AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35105


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35105.t1 MTR_4g094492 95.203 542 26 0 1 542 1 542 0.0 1051
MS.gene35105.t1 MTR_4g094488 79.487 546 105 3 1 542 1 543 0.0 874
MS.gene35105.t1 MTR_4g094495 79.781 549 101 5 1 542 1 546 0.0 872
MS.gene35105.t1 MTR_4g094478 78.293 539 112 2 1 537 1 536 0.0 857
MS.gene35105.t1 MTR_4g094480 77.022 544 120 2 1 542 1 541 0.0 850
MS.gene35105.t1 MTR_4g094418 70.776 438 120 3 104 536 1 435 0.0 650
MS.gene35105.t1 MTR_2g031560 51.613 527 244 5 13 536 5 523 0.0 572
MS.gene35105.t1 MTR_2g031390 52.052 536 241 8 5 536 6 529 0.0 570
MS.gene35105.t1 MTR_3g009880 54.924 528 224 9 12 536 4 520 0.0 559
MS.gene35105.t1 MTR_3g009760 53.545 536 229 9 6 536 2 522 0.0 557
MS.gene35105.t1 MTR_3g009820 52.897 535 234 8 6 536 2 522 0.0 551
MS.gene35105.t1 MTR_2g031420 53.371 534 236 6 6 536 4 527 0.0 551
MS.gene35105.t1 MTR_4g094520 51.887 530 245 6 10 536 10 532 0.0 548
MS.gene35105.t1 MTR_2g031460 53.933 534 233 6 6 536 4 527 0.0 546
MS.gene35105.t1 MTR_4g094498 55.578 502 215 5 35 536 41 534 0.0 545
MS.gene35105.t1 MTR_2g031590 52.134 539 247 5 2 536 1 532 0.0 545
MS.gene35105.t1 MTR_4g094518 53.996 513 220 8 30 536 28 530 0.0 531
MS.gene35105.t1 MTR_2g031490 51.111 540 251 9 3 536 6 538 2.30e-179 516
MS.gene35105.t1 MTR_4g091150 51.772 508 239 4 31 536 37 540 1.92e-176 509
MS.gene35105.t1 MTR_2g031510 49.904 519 249 6 26 540 33 544 8.08e-173 499
MS.gene35105.t1 MTR_4g057990 49.621 528 256 7 8 535 4 521 2.47e-170 492
MS.gene35105.t1 MTR_4g094515 49.440 536 262 5 7 539 624 1153 1.32e-169 511
MS.gene35105.t1 MTR_4g094515 50.197 508 242 7 32 535 39 539 1.09e-166 503
MS.gene35105.t1 MTR_4g091200 47.925 530 262 5 7 535 9 525 4.69e-169 489
MS.gene35105.t1 MTR_6g017205 48.204 529 261 5 10 537 11 527 4.73e-169 490
MS.gene35105.t1 MTR_4g088355 49.119 511 255 3 32 541 32 538 7.32e-168 487
MS.gene35105.t1 MTR_4g091190 48.728 511 253 5 32 541 31 533 1.41e-164 478
MS.gene35105.t1 MTR_4g091170 46.767 464 223 3 73 535 101 541 1.36e-153 451
MS.gene35105.t1 MTR_2g023590 48.188 469 235 4 68 535 4 465 5.32e-147 431
MS.gene35105.t1 MTR_1g076830 43.659 481 261 7 57 533 58 532 2.25e-126 381
MS.gene35105.t1 MTR_2g031600 58.943 246 99 1 1 246 1 244 1.36e-87 276
MS.gene35105.t1 MTR_2g031600 51.572 159 74 2 378 536 245 400 3.31e-50 178
MS.gene35105.t1 MTR_3g009850 58.696 230 88 5 308 536 5 228 2.64e-84 261
MS.gene35105.t1 MTR_2g084370 47.748 111 36 2 128 238 1 89 3.79e-31 116
MS.gene35105.t1 MTR_2g084405 53.750 80 37 0 128 207 1 80 3.46e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35105.t1 AT5G44400 49.907 539 251 9 10 537 7 537 0.0 526
MS.gene35105.t1 AT5G44440 50.464 539 249 7 2 534 1 527 0.0 523
MS.gene35105.t1 AT5G44440 50.464 539 249 7 2 534 71 597 0.0 522
MS.gene35105.t1 AT4G20820 48.885 538 256 6 2 534 1 524 0.0 521
MS.gene35105.t1 AT2G34790 48.757 523 250 9 21 537 21 531 2.34e-180 518
MS.gene35105.t1 AT5G44360 48.807 545 257 10 1 537 1 531 5.43e-175 504
MS.gene35105.t1 AT5G44360 48.807 545 257 10 1 537 17 547 5.76e-175 505
MS.gene35105.t1 AT5G44410 49.534 537 248 8 4 534 8 527 1.47e-174 504
MS.gene35105.t1 AT5G44390 46.863 542 273 9 3 536 6 540 3.38e-174 503
