AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46779


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46779.t1 MTR_3g028720 97.787 497 11 0 1 497 1 497 0.0 1013
MS.gene46779.t1 MTR_3g028720 97.821 459 10 0 1 459 1 459 0.0 931
MS.gene46779.t1 MTR_4g066580 87.751 498 60 1 1 497 1 498 0.0 929
MS.gene46779.t1 MTR_3g028720 97.412 425 11 0 1 425 1 425 0.0 858
MS.gene46779.t1 MTR_4g066580 87.850 428 51 1 1 427 1 428 0.0 794
MS.gene46779.t1 MTR_3g028720 97.172 389 11 0 1 389 1 389 0.0 788
MS.gene46779.t1 MTR_4g066590 73.022 493 129 2 5 497 4 492 0.0 776
MS.gene46779.t1 MTR_4g066630 75.053 473 117 1 25 497 27 498 0.0 771
MS.gene46779.t1 MTR_2g098540 72.921 469 127 0 29 497 22 490 0.0 741
MS.gene46779.t1 MTR_2g098520 69.371 493 150 1 6 497 1 493 0.0 734
MS.gene46779.t1 MTR_2g098790 71.215 469 135 0 29 497 29 497 0.0 729
MS.gene46779.t1 MTR_6g078450 69.043 491 151 1 8 497 5 495 0.0 722
MS.gene46779.t1 MTR_4g066630 75.806 434 104 1 25 458 27 459 0.0 713
MS.gene46779.t1 MTR_6g078330 67.677 495 158 1 3 497 4 496 0.0 702
MS.gene46779.t1 MTR_4g066640 67.835 485 152 2 14 497 15 496 0.0 702
MS.gene46779.t1 MTR_2g098540 73.016 441 119 0 57 497 6 446 0.0 699
MS.gene46779.t1 MTR_4g066240 64.848 495 171 1 3 497 4 495 0.0 697
MS.gene46779.t1 MTR_4g066240 64.718 496 171 2 3 497 4 496 0.0 693
MS.gene46779.t1 MTR_4g066210 65.756 476 163 0 22 497 27 502 0.0 692
MS.gene46779.t1 MTR_6g078380 66.335 502 158 5 1 497 1 496 0.0 679
MS.gene46779.t1 MTR_6g078450 69.536 453 137 1 8 459 5 457 0.0 666
MS.gene46779.t1 MTR_5g071520 64.300 507 171 2 1 497 1 507 0.0 658
MS.gene46779.t1 MTR_4g066630 75.689 399 96 1 25 423 27 424 0.0 654
MS.gene46779.t1 MTR_4g066330 61.355 502 163 3 1 497 1 476 0.0 629
MS.gene46779.t1 MTR_4g067040 75.452 387 94 1 25 411 22 407 0.0 627
MS.gene46779.t1 MTR_4g066340 67.361 432 139 2 78 507 2 433 0.0 622
MS.gene46779.t1 MTR_4g066280 60.499 481 158 3 23 497 22 476 0.0 608
MS.gene46779.t1 MTR_3g026280 60.691 463 177 2 35 497 19 476 0.0 599
MS.gene46779.t1 MTR_4g066240 65.083 421 144 1 3 423 4 421 0.0 593
MS.gene46779.t1 MTR_4g067040 75.410 366 89 1 25 390 22 386 0.0 593
MS.gene46779.t1 MTR_6g078330 70.663 392 115 0 106 497 1 392 0.0 593
MS.gene46779.t1 MTR_4g023000 57.500 480 198 3 18 497 4 477 0.0 579
MS.gene46779.t1 MTR_4g066630 75.499 351 85 1 25 375 27 376 0.0 573
MS.gene46779.t1 MTR_6g078330 69.333 375 115 0 123 497 18 392 0.0 556
MS.gene46779.t1 MTR_4g066640 68.519 378 115 2 14 390 15 389 0.0 544
MS.gene46779.t1 MTR_4g015420 56.723 476 166 7 34 497 61 508 0.0 541
MS.gene46779.t1 MTR_6g078330 68.011 372 117 1 3 374 4 373 0.0 533
MS.gene46779.t1 MTR_2g043200 58.134 461 159 6 43 497 70 502 0.0 532
MS.gene46779.t1 MTR_4g015460 56.250 496 171 9 15 496 19 482 0.0 531
MS.gene46779.t1 MTR_3g026400 53.955 493 218 6 6 497 8 492 0.0 531
MS.gene46779.t1 MTR_3g026620 52.834 494 227 4 4 497 6 493 0.0 521
MS.gene46779.t1 MTR_3g026400 54.664 461 199 6 38 497 10 461 1.92e-176 505
MS.gene46779.t1 MTR_4g083000 50.737 475 224 6 27 497 18 486 2.42e-173 498
MS.gene46779.t1 MTR_5g044000 47.082 514 240 7 23 507 6 516 2.46e-167 483
MS.gene46779.t1 MTR_4g081530 48.958 480 238 5 32 507 18 494 1.15e-163 474
MS.gene46779.t1 MTR_0110s0040 47.000 500 258 5 8 507 14 506 1.00e-158 461
MS.gene46779.t1 MTR_0110s0030 45.957 507 259 6 1 507 15 506 3.26e-156 455
MS.gene46779.t1 MTR_3g033790 46.667 465 224 7 38 497 19 464 4.04e-150 438
MS.gene46779.t1 MTR_3g033810 46.452 465 232 7 35 497 18 467 6.05e-149 436
MS.gene46779.t1 MTR_4g131810 45.148 474 244 4 43 507 33 499 9.18e-149 436
MS.gene46779.t1 MTR_2g079580 45.474 475 249 5 38 508 32 500 2.16e-148 435
MS.gene46779.t1 MTR_2g079550 46.105 475 246 5 38 508 30 498 3.56e-148 435
MS.gene46779.t1 MTR_2g022760 45.418 491 248 6 6 493 18 491 9.29e-144 423
MS.gene46779.t1 MTR_3g026400 57.714 350 142 4 6 355 8 351 8.08e-141 410
MS.gene46779.t1 MTR_4g083000 50.253 396 189 4 106 497 1 392 1.27e-139 409
MS.gene46779.t1 MTR_2g022710 45.098 459 247 4 37 493 34 489 1.56e-137 407
MS.gene46779.t1 MTR_4g131800 45.671 462 246 4 43 502 521 979 1.66e-137 422
MS.gene46779.t1 MTR_7g068910 44.685 461 238 6 37 495 30 475 2.64e-136 404
MS.gene46779.t1 MTR_7g068910 43.737 471 238 7 37 495 30 485 4.75e-133 396
MS.gene46779.t1 MTR_4g016920 43.818 461 242 6 37 495 26 471 3.64e-132 394
MS.gene46779.t1 MTR_5g068740 43.803 468 235 9 32 492 21 467 8.59e-132 392
MS.gene46779.t1 MTR_7g033860 43.697 476 242 9 40 507 50 507 6.52e-130 387
MS.gene46779.t1 MTR_1g088610 41.955 491 249 8 8 492 6 466 2.77e-127 385
MS.gene46779.t1 MTR_0108s0030 43.355 459 231 5 39 497 4 433 1.32e-126 377
MS.gene46779.t1 MTR_2g079580 46.923 390 197 5 38 423 32 415 8.97e-125 371
MS.gene46779.t1 MTR_0110s0040 49.311 363 179 4 9 371 15 372 5.54e-120 358
MS.gene46779.t1 MTR_7g051610 44.105 458 236 6 39 495 76 514 2.20e-119 361
MS.gene46779.t1 MTR_2g022710 44.104 424 232 4 37 458 34 454 8.37e-119 357
MS.gene46779.t1 MTR_2g022710 44.000 425 233 4 37 459 34 455 1.09e-118 357
MS.gene46779.t1 MTR_2g022760 46.803 391 202 4 106 493 1 388 1.46e-118 355
MS.gene46779.t1 MTR_7g051510 43.043 460 238 7 39 495 76 514 2.00e-117 356
MS.gene46779.t1 MTR_2g022710 46.015 389 205 4 37 423 34 419 1.22e-116 350
MS.gene46779.t1 MTR_7g051650 41.720 465 242 7 39 497 76 517 1.34e-113 347
MS.gene46779.t1 MTR_7g051650 41.558 462 243 7 39 497 76 513 7.34e-113 344
MS.gene46779.t1 MTR_2g022710 43.846 390 215 3 106 493 1 388 1.44e-112 340
MS.gene46779.t1 MTR_2g022710 45.358 377 201 4 37 411 34 407 1.84e-110 334
MS.gene46779.t1 MTR_1g088630 42.308 442 204 11 57 492 14 410 6.65e-108 329
MS.gene46779.t1 MTR_7g068900 42.356 399 205 6 101 492 17 397 5.89e-107 328
MS.gene46779.t1 MTR_4g016920 42.347 392 210 5 106 495 1 378 2.02e-104 319
MS.gene46779.t1 MTR_2g022710 46.307 352 184 4 37 386 34 382 8.08e-103 315
MS.gene46779.t1 MTR_1g088630 48.758 322 129 6 40 357 29 318 4.53e-102 311
MS.gene46779.t1 MTR_7g056747 41.855 399 206 4 100 497 9 382 1.71e-96 298
MS.gene46779.t1 MTR_1g088630 49.324 296 126 6 40 331 29 304 7.77e-93 285
MS.gene46779.t1 MTR_4g016920 48.889 270 135 2 106 374 1 268 3.09e-89 276
MS.gene46779.t1 MTR_0110s0020 48.496 266 124 5 1 266 15 267 3.10e-81 255
MS.gene46779.t1 MTR_4g122980 26.634 413 219 15 102 501 183 524 1.40e-27 117
MS.gene46779.t1 MTR_8g038650 39.669 121 63 1 249 359 32 152 6.91e-24 98.6
MS.gene46779.t1 MTR_8g038650 48.571 70 35 1 47 116 7 75 1.71e-13 68.9
MS.gene46779.t1 MTR_5g069350 41.606 137 52 5 352 478 48 166 2.32e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46779.t1 AT2G44480 56.632 475 203 2 25 497 20 493 0.0 571
MS.gene46779.t1 AT2G44480 56.632 475 203 2 25 497 51 524 0.0 571
MS.gene46779.t1 AT5G42260 56.212 491 203 4 7 496 6 485 0.0 566
MS.gene46779.t1 AT5G44640 55.601 491 206 4 7 496 6 485 0.0 563
MS.gene46779.t1 AT2G44450 57.082 466 193 3 38 503 31 489 0.0 557
MS.gene46779.t1 AT3G60130 56.087 460 196 3 38 496 30 484 0.0 537
MS.gene46779.t1 AT2G25630 55.120 459 183 4 38 495 30 466 0.0 522
MS.gene46779.t1 AT1G51470 52.802 464 205 7 34 495 41 492 1.44e-177 509
MS.gene46779.t1 AT5G24550 52.350 468 210 6 38 497 32 494 3.47e-177 509
MS.gene46779.t1 AT3G60140 49.364 472 235 4 29 497 17 487 8.56e-175 504
MS.gene46779.t1 AT1G47600 51.724 464 210 7 34 495 41 492 1.15e-173 499
MS.gene46779.t1 AT1G47600 51.724 464 209 7 34 495 41 491 4.96e-173 498
MS.gene46779.t1 AT2G44470 49.028 463 232 4 38 497 29 490 1.01e-169 492
MS.gene46779.t1 AT5G24540 49.698 497 235 7 9 497 5 494 6.80e-169 488
MS.gene46779.t1 AT2G44480 56.122 392 171 1 106 497 1 391 8.68e-169 483
MS.gene46779.t1 AT3G60120 51.392 467 216 7 37 497 13 474 9.93e-168 485
MS.gene46779.t1 AT1G26560 48.536 478 226 5 30 497 24 491 2.64e-167 483
MS.gene46779.t1 AT2G44490 50.429 466 225 5 37 497 13 477 4.16e-167 484
MS.gene46779.t1 AT5G54570 49.791 478 230 5 37 508 29 502 5.17e-167 483
MS.gene46779.t1 AT2G44460 50.105 475 229 6 34 502 25 497 9.75e-166 481
MS.gene46779.t1 AT3G18080 49.266 477 235 5 33 508 34 504 3.74e-162 470
MS.gene46779.t1 AT5G25980 47.262 493 250 8 6 495 19 504 3.17e-160 466
MS.gene46779.t1 AT3G60130 55.087 403 175 3 95 496 35 432 2.28e-159 461
MS.gene46779.t1 AT3G60130 53.846 403 169 4 95 496 35 421 1.01e-151 441
MS.gene46779.t1 AT2G44470 47.754 423 218 3 38 458 29 450 6.54e-151 439
MS.gene46779.t1 AT3G18070 45.588 476 244 6 33 507 25 486 2.33e-150 439
MS.gene46779.t1 AT3G09260 46.552 464 241 6 38 497 35 495 3.04e-150 440
MS.gene46779.t1 AT3G21370 46.596 470 237 8 37 497 32 496 3.99e-150 440
MS.gene46779.t1 AT5G54570 50.117 427 205 3 37 459 29 451 6.21e-150 436
MS.gene46779.t1 AT5G36890 47.930 459 226 4 40 497 18 464 9.77e-150 437
MS.gene46779.t1 AT5G36890 47.930 459 226 4 40 497 18 464 1.12e-149 437
MS.gene46779.t1 AT5G24540 50.943 424 204 4 38 458 32 454 1.19e-149 436
MS.gene46779.t1 AT3G03640 45.396 467 249 4 36 497 32 497 2.39e-149 438
MS.gene46779.t1 AT3G18070 45.588 476 250 6 33 507 25 492 2.58e-149 437
MS.gene46779.t1 AT5G26000 45.090 499 256 9 7 495 3 493 9.88e-149 437
MS.gene46779.t1 AT1G75940 47.122 469 236 8 38 497 37 502 3.72e-148 435
MS.gene46779.t1 AT3G60140 48.866 397 200 3 29 423 17 412 4.81e-146 427
MS.gene46779.t1 AT2G32860 45.043 464 251 4 37 497 93 555 1.58e-145 431
MS.gene46779.t1 AT2G32860 44.397 464 255 3 37 497 93 556 2.93e-144 428
MS.gene46779.t1 AT5G28510 45.745 470 243 7 37 497 38 504 3.27e-144 425
MS.gene46779.t1 AT1G52400 43.984 507 266 11 1 497 2 500 2.09e-143 422
MS.gene46779.t1 AT1G52400 43.984 507 266 11 1 497 2 500 2.09e-143 422
MS.gene46779.t1 AT5G25980 46.269 469 235 8 2 459 5 467 5.58e-143 419
MS.gene46779.t1 AT5G25980 46.269 469 235 8 2 459 5 467 5.58e-143 419
MS.gene46779.t1 AT1G66280 46.888 482 238 11 26 497 22 495 2.63e-142 420
MS.gene46779.t1 AT1G66270 45.738 481 248 9 24 497 21 495 2.02e-141 417
MS.gene46779.t1 AT1G02850 45.788 463 233 7 35 495 21 467 2.51e-138 409
MS.gene46779.t1 AT1G66270 45.322 481 248 10 24 497 21 493 6.22e-138 408
MS.gene46779.t1 AT2G44480 60.000 315 123 2 25 337 51 364 1.08e-137 403
MS.gene46779.t1 AT1G61810 45.254 453 243 4 43 492 38 488 2.35e-136 405
MS.gene46779.t1 AT5G54570 48.900 409 199 5 106 508 1 405 3.59e-136 401
MS.gene46779.t1 AT1G61810 45.254 453 243 4 43 492 38 488 4.04e-136 404
MS.gene46779.t1 AT4G21760 41.617 507 284 6 3 507 21 517 7.29e-136 404
MS.gene46779.t1 AT4G27830 43.871 465 241 6 34 495 19 466 2.05e-135 401
MS.gene46779.t1 AT1G61820 44.493 454 247 5 43 493 35 486 2.70e-135 401
MS.gene46779.t1 AT1G02850 43.943 487 230 9 35 495 21 490 7.48e-134 398
MS.gene46779.t1 AT2G44450 54.493 345 150 3 159 503 1 338 1.60e-133 391
MS.gene46779.t1 AT1G02850 44.262 488 228 10 35 495 21 491 1.40e-132 395
MS.gene46779.t1 AT5G26000 44.828 464 235 9 7 459 3 456 3.35e-132 391
MS.gene46779.t1 AT1G60090 43.167 461 239 7 38 495 24 464 7.06e-130 387
MS.gene46779.t1 AT4G21760 41.188 505 279 7 3 507 21 507 1.42e-129 387
MS.gene46779.t1 AT2G44470 50.149 335 165 2 38 371 29 362 1.69e-128 380
MS.gene46779.t1 AT4G27820 44.372 462 235 6 37 495 22 464 6.36e-128 382
MS.gene46779.t1 AT4G22100 43.137 459 240 8 40 495 24 464 7.98e-128 382
MS.gene46779.t1 AT1G02850 44.276 463 213 8 35 495 21 440 1.49e-127 380
MS.gene46779.t1 AT1G52400 43.683 467 246 10 1 458 2 460 1.84e-127 379
MS.gene46779.t1 AT1G60090 41.505 465 248 8 38 495 24 471 6.91e-126 377
MS.gene46779.t1 AT3G62750 41.810 464 239 7 35 495 20 455 4.02e-125 375
MS.gene46779.t1 AT3G62750 40.882 499 261 9 3 495 11 481 5.41e-125 375
MS.gene46779.t1 AT1G45191 42.174 460 239 8 39 495 30 465 2.72e-122 368
MS.gene46779.t1 AT1G45191 41.739 460 247 8 39 495 30 471 1.23e-120 363
MS.gene46779.t1 AT1G45191 41.432 461 252 7 39 495 30 476 1.01e-119 362
MS.gene46779.t1 AT1G02850 45.894 414 189 7 35 423 21 424 1.78e-119 358
MS.gene46779.t1 AT1G45191 40.977 471 252 8 39 495 30 488 9.70e-118 357
MS.gene46779.t1 AT3G62740 39.224 464 256 8 35 495 20 460 6.07e-116 351
MS.gene46779.t1 AT5G48375 42.630 441 185 6 38 477 38 411 1.71e-115 348
MS.gene46779.t1 AT1G51490 50.143 349 157 7 45 390 27 361 7.74e-114 343
MS.gene46779.t1 AT3G62750 40.860 465 241 9 3 461 11 447 3.33e-113 343
MS.gene46779.t1 AT1G61810 44.792 384 207 4 43 423 38 419 5.21e-112 338
MS.gene46779.t1 AT1G61810 44.961 387 208 4 109 492 4 388 1.19e-111 337
MS.gene46779.t1 AT2G44460 50.568 352 167 5 157 502 1 351 3.16e-110 334
MS.gene46779.t1 AT3G18070 48.615 325 161 4 33 357 25 343 6.88e-109 329
MS.gene46779.t1 AT3G62740 40.047 427 230 8 35 458 20 423 3.03e-106 324
MS.gene46779.t1 AT3G62750 45.748 341 165 5 35 371 20 344 3.53e-106 322
MS.gene46779.t1 AT3G62750 45.748 341 165 5 35 371 20 344 3.53e-106 322
MS.gene46779.t1 AT1G45191 47.649 319 159 3 39 357 30 340 1.59e-105 322
MS.gene46779.t1 AT1G45191 47.649 319 159 3 39 357 30 340 1.65e-105 322
MS.gene46779.t1 AT1G60270 45.821 347 177 5 38 381 24 362 2.19e-105 320
MS.gene46779.t1 AT3G62750 45.455 341 166 4 35 371 46 370 4.09e-105 321
MS.gene46779.t1 AT2G44480 51.943 283 135 1 215 497 6 287 4.72e-105 317
MS.gene46779.t1 AT4G27830 42.239 393 209 5 106 495 1 378 7.33e-105 320
MS.gene46779.t1 AT4G27820 42.239 393 210 5 106 495 1 379 2.50e-97 301
MS.gene46779.t1 AT4G27820 42.239 393 210 5 106 495 1 379 2.50e-97 301
MS.gene46779.t1 AT1G61820 43.478 345 191 4 152 493 4 347 1.12e-95 295
MS.gene46779.t1 AT3G18070 45.779 308 163 3 189 495 99 403 3.12e-93 290
MS.gene46779.t1 AT3G18070 48.529 68 34 1 33 100 25 91 2.77e-14 75.5
MS.gene46779.t1 AT3G62750 39.186 393 213 6 106 495 1 370 3.52e-93 290
MS.gene46779.t1 AT3G62750 39.186 393 213 6 106 495 1 370 3.52e-93 290
MS.gene46779.t1 AT1G61810 51.321 265 127 2 43 307 38 300 1.17e-91 282
MS.gene46779.t1 AT3G18070 44.118 306 167 3 203 507 1 303 1.79e-87 271
MS.gene46779.t1 AT1G60270 45.487 277 144 4 108 381 3 275 4.75e-78 246
MS.gene46779.t1 AT3G18070 45.798 238 127 2 189 425 99 335 1.40e-68 224
MS.gene46779.t1 AT3G18070 48.529 68 34 1 33 100 25 91 1.68e-14 75.5
MS.gene46779.t1 AT3G18070 45.089 224 121 2 203 425 1 223 4.24e-63 206
MS.gene46779.t1 AT5G16580 36.424 302 159 8 178 469 21 299 4.92e-51 176
MS.gene46779.t1 AT3G06510 28.302 424 213 18 101 492 159 523 1.21e-27 117
MS.gene46779.t1 AT3G06510 27.407 405 207 15 101 492 159 489 3.54e-27 115

Find 106 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTGATTTCAGGTTTA+TGG 0.071595 3.3:+21117100 MS.gene46779:intron
CTATGCTGAACTTTGCTTTA+AGG 0.084262 3.3:+21116399 MS.gene46779:CDS
TATATATACCTGGATATTTA+TGG 0.130865 3.3:-21115303 None:intergenic
TAATTTCATCAACGAGTTAT+TGG 0.184666 3.3:+21115960 MS.gene46779:CDS
TTCCCCAAAGGATTTATATT+TGG 0.190969 3.3:+21114961 MS.gene46779:CDS
GAACTTTGCTTTAAGGAATT+TGG 0.193613 3.3:+21116406 MS.gene46779:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3.3:+21117639 MS.gene46779:CDS
TAGCTACTTGACAGATTCTT+TGG 0.267402 3.3:+21117298 MS.gene46779:CDS
GAATCACCACCGGTGCAATT+TGG 0.289089 3.3:-21116535 None:intergenic
GAAACTCAAAAGGGTGTAAT+AGG 0.295734 3.3:+21116804 MS.gene46779:CDS
TGGGAAACCTATTGGTATTA+AGG 0.303617 3.3:+21117448 MS.gene46779:CDS
TGCTCCAAATATAAATCCTT+TGG 0.329647 3.3:-21114965 None:intergenic
CCATGGAGTTACAGTCAAAA+TGG 0.331262 3.3:+21116463 MS.gene46779:CDS
TTGGTGATAGAGTGAAATAT+TGG 0.342182 3.3:+21116425 MS.gene46779:CDS
GTGGTAGAACACCAAGTATA+TGG 0.346943 3.3:+21115269 MS.gene46779:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3.3:+21115232 MS.gene46779:intron
GCTCCAAATATAAATCCTTT+GGG 0.358972 3.3:-21114964 None:intergenic
GTTTACCTTGTAGTTGTGAT+AGG 0.362624 3.3:-21115476 None:intergenic
ATATATACCTGGATATTTAT+GGG 0.366623 3.3:-21115302 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3.3:-21114858 None:intergenic
TGGTAGTGCGTGACAATATA+GGG 0.377896 3.3:-21116568 None:intergenic
TCAGGTTATTCAGTGAGATT+TGG 0.385813 3.3:+21118047 MS.gene46779:CDS
CACCAGGTCGTTGTTCTAGT+TGG 0.391277 3.3:+21116506 MS.gene46779:CDS
ATCAACGAGTTATTGGCTAA+TGG 0.391833 3.3:+21115967 MS.gene46779:CDS
TTGGTAGTGCGTGACAATAT+AGG 0.392629 3.3:-21116569 None:intergenic
CTTTGTCTTGTACACATTGA+CGG 0.398620 3.3:-21116611 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3.3:-21116605 None:intergenic
AAGTGTCCATGAGCGATTCT+TGG 0.413109 3.3:-21117821 None:intergenic
TAATTCCAGTTGAGCGAAAT+GGG 0.419967 3.3:+21117429 MS.gene46779:intron
GATAATATAGATGACGATAA+TGG 0.420645 3.3:-21117857 None:intergenic
ACCTTTGTAGATTACAAGAA+TGG 0.424339 3.3:+21118074 MS.gene46779:CDS
GTATAACCTTGGTAGCTAAC+TGG 0.426224 3.3:+21116826 MS.gene46779:CDS
AGCAAAGTTCAGCATAGTCT+TGG 0.431539 3.3:-21116393 None:intergenic
TGGTGATAGAGTGAAATATT+GGG 0.433375 3.3:+21116426 MS.gene46779:CDS
TTAATTCCAGTTGAGCGAAA+TGG 0.437258 3.3:+21117428 MS.gene46779:intron
AGAGCTGTTGATTTCATGTA+TGG 0.448211 3.3:+21116894 MS.gene46779:CDS
ACATGTGCAGGAAACTCAAA+AGG 0.455499 3.3:+21116794 MS.gene46779:intron
GAGCGAAATGGGAAACCTAT+TGG 0.456595 3.3:+21117440 MS.gene46779:CDS
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3.3:+21117550 MS.gene46779:intron
TTTCAGTGATGTAAATCAAC+GGG 0.461224 3.3:-21117635 None:intergenic
AGTCAAAATGGCTATGCAAA+TGG 0.462239 3.3:+21116475 MS.gene46779:CDS
TTTATGGATCCACTGACAAC+AGG 0.462467 3.3:+21117116 MS.gene46779:CDS
AAAGGATTTATATTTGGAGC+AGG 0.463085 3.3:+21114967 MS.gene46779:CDS
GGTCTAGCATTGCTTAGAAA+TGG 0.463232 3.3:-21117275 None:intergenic
TGACGTACCTTAATACCAAT+AGG 0.465150 3.3:-21117455 None:intergenic
TGTGTACAAGACAAAGTATC+AGG 0.470745 3.3:+21116618 MS.gene46779:CDS
ATGTCCAAGGATATTACATA+TGG 0.472693 3.3:+21117997 MS.gene46779:CDS
CATACAGATTCTCCTTATCC+TGG 0.474985 3.3:+21115774 MS.gene46779:CDS
AAAAGCATGAGATCCCTTGT+TGG 0.489756 3.3:+21117149 MS.gene46779:CDS
AAACAATCTAAGCTACTCAT+TGG 0.490000 3.3:+21117197 MS.gene46779:CDS
GGATAATCTCCTGTTGTCAG+TGG 0.497044 3.3:-21117125 None:intergenic
TTTGAAGGTGCAGCAAATGA+AGG 0.505148 3.3:+21115247 MS.gene46779:CDS
TACTCATCTTCTAAAACTTG+TGG 0.505778 3.3:-21116119 None:intergenic
ATAATAGAAGGAAAGCTTAG+TGG 0.509606 3.3:+21115904 MS.gene46779:intron
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3.3:-21114849 None:intergenic
ACTCATCTTCTAAAACTTGT+GGG 0.516161 3.3:-21116118 None:intergenic
CTTCGGCATGAGCTAAAAGT+TGG 0.521456 3.3:-21116588 None:intergenic
AATCATCAAGGATATGAACT+TGG 0.522377 3.3:+21115748 MS.gene46779:CDS
TGGTAGAACACCAAGTATAT+GGG 0.523979 3.3:+21115270 MS.gene46779:CDS
AGGACCATATGTAATATCCT+TGG 0.529150 3.3:-21118001 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.530752 3.3:-21114995 None:intergenic
CAATATTCTAGACCAGGATA+AGG 0.535004 3.3:-21115786 None:intergenic
GTAGTTGTGATAGGAATCAA+TGG 0.537086 3.3:-21115467 None:intergenic
AGCAGGATCTTCCTCATACC+AGG 0.542249 3.3:+21114984 MS.gene46779:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3.3:-21117296 None:intergenic
ACTTTCACCCATAAATATCC+AGG 0.543624 3.3:+21115295 MS.gene46779:CDS
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3.3:-21117163 None:intergenic
CTCAATCGCGGAATCACCAC+CGG 0.558060 3.3:-21116545 None:intergenic
AAGTACTCGAACGGAACACT+AGG 0.562540 3.3:-21118670 None:intergenic
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3.3:-21117162 None:intergenic
GCAAATGGACGAATGGCACC+AGG 0.570578 3.3:+21116490 MS.gene46779:CDS
TTAGAAACTCACACTATGAG+AGG 0.571715 3.3:-21116158 None:intergenic
GGAAGATGTTAGAATCATCA+AGG 0.575017 3.3:+21115736 MS.gene46779:intron
ATCGGTCCAAGAATCGCTCA+TGG 0.576413 3.3:+21117815 MS.gene46779:CDS
AATGAAGCAACATCAAGAAG+TGG 0.577727 3.3:-21114925 None:intergenic
AGTAGAAACAGTTTCCCCAA+AGG 0.582354 3.3:+21114949 MS.gene46779:CDS
GTGAAAGTATCCCATATACT+TGG 0.583793 3.3:-21115280 None:intergenic
GTACAGTGATCCTACACTAT+CGG 0.588636 3.3:+21117797 MS.gene46779:CDS
TGGCTATGCAAATGGACGAA+TGG 0.589653 3.3:+21116483 MS.gene46779:CDS
TAGAAACTCACACTATGAGA+GGG 0.590350 3.3:-21116157 None:intergenic
GCTTAGAAATGGTGCATCTG+AGG 0.591574 3.3:-21117264 None:intergenic
ACCATTCTTGTAATCTACAA+AGG 0.593807 3.3:-21118075 None:intergenic
TGGTTGAATCCAAATTGCAC+CGG 0.596108 3.3:+21116526 MS.gene46779:CDS
CTCCAAATATAAATCCTTTG+GGG 0.598486 3.3:-21114963 None:intergenic
CAAGTACCAGTTAGCTACCA+AGG 0.611246 3.3:-21116832 None:intergenic
AGTGGTGGCATAAATCAAGA+AGG 0.614322 3.3:+21115922 MS.gene46779:CDS
ACTTGGCAATATTCTAGACC+AGG 0.618905 3.3:-21115792 None:intergenic
AGAAGATCACGAATTCCTCT+CGG 0.618923 3.3:-21117585 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3.3:+21116446 MS.gene46779:CDS
CTGTTGATTTCATGTATGGA+TGG 0.624632 3.3:+21116898 MS.gene46779:CDS
GACAATATAGGGCTCAATCG+CGG 0.624861 3.3:-21116557 None:intergenic
CCATTCAAAATTGTCGAACA+AGG 0.625604 3.3:-21118021 None:intergenic
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3.3:+21117570 MS.gene46779:CDS
CATGTGCAGGAAACTCAAAA+GGG 0.627665 3.3:+21116795 MS.gene46779:intron
AGGCAAGGTGCAAATGTCCA+AGG 0.639904 3.3:+21117984 MS.gene46779:intron
TCAGATTTGGAATCTGAGAG+TGG 0.642241 3.3:-21116855 None:intergenic
GGGTGTAATAGGTATAACCT+TGG 0.642396 3.3:+21116815 MS.gene46779:CDS
TGATCTTCTGTTATACACCA+AGG 0.647502 3.3:+21117599 MS.gene46779:CDS
CACATGTTGAAGTACTCGAA+CGG 0.648764 3.3:-21118679 None:intergenic
ATAGAAGGAAAGCTTAGTGG+TGG 0.648918 3.3:+21115907 MS.gene46779:intron
TGATTCCTATCACAACTACA+AGG 0.656101 3.3:+21115471 MS.gene46779:CDS
GATTCTTGGACCGATAGTGT+AGG 0.670328 3.3:-21117807 None:intergenic
TTGAATCCAAATTGCACCGG+TGG 0.672179 3.3:+21116529 MS.gene46779:CDS
GAAGGTGCAGCAAATGAAGG+TGG 0.681013 3.3:+21115250 MS.gene46779:CDS
AACCAACTAGAACAACGACC+TGG 0.698527 3.3:-21116508 None:intergenic
TCGAACGGAACACTAGGACA+AGG 0.728516 3.3:-21118664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTGTCAATAATTTT+AGG + chr3.3:21116059-21116078 MS.gene46779:intron 10.0%
!!! TTAAATTTTATATATATACC+TGG - chr3.3:21115316-21115335 None:intergenic 10.0%
!! ACTAAATATGATATATAGTT+AGG - chr3.3:21117673-21117692 None:intergenic 15.0%
!! TTATCAATATTAAACTTACT+TGG - chr3.3:21115812-21115831 None:intergenic 15.0%
!! TTCTATTTAAAGACATTAAA+CGG + chr3.3:21116743-21116762 MS.gene46779:intron 15.0%
!!! AAAAAACATGTTTTCTAAAT+TGG + chr3.3:21118544-21118563 MS.gene46779:intron 15.0%
!!! AAAAATCATGGATTAATATT+AGG + chr3.3:21116995-21117014 MS.gene46779:intron 15.0%
!!! GATATATATTTTACTTCATT+CGG - chr3.3:21116329-21116348 None:intergenic 15.0%
!!! TTGTTGTTCATATATATTAT+AGG + chr3.3:21115715-21115734 MS.gene46779:intron 15.0%
!!! TTTATTTATGATTAGTTTGA+AGG + chr3.3:21115232-21115251 MS.gene46779:intron 15.0%
!!! TTTTAAAAAGCAAAAAATCA+TGG + chr3.3:21116983-21117002 MS.gene46779:intron 15.0%
!! AACTATTTATCCATAATAGA+AGG + chr3.3:21115892-21115911 MS.gene46779:intron 20.0%
!! ATATATACCTGGATATTTAT+GGG - chr3.3:21115305-21115324 None:intergenic 20.0%
!! ATCATCAACAACAAAATATA+GGG - chr3.3:21116036-21116055 None:intergenic 20.0%
!! GATATGGTTAAATGAATTTA+TGG + chr3.3:21117058-21117077 MS.gene46779:intron 20.0%
!! TATATATACCTGGATATTTA+TGG - chr3.3:21115306-21115325 None:intergenic 20.0%
!!! AAAATAAATCAAAAAGTGTG+AGG - chr3.3:21116940-21116959 None:intergenic 20.0%
!!! AAATAAATCAAAAAGTGTGA+GGG - chr3.3:21116939-21116958 None:intergenic 20.0%
!!! AATTTTAGGTATAAAACCAT+TGG + chr3.3:21116073-21116092 MS.gene46779:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr3.3:21117215-21117234 MS.gene46779:CDS 20.0%
!!! CTCATTTTAAATCATCAAAT+TGG - chr3.3:21115022-21115041 None:intergenic 20.0%
!!! GTAATATTGATTTTGTGTTT+AGG + chr3.3:21115671-21115690 MS.gene46779:intron 20.0%
!!! TTCATTATTTTGTTCTAAAG+AGG + chr3.3:21118236-21118255 MS.gene46779:intron 20.0%
!!! TTGATTCAATTTTAGAATCA+AGG + chr3.3:21118326-21118345 MS.gene46779:intron 20.0%
! AAAAGTCTAACAATTGTTTG+AGG - chr3.3:21116670-21116689 None:intergenic 25.0%
! AATTGGAGTAATTAATTACC+TGG - chr3.3:21115005-21115024 None:intergenic 25.0%
! AGTAGATAATTTATCGACAA+CGG + chr3.3:21116709-21116728 MS.gene46779:intron 25.0%
! ATGTCTCTTATAAATAAGAC+AGG - chr3.3:21116220-21116239 None:intergenic 25.0%
! GATAATATAGATGACGATAA+TGG - chr3.3:21117860-21117879 None:intergenic 25.0%
! GATCATCAACAACAAAATAT+AGG - chr3.3:21116037-21116056 None:intergenic 25.0%
! TAATTTCATCAACGAGTTAT+TGG + chr3.3:21115960-21115979 MS.gene46779:CDS 25.0%
! TAGAACATCGTTAAATTGAT+TGG - chr3.3:21117941-21117960 None:intergenic 25.0%
! TATGGTTTATAGACATTTCT+AGG + chr3.3:21117020-21117039 MS.gene46779:intron 25.0%
! TATTTATATGTTACATGTGC+AGG + chr3.3:21116782-21116801 MS.gene46779:intron 25.0%
! TCAACAAAAATTGATGTATC+TGG - chr3.3:21116282-21116301 None:intergenic 25.0%
! TGATGTATCTGGTTAAAAAT+TGG - chr3.3:21116271-21116290 None:intergenic 25.0%
! TGCATTACACTTATATCTAA+GGG + chr3.3:21115591-21115610 MS.gene46779:intron 25.0%
! TTGATTTACATCACTGAAAA+TGG + chr3.3:21117639-21117658 MS.gene46779:CDS 25.0%
!! ATCAAAAGTTGATTGATTTC+AGG + chr3.3:21117093-21117112 MS.gene46779:intron 25.0%
!! ATGGATTAATATTAGGACTA+TGG + chr3.3:21117002-21117021 MS.gene46779:intron 25.0%
!! GTCATATATTTTTCGTGATA+TGG + chr3.3:21117042-21117061 MS.gene46779:intron 25.0%
!! GTTATTGATTGAAAAGTTAG+AGG + chr3.3:21118468-21118487 MS.gene46779:intron 25.0%
!! TTGCATATCTTTTCTATTTG+TGG + chr3.3:21117405-21117424 MS.gene46779:intron 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG - chr3.3:21117639-21117658 None:intergenic 25.0%
!!! GATTGTTTTGCATTGAATTT+TGG - chr3.3:21117185-21117204 None:intergenic 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG - chr3.3:21116376-21116395 None:intergenic 25.0%
AAACAATCTAAGCTACTCAT+TGG + chr3.3:21117197-21117216 MS.gene46779:CDS 30.0%
AATCATCAAGGATATGAACT+TGG + chr3.3:21115748-21115767 MS.gene46779:CDS 30.0%
ACCATTCTTGTAATCTACAA+AGG - chr3.3:21118078-21118097 None:intergenic 30.0%
ACCTTTGTAGATTACAAGAA+TGG + chr3.3:21118074-21118093 MS.gene46779:CDS 30.0%
ACTAAGCTTTCCTTCTATTA+TGG - chr3.3:21115905-21115924 None:intergenic 30.0%
ATAATAGAAGGAAAGCTTAG+TGG + chr3.3:21115904-21115923 MS.gene46779:intron 30.0%
ATGTCCAAGGATATTACATA+TGG + chr3.3:21117997-21118016 MS.gene46779:CDS 30.0%
CTCCAAATATAAATCCTTTG+GGG - chr3.3:21114966-21114985 None:intergenic 30.0%
CTCTTATAAATAAGACAGGA+GGG - chr3.3:21116216-21116235 None:intergenic 30.0%
CTGTCATACATAAAGGAAAA+TGG - chr3.3:21117966-21117985 None:intergenic 30.0%
GACGTGCATAATTTACTTAT+AGG + chr3.3:21117765-21117784 MS.gene46779:intron 30.0%
GCTCCAAATATAAATCCTTT+GGG - chr3.3:21114967-21114986 None:intergenic 30.0%
GTAATTAATTACCTGGTATG+AGG - chr3.3:21114998-21115017 None:intergenic 30.0%
GTGCATTACACTTATATCTA+AGG + chr3.3:21115590-21115609 MS.gene46779:intron 30.0%
TAGTAAGAGAACTCATAGAA+TGG - chr3.3:21117354-21117373 None:intergenic 30.0%
TAGTCTCTTACATCTCTAAA+AGG + chr3.3:21117901-21117920 MS.gene46779:intron 30.0%
TCTCTTATAAATAAGACAGG+AGG - chr3.3:21116217-21116236 None:intergenic 30.0%
TGCTCCAAATATAAATCCTT+TGG - chr3.3:21114968-21114987 None:intergenic 30.0%
TGGTGATAGAGTGAAATATT+GGG + chr3.3:21116426-21116445 MS.gene46779:CDS 30.0%
TTCCCCAAAGGATTTATATT+TGG + chr3.3:21114961-21114980 MS.gene46779:CDS 30.0%
TTGAAAAGTTAGAGGATACA+AGG + chr3.3:21118476-21118495 MS.gene46779:intron 30.0%
TTTCAGTGATGTAAATCAAC+GGG - chr3.3:21117638-21117657 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG + chr3.3:21114967-21114986 MS.gene46779:CDS 30.0%
! CATTTTCCTTTATGTATGAC+AGG + chr3.3:21117964-21117983 MS.gene46779:intron 30.0%
! GAAATTAGTTTCTTACATGC+TGG - chr3.3:21117329-21117348 None:intergenic 30.0%
! TTGGTGATAGAGTGAAATAT+TGG + chr3.3:21116425-21116444 MS.gene46779:CDS 30.0%
! TTTCTTTAACTTTCGTACGA+TGG - chr3.3:21118428-21118447 None:intergenic 30.0%
!! ACTCATCTTCTAAAACTTGT+GGG - chr3.3:21116121-21116140 None:intergenic 30.0%
!! GAACTTTGCTTTAAGGAATT+TGG + chr3.3:21116406-21116425 MS.gene46779:CDS 30.0%
!! GTTGATTGATTTCAGGTTTA+TGG + chr3.3:21117100-21117119 MS.gene46779:intron 30.0%
!! TACTCATCTTCTAAAACTTG+TGG - chr3.3:21116122-21116141 None:intergenic 30.0%
!! TCCATTTTTCATTCCCTTTT+CGG - chr3.3:21118272-21118291 None:intergenic 30.0%
!!! ATTGGTGACACTTTTTCATT+GGG + chr3.3:21116091-21116110 MS.gene46779:CDS 30.0%
!!! CAAGTTTTAGAAGATGAGTA+TGG + chr3.3:21116122-21116141 MS.gene46779:CDS 30.0%
AAAGAATCTGTCAAGTAGCT+AGG - chr3.3:21117299-21117318 None:intergenic 35.0%
AATGAAGCAACATCAAGAAG+TGG - chr3.3:21114928-21114947 None:intergenic 35.0%
ACCGAAAAGGGAATGAAAAA+TGG + chr3.3:21118268-21118287 MS.gene46779:intron 35.0%
ACTTTCACCCATAAATATCC+AGG + chr3.3:21115295-21115314 MS.gene46779:CDS 35.0%
AGGACCATATGTAATATCCT+TGG - chr3.3:21118004-21118023 None:intergenic 35.0%
AGTCAAAATGGCTATGCAAA+TGG + chr3.3:21116475-21116494 MS.gene46779:CDS 35.0%
CAATATTCTAGACCAGGATA+AGG - chr3.3:21115789-21115808 None:intergenic 35.0%
CAGCAAAATCGTTAGAAGAA+AGG - chr3.3:21117487-21117506 None:intergenic 35.0%
CCATTCAAAATTGTCGAACA+AGG - chr3.3:21118024-21118043 None:intergenic 35.0%
CTATGCTGAACTTTGCTTTA+AGG + chr3.3:21116399-21116418 MS.gene46779:CDS 35.0%
CTTTGTCTTGTACACATTGA+CGG - chr3.3:21116614-21116633 None:intergenic 35.0%
GGAAGATGTTAGAATCATCA+AGG + chr3.3:21115736-21115755 MS.gene46779:intron 35.0%
GTAGTTGTGATAGGAATCAA+TGG - chr3.3:21115470-21115489 None:intergenic 35.0%
GTTTACCTTGTAGTTGTGAT+AGG - chr3.3:21115479-21115498 None:intergenic 35.0%
TAATTCCAGTTGAGCGAAAT+GGG + chr3.3:21117429-21117448 MS.gene46779:intron 35.0%
TAGAAACTCACACTATGAGA+GGG - chr3.3:21116160-21116179 None:intergenic 35.0%
TAGCTACTTGACAGATTCTT+TGG + chr3.3:21117298-21117317 MS.gene46779:CDS 35.0%
TCAGGTTATTCAGTGAGATT+TGG + chr3.3:21118047-21118066 MS.gene46779:CDS 35.0%
TGACGTACCTTAATACCAAT+AGG - chr3.3:21117458-21117477 None:intergenic 35.0%
TGATCTTCTGTTATACACCA+AGG + chr3.3:21117599-21117618 MS.gene46779:CDS 35.0%
TGATTCCTATCACAACTACA+AGG + chr3.3:21115471-21115490 MS.gene46779:CDS 35.0%
TGGGAAACCTATTGGTATTA+AGG + chr3.3:21117448-21117467 MS.gene46779:CDS 35.0%
TGGTAGAACACCAAGTATAT+GGG + chr3.3:21115270-21115289 MS.gene46779:CDS 35.0%
TTAATTCCAGTTGAGCGAAA+TGG + chr3.3:21117428-21117447 MS.gene46779:intron 35.0%
TTAGAAACTCACACTATGAG+AGG - chr3.3:21116161-21116180 None:intergenic 35.0%
TTATGCAGATTGCTTCTGAT+TGG + chr3.3:21117550-21117569 MS.gene46779:intron 35.0%
! AGCAGCTTTTTGATCAGATT+TGG - chr3.3:21116871-21116890 None:intergenic 35.0%
! ATCAACGAGTTATTGGCTAA+TGG + chr3.3:21115967-21115986 MS.gene46779:CDS 35.0%
! CCTTGTTCGACAATTTTGAA+TGG + chr3.3:21118021-21118040 MS.gene46779:CDS 35.0%
! CTTTCTTCTAACGATTTTGC+TGG + chr3.3:21117485-21117504 MS.gene46779:intron 35.0%
! GAAACTCAAAAGGGTGTAAT+AGG + chr3.3:21116804-21116823 MS.gene46779:CDS 35.0%
! TGTGTACAAGACAAAGTATC+AGG + chr3.3:21116618-21116637 MS.gene46779:CDS 35.0%
!! AGAGCTGTTGATTTCATGTA+TGG + chr3.3:21116894-21116913 MS.gene46779:CDS 35.0%
!! CAATGAAAAAGTGTCACCAA+TGG - chr3.3:21116092-21116111 None:intergenic 35.0%
!! CTGTTGATTTCATGTATGGA+TGG + chr3.3:21116898-21116917 MS.gene46779:CDS 35.0%
!! GTGAAAGTATCCCATATACT+TGG - chr3.3:21115283-21115302 None:intergenic 35.0%
!!! CATTGGTGACACTTTTTCAT+TGG + chr3.3:21116090-21116109 MS.gene46779:CDS 35.0%
!!! GTTTTAGAAGATGAGTATGG+TGG + chr3.3:21116125-21116144 MS.gene46779:CDS 35.0%
AAACAATACTCCCCTCATGT+TGG + chr3.3:21118633-21118652 MS.gene46779:intron 40.0%
AAGGTATACCTTCCAACATG+AGG - chr3.3:21118648-21118667 None:intergenic 40.0%
ACATGTGCAGGAAACTCAAA+AGG + chr3.3:21116794-21116813 MS.gene46779:intron 40.0%
ACCTTGCCTGTCATACATAA+AGG - chr3.3:21117973-21117992 None:intergenic 40.0%
ACGAGAAAATTTCTGCGTTG+TGG + chr3.3:21118108-21118127 MS.gene46779:intron 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr3.3:21115795-21115814 None:intergenic 40.0%
AGAAGATCACGAATTCCTCT+CGG - chr3.3:21117588-21117607 None:intergenic 40.0%
AGCAAAGTTCAGCATAGTCT+TGG - chr3.3:21116396-21116415 None:intergenic 40.0%
AGGTATACCTTCCAACATGA+GGG - chr3.3:21118647-21118666 None:intergenic 40.0%
AGGTCCTATTCAACCGAAAA+GGG + chr3.3:21118256-21118275 MS.gene46779:intron 40.0%
AGTAGAAACAGTTTCCCCAA+AGG + chr3.3:21114949-21114968 MS.gene46779:CDS 40.0%
AGTGGTGGCATAAATCAAGA+AGG + chr3.3:21115922-21115941 MS.gene46779:CDS 40.0%
ATAGAAGGAAAGCTTAGTGG+TGG + chr3.3:21115907-21115926 MS.gene46779:intron 40.0%
CAAAAGCAATTAGGCAGAGA+AGG - chr3.3:21114852-21114871 None:intergenic 40.0%
CATACAGATTCTCCTTATCC+TGG + chr3.3:21115774-21115793 MS.gene46779:CDS 40.0%
CATGTGCAGGAAACTCAAAA+GGG + chr3.3:21116795-21116814 MS.gene46779:intron 40.0%
CCATGGAGTTACAGTCAAAA+TGG + chr3.3:21116463-21116482 MS.gene46779:CDS 40.0%
GCACAAGTGCAAAAGCAATT+AGG - chr3.3:21114861-21114880 None:intergenic 40.0%
GGGTGTAATAGGTATAACCT+TGG + chr3.3:21116815-21116834 MS.gene46779:CDS 40.0%
GGTCTAGCATTGCTTAGAAA+TGG - chr3.3:21117278-21117297 None:intergenic 40.0%
GTACAGTGATCCTACACTAT+CGG + chr3.3:21117797-21117816 MS.gene46779:CDS 40.0%
GTGGTAGAACACCAAGTATA+TGG + chr3.3:21115269-21115288 MS.gene46779:CDS 40.0%
TCCTTTATGTATGACAGGCA+AGG + chr3.3:21117969-21117988 MS.gene46779:intron 40.0%
TGGTAATCTTGCTCCAACAA+GGG - chr3.3:21117165-21117184 None:intergenic 40.0%
TGGTTGAATCCAAATTGCAC+CGG + chr3.3:21116526-21116545 MS.gene46779:CDS 40.0%
TGGTTGTATGTTTATCCGAG+AGG + chr3.3:21117570-21117589 MS.gene46779:CDS 40.0%
TTTATGGATCCACTGACAAC+AGG + chr3.3:21117116-21117135 MS.gene46779:CDS 40.0%
! AAAAGCATGAGATCCCTTGT+TGG + chr3.3:21117149-21117168 MS.gene46779:CDS 40.0%
! ACAAGGGATCTCATGCTTTT+TGG - chr3.3:21117149-21117168 None:intergenic 40.0%
! CACATGTTGAAGTACTCGAA+CGG - chr3.3:21118682-21118701 None:intergenic 40.0%
! CATTCCCTTTTCGGTTGAAT+AGG - chr3.3:21118263-21118282 None:intergenic 40.0%
! CGGGTTATTGTACTTTTCCT+TGG - chr3.3:21117619-21117638 None:intergenic 40.0%
! GACAATTTTGAATGGTGCTC+AGG + chr3.3:21118029-21118048 MS.gene46779:CDS 40.0%
! GGGTTACTTTGAATGAACCA+TGG + chr3.3:21116446-21116465 MS.gene46779:CDS 40.0%
! GTATAACCTTGGTAGCTAAC+TGG + chr3.3:21116826-21116845 MS.gene46779:CDS 40.0%
! TCAGATTTGGAATCTGAGAG+TGG - chr3.3:21116858-21116877 None:intergenic 40.0%
! TGGTAGTGCGTGACAATATA+GGG - chr3.3:21116571-21116590 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG - chr3.3:21117166-21117185 None:intergenic 40.0%
! TTTGAAGGTGCAGCAAATGA+AGG + chr3.3:21115247-21115266 MS.gene46779:CDS 40.0%
!! TTGGTAGTGCGTGACAATAT+AGG - chr3.3:21116572-21116591 None:intergenic 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG - chr3.3:21116466-21116485 None:intergenic 40.0%
AACCAACTAGAACAACGACC+TGG - chr3.3:21116511-21116530 None:intergenic 45.0%
AAGTACTCGAACGGAACACT+AGG - chr3.3:21118673-21118692 None:intergenic 45.0%
AAGTGTCCATGAGCGATTCT+TGG - chr3.3:21117824-21117843 None:intergenic 45.0%
AATACTCCCCTCATGTTGGA+AGG + chr3.3:21118637-21118656 MS.gene46779:intron 45.0%
CAAGTACCAGTTAGCTACCA+AGG - chr3.3:21116835-21116854 None:intergenic 45.0%
CTTCGGCATGAGCTAAAAGT+TGG - chr3.3:21116591-21116610 None:intergenic 45.0%
CTTGTACACATTGACGGCTT+CGG - chr3.3:21116608-21116627 None:intergenic 45.0%
GACAATATAGGGCTCAATCG+CGG - chr3.3:21116560-21116579 None:intergenic 45.0%
GAGCGAAATGGGAAACCTAT+TGG + chr3.3:21117440-21117459 MS.gene46779:CDS 45.0%
GAGGTCCTATTCAACCGAAA+AGG + chr3.3:21118255-21118274 MS.gene46779:intron 45.0%
GATTCTTGGACCGATAGTGT+AGG - chr3.3:21117810-21117829 None:intergenic 45.0%
GCTTAGAAATGGTGCATCTG+AGG - chr3.3:21117267-21117286 None:intergenic 45.0%
GGATAATCTCCTGTTGTCAG+TGG - chr3.3:21117128-21117147 None:intergenic 45.0%
GGTATACCTTCCAACATGAG+GGG - chr3.3:21118646-21118665 None:intergenic 45.0%
TGGCTATGCAAATGGACGAA+TGG + chr3.3:21116483-21116502 MS.gene46779:CDS 45.0%
TTGAATCCAAATTGCACCGG+TGG + chr3.3:21116529-21116548 MS.gene46779:CDS 45.0%
AGCAGGATCTTCCTCATACC+AGG + chr3.3:21114984-21115003 MS.gene46779:CDS 50.0%
AGGCAAGGTGCAAATGTCCA+AGG + chr3.3:21117984-21118003 MS.gene46779:intron 50.0%
ATCGGTCCAAGAATCGCTCA+TGG + chr3.3:21117815-21117834 MS.gene46779:CDS 50.0%
CACCAGGTCGTTGTTCTAGT+TGG + chr3.3:21116506-21116525 MS.gene46779:CDS 50.0%
GAATCACCACCGGTGCAATT+TGG - chr3.3:21116538-21116557 None:intergenic 50.0%
GGTTTCCCATTTCGCTCAAC+TGG - chr3.3:21117437-21117456 None:intergenic 50.0%
TCGAACGGAACACTAGGACA+AGG - chr3.3:21118667-21118686 None:intergenic 50.0%
! GAAGGTGCAGCAAATGAAGG+TGG + chr3.3:21115250-21115269 MS.gene46779:CDS 50.0%
CTCAATCGCGGAATCACCAC+CGG - chr3.3:21116548-21116567 None:intergenic 55.0%
GCAAATGGACGAATGGCACC+AGG + chr3.3:21116490-21116509 MS.gene46779:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 21114835 21118702 21114835 ID=MS.gene46779
chr3.3 mRNA 21114835 21118702 21114835 ID=MS.gene46779.t1;Parent=MS.gene46779
chr3.3 exon 21114835 21115005 21114835 ID=MS.gene46779.t1.exon1;Parent=MS.gene46779.t1
chr3.3 CDS 21114835 21115005 21114835 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21115247 21115316 21115247 ID=MS.gene46779.t1.exon2;Parent=MS.gene46779.t1
chr3.3 CDS 21115247 21115316 21115247 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21115434 21115492 21115434 ID=MS.gene46779.t1.exon3;Parent=MS.gene46779.t1
chr3.3 CDS 21115434 21115492 21115434 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21115737 21115812 21115737 ID=MS.gene46779.t1.exon4;Parent=MS.gene46779.t1
chr3.3 CDS 21115737 21115812 21115737 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21115911 21115988 21115911 ID=MS.gene46779.t1.exon5;Parent=MS.gene46779.t1
chr3.3 CDS 21115911 21115988 21115911 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21116081 21116168 21116081 ID=MS.gene46779.t1.exon6;Parent=MS.gene46779.t1
chr3.3 CDS 21116081 21116168 21116081 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21116384 21116639 21116384 ID=MS.gene46779.t1.exon7;Parent=MS.gene46779.t1
chr3.3 CDS 21116384 21116639 21116384 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21116804 21116919 21116804 ID=MS.gene46779.t1.exon8;Parent=MS.gene46779.t1
chr3.3 CDS 21116804 21116919 21116804 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21117115 21117332 21117115 ID=MS.gene46779.t1.exon9;Parent=MS.gene46779.t1
chr3.3 CDS 21117115 21117332 21117115 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21117438 21117469 21117438 ID=MS.gene46779.t1.exon10;Parent=MS.gene46779.t1
chr3.3 CDS 21117438 21117469 21117438 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21117558 21117660 21117558 ID=MS.gene46779.t1.exon11;Parent=MS.gene46779.t1
chr3.3 CDS 21117558 21117660 21117558 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21117787 21117895 21117787 ID=MS.gene46779.t1.exon12;Parent=MS.gene46779.t1
chr3.3 CDS 21117787 21117895 21117787 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21117986 21118095 21117986 ID=MS.gene46779.t1.exon13;Parent=MS.gene46779.t1
chr3.3 CDS 21117986 21118095 21117986 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
chr3.3 exon 21118659 21118702 21118659 ID=MS.gene46779.t1.exon14;Parent=MS.gene46779.t1
chr3.3 CDS 21118659 21118702 21118659 ID=cds.MS.gene46779.t1;Parent=MS.gene46779.t1
Gene Sequence

>MS.gene46779

ATGACATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACTATTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCCAAAGGATTTATATTTGGAGCAGGATCTTCCTCATACCAGGTAATTAATTACTCCAATTTGATGATTTAAAATGAGTTCTAATACAACAAACTTAGAAACTAAAATTAAAAGAAATTCTTACTAGATTTAGTGAGAAAATTAAATAATTTTTTCTAATAATATATGATATATCAAAGCAATTTTTTTAAAAAAATAATAATAATTTTACATATTATATAAACATATAATCTTGATTATATATTGTGTGTTTCTGACATGAATGTAATTTATTTATGATTAGTTTGAAGGTGCAGCAAATGAAGGTGGTAGAACACCAAGTATATGGGATACTTTCACCCATAAATATCCAGGTATATATATAAAATTTAAATTTTTCTTTTCTTATTACTAAAGATTTACAATTTTCAATTTGATATTTTTCATGTGCATAATAATTTACAATTTGTGCAACTTTAATTGACATGCAGAAAAGATCAAAGATAGAAGCAATGCAGATGTAGCCATTGATTCCTATCACAACTACAAGGTAAACTAGCTTCAAAGTATATATTTGTGTTTTCTTACTAAAAAAAAGTTGAATCTAAAATTTAAGTAATTGAATAATAAATTATGAGATGAAAAAAGTGCATTACACTTATATCTAAGGGAATTCTTTCTATTTTAGTTATTTATAAAGAAAAGTAATGAATAAAAATTAAATAAAAGTAATATTGATTTTGTGTTTAGGTGAAATAAAATAATTAATATATTGTTGTTCATATATATTATAGGAAGATGTTAGAATCATCAAGGATATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAGTAAGTTTAATATTGATAAATTGCAACAATTTTTTTCTTCATCTTATTGAAAATTTTAATCTAATTAACAATTTTTTTTAACTATTTATCCATAATAGAAGGAAAGCTTAGTGGTGGCATAAATCAAGAAGGAATCAACTATTACAATAATTTCATCAACGAGTTATTGGCTAATGGTAAGATCTTGAAATTCAATGTTTATTTCAATTTGACTATATTACCCTATATTTTGTTGTTGATGATCATAATAAATTGTCAATAATTTTAGGTATAAAACCATTGGTGACACTTTTTCATTGGGATCTCCCACAAGTTTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCTCATAGTGTGAGTTTCTAAAACAATAGCTTAATGTTTTCTTAGAAAATACTCCCTCCTGTCTTATTTATAAGAGACATTTGTGTCAACAAAAGTTGATGTATTGATCCAATTTTTAACCAGATACATCAATTTTTGTTGATCTAAATTTCTCTTATAAATATGACCGAATGAAGTAAAATATATATCAAGATATGATTGTAACTTTTGTTTCCATTTTTCAGAAAAGATTTCCAAGACTATGCTGAACTTTGCTTTAAGGAATTTGGTGATAGAGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACGAATGGCACCAGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGCACCGGTGGTGATTCCGCGATTGAGCCCTATATTGTCACGCACTACCAACTTTTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGTATGTTACTTTGTTGATAATCTTATACCTCAAACAATTGTTAGACTTTTGTCATATAAAGTATCAATGAGTAGATAATTTATCGACAACGGTTTCTTTATATTTCTATTTAAAGACATTAAACGGTAACGAAAAACTAAAATATTTATATGTTACATGTGCAGGAAACTCAAAAGGGTGTAATAGGTATAACCTTGGTAGCTAACTGGTACTTGCCACTCTCAGATTCCAAATCTGATCAAAAAGCTGCTGAAAGAGCTGTTGATTTCATGTATGGATGGTAAGAGCTTCTCTTTCCCTCACACTTTTTGATTTATTTTCAAAATGTAAATACATATTTTGATTTTAAAAAGCAAAAAATCATGGATTAATATTAGGACTATGGTTTATAGACATTTCTAGGTCATATATTTTTCGTGATATGGTTAAATGAATTTATGGACAAAATATTGAATCAAAAGTTGATTGATTTCAGGTTTATGGATCCACTGACAACAGGAGATTATCCAAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAATCTAAGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACTTATGCCTCAGATGCACCATTTCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCAGCATGTAAGAAACTAATTTCTACCATTCTATGAGTTCTCTTACTATTTATATAAATTGAGTTAAAGATTTTGACATTTGCATATCTTTTCTATTTGTGGTTAATTCCAGTTGAGCGAAATGGGAAACCTATTGGTATTAAGGTACGTCATATCGACCTTTCTTCTAACGATTTTGCTGGTTTGATTCGTTTCTAAAATATAAAACTAATGTGCTTTTATAATTATGCAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTCTGTTATACACCAAGGAAAAGTACAATAACCCGTTGATTTACATCACTGAAAATGGTAATAACACCTAACTATATATCATATTTAGTTTGCTTAAATCTAGCATTTTAAATCTTTATATGTGATTTTTAAACTTGTTGAATCAAAGATGTATGACAATTGACGTGCATAATTTACTTATAGGTATTAACGAGTACAGTGATCCTACACTATCGGTCCAAGAATCGCTCATGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGTAAGTAGTCTCTTACATCTCTAAAAGGTTTCTCTATTTTCGCCAATCAATTTAACGATGTTCTAAACCATTTTCCTTTATGTATGACAGGCAAGGTGCAAATGTCCAAGGATATTACATATGGTCCTTGTTCGACAATTTTGAATGGTGCTCAGGTTATTCAGTGAGATTTGGAATGACCTTTGTAGATTACAAGAATGGTTTGAAAAGATACGAGAAAATTTCTGCGTTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATTAGTTTTATTCATTAAAAAATTTATTAGTAGATATTTATTTATTCTTTATTCATTATTTTGTTCTAAAGAGGTCCTATTCAACCGAAAAGGGAATGAAAAATGGATGTGTAGATATACTGATCTTGTAAGTTGTTACTATTGATTCAATTTTAGAATCAAGGAAAATTGTAGTTGTTATGATAAATATATGAATTACAGTTATTCATATTTGATTAACTTTTCGACTTATAATTTTTTCCATCGTACGAAAGTTAAAGAAAATACAACTTATTATGTCGTAGTTATTGATTGAAAAGTTAGAGGATACAAGGAACTACAAATACTATAAATGAATCATTTAATAAAAAAAACATGTTAAAAAACATGTTTTCTAAATTGGTTGAGAGTTGAGACTGCAAAATGCATTTTTCATTATGATCAACTGAATTGTACAACAATTACTCTTAAACAATACTCCCCTCATGTTGGAAGGTATACCTTGTCCTAGTGTTCCGTTCGAGTACTTCAACATGTGA

Protein sequence

>MS.gene46779.t1

MTFNYLLCLIAFALVLSKTNVNCIETIEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEGGRTPSIWDTFTHKYPEKIKDRSNADVAIDSYHNYKEDVRIIKDMNLDSYRFSLSWSRILPKGKLSGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQVLEDEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQETQKGVIGITLVANWYLPLSDSKSDQKAAERAVDFMYGWFMDPLTTGDYPKSMRSLVGARLPKFNAKQSKLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVDYKNGIPCPSVPFEYFNM