGG - chr7.4:16049276-16049295 None:intergenic 20.0%
!! AAGAAACAATTATAAGAGTT+TGG + chr7.4:16049731-16049750 MS.gene072378:intron 20.0%
!! AATGATAGAATGAATAAAGA+GGG - chr7.4:16049275-16049294 None:intergenic 20.0%
!! AGAAACATAAAAATCACATT+TGG - chr7.4:16051725-16051744 None:intergenic 20.0%
!! ATAAAATGTGGATATGAAAT+GGG - chr7.4:16050038-16050057 None:intergenic 20.0%
!! ATTCATAAACTTTGTATTGT+CGG + chr7.4:16051146-16051165 MS.gene072378:intron 20.0%
!! CAAATTAACACATATGATAT+TGG - chr7.4:16053315-16053334 None:intergenic 20.0%
!! CATATAGATATTGTTAATCA+TGG + chr7.4:16052170-16052189 MS.gene072378:intron 20.0%
!! CCATAATTTCATTAACAATA+AGG - chr7.4:16051407-16051426 None:intergenic 20.0%
!! CCTTATTGTTAATGAAATTA+TGG + chr7.4:16051404-16051423 MS.gene072378:intron 20.0%
!! GTTATAGATAACCAAAATTT+CGG + chr7.4:16053837-16053856 MS.gene072378:intron 20.0%
!! TAAAAAACACAACACAAATA+TGG - chr7.4:16050248-16050267 None:intergenic 20.0%
!! TAGAAGAAAACAAAATGATA+TGG - chr7.4:16052967-16052986 None:intergenic 20.0%
!! TAGATTCAAAGATGTATAAT+TGG - chr7.4:16053417-16053436 None:intergenic 20.0%
!! TATTAATTACACCTTAGAAT+TGG - chr7.4:16049489-16049508 None:intergenic 20.0%
!! TGATTAAACATGCATTATAA+GGG - chr7.4:16050583-16050602 None:intergenic 20.0%
!! TGTTAAATAATGTTAAGTCA+TGG - chr7.4:16050964-16050983 None:intergenic 20.0%
!! TTAATCAATGTTATAAGGTA+TGG - chr7.4:16051308-16051327 None:intergenic 20.0%
!! TTCAATACTAATACTATAAG+CGG - chr7.4:16051548-16051567 None:intergenic 20.0%
!! TTCATTAACAATTCTTGAAA+TGG + chr7.4:16053275-16053294 MS.gene072378:intron 20.0%
!! TTGATTAAACATGCATTATA+AGG - chr7.4:16050584-16050603 None:intergenic 20.0%
!! TTGTTGAATTCAATGTTATA+AGG + chr7.4:16051632-16051651 MS.gene072378:intron 20.0%
!! TTTGTTACACTTCATATTAA+TGG + chr7.4:16049551-16049570 MS.gene072378:intron 20.0%
!!! AAAAAAAAAACTCACGTTTT+TGG - chr7.4:16048828-16048847 None:intergenic 20.0%
!!! AAATTTTGTATATTTGCTTG+TGG - chr7.4:16053233-16053252 None:intergenic 20.0%
!!! AATTTTGTATATTTGCTTGT+GGG - chr7.4:16053232-16053251 None:intergenic 20.0%
!!! ATAATTTTTATGCGAAGAAT+AGG + chr7.4:16051068-16051087 MS.gene072378:intron 20.0%
!!! ATATCATTTTGTTTTCTTCT+AGG + chr7.4:16052966-16052985 MS.gene072378:intron 20.0%
!!! ATTTGAAATGAATATTTCAG+AGG + chr7.4:16050623-16050642 MS.gene072378:intron 20.0%
!!! ATTTTGACTAAAAGTACAAA+CGG + chr7.4:16052861-16052880 MS.gene072378:intron 20.0%
!!! TAATTTTTATGCGAAGAATA+GGG + chr7.4:16051069-16051088 MS.gene072378:intron 20.0%
!!! TATATTAGTGATTTTTAGGA+TGG + chr7.4:16052218-16052237 MS.gene072378:intron 20.0%
!!! TATTTTTTTAGACGATTCAA+CGG + chr7.4:16054284-16054303 MS.gene072378:intron 20.0%
!!! TTTTATTTGTACTCTTTTTC+AGG + chr7.4:16050309-16050328 MS.gene072378:intron 20.0%
! AAATATTTACAAGAGAAGAG+AGG + chr7.4:16049169-16049188 MS.gene072378:intron 25.0%
! AACTAACTTAAAGAGATAGA+TGG - chr7.4:16052422-16052441 None:intergenic 25.0%
! AAGATTAAAGAGTTAACCTT+AGG - chr7.4:16049975-16049994 None:intergenic 25.0%
! AAGCTAGAGGAATATTAATT+AGG + chr7.4:16053470-16053489 MS.gene072378:intron 25.0%
! AATTTCAAGCAAAACGTTAT+TGG - chr7.4:16048863-16048882 None:intergenic 25.0%
! ATATAGACATTGATAGAAGT+CGG - chr7.4:16053366-16053385 None:intergenic 25.0%
! ATCAATGTCTATATTAGTAG+CGG + chr7.4:16053372-16053391 MS.gene072378:intron 25.0%
! ATTTCAAGCAAAACGTTATT+GGG - chr7.4:16048862-16048881 None:intergenic 25.0%
! CAGAATTAAACTTAATCAGA+TGG + chr7.4:16050357-16050376 MS.gene072378:CDS 25.0%
! CTATTTAATGTTGCTGAATT+TGG + chr7.4:16049364-16049383 MS.gene072378:intron 25.0%
! GATAAAATGTGGATATGAAA+TGG - chr7.4:16050039-16050058 None:intergenic 25.0%
! GTAACAAGATTGATAAAATG+TGG - chr7.4:16050050-16050069 None:intergenic 25.0%
! TAAAATGTGGATATGAAATG+GGG - chr7.4:16050037-16050056 None:intergenic 25.0%
! TAACGTTATAGTCATTCAAA+AGG + chr7.4:16051104-16051123 MS.gene072378:intron 25.0%
! TAGTTATAGGAACATGATAT+AGG - chr7.4:16053890-16053909 None:intergenic 25.0%
! TATAACAAACCAAAAGTGAA+AGG - chr7.4:16048905-16048924 None:intergenic 25.0%
! TCAATACTAATACTATAAGC+GGG - chr7.4:16051547-16051566 None:intergenic 25.0%
! TCAATTCAAATCACAATTAC+CGG - chr7.4:16054360-16054379 None:intergenic 25.0%
! TCCATTAAGATAGAGAAAAA+GGG - chr7.4:16048779-16048798 None:intergenic 25.0%
! TGTCTTACGTTAAGAAAAAT+TGG + chr7.4:16048665-16048684 MS.gene072378:intron 25.0%
! TTAATTAGGATTGTATCAGT+GGG - chr7.4:16052739-16052758 None:intergenic 25.0%
! TTAGTATGAACAGTATTATC+TGG - chr7.4:16054310-16054329 None:intergenic 25.0%
! TTCACATTGATGAATTTCTA+AGG + chr7.4:16052659-16052678 MS.gene072378:intron 25.0%
! TTGCAATATTAGTTGAACTT+TGG + chr7.4:16051034-16051053 MS.gene072378:intron 25.0%
! TTGCTTGAAATTCAAAAAGA+AGG + chr7.4:16048871-16048890 MS.gene072378:intron 25.0%
! TTTAATTAGGATTGTATCAG+TGG - chr7.4:16052740-16052759 None:intergenic 25.0%
!! ATCTCTTTAAGTTAGTTACA+TGG + chr7.4:16052425-16052444 MS.gene072378:intron 25.0%
!! CTCATGTCTAATATGATTTT+TGG + chr7.4:16052897-16052916 MS.gene072378:intron 25.0%
!! GATATATTTCATCTTGTTTC+TGG + chr7.4:16050822-16050841 MS.gene072378:CDS 25.0%
!! GCAAGATTTTTGAATCAAAT+TGG + chr7.4:16052941-16052960 MS.gene072378:intron 25.0%
!! TAGGTTTTCTTAGTCAAATT+TGG - chr7.4:16053871-16053890 None:intergenic 25.0%
!! TGAAGATTTTCCATATTGTA+CGG + chr7.4:16051255-16051274 MS.gene072378:intron 25.0%
!!! AATTATTTTATAGGCTAGCA+TGG + chr7.4:16049584-16049603 MS.gene072378:intron 25.0%
!!! AGGGATAGTATCTTTTAATT+AGG - chr7.4:16052753-16052772 None:intergenic 25.0%
!!! ATCAAAATATCGACTGATTT+TGG + chr7.4:16052990-16053009 MS.gene072378:intron 25.0%
!!! GCTCTTCTTTTTTATTTCTT+TGG - chr7.4:16051184-16051203 None:intergenic 25.0%
!!! TTGAATTAAGTTGAAAGCAA+TGG + chr7.4:16053029-16053048 MS.gene072378:intron 25.0%
AAAATTCAACATCAGGAATG+AGG + chr7.4:16049408-16049427 MS.gene072378:CDS 30.0%
AACTTAAAGAGATAGATGGA+TGG - chr7.4:16052418-16052437 None:intergenic 30.0%
AATAAGGTTTCCTAGCTATA+AGG + chr7.4:16052602-16052621 MS.gene072378:intron 30.0%
AATGTTTGTGGACAAATTCT+TGG + chr7.4:16050752-16050771 MS.gene072378:CDS 30.0%
AATTCTTGAAATGGTAACCT+AGG + chr7.4:16053284-16053303 MS.gene072378:intron 30.0%
ACAATGTATATGTTTGTGTG+TGG - chr7.4:16054062-16054081 None:intergenic 30.0%
ACACTATTCTAAGTAACCAA+AGG + chr7.4:16050923-16050942 MS.gene072378:intron 30.0%
ACTACAATAGAAAAGAGAGA+TGG - chr7.4:16051453-16051472 None:intergenic 30.0%
ATAAACTTTGTATTGTCGGT+GGG + chr7.4:16051150-16051169 MS.gene072378:intron 30.0%
ATAGCTAGGAAACCTTATTA+TGG - chr7.4:16052601-16052620 None:intergenic 30.0%
ATCTATTGTAAGTAACCGAT+CGG + chr7.4:16053432-16053451 MS.gene072378:intron 30.0%
ATGAAAACTTTGTCAAGTCA+TGG - chr7.4:16052303-16052322 None:intergenic 30.0%
ATTATGTGTACTTATCCTCT+AGG + chr7.4:16054113-16054132 MS.gene072378:intron 30.0%
CAAGGACAAATACTACAAAT+TGG - chr7.4:16053580-16053599 None:intergenic 30.0%
CACGTGAAAGTTAATATTAG+TGG + chr7.4:16052712-16052731 MS.gene072378:intron 30.0%
CATGTCAAATAGTCAAAGTA+AGG - chr7.4:16052014-16052033 None:intergenic 30.0%
CTACAATAGAAAAGAGAGAT+GGG - chr7.4:16051452-16051471 None:intergenic 30.0%
CTATAGTATAGTAAACGCAT+AGG - chr7.4:16049883-16049902 None:intergenic 30.0%
CTCTTAGTTCACATACTAAA+CGG - chr7.4:16050695-16050714 None:intergenic 30.0%
GTAACCTAAAATGCAATAAC+TGG + chr7.4:16050437-16050456 MS.gene072378:intron 30.0%
GTCCATTAAGATAGAGAAAA+AGG - chr7.4:16048780-16048799 None:intergenic 30.0%
GTGATTTGAATTGAACTTAC+AGG + chr7.4:16054366-16054385 MS.gene072378:intron 30.0%
GTTATAAGGAGAACTATAAG+TGG + chr7.4:16051646-16051665 MS.gene072378:intron 30.0%
TAAACCTTCTGAACTCATTA+AGG + chr7.4:16050893-16050912 MS.gene072378:CDS 30.0%
TAAACTTAATCAGATGGAAC+AGG + chr7.4:16050363-16050382 MS.gene072378:CDS 30.0%
TAACACATATGATATTGGTG+AGG - chr7.4:16053310-16053329 None:intergenic 30.0%
TAATGGTATTCATAGAAGGA+AGG - chr7.4:16050540-16050559 None:intergenic 30.0%
TGTCAGCAGAAATAAAGATT+CGG + chr7.4:16048723-16048742 MS.gene072378:intron 30.0%
TTAATCATGGACGTTGAATT+TGG + chr7.4:16052183-16052202 MS.gene072378:intron 30.0%
TTATGTGTACTTATCCTCTA+GGG + chr7.4:16054114-16054133 MS.gene072378:intron 30.0%
TTTGTAGTATTTGTCCTTGT+TGG + chr7.4:16053581-16053600 MS.gene072378:intron 30.0%
! AACCAAAAGTGTGGAAAAAA+TGG + chr7.4:16049024-16049043 MS.gene072378:intron 30.0%
! ATGTCCAGTTATTGCATTTT+AGG - chr7.4:16050444-16050463 None:intergenic 30.0%
! TGAGTCAACTCTATATTTTG+CGG - chr7.4:16054244-16054263 None:intergenic 30.0%
!! AAAGAGGGTCTATTTTTCAA+AGG - chr7.4:16049260-16049279 None:intergenic 30.0%
!! ACGATTTTTCAAAGTACGTA+AGG - chr7.4:16053780-16053799 None:intergenic 30.0%
!! AGTTTTCATAACTGATTTCG+TGG + chr7.4:16052314-16052333 MS.gene072378:intron 30.0%
!! ATAGCAAAGGTACCATAATA+AGG + chr7.4:16052586-16052605 MS.gene072378:intron 30.0%
!! CAACAAATAATGGGCATATA+TGG + chr7.4:16051796-16051815 MS.gene072378:CDS 30.0%
!! CGATTTTTCAAAGTACGTAA+GGG - chr7.4:16053779-16053798 None:intergenic 30.0%
!! CTTGTTTTCAAAGGTAGAAA+GGG + chr7.4:16053919-16053938 MS.gene072378:intron 30.0%
!! GATTTTTCAAAGTACGTAAG+GGG - chr7.4:16053778-16053797 None:intergenic 30.0%
!! GTTTTCATAACTGATTTCGT+GGG + chr7.4:16052315-16052334 MS.gene072378:intron 30.0%
!! TTTTCATAACTGATTTCGTG+GGG + chr7.4:16052316-16052335 MS.gene072378:intron 30.0%
!!! ATCATGGTTGATTAGTTTTG+TGG + chr7.4:16052263-16052282 MS.gene072378:intron 30.0%
!!! TCTTGTTTTCAAAGGTAGAA+AGG + chr7.4:16053918-16053937 MS.gene072378:intron 30.0%
!!! TTCCATTTTTTCCACACTTT+TGG - chr7.4:16049029-16049048 None:intergenic 30.0%
AAAAAGCAGGCTTAGGAAAA+AGG + chr7.4:16050188-16050207 MS.gene072378:CDS 35.0%
AAAAAGGATGTTATGGGGAA+GGG - chr7.4:16052839-16052858 None:intergenic 35.0%
AAACGTTATTGGGATTTGGA+AGG - chr7.4:16048852-16048871 None:intergenic 35.0%
AAAGAGTTAACCTTAGGATC+TGG - chr7.4:16049969-16049988 None:intergenic 35.0%
AACATTCTAAGCTCATTCTC+AGG - chr7.4:16050738-16050757 None:intergenic 35.0%
AAGAAGAATCTGTTGTCCTT+GGG + chr7.4:16052354-16052373 MS.gene072378:intron 35.0%
ACATGAAGCAACGTTCAATT+GGG - chr7.4:16050860-16050879 None:intergenic 35.0%
ACCATGACATCACATAGATA+TGG - chr7.4:16052782-16052801 None:intergenic 35.0%
AGCAAAACAAACCAAAAGTG+TGG + chr7.4:16049015-16049034 MS.gene072378:intron 35.0%
AGCAAAACGTTATTGGGATT+TGG - chr7.4:16048856-16048875 None:intergenic 35.0%
AGGCTTAGGAAAAAGGTAAA+TGG + chr7.4:16050195-16050214 MS.gene072378:intron 35.0%
AGTATAGTAAACGCATAGGT+AGG - chr7.4:16049879-16049898 None:intergenic 35.0%
ATACTATAAGCGGGAAAGTA+TGG - chr7.4:16051538-16051557 None:intergenic 35.0%
ATCCTCATAACCTTATAGCT+AGG - chr7.4:16052615-16052634 None:intergenic 35.0%
ATGTATATGTTTGTGTGTGG+AGG - chr7.4:16054059-16054078 None:intergenic 35.0%
ATTGACCGAGCAACAAATAA+TGG + chr7.4:16051786-16051805 MS.gene072378:CDS 35.0%
CAAATTGGTCAAACTATGAC+TGG - chr7.4:16053565-16053584 None:intergenic 35.0%
CACTAGCACTTCAACATATA+AGG - chr7.4:16053818-16053837 None:intergenic 35.0%
CAGTTGAATCTACAAGCAAA+AGG + chr7.4:16054017-16054036 MS.gene072378:intron 35.0%
CATAAACTTTGTATTGTCGG+TGG + chr7.4:16051149-16051168 MS.gene072378:intron 35.0%
CATGACATCACATAGATATG+GGG - chr7.4:16052780-16052799 None:intergenic 35.0%
CCATGACATCACATAGATAT+GGG - chr7.4:16052781-16052800 None:intergenic 35.0%
GAAGGAAAAATGTTGAGAGT+TGG - chr7.4:16049437-16049456 None:intergenic 35.0%
GAATGAGCTTAGAATGTTTG+TGG + chr7.4:16050740-16050759 MS.gene072378:CDS 35.0%
GAGAGTTAGTTAGTACACAT+AGG + chr7.4:16052553-16052572 MS.gene072378:intron 35.0%
GAGCTAATGGTATTCATAGA+AGG - chr7.4:16050544-16050563 None:intergenic 35.0%
GCATAGGTAGGTGATTAATT+AGG - chr7.4:16049867-16049886 None:intergenic 35.0%
GTCAGCAGAAATAAAGATTC+GGG + chr7.4:16048724-16048743 MS.gene072378:intron 35.0%
TAAACTTTGTATTGTCGGTG+GGG + chr7.4:16051151-16051170 MS.gene072378:intron 35.0%
TAAAGAGATAGATGGATGGA+AGG - chr7.4:16052414-16052433 None:intergenic 35.0%
TCATGTTCAGAACTTGAAGT+TGG - chr7.4:16049933-16049952 None:intergenic 35.0%
TCCACAGAAAATTCAACATC+AGG + chr7.4:16049401-16049420 MS.gene072378:intron 35.0%
TCCATGTAGTTGGTCATATT+GGG - chr7.4:16051928-16051947 None:intergenic 35.0%
TCTATGAATACCATTAGCTC+AGG + chr7.4:16050544-16050563 MS.gene072378:CDS 35.0%
TGATCAAGTCAAATTGTGGT+TGG + chr7.4:16054147-16054166 MS.gene072378:intron 35.0%
TTAGTTCACATACTAAACGG+TGG - chr7.4:16050692-16050711 None:intergenic 35.0%
TTATCGATCACTGTAGTGAT+AGG + chr7.4:16054189-16054208 MS.gene072378:intron 35.0%
TTCCTAGCTATAAGGTTATG+AGG + chr7.4:16052610-16052629 MS.gene072378:intron 35.0%
TTGAATCTACAAGCAAAAGG+TGG + chr7.4:16054020-16054039 MS.gene072378:intron 35.0%
TTGACCGAGCAACAAATAAT+GGG + chr7.4:16051787-16051806 MS.gene072378:CDS 35.0%
TTGCAACAATCTACACAACA+AGG + chr7.4:16051820-16051839 MS.gene072378:CDS 35.0%
! AGCTTATGATTTGGGTGAAT+TGG + chr7.4:16048747-16048766 MS.gene072378:CDS 35.0%
! ATTATTTGTTGCTCGGTCAA+TGG - chr7.4:16051787-16051806 None:intergenic 35.0%
! GACTCTTTTCCTTTCACTTT+TGG + chr7.4:16048893-16048912 MS.gene072378:intron 35.0%
! GCCCTTTTTCTCTATCTTAA+TGG + chr7.4:16048775-16048794 MS.gene072378:CDS 35.0%
! TATGCCCATTATTTGTTGCT+CGG - chr7.4:16051794-16051813 None:intergenic 35.0%
! TCCTGATGTTGAATTTTCTG+TGG - chr7.4:16049405-16049424 None:intergenic 35.0%
! TGGAACGTTAACCGAAATTT+TGG - chr7.4:16053851-16053870 None:intergenic 35.0%
! TTTCATAACTGATTTCGTGG+GGG + chr7.4:16052317-16052336 MS.gene072378:intron 35.0%
! TTTTATGCGAAGAATAGGGA+GGG + chr7.4:16051073-16051092 MS.gene072378:intron 35.0%
! TTTTTATGCGAAGAATAGGG+AGG + chr7.4:16051072-16051091 MS.gene072378:intron 35.0%
!! AACCACAATTTGACTTGATC+AGG - chr7.4:16054148-16054167 None:intergenic 35.0%
!! ACCACAATTTGACTTGATCA+GGG - chr7.4:16054147-16054166 None:intergenic 35.0%
!! ACTTCAAGTTCTGAACATGA+AGG + chr7.4:16049933-16049952 MS.gene072378:CDS 35.0%
!! TGTTTTGCTTTTCTGCAGAA+AGG - chr7.4:16049004-16049023 None:intergenic 35.0%
AAGTAACCGATCGGAACAAT+GGG + chr7.4:16053441-16053460 MS.gene072378:intron 40.0%
ACCTAAAACACCAGATCCTA+AGG + chr7.4:16049956-16049975 MS.gene072378:CDS 40.0%
ACCTTAGAATTGGACGATGA+TGG - chr7.4:16049479-16049498 None:intergenic 40.0%
AGACACAGACAAAAAGAGGT+TGG - chr7.4:16053973-16053992 None:intergenic 40.0%
AGATTCGGGAGCTTATGATT+TGG + chr7.4:16048738-16048757 MS.gene072378:CDS 40.0%
AGTGCTGTCTTCAAGTCAAA+CGG - chr7.4:16052810-16052829 None:intergenic 40.0%
ATATGATATTGGTGAGGCCT+AGG - chr7.4:16053304-16053323 None:intergenic 40.0%
ATGTAGTTGGTCATATTGGG+AGG - chr7.4:16051925-16051944 None:intergenic 40.0%
ATGTAGTTTCCAAGGACAGA+GGG - chr7.4:16048584-16048603 None:intergenic 40.0%
CAAAAAGGATGTTATGGGGA+AGG - chr7.4:16052840-16052859 None:intergenic 40.0%
CAATGGGAAACAAAAGCTAG+AGG + chr7.4:16053457-16053476 MS.gene072378:intron 40.0%
CAATTGAACGTTGCTTCATG+TGG + chr7.4:16050859-16050878 MS.gene072378:CDS 40.0%
CACATGAAGCAACGTTCAAT+TGG - chr7.4:16050861-16050880 None:intergenic 40.0%
CATGAAGCAACGTTCAATTG+GGG - chr7.4:16050859-16050878 None:intergenic 40.0%
CCAAAGAACATGCCCTAAAA+TGG - chr7.4:16050487-16050506 None:intergenic 40.0%
CCATATTGTACGGTAGAGTT+AGG + chr7.4:16051265-16051284 MS.gene072378:intron 40.0%
CCCATATCTATGTGATGTCA+TGG + chr7.4:16052778-16052797 MS.gene072378:intron 40.0%
CCTAACTCTACCGTACAATA+TGG - chr7.4:16051268-16051287 None:intergenic 40.0%
CGAGAGAAAAATCATGGCAA+GGG + chr7.4:16049906-16049925 MS.gene072378:CDS 40.0%
GAACTCACATGTAGTTTCCA+AGG - chr7.4:16048592-16048611 None:intergenic 40.0%
GAAGAAGAATCTGTTGTCCT+TGG + chr7.4:16052353-16052372 MS.gene072378:intron 40.0%
GATCTGATTCAGACGATGAA+TGG - chr7.4:16054413-16054432 None:intergenic 40.0%
GATTCAGACGATGAATGGTT+TGG - chr7.4:16054408-16054427 None:intergenic 40.0%
GATTCGGGAGCTTATGATTT+GGG + chr7.4:16048739-16048758 MS.gene072378:CDS 40.0%
GATTCTGCTGAACATGCTAT+TGG - chr7.4:16048948-16048967 None:intergenic 40.0%
GCAAAGACACAGACAAAAAG+AGG - chr7.4:16053977-16053996 None:intergenic 40.0%
GCATGAATGACATGAACCTT+TGG - chr7.4:16050942-16050961 None:intergenic 40.0%
GCGACATGCTATCTATATCA+TGG + chr7.4:16052247-16052266 MS.gene072378:intron 40.0%
GCTACCTTAATGAGTTCAGA+AGG - chr7.4:16050900-16050919 None:intergenic 40.0%
GGAAAAATGTTGAGAGTTGG+TGG - chr7.4:16049434-16049453 None:intergenic 40.0%
GTCCATGTAGTTGGTCATAT+TGG - chr7.4:16051929-16051948 None:intergenic 40.0%
GTGTGACTAAAAGTCCAACA+AGG - chr7.4:16053598-16053617 None:intergenic 40.0%
TAAGTAACCGATCGGAACAA+TGG + chr7.4:16053440-16053459 MS.gene072378:intron 40.0%
TAGCAGCGAGAGAAAAATCA+TGG + chr7.4:16049900-16049919 MS.gene072378:intron 40.0%
TCACACTATATTGTGGTAGC+TGG - chr7.4:16053102-16053121 None:intergenic 40.0%
TCCCAATATGACCAACTACA+TGG + chr7.4:16051924-16051943 MS.gene072378:CDS 40.0%
TCCCTGATCAAGTCAAATTG+TGG + chr7.4:16054143-16054162 MS.gene072378:intron 40.0%
TCTCACGAAACTTTCAAGAG+TGG - chr7.4:16051980-16051999 None:intergenic 40.0%
TCTTGAAAGTTTCGTGAGAG+AGG + chr7.4:16051981-16052000 MS.gene072378:CDS 40.0%
TTAGTTTCTCCGCAAACAAG+TGG + chr7.4:16049609-16049628 MS.gene072378:CDS 40.0%
TTGTTTCCCATTGTTCCGAT+CGG - chr7.4:16053450-16053469 None:intergenic 40.0%
! AAGAGTGGAGAGTTTGTTCA+TGG - chr7.4:16051965-16051984 None:intergenic 40.0%
! ACCTTAGGATCTGGTGTTTT+AGG - chr7.4:16049960-16049979 None:intergenic 40.0%
! AGAAGTCGGTGAACAACTTT+TGG - chr7.4:16053352-16053371 None:intergenic 40.0%
! AGGCGTAAAAAGCATAGCAA+AGG + chr7.4:16052573-16052592 MS.gene072378:intron 40.0%
! GTTTTGTGGTCCCTCTATAA+GGG + chr7.4:16052277-16052296 MS.gene072378:intron 40.0%
!! AGTTTTGTGGTCCCTCTATA+AGG + chr7.4:16052276-16052295 MS.gene072378:intron 40.0%
!! CAATTTGACTTGATCAGGGA+TGG - chr7.4:16054143-16054162 None:intergenic 40.0%
!! TCATCTTGTTTCTGGCATGT+GGG + chr7.4:16050830-16050849 MS.gene072378:CDS 40.0%
!! TTCATCTTGTTTCTGGCATG+TGG + chr7.4:16050829-16050848 MS.gene072378:CDS 40.0%
!! TTTGGTCTTGAACACTGGAT+GGG - chr7.4:16048810-16048829 None:intergenic 40.0%
!!! ACGTTTTTGGTCTTGAACAC+TGG - chr7.4:16048815-16048834 None:intergenic 40.0%
!!! CCATTTTAGGGCATGTTCTT+TGG + chr7.4:16050484-16050503 MS.gene072378:intron 40.0%
!!! TTTTAGGGCATGTTCTTTGG+TGG + chr7.4:16050487-16050506 MS.gene072378:intron 40.0%
!!! TTTTGGTCTTGAACACTGGA+TGG - chr7.4:16048811-16048830 None:intergenic 40.0%
AACTCAATGCTCGCATACGA+TGG - chr7.4:16054486-16054505 None:intergenic 45.0%
ACTACATGGACCAAATGGCA+AGG + chr7.4:16051938-16051957 MS.gene072378:CDS 45.0%
AGAATCTGTTGTCCTTGGGT+AGG + chr7.4:16052358-16052377 MS.gene072378:intron 45.0%
AGAGATCACACCTGAGCTAA+TGG - chr7.4:16050557-16050576 None:intergenic 45.0%
AGCAGAATCATATCTGCAGC+AGG + chr7.4:16048959-16048978 MS.gene072378:intron 45.0%
CAAACAAGTGGATCCAAGAG+AGG + chr7.4:16049621-16049640 MS.gene072378:CDS 45.0%
CAAGTCATGGCCCTTATAGA+GGG - chr7.4:16052290-16052309 None:intergenic 45.0%
CACATAGATATGGGGCTAGA+GGG - chr7.4:16052772-16052791 None:intergenic 45.0%
CAGCTAGAAAAAGCAGGCTT+AGG + chr7.4:16050181-16050200 MS.gene072378:CDS 45.0%
CATGCTTTGTGACTTACGAG+AGG - chr7.4:16051496-16051515 None:intergenic 45.0%
CATGTAGTTTCCAAGGACAG+AGG - chr7.4:16048585-16048604 None:intergenic 45.0%
CGATCACTGTAGTGATAGGA+AGG + chr7.4:16054193-16054212 MS.gene072378:intron 45.0%
CTACATGGACCAAATGGCAA+GGG + chr7.4:16051939-16051958 MS.gene072378:CDS 45.0%
CTCTCGTAAGTCACAAAGCA+TGG + chr7.4:16051494-16051513 MS.gene072378:intron 45.0%
CTCTTGGATCCACTTGTTTG+CGG - chr7.4:16049621-16049640 None:intergenic 45.0%
GAACGTTGCTTCATGTGGAT+TGG + chr7.4:16050864-16050883 MS.gene072378:CDS 45.0%
GAATCTGTTGTCCTTGGGTA+GGG + chr7.4:16052359-16052378 MS.gene072378:intron 45.0%
GACCAACTACATGGACCAAA+TGG + chr7.4:16051933-16051952 MS.gene072378:CDS 45.0%
GAGAAGCAGCTAGAAAAAGC+AGG + chr7.4:16050175-16050194 MS.gene072378:CDS 45.0%
GATGGAAGGAGTAGTTCATG+GGG - chr7.4:16052400-16052419 None:intergenic 45.0%
GCAGAATCATATCTGCAGCA+GGG + chr7.4:16048960-16048979 MS.gene072378:intron 45.0%
GCCATCATCGTCCAATTCTA+AGG + chr7.4:16049475-16049494 MS.gene072378:CDS 45.0%
GCGAGAGAAAAATCATGGCA+AGG + chr7.4:16049905-16049924 MS.gene072378:intron 45.0%
GGATGGAAGGAGTAGTTCAT+GGG - chr7.4:16052401-16052420 None:intergenic 45.0%
GTACGTGCCTTAACAGCTTT+GGG - chr7.4:16049657-16049676 None:intergenic 45.0%
TCAAGTCATGGCCCTTATAG+AGG - chr7.4:16052291-16052310 None:intergenic 45.0%
TCACATAGATATGGGGCTAG+AGG - chr7.4:16052773-16052792 None:intergenic 45.0%
TCTACATGCATAGGCTGAGA+AGG - chr7.4:16049455-16049474 None:intergenic 45.0%
TGCAGAAAGGATCTGGTCAA+AGG - chr7.4:16048991-16049010 None:intergenic 45.0%
TGGATGGAAGGAGTAGTTCA+TGG - chr7.4:16052402-16052421 None:intergenic 45.0%
TGTACGTGCCTTAACAGCTT+TGG - chr7.4:16049658-16049677 None:intergenic 45.0%
! GATGATGGCTCTACATGCAT+AGG - chr7.4:16049464-16049483 None:intergenic 45.0%
! GCTTTTCTGCAGAAAGGATC+TGG - chr7.4:16048998-16049017 None:intergenic 45.0%
! TGCCATTTGGTCCATGTAGT+TGG - chr7.4:16051938-16051957 None:intergenic 45.0%
! TTTGGTGGAGGTGCAATGTT+GGG + chr7.4:16050502-16050521 MS.gene072378:CDS 45.0%
!! AGCAAGGTGTTTTCTTGCCA+TGG + chr7.4:16054450-16054469 MS.gene072378:CDS 45.0%
!! CTATATATTAATTAAAAATA+AGG + chr7.4:16053741-16053760 MS.gene072378:intron 5.0%
AGAGCCACCCAAAGCTGTTA+AGG + chr7.4:16049647-16049666 MS.gene072378:intron 50.0%
AGTTCATGGGGTTGTGTGGT+AGG - chr7.4:16052388-16052407 None:intergenic 50.0%
ATCAGGGATGGAAACCCTAG+AGG - chr7.4:16054131-16054150 None:intergenic 50.0%
GAGTAGTTCATGGGGTTGTG+TGG - chr7.4:16052392-16052411 None:intergenic 50.0%
GCAATGTTGGGAGGAGAACA+AGG + chr7.4:16050514-16050533 MS.gene072378:CDS 50.0%
GCGAAGAATAGGGAGGGAAA+TGG + chr7.4:16051079-16051098 MS.gene072378:intron 50.0%
GGAGAAGATGCTCTCTCTCA+AGG + chr7.4:16051841-16051860 MS.gene072378:CDS 50.0%
TAACGACGCGTCAATCAGCA+AGG + chr7.4:16054434-16054453 MS.gene072378:CDS 50.0%
TAGGGCATGTTCTTTGGTGG+AGG + chr7.4:16050490-16050509 MS.gene072378:intron 50.0%
TCTTCATCACCCTCTGTCCT+TGG + chr7.4:16048572-16048591 MS.gene072378:CDS 50.0%
TGCTCTCTCTCAAGGACTTG+AGG + chr7.4:16051849-16051868 MS.gene072378:CDS 50.0%
TGTTCATGGCCCTTGCCATT+TGG - chr7.4:16051951-16051970 None:intergenic 50.0%
TGTTCGACGTGGAATATGCG+AGG + chr7.4:16050652-16050671 MS.gene072378:CDS 50.0%
! AGCATTGAGTTCTCTGTGGG+TGG + chr7.4:16054495-16054514 MS.gene072378:CDS 50.0%
! CTTTGGTGGAGGTGCAATGT+TGG + chr7.4:16050501-16050520 MS.gene072378:CDS 50.0%
! TTGCTGATTGACGCGTCGTT+AGG - chr7.4:16054435-16054454 None:intergenic 50.0%
!! ACGATGGAAGTACTCAGCCA+TGG - chr7.4:16054470-16054489 None:intergenic 50.0%
!! CGTTGCTTCATGTGGATTGG+TGG + chr7.4:16050867-16050886 MS.gene072378:CDS 50.0%
!! GATTTCGTGGGGGTACTACT+GGG + chr7.4:16052327-16052346 MS.gene072378:intron 50.0%
!! GCGAGCATTGAGTTCTCTGT+GGG + chr7.4:16054492-16054511 MS.gene072378:CDS 50.0%
!! TGATTTCGTGGGGGTACTAC+TGG + chr7.4:16052326-16052345 MS.gene072378:intron 50.0%
!! TGCGAGCATTGAGTTCTCTG+TGG + chr7.4:16054491-16054510 MS.gene072378:CDS 50.0%
AGAGGCTGCAATGTTCGACG+TGG + chr7.4:16050641-16050660 MS.gene072378:intron 55.0%
GGAATATGCGAGGTGGCTTG+AGG + chr7.4:16050662-16050681 MS.gene072378:CDS 55.0%
GTGGTAGGTTTCCCTACCCA+AGG - chr7.4:16052373-16052392 None:intergenic 55.0%
TCGACGTGGAATATGCGAGG+TGG + chr7.4:16050655-16050674 MS.gene072378:CDS 55.0%
!! CGTGCCTTAACAGCTTTGGG+TGG - chr7.4:16049654-16049673 None:intergenic 55.0%
! GGTGGAGGTGCAATGTTGGG+AGG + chr7.4:16050505-16050524 MS.gene072378:CDS 60.0%
!! GGGTGGCTCTGATCCTCTCT+TGG - chr7.4:16049637-16049656 None:intergenic 60.0%
!! TCGTGGGGGTACTACTGGGT+AGG + chr7.4:16052331-16052350 MS.gene072378:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 16048560 16054537 16048560 ID=MS.gene072378
chr7.4 mRNA 16048560 16054537 16048560 ID=MS.gene072378.t1;Parent=MS.gene072378
chr7.4 exon 16048560 16048603 16048560 ID=MS.gene072378.t1.exon1;Parent=MS.gene072378.t1
chr7.4 CDS 16048560 16048603 16048560 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16048732 16048832 16048732 ID=MS.gene072378.t1.exon2;Parent=MS.gene072378.t1
chr7.4 CDS 16048732 16048832 16048732 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16049408 16049496 16049408 ID=MS.gene072378.t1.exon3;Parent=MS.gene072378.t1
chr7.4 CDS 16049408 16049496 16049408 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16049597 16049662 16049597 ID=MS.gene072378.t1.exon4;Parent=MS.gene072378.t1
chr7.4 CDS 16049597 16049662 16049597 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16049906 16049977 16049906 ID=MS.gene072378.t1.exon5;Parent=MS.gene072378.t1
chr7.4 CDS 16049906 16049977 16049906 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16050150 16050209 16050150 ID=MS.gene072378.t1.exon6;Parent=MS.gene072378.t1
chr7.4 CDS 16050150 16050209 16050150 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16050331 16050408 16050331 ID=MS.gene072378.t1.exon7;Parent=MS.gene072378.t1
chr7.4 CDS 16050331 16050408 16050331 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16050493 16050565 16050493 ID=MS.gene072378.t1.exon8;Parent=MS.gene072378.t1
chr7.4 CDS 16050493 16050565 16050493 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16050643 16050914 16050643 ID=MS.gene072378.t1.exon9;Parent=MS.gene072378.t1
chr7.4 CDS 16050643 16050914 16050643 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16051763 16052002 16051763 ID=MS.gene072378.t1.exon10;Parent=MS.gene072378.t1
chr7.4 CDS 16051763 16052002 16051763 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
chr7.4 exon 16054388 16054537 16054388 ID=MS.gene072378.t1.exon11;Parent=MS.gene072378.t1
chr7.4 CDS 16054388 16054537 16054388 ID=cds.MS.gene072378.t1;Parent=MS.gene072378.t1
Gene Sequence

>MS.gene072378

ATGATGCAATCTTCTTCATCACCCTCTGTCCTTGGAAACTACATGTGAGTTCTCAATTATGTATATGTGTATATATATCGAGATGAAGTGATGAACAATTAACTGTGTCTTACGTTAAGAAAAATTGGTTTATTTTGTTATTATAATTTTTTTGTTTTGTCTATGTCAGCAGAAATAAAGATTCGGGAGCTTATGATTTGGGTGAATTGGATCAAGCCCTTTTTCTCTATCTTAATGGACAAACTGACCCATCCAGTGTTCAAGACCAAAAACGTGAGTTTTTTTTTTTCCTTCCAAATCCCAATAACGTTTTGCTTGAAATTCAAAAAGAAGGACTCTTTTCCTTTCACTTTTGGTTTGTTATAGAGAATCTCTTTGTTTCACACCAATAGCATGTTCAGCAGAATCATATCTGCAGCAGGGTACTGCCTTTGACCAGATCCTTTCTGCAGAAAAGCAAAACAAACCAAAAGTGTGGAAAAAATGGAATACACATTTTTATTTTTATTTTCAATTTCTTTCTTTTTTCTAAAAAAGGGAAATTTATTCATTTCTCTCTCTATATTTTTCTATATATTTACTTGTATTTTTCTATTAATACTATTCTCAAAATATTTACAAGAGAAGAGAGGTAGAAATGCATCACACTAACTCTTCTTGTAATTCTCATTTGTGAATTCTCTCGTAATCATTTTGTCCTTTGAAAAATAGACCCTCTTTATTCATTCTATCATTTCTCTCTTGATTAGTATATTTATGTTATACTTCTACAAAAAAATGTATATTTATGTTATACACACATAACTATTTAATGTTGCTGAATTTGGTACATGTTTGCGTCTCCACAGAAAATTCAACATCAGGAATGAGGCCACCAACTCTCAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCGTCCAATTCTAAGGTGTAATTAATATAATTATTTCACGATGAATTGTGTTACACACTACTCTCTTATTTTGTTACACTTCATATTAATGGTTTTTTAATTAATTATTTTATAGGCTAGCATGGAGTTAGTTTCTCCGCAAACAAGTGGATCCAAGAGAGGATCAGAGCCACCCAAAGCTGTTAAGGCACGTACAAAAATCATTATATTAAACCAATATGTTAATTAATAGTTTATGATTAAAATGAAAAGAAACAATTATAAGAGTTTGGTTCATCAAAAAAATAATAAGAGTTTGGTAGCATCTTTGAAGCATATGAAGTTCTGAGCTAGTTAATTAAGCTACTCAATTATTGCTAGATATTATTATTATTTTCTTTATCCTAATTAATCACCTACCTATGCGTTTACTATACTATAGCAGCGAGAGAAAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGGTTAACTCTTTAATCTTTTTTTTTTTTGTGTTAAAAAACTATAATCTTTTTATTTTCCCCATTTCATATCCACATTTTATCAATCTTGTTACTTTTTTTTATTCTTTTTGGTGACAATCAGTGCTAACAATATTTTTTTTAATTTTAAATTAAAATGTTTAACTACTTACAGATACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGGAAAAAGGTAAATGGATTCAAATGAAGATCATTAATTAAATTCCATATTTGTGTTGTGTTTTTTACATTTTTTGTCAATGGTAACTTATGAGCTATATATGTATAATTTTATTTGTACTCTTTTTCAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATTAAACTTAATCAGATGGAACAGGAGCTACATCATGCTAGAAATCAAGTAAGAAAACAAGAAAAATATCTTCATGGTAACCTAAAATGCAATAACTGGACATGTCATGATTTATTGTTATTTCCATTTTAGGGCATGTTCTTTGGTGGAGGTGCAATGTTGGGAGGAGAACAAGGCCTTCCTTCTATGAATACCATTAGCTCAGGTGTGATCTCTTTTCCCTTATAATGCATGTTTAATCAATTTAACCTCTTATATAAATATTTGAAATGAATATTTCAGAGGCTGCAATGTTCGACGTGGAATATGCGAGGTGGCTTGAGGAGCACCACCGTTTAGTATGTGAACTAAGAGCTGCAGTTCATGAGCACATTCCTGAGAATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCTCAATATGATCAAGTAGCTCATCTAAAGAGCTTAGTTGCAAAAGCAGATATATTTCATCTTGTTTCTGGCATGTGGGTTACCCCAATTGAACGTTGCTTCATGTGGATTGGTGGATTTAAACCTTCTGAACTCATTAAGGTAGCATAACACTATTCTAAGTAACCAAAGGTTCATGTCATTCATGCCATGACTTAACATTATTTAACAACTACGTACATGACAAATAACTAGTTATTGAATTTCGCGTATGCTTTTTTTTGCAATATTAGTTGAACTTTGGTGAATTTTATGATAATTTTTATGCGAAGAATAGGGAGGGAAATGGTGTAACGTTATAGTCATTCAAAAGGAGAGTTGATGATGTTATAAATTCATAAACTTTGTATTGTCGGTGGGGCTATATACCAAAGAAATAAAAAAGAAGAGCTCACTATGAATTTAATGTCATCAATGAAATGACGAAAGAAAAACTAAAGTATGAAGATTTTCCATATTGTACGGTAGAGTTAGGCTTCATCTTCATGAAAGCCATACCTTATAACATTGATTAAGAAATTTAGTGAAGAAAAAGAAAGTAGCACAACACAAGTCTTTTTCTCTCATTTTTCTTCTTTTTAAGTTTCATGACCTTATTGTTAATGAAATTATGGGAATAGAGTCTTTGTTTACATACCCATCTCTCTTTTCTATTGTAGTTAATCAATAAACTTAAACAACCTCTCGTAAGTCACAAAGCATGGAATCGTATGATTTGACAACCATACTTTCCCGCTTATAGTATTAGTATTGAAATACAAATAACTTTTATGATATGCTCATTATGTAATTTGAAAAGTATTATAGTATTTAGCTTAATTGTTGAATTCAATGTTATAAGGAGAACTATAAGTGGTTTTATTCAATTTTTTATTCTAATTAATAAAGTTATAATTTGTAGTTTTATGTCCAAATGTGATTTTTATGTTTCTATTTTATGTGCATTTTAGATCATTGTGAGTCAAATTGAACCATTGACCGAGCAACAAATAATGGGCATATATGGATTGCAACAATCTACACAACAAGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTCAATCAAAATCTTTCTGAAACTATAACATCAGATTCATTGAGCTATCCTCCCAATATGACCAACTACATGGACCAAATGGCAAGGGCCATGAACAAACTCTCCACTCTTGAAAGTTTCGTGAGAGAGGTACATTACCTTACTTTGACTATTTGACATGCTTCAATTTTTTTAAATAATAGTATTTGCGAATAGGTGACTATTATTAAGTAAGATTAAAAAGAGTATTAAATAATAGTATTCCTTTTGTCATCTAAAAAAAAATAATATAATCTGAAAACGATGTTATATCTATTCATATAGATATTGTTAATCATGGACGTTGAATTTGGTTTATATGTGTATATATTAGTGATTTTTAGGATGGAATTTTGCGACATGCTATCTATATCATGGTTGATTAGTTTTGTGGTCCCTCTATAAGGGCCATGACTTGACAAAGTTTTCATAACTGATTTCGTGGGGGTACTACTGGGTAGGAAGAAGAATCTGTTGTCCTTGGGTAGGGAAACCTACCACACAACCCCATGAACTACTCCTTCCATCCATCTATCTCTTTAAGTTAGTTACATGGAATCTACAAACAAATACATTCAAAATATTTGAATCTCATATTTAGATGCTTATGTATTAATCAAAATCACAAATATGTATATATATTTTTTAAAGTGATTGGATAGAGAGTTAGTTAGTACACATAGGCGTAAAAAGCATAGCAAAGGTACCATAATAAGGTTTCCTAGCTATAAGGTTATGAGGATGTTGTTATTAGAATGAACATTTTATTCACATTGATGAATTTCTAAGGTTTGCTAGTGTGTATACTATTGATAGTATACACGTGAAAGTTAATATTAGTGGTCCCACTGATACAATCCTAATTAAAAGATACTATCCCTCTAGCCCCATATCTATGTGATGTCATGGTCATAACCGTTTGACTTGAAGACAGCACTTATAGACCCTTCCCCATAACATCCTTTTTGAATTTTGACTAAAAGTACAAACGGACGAATAATATTGCTCATGTCTAATATGATTTTTGGTTGAGTGAGTGAGATCATAATGCAAGATTTTTGAATCAAATTGGCCATATCATTTTGTTTTCTTCTAGGTATCAAAATATCGACTGATTTTGGAATTTAATTAGTTGAATTGAATTAAGTTGAAAGCAATGGTAAAACGATCTAATTTTCTTTGTGAAATTTATGGTAGTTAATATGCACCAGCTACCACAATATAGTGTGATTTTTTTTATATGTTGTTCTTTGAAAAATTATGAGCAACTCTTGACAAAAAAAAAAGAATTATGAGCAAATTATCTAACACATTTATAAACATTTAAGATATTTTTACCCACAAGCAAATATACAAAATTTTGTTTGTTAACTATGGGTAATTTTCATTAACAATTCTTGAAATGGTAACCTAGGCCTCACCAATATCATATGTGTTAATTTGTTGTTTTCATCTCACCAAAAGTTGTTCACCGACTTCTATCAATGTCTATATTAGTAGCGGTTTTATTATTACAAGTAATCCAATTATACATCTTTGAATCTATTGTAAGTAACCGATCGGAACAATGGGAAACAAAAGCTAGAGGAATATTAATTAGGTAGACCATATATACTAATGATAATGATTATGAATATGAACATTAGTATAAAGTTAATCTATAAGCTCAGCCAGTCATAGTTTGACCAATTTGTAGTATTTGTCCTTGTTGGACTTTTAGTCACACTATATATTGAACAATAATAGTCACACACACTCTTTGAAAATAATACATATATGTTGAACAATAATAGTCTGAATGTTCTTTCAAAAAAAAAAAAAAATAGTCTGAATGTCATGTAGTCTATATCTATATATTAATTAAAAATAAGGTCTCTAATTTACCCCTTACGTACTTTGAAAAATCGTTTACATACTCTACTGCCTTATATGTTGAAGTGCTAGTGTTATAGATAACCAAAATTTCGGTTAACGTTCCAAATTTGACTAAGAAAACCTATATCATGTTCCTATAACTATTTATTATTCTTGTTTTCAAAGGTAGAAAGGGAAAAGAATGTCTTGTTACAGTTTCGTCTCCAACCTCTTTTTGTCTGTGTCTTTGCAATTTCATTATTTATATTCTCAGTTGAATCTACAAGCAAAAGGTGGAATTTTCAACACACCTCCACACACAAACATATACATTGTCAAATAACTAAATATTACTATATAAATTTATATTATGTGTACTTATCCTCTAGGGTTTCCATCCCTGATCAAGTCAAATTGTGGTTGGATTAATCTAACAATTGAGATTATCGATCACTGTAGTGATAGGAAGGAATTGTGCAGCACTAGAGAATCTAGCCGCAAAATATAGAGTTGACTCAAATTTTCACTAGCATTTATTTATTTTTTTAGACGATTCAACGGCCAGATAATACTGTTCATACTAATATTTGTCGTTTAAAAAAAGAAAATAACCGGTAATTGTGATTTGAATTGAACTTACAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGTCAATCAGCAAGGTGTTTTCTTGCCATGGCTGAGTACTTCCATCGTATGCGAGCATTGAGTTCTCTGTGGGTGGCACGACCGCGTCAAGAATAG

Protein sequence

>MS.gene072378.t1

MMQSSSSPSVLGNYINKDSGAYDLGELDQALFLYLNGQTDPSSVQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELVSPQTSGSKRGSEPPKAREKNHGKGPTSSSEHEGPKTPDPKILRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELHHARNQGMFFGGGAMLGGEQGLPSMNTISSEAAMFDVEYARWLEEHHRLVCELRAAVHEHIPENELRMFVDKFLAQYDQVAHLKSLVAKADIFHLVSGMWVTPIERCFMWIGGFKPSELIKIIVSQIEPLTEQQIMGIYGLQQSTQQGEDALSQGLEALNQNLSETITSDSLSYPPNMTNYMDQMARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQSARCFLAMAEYFHRMRALSSLWVARPRQE