MS.gene35105.t1 AT1G30760 48.837 516 244 9 27 535 29 531 2.76e-171 495
MS.gene35105.t1 AT1G30760 48.837 516 244 9 27 535 47 549 4.22e-171 495
MS.gene35105.t1 AT5G44380 49.630 540 260 7 2 536 7 539 1.62e-168 488
MS.gene35105.t1 AT4G20860 49.126 515 243 10 30 536 26 529 1.94e-168 488
MS.gene35105.t1 AT5G44380 49.630 540 260 7 2 536 47 579 3.41e-168 489
MS.gene35105.t1 AT1G30730 47.826 529 262 6 8 534 7 523 1.42e-166 483
MS.gene35105.t1 AT1G11770 48.633 512 251 7 28 536 27 529 5.31e-166 482
MS.gene35105.t1 AT1G30700 47.932 532 264 6 8 536 5 526 7.26e-164 476
MS.gene35105.t1 AT1G26420 47.015 536 266 9 4 534 1 523 1.20e-163 476
MS.gene35105.t1 AT1G26380 47.378 534 264 8 11 539 7 528 2.78e-162 472
MS.gene35105.t1 AT4G20840 46.394 513 263 7 31 540 36 539 3.78e-160 467
MS.gene35105.t1 AT1G30720 49.008 504 247 5 33 534 29 524 2.09e-158 462
MS.gene35105.t1 AT1G26400 45.572 542 265 9 1 533 1 521 2.33e-157 459
MS.gene35105.t1 AT1G26410 47.628 506 254 8 33 536 53 549 7.72e-157 459
MS.gene35105.t1 AT1G30710 46.182 537 262 11 8 536 11 528 8.59e-157 458
MS.gene35105.t1 AT1G34575 47.961 515 247 10 30 539 29 527 2.07e-156 457
MS.gene35105.t1 AT1G26390 47.921 505 254 5 32 534 28 525 1.16e-155 455
MS.gene35105.t1 AT4G20800 46.032 504 265 4 31 534 27 523 1.37e-154 452
MS.gene35105.t1 AT4G20830 46.911 518 263 7 26 540 32 540 1.99e-152 447
MS.gene35105.t1 AT1G01980 46.212 528 266 11 20 539 20 537 3.01e-152 447
MS.gene35105.t1 AT4G20830 47.082 514 260 7 26 536 32 536 1.29e-151 446
MS.gene35105.t1 AT1G30740 45.810 537 272 10 12 538 3 530 1.83e-148 437
MS.gene35105.t1 AT1G30740 45.810 537 272 10 12 538 6 533 2.17e-148 437
MS.gene35105.t1 AT2G34810 44.706 510 275 4 31 536 33 539 1.77e-142 422

Find 113 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTGGAGGCCATGATTT+TGG 0.130838 4.4:+19890167 None:intergenic
AAATTATGGCTGTTTGAATA+TGG 0.187785 4.4:+19890194 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4.4:-19888980 MS.gene35105:CDS
CGCCTTTCGGAAATTGAAAA+AGG 0.237346 4.4:+19889420 None:intergenic
AAAACTCCTATTCCTGAAAA+TGG 0.251375 4.4:-19889317 MS.gene35105:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4.4:-19889805 MS.gene35105:CDS
GGTGGTGGAGGAGCAAGTTT+TGG 0.291186 4.4:-19889773 MS.gene35105:CDS
ATATTTCAATCCTTGTTTCT+TGG 0.298323 4.4:-19889545 MS.gene35105:CDS
GTTTCAAAGTCTCCAAGAAT+TGG 0.300797 4.4:-19889059 MS.gene35105:CDS
GTGAGCATCAATTATATTAT+CGG 0.307370 4.4:+19889865 None:intergenic
TTTGCTTTGTAAATAAATCT+TGG 0.313472 4.4:+19889353 None:intergenic
GTTTCCTTATGGTGGAATAA+TGG 0.315442 4.4:-19889234 MS.gene35105:CDS
GGAACCTTGGTTCGTAAATA+TGG 0.319156 4.4:-19889896 MS.gene35105:CDS
CCTTTGAAAGACAATATTGA+TGG 0.321417 4.4:+19889607 None:intergenic
AATCAACCTGGTAATGAATA+TGG 0.323880 4.4:+19889159 None:intergenic
ATTCCTGAAAATGGATTAGA+AGG 0.350473 4.4:-19889308 MS.gene35105:CDS
CCCCACTACGGGTTCGAATC+TGG 0.361159 4.4:+19890152 None:intergenic
TAGTTGATATACCCAATTCT+TGG 0.362017 4.4:+19889047 None:intergenic
CATTGATCTCGTAAACTTCA+AGG 0.362548 4.4:-19890080 MS.gene35105:CDS
ATATTCATTACCAGGTTGAT+TGG 0.363341 4.4:-19889157 MS.gene35105:CDS
TACTGGTGAGTAAGAGGAAT+TGG 0.365636 4.4:+19890300 None:intergenic
TTGCTTTGTAAATAAATCTT+GGG 0.367450 4.4:+19889354 None:intergenic
ATTAATTTATTTGTGTCCCT+TGG 0.367735 4.4:+19888851 None:intergenic
AACTATAGAGACCTTGATAT+TGG 0.379359 4.4:-19889029 MS.gene35105:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4.4:-19888943 MS.gene35105:CDS
CCATATCATCATTGCACCTT+TGG 0.387821 4.4:+19889256 None:intergenic
CTTGGAGACTTTGAAACAAA+AGG 0.388823 4.4:+19889065 None:intergenic
CAGCTGGGAAACCGAGATTT+CGG 0.397206 4.4:+19889969 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4.4:-19888979 MS.gene35105:CDS
CCAAAGGTGCAATGATGATA+TGG 0.399938 4.4:-19889256 MS.gene35105:CDS
ACTTCAGGCAATGCGCCTTT+CGG 0.404901 4.4:+19889407 None:intergenic
GTAAACACCGTCACAGTTGA+TGG 0.407633 4.4:+19889713 None:intergenic
AATTATGGCTGTTTGAATAT+GGG 0.408415 4.4:+19890195 None:intergenic
TTTCAAAGTCTCCAAGAATT+GGG 0.412921 4.4:-19889058 MS.gene35105:CDS
AAAATGGATTAGAAGGAATA+TGG 0.414702 4.4:-19889301 MS.gene35105:CDS
TTAATTTATTTGTGTCCCTT+GGG 0.415606 4.4:+19888852 None:intergenic
AAAATTGTATTGAAATGAGT+TGG 0.420053 4.4:-19889460 MS.gene35105:CDS
AGATAAACTCATTCCCTTGA+TGG 0.422488 4.4:-19889516 MS.gene35105:CDS
TTTCAATCCTTGTTTCTTGG+AGG 0.424294 4.4:-19889542 MS.gene35105:CDS
ACGAGATCAATGACAACAAA+TGG 0.429670 4.4:+19890091 None:intergenic
GTGATGATGACAAGTGGTTT+AGG 0.431669 4.4:+19890232 None:intergenic
ATGATGATATGGTTTCCTTA+TGG 0.438370 4.4:-19889245 MS.gene35105:CDS
ATTCCATTTCCTCATAGAAA+AGG 0.440912 4.4:-19889191 MS.gene35105:CDS
GCTGGTGCTTGTCCTACAAT+AGG 0.442267 4.4:-19889950 MS.gene35105:CDS
AAATGGAACTTCTGAAACAT+AGG 0.442493 4.4:+19890108 None:intergenic
GTTCTGTTAAGCAACACTTC+AGG 0.449144 4.4:+19889392 None:intergenic
TGAAATGAGTTGGATTGAAT+CGG 0.452927 4.4:-19889450 MS.gene35105:CDS
ATAGACAAGTATGAGCTTAG+AGG 0.453895 4.4:+19890457 None:intergenic
CACTTCAGTGGTGGTGGCTA+TGG 0.458500 4.4:-19889917 MS.gene35105:CDS
TGAGTAAGAGGAATTGGTTT+TGG 0.462718 4.4:+19890306 None:intergenic
TTTGAGTACTGGTGAGTAAG+AGG 0.466502 4.4:+19890294 None:intergenic
TCCAGATTCGAACCCGTAGT+GGG 0.475163 4.4:-19890153 MS.gene35105:CDS
TTACCAGGTTGATTGGCAAC+AGG 0.475690 4.4:-19889150 MS.gene35105:CDS
ATAATTTGTTCCCAAAATCA+TGG 0.478899 4.4:-19890178 MS.gene35105:CDS
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4.4:+19888908 None:intergenic
TGTAGAAAGCAAAACTGCTT+GGG 0.483507 4.4:-19890044 MS.gene35105:CDS
TGGTCTTTGTTTCATGAAGA+TGG 0.483871 4.4:-19889281 MS.gene35105:CDS
TGAGTTGTATATTTGAGTAC+TGG 0.484352 4.4:+19890283 None:intergenic
GAACAAAAGTTTCCTGAGTT+GGG 0.486919 4.4:-19889494 MS.gene35105:CDS
CGAAATCTCGGTTTCCCAGC+TGG 0.487820 4.4:-19889968 MS.gene35105:CDS
TGTCCACCAACACCTATTGT+AGG 0.487897 4.4:+19889938 None:intergenic
AAAACTGCTTGGGTTCAGTC+TGG 0.489702 4.4:-19890034 MS.gene35105:CDS
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4.4:-19889785 MS.gene35105:CDS
ATTGGTGTGAATAACATTGA+TGG 0.497447 4.4:-19889011 MS.gene35105:CDS
GTTTACTGTTGCAAAAGCAT+TGG 0.502433 4.4:-19889696 MS.gene35105:CDS
GTATCCATTATTCCACCATA+AGG 0.507512 4.4:+19889230 None:intergenic
ATTGTAGGACAAGCACCAGC+TGG 0.507999 4.4:+19889953 None:intergenic
CTTCCTGTTGCCAATCAACC+TGG 0.513010 4.4:+19889147 None:intergenic
TGTCCCTTGGGCACAAGAGA+AGG 0.516026 4.4:+19888864 None:intergenic
ATGTAGAAAGCAAAACTGCT+TGG 0.516128 4.4:-19890045 MS.gene35105:CDS
GGAACAAAAGTTTCCTGAGT+TGG 0.517366 4.4:-19889495 MS.gene35105:CDS
TCTCTAACCACACCCAACTC+AGG 0.530976 4.4:+19889482 None:intergenic
AATAACTAGAAAGACATTGA+AGG 0.537999 4.4:+19890365 None:intergenic
GTTCAGTCTGGTGCAACACT+TGG 0.538464 4.4:-19890022 MS.gene35105:CDS
TGTTATTCACACCAATATCA+AGG 0.539812 4.4:+19889018 None:intergenic
CTCCAGATTCGAACCCGTAG+TGG 0.540664 4.4:-19890154 MS.gene35105:CDS
TTTATACCATATTCATTACC+AGG 0.548049 4.4:-19889165 MS.gene35105:CDS
TTTCTTGACAGACAAGCAAT+GGG 0.551117 4.4:-19889821 MS.gene35105:CDS
CCATCAATATTGTCTTTCAA+AGG 0.551890 4.4:-19889607 MS.gene35105:CDS
GTTTCTTGACAGACAAGCAA+TGG 0.552283 4.4:-19889822 MS.gene35105:CDS
AAAGTTTCCTGAGTTGGGTG+TGG 0.552427 4.4:-19889489 MS.gene35105:CDS
TATACCTTCTCTTGTGCCCA+AGG 0.557558 4.4:-19888868 MS.gene35105:CDS
GGTGGACACTTCAGTGGTGG+TGG 0.569924 4.4:-19889923 MS.gene35105:CDS
TGTTCACAAGTGGCAGTATG+TGG 0.580228 4.4:-19889654 MS.gene35105:CDS
ATGATATGGTTTCCTTATGG+TGG 0.582909 4.4:-19889242 MS.gene35105:CDS
ATGGCTGTTTGAATATGGGA+AGG 0.583461 4.4:+19890199 None:intergenic
CTACAAAGCTTGTTCACAAG+TGG 0.585250 4.4:-19889664 MS.gene35105:CDS
TGCTCACATAATTGATGTGA+AGG 0.585552 4.4:-19889849 MS.gene35105:CDS
ATCTACACCTCCAAGAAACA+AGG 0.586811 4.4:+19889535 None:intergenic
ACATAATTGATGTGAAGGGT+AGG 0.589985 4.4:-19889844 MS.gene35105:CDS
TGTCCTACAATAGGTGTTGG+TGG 0.592774 4.4:-19889941 MS.gene35105:CDS
CCAGATTCGAACCCGTAGTG+GGG 0.593132 4.4:-19890152 MS.gene35105:CDS
GCTTGTCCTACAATAGGTGT+TGG 0.602006 4.4:-19889944 MS.gene35105:CDS
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4.4:-19888978 MS.gene35105:CDS
TGGTGGTGGCTATGGAACCT+TGG 0.603059 4.4:-19889909 MS.gene35105:CDS
TTGTAGGACAAGCACCAGCT+GGG 0.603228 4.4:+19889954 None:intergenic
TGAATATGGGAAGGTTCTAG+AGG 0.607797 4.4:+19890208 None:intergenic
CAGGTTGATTGGCAACAGGA+AGG 0.608073 4.4:-19889146 MS.gene35105:CDS
AGGATAGACCCTCAAAGTCA+TGG 0.608222 4.4:+19890128 None:intergenic
CAGATTCGAACCCGTAGTGG+GGG 0.608743 4.4:-19890151 MS.gene35105:CDS
GCAACAGGAAGGTGATGAGG+TGG 0.620727 4.4:-19889135 MS.gene35105:CDS
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4.4:-19889720 MS.gene35105:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.625730 4.4:-19889926 MS.gene35105:CDS
TTTCATGAAGATGGTGCCAA+AGG 0.627110 4.4:-19889272 MS.gene35105:CDS
AAGTGGTTTAGGTGTTGTGT+AGG 0.631140 4.4:+19890243 None:intergenic
AAGACCATATTTACGAACCA+AGG 0.633836 4.4:+19889892 None:intergenic
ATACCTTCTCTTGTGCCCAA+GGG 0.635419 4.4:-19888867 MS.gene35105:CDS
CACTACGGGTTCGAATCTGG+AGG 0.666507 4.4:+19890155 None:intergenic
GGTGTTGGTGGACACTTCAG+TGG 0.668243 4.4:-19889929 MS.gene35105:CDS
GCTCACATAATTGATGTGAA+GGG 0.694549 4.4:-19889848 MS.gene35105:CDS
AGAGGTGTGATGATGACAAG+TGG 0.700893 4.4:+19890226 None:intergenic
AGTGTTGCTTAACAGAACAC+TGG 0.704218 4.4:-19889387 MS.gene35105:CDS
TTGGCAACAGGAAGGTGATG+AGG 0.705230 4.4:-19889138 MS.gene35105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAATTTATAATTACA+TGG - chr4.4:19890230-19890249 MS.gene35105:CDS 10.0%
!! AAAATTGTATTGAAATGAGT+TGG - chr4.4:19889860-19889879 MS.gene35105:CDS 20.0%
!! AGGATAAATTCAAGTAAAAA+AGG - chr4.4:19889733-19889752 MS.gene35105:CDS 20.0%
!! TTGCTTTGTAAATAAATCTT+GGG + chr4.4:19889969-19889988 None:intergenic 20.0%
!! TTTGCTTTGTAAATAAATCT+TGG + chr4.4:19889970-19889989 None:intergenic 20.0%
!!! TATAAATTTCCTTTTCTATG+AGG + chr4.4:19890141-19890160 None:intergenic 20.0%
! AAATTATGGCTGTTTGAATA+TGG + chr4.4:19889129-19889148 None:intergenic 25.0%
! AATAACTAGAAAGACATTGA+AGG + chr4.4:19888958-19888977 None:intergenic 25.0%
! AATTATGGCTGTTTGAATAT+GGG + chr4.4:19889128-19889147 None:intergenic 25.0%
! GTGAGCATCAATTATATTAT+CGG + chr4.4:19889458-19889477 None:intergenic 25.0%
! TTTATACCATATTCATTACC+AGG - chr4.4:19890155-19890174 MS.gene35105:CDS 25.0%
!! ATATTTCAATCCTTGTTTCT+TGG - chr4.4:19889775-19889794 MS.gene35105:CDS 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG + chr4.4:19890426-19890445 None:intergenic 25.0%
!!! AAAATGGATTAGAAGGAATA+TGG - chr4.4:19890019-19890038 MS.gene35105:CDS 25.0%
!!! ATAATTTGTTCCCAAAATCA+TGG - chr4.4:19889142-19889161 MS.gene35105:CDS 25.0%
!!! ATGATTTTGGGAACAAATTA+TGG + chr4.4:19889143-19889162 None:intergenic 25.0%
AAAACTCCTATTCCTGAAAA+TGG - chr4.4:19890003-19890022 MS.gene35105:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG + chr4.4:19890415-19890434 None:intergenic 30.0%
AACTATAGAGACCTTGATAT+TGG - chr4.4:19890291-19890310 MS.gene35105:CDS 30.0%
ATGATGATATGGTTTCCTTA+TGG - chr4.4:19890075-19890094 MS.gene35105:CDS 30.0%
ATTCCATTTCCTCATAGAAA+AGG - chr4.4:19890129-19890148 MS.gene35105:CDS 30.0%
ATTGGTGTGAATAACATTGA+TGG - chr4.4:19890309-19890328 MS.gene35105:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.4:19890377-19890396 MS.gene35105:CDS 30.0%
CCATCAATATTGTCTTTCAA+AGG - chr4.4:19889713-19889732 MS.gene35105:CDS 30.0%
TGAGTTGTATATTTGAGTAC+TGG + chr4.4:19889040-19889059 None:intergenic 30.0%
TGGAAAAACTGCACATTAAT+TGG - chr4.4:19890205-19890224 MS.gene35105:CDS 30.0%
TGTTATTCACACCAATATCA+AGG + chr4.4:19890305-19890324 None:intergenic 30.0%
TTTCAAAGTCTCCAAGAATT+GGG - chr4.4:19890262-19890281 MS.gene35105:CDS 30.0%
! AATCAACCTGGTAATGAATA+TGG + chr4.4:19890164-19890183 None:intergenic 30.0%
! ATTCCTTCTAATCCATTTTC+AGG + chr4.4:19890018-19890037 None:intergenic 30.0%
! CCTTTGAAAGACAATATTGA+TGG + chr4.4:19889716-19889735 None:intergenic 30.0%
! TAGTTGATATACCCAATTCT+TGG + chr4.4:19890276-19890295 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG - chr4.4:19889870-19889889 MS.gene35105:CDS 30.0%
! TTTCCTTTTCTATGAGGAAA+TGG + chr4.4:19890135-19890154 None:intergenic 30.0%
!! AAATGGAACTTCTGAAACAT+AGG + chr4.4:19889215-19889234 None:intergenic 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG - chr4.4:19889516-19889535 MS.gene35105:CDS 30.0%
!! ATATTCATTACCAGGTTGAT+TGG - chr4.4:19890163-19890182 MS.gene35105:CDS 30.0%
!! ATTCCTGAAAATGGATTAGA+AGG - chr4.4:19890012-19890031 MS.gene35105:CDS 30.0%
!! TCTAATCCATTTTCAGGAAT+AGG + chr4.4:19890012-19890031 None:intergenic 30.0%
!!! GTTTTGGAGTCATAATTTCA+TGG - chr4.4:19889563-19889582 MS.gene35105:CDS 30.0%
!!! TACCTTTTTCAATTTCCGAA+AGG - chr4.4:19889898-19889917 MS.gene35105:CDS 30.0%
AAGACCATATTTACGAACCA+AGG + chr4.4:19889431-19889450 None:intergenic 35.0%
ACATAATTGATGTGAAGGGT+AGG - chr4.4:19889476-19889495 MS.gene35105:CDS 35.0%
ACGAGATCAATGACAACAAA+TGG + chr4.4:19889232-19889251 None:intergenic 35.0%
AGATAAACTCATTCCCTTGA+TGG - chr4.4:19889804-19889823 MS.gene35105:CDS 35.0%
ATAGACAAGTATGAGCTTAG+AGG + chr4.4:19888866-19888885 None:intergenic 35.0%
ATGATATGGTTTCCTTATGG+TGG - chr4.4:19890078-19890097 MS.gene35105:CDS 35.0%
ATGTAGAAAGCAAAACTGCT+TGG - chr4.4:19889275-19889294 MS.gene35105:CDS 35.0%
CATTGATCTCGTAAACTTCA+AGG - chr4.4:19889240-19889259 MS.gene35105:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG - chr4.4:19890341-19890360 MS.gene35105:CDS 35.0%
GAACAAAAGTTTCCTGAGTT+GGG - chr4.4:19889826-19889845 MS.gene35105:CDS 35.0%
GCTCACATAATTGATGTGAA+GGG - chr4.4:19889472-19889491 MS.gene35105:CDS 35.0%
GTATCCATTATTCCACCATA+AGG + chr4.4:19890093-19890112 None:intergenic 35.0%
GTTTCAAAGTCTCCAAGAAT+TGG - chr4.4:19890261-19890280 MS.gene35105:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG - chr4.4:19890342-19890361 MS.gene35105:CDS 35.0%
TGCTCACATAATTGATGTGA+AGG - chr4.4:19889471-19889490 MS.gene35105:CDS 35.0%
TGTAGAAAGCAAAACTGCTT+GGG - chr4.4:19889276-19889295 MS.gene35105:CDS 35.0%
TTTCTTGACAGACAAGCAAT+GGG - chr4.4:19889499-19889518 MS.gene35105:CDS 35.0%
! AGGAAACTTTTGTTCCATCA+AGG + chr4.4:19889821-19889840 None:intergenic 35.0%
! GGAAACTTTTGTTCCATCAA+GGG + chr4.4:19889820-19889839 None:intergenic 35.0%
! GTTTACTGTTGCAAAAGCAT+TGG - chr4.4:19889624-19889643 MS.gene35105:CDS 35.0%
! GTTTCCTTATGGTGGAATAA+TGG - chr4.4:19890086-19890105 MS.gene35105:CDS 35.0%
! TGGTCTTTGTTTCATGAAGA+TGG - chr4.4:19890039-19890058 MS.gene35105:CDS 35.0%
! TTTCAATCCTTGTTTCTTGG+AGG - chr4.4:19889778-19889797 MS.gene35105:CDS 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG - chr4.4:19889515-19889534 MS.gene35105:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG + chr4.4:19890258-19890277 None:intergenic 35.0%
!! TGAGTAAGAGGAATTGGTTT+TGG + chr4.4:19889017-19889036 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.4:19889526-19889545 MS.gene35105:CDS 35.0%
AGCCAAAAAAGCCGAAATCT+CGG - chr4.4:19889340-19889359 MS.gene35105:CDS 40.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.4:19889788-19889807 None:intergenic 40.0%
ATGGCTGTTTGAATATGGGA+AGG + chr4.4:19889124-19889143 None:intergenic 40.0%
CCATATCATCATTGCACCTT+TGG + chr4.4:19890067-19890086 None:intergenic 40.0%
CGCCTTTCGGAAATTGAAAA+AGG + chr4.4:19889903-19889922 None:intergenic 40.0%
GCTACAAGCAAGCTAGTATT+TGG - chr4.4:19890340-19890359 MS.gene35105:CDS 40.0%
GGAACAAAAGTTTCCTGAGT+TGG - chr4.4:19889825-19889844 MS.gene35105:CDS 40.0%
GTTCTGTTAAGCAACACTTC+AGG + chr4.4:19889931-19889950 None:intergenic 40.0%
GTTTCTTGACAGACAAGCAA+TGG - chr4.4:19889498-19889517 MS.gene35105:CDS 40.0%
TACTGGTGAGTAAGAGGAAT+TGG + chr4.4:19889023-19889042 None:intergenic 40.0%
TCAAGTTCCATCAACTGTGA+CGG - chr4.4:19889600-19889619 MS.gene35105:CDS 40.0%
! AAGTGGTTTAGGTGTTGTGT+AGG + chr4.4:19889080-19889099 None:intergenic 40.0%
! AATCTGGAGGCCATGATTTT+GGG + chr4.4:19889155-19889174 None:intergenic 40.0%
! CCAAAGGTGCAATGATGATA+TGG - chr4.4:19890064-19890083 MS.gene35105:CDS 40.0%
! CTACAAAGCTTGTTCACAAG+TGG - chr4.4:19889656-19889675 MS.gene35105:CDS 40.0%
! GGAACCTTGGTTCGTAAATA+TGG - chr4.4:19889424-19889443 MS.gene35105:CDS 40.0%
! GTGATGATGACAAGTGGTTT+AGG + chr4.4:19889091-19889110 None:intergenic 40.0%
! TGAATATGGGAAGGTTCTAG+AGG + chr4.4:19889115-19889134 None:intergenic 40.0%
! TTTCATGAAGATGGTGCCAA+AGG - chr4.4:19890048-19890067 MS.gene35105:CDS 40.0%
!! AGTGTTGCTTAACAGAACAC+TGG - chr4.4:19889933-19889952 MS.gene35105:CDS 40.0%
!! TTTGAGTACTGGTGAGTAAG+AGG + chr4.4:19889029-19889048 None:intergenic 40.0%
!!! AACCGAGATTTCGGCTTTTT+TGG + chr4.4:19889345-19889364 None:intergenic 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.4:19889529-19889548 MS.gene35105:CDS 40.0%
AAAACTGCTTGGGTTCAGTC+TGG - chr4.4:19889286-19889305 MS.gene35105:CDS 45.0%
AGGATAGACCCTCAAAGTCA+TGG + chr4.4:19889195-19889214 None:intergenic 45.0%
ATACCTTCTCTTGTGCCCAA+GGG - chr4.4:19890453-19890472 MS.gene35105:CDS 45.0%
GCTTGTCCTACAATAGGTGT+TGG - chr4.4:19889376-19889395 MS.gene35105:CDS 45.0%
GTAAACACCGTCACAGTTGA+TGG + chr4.4:19889610-19889629 None:intergenic 45.0%
TATACCTTCTCTTGTGCCCA+AGG - chr4.4:19890452-19890471 MS.gene35105:CDS 45.0%
TGTCCACCAACACCTATTGT+AGG + chr4.4:19889385-19889404 None:intergenic 45.0%
TGTTCACAAGTGGCAGTATG+TGG - chr4.4:19889666-19889685 MS.gene35105:CDS 45.0%
! AAAGTTTCCTGAGTTGGGTG+TGG - chr4.4:19889831-19889850 MS.gene35105:CDS 45.0%
! AGAGGTGTGATGATGACAAG+TGG + chr4.4:19889097-19889116 None:intergenic 45.0%
! GAATCTGGAGGCCATGATTT+TGG + chr4.4:19889156-19889175 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.4:19889532-19889551 MS.gene35105:CDS 45.0%
!! TGTCCTACAATAGGTGTTGG+TGG - chr4.4:19889379-19889398 MS.gene35105:CDS 45.0%
!! TTACCAGGTTGATTGGCAAC+AGG - chr4.4:19890170-19890189 MS.gene35105:CDS 45.0%
ACTTCAGGCAATGCGCCTTT+CGG + chr4.4:19889916-19889935 None:intergenic 50.0%
ATTGTAGGACAAGCACCAGC+TGG + chr4.4:19889370-19889389 None:intergenic 50.0%
CAGCTGGGAAACCGAGATTT+CGG + chr4.4:19889354-19889373 None:intergenic 50.0%
CTTCCTGTTGCCAATCAACC+TGG + chr4.4:19890176-19890195 None:intergenic 50.0%
GCTGGTGCTTGTCCTACAAT+AGG - chr4.4:19889370-19889389 MS.gene35105:CDS 50.0%
GTTCAGTCTGGTGCAACACT+TGG - chr4.4:19889298-19889317 MS.gene35105:CDS 50.0%
TCCAGATTCGAACCCGTAGT+GGG - chr4.4:19889167-19889186 MS.gene35105:CDS 50.0%
TCTCTAACCACACCCAACTC+AGG + chr4.4:19889841-19889860 None:intergenic 50.0%
TTGGCAACAGGAAGGTGATG+AGG - chr4.4:19890182-19890201 MS.gene35105:CDS 50.0%
TTGTAGGACAAGCACCAGCT+GGG + chr4.4:19889369-19889388 None:intergenic 50.0%
!! CAGGTTGATTGGCAACAGGA+AGG - chr4.4:19890174-19890193 MS.gene35105:CDS 50.0%
AAAGTCATGGCCCCCACTAC+GGG + chr4.4:19889182-19889201 None:intergenic 55.0%
AGTGGGGGCCATGACTTTGA+GGG - chr4.4:19889184-19889203 MS.gene35105:CDS 55.0%
CAAAGTCATGGCCCCCACTA+CGG + chr4.4:19889183-19889202 None:intergenic 55.0%
CACTACGGGTTCGAATCTGG+AGG + chr4.4:19889168-19889187 None:intergenic 55.0%
CAGATTCGAACCCGTAGTGG+GGG - chr4.4:19889169-19889188 MS.gene35105:CDS 55.0%
CCAGATTCGAACCCGTAGTG+GGG - chr4.4:19889168-19889187 MS.gene35105:CDS 55.0%
CGAAATCTCGGTTTCCCAGC+TGG - chr4.4:19889352-19889371 MS.gene35105:CDS 55.0%
CTCCAGATTCGAACCCGTAG+TGG - chr4.4:19889166-19889185 MS.gene35105:CDS 55.0%
GCAACAGGAAGGTGATGAGG+TGG - chr4.4:19890185-19890204 MS.gene35105:CDS 55.0%
TAGTGGGGGCCATGACTTTG+AGG - chr4.4:19889183-19889202 MS.gene35105:CDS 55.0%
TGTCCCTTGGGCACAAGAGA+AGG + chr4.4:19890459-19890478 None:intergenic 55.0%
! GTTGGTGGACACTTCAGTGG+TGG - chr4.4:19889394-19889413 MS.gene35105:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG - chr4.4:19889535-19889554 MS.gene35105:CDS 55.0%
!! CACTTCAGTGGTGGTGGCTA+TGG - chr4.4:19889403-19889422 MS.gene35105:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG - chr4.4:19889391-19889410 MS.gene35105:CDS 55.0%
!! TGGTGGTGGCTATGGAACCT+TGG - chr4.4:19889411-19889430 MS.gene35105:CDS 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG - chr4.4:19889547-19889566 MS.gene35105:CDS 55.0%
CCCCACTACGGGTTCGAATC+TGG + chr4.4:19889171-19889190 None:intergenic 60.0%
GGTGGACACTTCAGTGGTGG+TGG - chr4.4:19889397-19889416 MS.gene35105:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 19888857 19890485 19888857 ID=MS.gene35105
chr4.4 mRNA 19888857 19890485 19888857 ID=MS.gene35105.t1;Parent=MS.gene35105
chr4.4 exon 19888857 19890485 19888857 ID=MS.gene35105.t1.exon1;Parent=MS.gene35105.t1
chr4.4 CDS 19888857 19890485 19888857 ID=cds.MS.gene35105.t1;Parent=MS.gene35105.t1
Gene Sequence

>MS.gene35105

ATGATGCCTCTAAGCTCATACTTGTCTATTGCACTTATTGCTATTTTATTTTCATATGCATCTTCTGCAATTGATACTAATACTTATGAAGATAACTTCCTTCAATGTCTTTCTAGTTATTCACATAACTCAACTTCAATCTCTAAAGTTGTGTACACCAAAACCAATTCCTCTTACTCACCAGTACTCAAATATACAACTCAAAATCTAAGATTTGCGTCCTACACAACACCTAAACCACTTGTCATCATCACACCTCTAGAACCTTCCCATATTCAAACAGCCATAATTTGTTCCCAAAATCATGGCCTCCAGATTCGAACCCGTAGTGGGGGCCATGACTTTGAGGGTCTATCCTATGTTTCAGAAGTTCCATTTGTTGTCATTGATCTCGTAAACTTCAAGGAAATTGATGTAGATGTAGAAAGCAAAACTGCTTGGGTTCAGTCTGGTGCAACACTTGGTGAACTTTACTACACAATTAGCCAAAAAAGCCGAAATCTCGGTTTCCCAGCTGGTGCTTGTCCTACAATAGGTGTTGGTGGACACTTCAGTGGTGGTGGCTATGGAACCTTGGTTCGTAAATATGGTCTTGCAGCCGATAATATAATTGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGACAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTGCAAAAGCATTGGAGCAAAATGCTACAAAGCTTGTTCACAAGTGGCAGTATGTGGCAAGTAAAATTGATGAAAACATAGCCATCAATATTGTCTTTCAAAGGATAAATTCAAGTAAAAAAGGTGAGACAACAATTCTAGCTATATTTCAATCCTTGTTTCTTGGAGGTGTAGATAAACTCATTCCCTTGATGGAACAAAAGTTTCCTGAGTTGGGTGTGGTTAGAGAAAATTGTATTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCAATTTCCGAAAGGCGCATTGCCTGAAGTGTTGCTTAACAGAACACTGGCTGCAAACAGCCCAAGATTTATTTACAAAGCAAAATCTGATTTTGTGAAAACTCCTATTCCTGAAAATGGATTAGAAGGAATATGGTCTTTGTTTCATGAAGATGGTGCCAAAGGTGCAATGATGATATGGTTTCCTTATGGTGGAATAATGGATACTATTTCAGAGTCTGAAATTCCATTTCCTCATAGAAAAGGAAATTTATACCATATTCATTACCAGGTTGATTGGCAACAGGAAGGTGATGAGGTGGAAAAACTGCACATTAATTGGATTAGAAAAATTTATAATTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAATTGGGTATATCAACTATAGAGACCTTGATATTGGTGTGAATAACATTGATGGTTACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAAAGTATACCTTCTCTTGTGCCCAAGGGACACAAATAA

Protein sequence

>MS.gene35105.t1

MMPLSSYLSIALIAILFSYASSAIDTNTYEDNFLQCLSSYSHNSTSISKVVYTKTNSSYSPVLKYTTQNLRFASYTTPKPLVIITPLEPSHIQTAIICSQNHGLQIRTRSGGHDFEGLSYVSEVPFVVIDLVNFKEIDVDVESKTAWVQSGATLGELYYTISQKSRNLGFPAGACPTIGVGGHFSGGGYGTLVRKYGLAADNIIDAHIIDVKGRFLDRQAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSTVTVFTVAKALEQNATKLVHKWQYVASKIDENIAINIVFQRINSSKKGETTILAIFQSLFLGGVDKLIPLMEQKFPELGVVRENCIEMSWIESVLYLFQFPKGALPEVLLNRTLAANSPRFIYKAKSDFVKTPIPENGLEGIWSLFHEDGAKGAMMIWFPYGGIMDTISESEIPFPHRKGNLYHIHYQVDWQQEGDEVEKLHINWIRKIYNYMEPFVSKSPRIGYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSLVPKGHK