Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89104.t1 | XP_013465529.1 | 88.4 | 507 | 45 | 3 | 1 | 504 | 1 | 496 | 6.70E-158 | 567.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89104.t1 | Q9LJG8 | 46.2 | 93 | 46 | 2 | 283 | 372 | 84 | 175 | 8.9e-18 | 93.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89104.t1 | A0A072VC01 | 88.4 | 507 | 45 | 3 | 1 | 504 | 1 | 496 | 4.8e-158 | 567.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89104.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene89104 | 0.851981 | 6.23E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene89104 | 0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene89104 | 0.829245 | 5.73E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene89104 | 0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene89104 | 0.815852 | 7.48E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene89104 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene89104 | 0.804034 | 2.62E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene89104 | 0.814353 | 1.61E-51 | -1.69E-46 |
| MS.gene049786 | MS.gene89104 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene049801 | MS.gene89104 | 0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene89104 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene89104 | 0.873299 | 1.64E-67 | -1.69E-46 |
| MS.gene050414 | MS.gene89104 | 0.819371 | 1.20E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene89104 | 0.821344 | 4.24E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene89104 | 0.809984 | 1.44E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene89104 | 0.872658 | 2.69E-67 | -1.69E-46 |
| MS.gene050737 | MS.gene89104 | 0.834659 | 2.64E-56 | -1.69E-46 |
| MS.gene050759 | MS.gene89104 | 0.817284 | 3.57E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene89104 | 0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene89104 | 0.849625 | 2.87E-60 | -1.69E-46 |
| MS.gene050962 | MS.gene89104 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene051066 | MS.gene89104 | 0.843893 | 1.06E-58 | -1.69E-46 |
| MS.gene051198 | MS.gene89104 | 0.869622 | 2.70E-66 | -1.69E-46 |
| MS.gene051209 | MS.gene89104 | 0.800575 | 1.35E-48 | -1.69E-46 |
| MS.gene051210 | MS.gene89104 | 0.84111 | 5.80E-58 | -1.69E-46 |
| MS.gene051279 | MS.gene89104 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene89104 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene89104 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene89104 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene89104 | 0.844151 | 9.03E-59 | -1.69E-46 |
| MS.gene051852 | MS.gene89104 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene052016 | MS.gene89104 | 0.820286 | 7.43E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene89104 | 0.832532 | 8.96E-56 | -1.69E-46 |
| MS.gene052118 | MS.gene89104 | 0.821326 | 4.29E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene89104 | 0.837851 | 4.07E-57 | -1.69E-46 |
| MS.gene052342 | MS.gene89104 | 0.832874 | 7.37E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene89104 | 0.855324 | 6.81E-62 | -1.69E-46 |
| MS.gene052516 | MS.gene89104 | 0.826937 | 2.06E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene89104 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene89104 | 0.805408 | 1.35E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene89104 | 0.821086 | 4.87E-53 | -1.69E-46 |
| MS.gene052674 | MS.gene89104 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene89104 | 0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene89104 | 0.820172 | 7.89E-53 | -1.69E-46 |
| MS.gene052775 | MS.gene89104 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene89104 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene89104 | 0.847286 | 1.27E-59 | -1.69E-46 |
| MS.gene05308 | MS.gene89104 | 0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene89104 | 0.817697 | 2.88E-52 | -1.69E-46 |
| MS.gene053621 | MS.gene89104 | 0.801966 | 7.01E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene89104 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene89104 | 0.82787 | 1.23E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene89104 | 0.811632 | 6.35E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene89104 | 0.835772 | 1.38E-56 | -1.69E-46 |
| MS.gene054641 | MS.gene89104 | 0.84597 | 2.91E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene89104 | 0.821079 | 4.88E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene89104 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene89104 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene89104 | 0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene89104 | 0.82227 | 2.59E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene89104 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene89104 | 0.823506 | 1.34E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene89104 | 0.804913 | 1.72E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene89104 | 0.85445 | 1.22E-61 | -1.69E-46 |
| MS.gene055864 | MS.gene89104 | 0.820047 | 8.43E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene89104 | 0.837385 | 5.36E-57 | -1.69E-46 |
| MS.gene056045 | MS.gene89104 | 0.825132 | 5.54E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene89104 | 0.820448 | 6.82E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene89104 | 0.821663 | 3.58E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene89104 | 0.854042 | 1.60E-61 | -1.69E-46 |
| MS.gene056480 | MS.gene89104 | 0.808714 | 2.70E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene89104 | 0.836104 | 1.14E-56 | -1.69E-46 |
| MS.gene056519 | MS.gene89104 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene89104 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene89104 | 0.807284 | 5.45E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene89104 | 0.838558 | 2.68E-57 | -1.69E-46 |
| MS.gene056831 | MS.gene89104 | 0.850109 | 2.10E-60 | -1.69E-46 |
| MS.gene05686 | MS.gene89104 | 0.81484 | 1.25E-51 | -1.69E-46 |
| MS.gene056973 | MS.gene89104 | 0.83963 | 1.41E-57 | -1.69E-46 |
| MS.gene057034 | MS.gene89104 | 0.821858 | 3.23E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene89104 | 0.815307 | 9.89E-52 | -1.69E-46 |
| MS.gene057371 | MS.gene89104 | 0.802362 | 5.81E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene89104 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene057919 | MS.gene89104 | 0.830639 | 2.62E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene89104 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene89104 | 0.836143 | 1.11E-56 | -1.69E-46 |
| MS.gene058289 | MS.gene89104 | 0.813132 | 2.99E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene89104 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene89104 | 0.824897 | 6.29E-54 | -1.69E-46 |
| MS.gene058427 | MS.gene89104 | 0.815946 | 7.12E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene89104 | 0.836581 | 8.61E-57 | -1.69E-46 |
| MS.gene058647 | MS.gene89104 | 0.813506 | 2.47E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene89104 | 0.815857 | 7.46E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene89104 | 0.819735 | 9.94E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene89104 | 0.852868 | 3.48E-61 | -1.69E-46 |
| MS.gene059224 | MS.gene89104 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene89104 | 0.824357 | 8.43E-54 | -1.69E-46 |
| MS.gene059438 | MS.gene89104 | 0.811691 | 6.17E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene89104 | 0.840065 | 1.09E-57 | -1.69E-46 |
| MS.gene059570 | MS.gene89104 | 0.820738 | 5.85E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene89104 | 0.812664 | 3.78E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene89104 | 0.822195 | 2.70E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene89104 | 0.804046 | 2.61E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene89104 | 0.807249 | 5.54E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene89104 | 0.812004 | 5.27E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene89104 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene89104 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene89104 | 0.850106 | 2.10E-60 | -1.69E-46 |
| MS.gene060527 | MS.gene89104 | 0.813522 | 2.45E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene89104 | 0.879394 | 1.29E-69 | -1.69E-46 |
| MS.gene060637 | MS.gene89104 | 0.825159 | 5.46E-54 | -1.69E-46 |
| MS.gene060777 | MS.gene89104 | 0.823166 | 1.60E-53 | -1.69E-46 |
| MS.gene060785 | MS.gene89104 | 0.811379 | 7.21E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene89104 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene89104 | 0.868602 | 5.78E-66 | -1.69E-46 |
| MS.gene060933 | MS.gene89104 | 0.831126 | 1.99E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene89104 | 0.82672 | 2.32E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene89104 | 0.839875 | 1.22E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene89104 | 0.841585 | 4.35E-58 | -1.69E-46 |
| MS.gene06121 | MS.gene89104 | 0.830044 | 3.67E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89104.t1 | MTR_2g102227 | 86.117 | 497 | 55 | 3 | 11 | 504 | 11 | 496 | 0.0 | 721 |
| MS.gene89104.t1 | MTR_6g486270 | 52.252 | 222 | 101 | 3 | 282 | 500 | 129 | 348 | 1.82e-60 | 203 |
| MS.gene89104.t1 | MTR_8g022290 | 28.339 | 307 | 143 | 10 | 262 | 500 | 37 | 334 | 5.53e-20 | 92.0 |
| MS.gene89104.t1 | MTR_4g079960 | 43.617 | 94 | 47 | 2 | 283 | 370 | 31 | 124 | 8.58e-16 | 78.6 |
| MS.gene89104.t1 | MTR_4g079960 | 43.617 | 94 | 47 | 2 | 283 | 370 | 31 | 124 | 1.04e-15 | 78.6 |
| MS.gene89104.t1 | MTR_4g079960 | 43.617 | 94 | 47 | 2 | 283 | 370 | 31 | 124 | 1.67e-15 | 77.8 |
| MS.gene89104.t1 | MTR_2g016140 | 39.785 | 93 | 51 | 2 | 283 | 370 | 23 | 115 | 3.03e-15 | 77.0 |
| MS.gene89104.t1 | MTR_2g016140 | 39.785 | 93 | 51 | 2 | 283 | 370 | 23 | 115 | 5.19e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89104.t1 | AT3G24490 | 42.912 | 261 | 129 | 4 | 245 | 504 | 65 | 306 | 4.49e-59 | 198 |
| MS.gene89104.t1 | AT3G14180 | 42.857 | 105 | 53 | 3 | 283 | 384 | 84 | 184 | 3.21e-22 | 99.8 |
| MS.gene89104.t1 | AT1G54060 | 32.031 | 256 | 130 | 8 | 283 | 496 | 94 | 347 | 8.71e-19 | 88.6 |
| MS.gene89104.t1 | AT3G11100 | 32.569 | 218 | 137 | 3 | 283 | 496 | 22 | 233 | 1.17e-17 | 83.2 |
| MS.gene89104.t1 | AT5G05550 | 30.837 | 227 | 136 | 6 | 283 | 502 | 24 | 236 | 8.61e-16 | 77.4 |
| MS.gene89104.t1 | AT5G05550 | 30.837 | 227 | 136 | 6 | 283 | 502 | 24 | 236 | 1.22e-15 | 77.0 |
| MS.gene89104.t1 | AT3G58630 | 37.255 | 102 | 50 | 2 | 283 | 370 | 26 | 127 | 1.78e-15 | 77.8 |
| MS.gene89104.t1 | AT5G05550 | 30.837 | 227 | 136 | 6 | 283 | 502 | 24 | 236 | 1.83e-15 | 76.6 |
| MS.gene89104.t1 | AT3G58630 | 37.255 | 102 | 50 | 2 | 283 | 370 | 26 | 127 | 2.14e-15 | 77.8 |
| MS.gene89104.t1 | AT3G10030 | 35.556 | 90 | 57 | 1 | 282 | 370 | 160 | 249 | 1.72e-13 | 73.2 |
| MS.gene89104.t1 | AT3G10030 | 35.556 | 90 | 57 | 1 | 282 | 370 | 160 | 249 | 2.36e-13 | 72.8 |
| MS.gene89104.t1 | AT3G24860 | 29.921 | 127 | 79 | 3 | 266 | 386 | 48 | 170 | 1.22e-11 | 66.2 |
Find 127 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATTCCATTCAGAATTT+TGG | 0.118439 | 2.4:+2760749 | MS.gene89104:CDS |
| CGTCTTCATCCACCTGCTTT+AGG | 0.171389 | 2.4:-2759749 | None:intergenic |
| CTTCTTCATCAGCATGCTTT+AGG | 0.195850 | 2.4:-2759974 | None:intergenic |
| CAAGATTAAGTTTCAAGATA+TGG | 0.238032 | 2.4:+2760451 | MS.gene89104:CDS |
| TTCCCAAATGGCTGGGAATA+TGG | 0.258167 | 2.4:-2759852 | None:intergenic |
| TTCTTCATCAGCATGCTTTA+GGG | 0.275731 | 2.4:-2759973 | None:intergenic |
| GCAGCTGCTAAACGATCTTT+TGG | 0.284124 | 2.4:+2760215 | MS.gene89104:CDS |
| GTCTTCATCCACCTGCTTTA+GGG | 0.285453 | 2.4:-2759748 | None:intergenic |
| TGGGTGGTGGAGATAGAAAA+TGG | 0.290828 | 2.4:+2760471 | MS.gene89104:CDS |
| CATTTGTTCTTCTTGATGCT+TGG | 0.296454 | 2.4:+2760276 | MS.gene89104:CDS |
| TCGCCATACCCTTGATTGTT+AGG | 0.308295 | 2.4:-2759477 | None:intergenic |
| ATTTGTTCTTCTTGATGCTT+GGG | 0.319429 | 2.4:+2760277 | MS.gene89104:CDS |
| AGAAGATTGAAAATAATAAA+AGG | 0.319723 | 2.4:+2760783 | MS.gene89104:CDS |
| ACAGAATCGGTTCGTGTAGA+AGG | 0.331232 | 2.4:+2760653 | MS.gene89104:CDS |
| TCTCCATATTCCCAGCCATT+TGG | 0.360453 | 2.4:+2759849 | MS.gene89104:CDS |
| GATGGATTTCCTCAACGATT+TGG | 0.369450 | 2.4:+2760835 | MS.gene89104:CDS |
| CTCCATATTCCCAGCCATTT+GGG | 0.375943 | 2.4:+2759850 | MS.gene89104:CDS |
| AGAAGATGAAGAGCGGTTAG+TGG | 0.381730 | 2.4:+2759899 | MS.gene89104:CDS |
| ACCAACACCATATGGGTTAG+AGG | 0.383815 | 2.4:-2759451 | None:intergenic |
| TTCTTGATGCTTGGGGTGAT+CGG | 0.409344 | 2.4:+2760285 | MS.gene89104:CDS |
| TTAGGATAACCAACACCATA+TGG | 0.412870 | 2.4:-2759459 | None:intergenic |
| TACCTTCATTCCCAAATGGC+TGG | 0.417617 | 2.4:-2759860 | None:intergenic |
| GACCGACAAAGCGAGGAATA+TGG | 0.421493 | 2.4:+2759801 | MS.gene89104:CDS |
| ATCGGTTTCTGCAACATAGA+AGG | 0.423435 | 2.4:+2760303 | MS.gene89104:CDS |
| AAGATTAAGTTTCAAGATAT+GGG | 0.423794 | 2.4:+2760452 | MS.gene89104:CDS |
| TCCCAGCCATTTGGGAATGA+AGG | 0.432109 | 2.4:+2759858 | MS.gene89104:CDS |
| AACCATATTCCTCGCTTTGT+CGG | 0.453074 | 2.4:-2759803 | None:intergenic |
| ATGGCAACAAGTTGCAGAAA+AGG | 0.453580 | 2.4:+2760346 | MS.gene89104:CDS |
| TAATAAAAGGCAGCAGATGA+TGG | 0.461717 | 2.4:+2760796 | MS.gene89104:CDS |
| GCGATCTCAAACACCCTTTG+AGG | 0.462774 | 2.4:+2759496 | MS.gene89104:CDS |
| GTTTCAAAAGTTGAAAGAAC+GGG | 0.463936 | 2.4:+2760377 | MS.gene89104:CDS |
| GGGTGGTGGAGATAGAAAAT+GGG | 0.465027 | 2.4:+2760472 | MS.gene89104:CDS |
| AAGAAAAGAAGGAGAGGAAG+GGG | 0.472304 | 2.4:+2760695 | MS.gene89104:CDS |
| GTTGGTTATCCTAACAATCA+AGG | 0.472688 | 2.4:+2759468 | MS.gene89104:CDS |
| AAAATGTTGACGACGAGGAT+GGG | 0.474465 | 2.4:+2760027 | MS.gene89104:CDS |
| CATCACCGTTCCCTCCTAAC+CGG | 0.475969 | 2.4:-2759653 | None:intergenic |
| TTGACGACGAGGATGGGGAT+AGG | 0.478859 | 2.4:+2760033 | MS.gene89104:CDS |
| CCTTCTCAGTCCATTCAGTA+AGG | 0.479775 | 2.4:-2760250 | None:intergenic |
| GCAGCTGCAGCTGACGGTGT+TGG | 0.482446 | 2.4:-2760200 | None:intergenic |
| TTAGGAATTCCCTTACTGAA+TGG | 0.483595 | 2.4:+2760240 | MS.gene89104:CDS |
| TTGTTACCTTCATTCCCAAA+TGG | 0.485652 | 2.4:-2759864 | None:intergenic |
| CATCATCATTCCCTCCTATC+CGG | 0.487334 | 2.4:-2759692 | None:intergenic |
| GGAATCAGCAAGTAATTTGA+AGG | 0.488399 | 2.4:-2760735 | None:intergenic |
| GCAATGACGAGGATGGGGAT+AGG | 0.488482 | 2.4:+2760000 | MS.gene89104:CDS |
| CGGGTAGATTCATTTGCAGC+TGG | 0.491062 | 2.4:-2759537 | None:intergenic |
| CAAAGAAAAGAAGGAGAGGA+AGG | 0.491377 | 2.4:+2760693 | MS.gene89104:CDS |
| TAATTCATCTTCATTCATCA+TGG | 0.493258 | 2.4:-2760111 | None:intergenic |
| CAATGACGAGGATGGGGATA+GGG | 0.494589 | 2.4:+2760001 | MS.gene89104:CDS |
| CATCGACATGATCATAATCT+CGG | 0.496049 | 2.4:-2759557 | None:intergenic |
| TATCTTACCAAAATTCTGAA+TGG | 0.497261 | 2.4:-2760756 | None:intergenic |
| TAGATTCATTTGCAGCTGGA+TGG | 0.497620 | 2.4:-2759533 | None:intergenic |
| ACCTTCATTCCCAAATGGCT+GGG | 0.497851 | 2.4:-2759859 | None:intergenic |
| TCCTCCTGAAAATACAGAAT+CGG | 0.498451 | 2.4:+2760640 | MS.gene89104:CDS |
| AGGTATCCCTCTAACCCATA+TGG | 0.502976 | 2.4:+2759444 | MS.gene89104:CDS |
| GCATGATTTACATAAACTCC+AGG | 0.504047 | 2.4:-2760590 | None:intergenic |
| AGATTCATTTGCAGCTGGAT+GGG | 0.504646 | 2.4:-2759532 | None:intergenic |
| GAAAATGTTGACGACGAGGA+TGG | 0.512898 | 2.4:+2760026 | MS.gene89104:CDS |
| AAGATAGCAATGACGAGGAT+GGG | 0.513429 | 2.4:+2759994 | MS.gene89104:CDS |
| GAAGATAGCAATGACGAGGA+TGG | 0.518876 | 2.4:+2759993 | MS.gene89104:CDS |
| GGCCTTGCCCAAAGAAAAGA+AGG | 0.520654 | 2.4:+2760684 | MS.gene89104:CDS |
| GACGATGAAGATCGGTTAGG+AGG | 0.521555 | 2.4:+2759603 | MS.gene89104:CDS |
| TGACGACGAGGATGGGGATA+GGG | 0.523050 | 2.4:+2760034 | MS.gene89104:CDS |
| AATATGAAGAATTCCTCAAA+GGG | 0.523799 | 2.4:-2759509 | None:intergenic |
| AAGTTTCAAGATATGGGTGG+TGG | 0.524195 | 2.4:+2760458 | MS.gene89104:CDS |
| TAGGATAACCAACACCATAT+GGG | 0.528470 | 2.4:-2759458 | None:intergenic |
| CCCTCTAACCCATATGGTGT+TGG | 0.531952 | 2.4:+2759450 | MS.gene89104:CDS |
| TATCCTAACAATCAAGGGTA+TGG | 0.537427 | 2.4:+2759474 | MS.gene89104:CDS |
| AAAGAAAAGAAGGAGAGGAA+GGG | 0.537660 | 2.4:+2760694 | MS.gene89104:CDS |
| GGAACTAGAAAAGATGAGGA+TGG | 0.544427 | 2.4:+2760817 | MS.gene89104:CDS |
| AGATGAAGAGCGGTTAGTGG+AGG | 0.544899 | 2.4:+2759902 | MS.gene89104:CDS |
| CGGTGATAATGACAATAAGC+AGG | 0.547701 | 2.4:+2760079 | MS.gene89104:CDS |
| AAATGTTGACGACGAGGATG+GGG | 0.548278 | 2.4:+2760028 | MS.gene89104:CDS |
| GGGAGTCTTGCTTGTTGTGG+TGG | 0.550724 | 2.4:-2760530 | None:intergenic |
| GTCGATGATGAAGATCAGTT+AGG | 0.550883 | 2.4:+2759573 | MS.gene89104:CDS |
| GTTGATGAAGACCGGTTAGG+AGG | 0.553914 | 2.4:+2759642 | MS.gene89104:CDS |
| TTTGTTCTTCTTGATGCTTG+GGG | 0.554775 | 2.4:+2760278 | MS.gene89104:CDS |
| GTTCGTGTAGAAGGTTTCGA+AGG | 0.557020 | 2.4:+2760662 | MS.gene89104:CDS |
| AGATAGCAATGACGAGGATG+GGG | 0.557142 | 2.4:+2759995 | MS.gene89104:CDS |
| ATCGACATGATCATAATCTC+GGG | 0.559195 | 2.4:-2759556 | None:intergenic |
| GTTGATGAAGACCGGATAGG+AGG | 0.559685 | 2.4:+2759681 | MS.gene89104:CDS |
| CCAACACCATATGGGTTAGA+GGG | 0.561593 | 2.4:-2759450 | None:intergenic |
| CGTTTAGCAGCTGCAGCTGA+CGG | 0.562335 | 2.4:-2760206 | None:intergenic |
| ATGATGTTGTTGATGAAGAC+CGG | 0.562727 | 2.4:+2759634 | MS.gene89104:CDS |
| TGATCATCATTCCCTAAAGC+AGG | 0.566741 | 2.4:+2759737 | MS.gene89104:CDS |
| GATGATGAAGATCAGTTAGG+AGG | 0.571101 | 2.4:+2759576 | MS.gene89104:CDS |
| GGTTTCAAAAGTTGAAAGAA+CGG | 0.571460 | 2.4:+2760376 | MS.gene89104:CDS |
| AATGACGATGAAGATCGGTT+AGG | 0.571987 | 2.4:+2759600 | MS.gene89104:CDS |
| AGGATGAAGAAGATGAAGAG+CGG | 0.572202 | 2.4:+2759892 | MS.gene89104:CDS |
| GTTGTTGATGAAGACCGGTT+AGG | 0.573185 | 2.4:+2759639 | MS.gene89104:CDS |
| TGTAAATCATGCAAATGAGA+TGG | 0.574988 | 2.4:+2760601 | MS.gene89104:CDS |
| TCTCTTGAGTTCGAACGACA+AGG | 0.575445 | 2.4:-2760551 | None:intergenic |
| ATGAAGACGATGACACCGAT+GGG | 0.578930 | 2.4:+2759763 | MS.gene89104:CDS |
| GATGAAGACGATGACACCGA+TGG | 0.583172 | 2.4:+2759762 | MS.gene89104:CDS |
| ATGATGTTGTTGATGAAGAC+CGG | 0.583247 | 2.4:+2759673 | MS.gene89104:CDS |
| AAGGAAGAGTCTTCGATCTG+AGG | 0.584495 | 2.4:+2760322 | MS.gene89104:CDS |
| GAATATGAAGAATTCCTCAA+AGG | 0.587878 | 2.4:-2759510 | None:intergenic |
| CAAGGGAGTCTTGCTTGTTG+TGG | 0.589582 | 2.4:-2760533 | None:intergenic |
| CTTCTCAGTCCATTCAGTAA+GGG | 0.589672 | 2.4:-2760249 | None:intergenic |
| AGAGTCTTCGATCTGAGGAA+TGG | 0.593143 | 2.4:+2760327 | MS.gene89104:CDS |
| GAGGGAATGACGATGAAGAT+CGG | 0.593801 | 2.4:+2759595 | MS.gene89104:CDS |
| AGTTGCAGAAAAGGTATCAG+TGG | 0.596635 | 2.4:+2760355 | MS.gene89104:CDS |
| TTCGTGTAGAAGGTTTCGAA+GGG | 0.597829 | 2.4:+2760663 | MS.gene89104:CDS |
| TTGATGAAGACCGGATAGGA+GGG | 0.598250 | 2.4:+2759682 | MS.gene89104:CDS |
| ACGATGAAGATCGGTTAGGA+GGG | 0.600690 | 2.4:+2759604 | MS.gene89104:CDS |
| GAAGACCGGTTAGGAGGGAA+CGG | 0.600818 | 2.4:+2759648 | MS.gene89104:CDS |
| TTGGTTATCCTAACAATCAA+GGG | 0.603345 | 2.4:+2759469 | MS.gene89104:CDS |
| CCTTACTGAATGGACTGAGA+AGG | 0.603468 | 2.4:+2760250 | MS.gene89104:CDS |
| ATGATGAAGATCAGTTAGGA+GGG | 0.607333 | 2.4:+2759577 | MS.gene89104:CDS |
| TGCCCAAAGAAAAGAAGGAG+AGG | 0.607703 | 2.4:+2760689 | MS.gene89104:CDS |
| CTCTTGAGTTCGAACGACAA+GGG | 0.610632 | 2.4:-2760550 | None:intergenic |
| TTGATGAAGACCGGTTAGGA+GGG | 0.615039 | 2.4:+2759643 | MS.gene89104:CDS |
| TGATGGAACTAGAAAAGATG+AGG | 0.616160 | 2.4:+2760813 | MS.gene89104:CDS |
| AAATGAGATGGATGACATGA+AGG | 0.616691 | 2.4:+2760613 | MS.gene89104:CDS |
| TCATCATTCCCTAAAGCAGG+TGG | 0.639405 | 2.4:+2759740 | MS.gene89104:CDS |
| ATTAAGTTTCAAGATATGGG+TGG | 0.645987 | 2.4:+2760455 | MS.gene89104:CDS |
| TGACAATGACCGACAAAGCG+AGG | 0.648844 | 2.4:+2759794 | MS.gene89104:CDS |
| TTTGTGCTTCCAAATCGTTG+AGG | 0.661381 | 2.4:-2760844 | None:intergenic |
| GAATGAAGGTAACAATGATG+AGG | 0.691606 | 2.4:+2759872 | MS.gene89104:CDS |
| GTTGTTGATGAAGACCGGAT+AGG | 0.693675 | 2.4:+2759678 | MS.gene89104:CDS |
| GAAGACGATGACACCGATGG+GGG | 0.696635 | 2.4:+2759765 | MS.gene89104:CDS |
| TGAAGAAGATAGCAATGACG+AGG | 0.697416 | 2.4:+2759989 | MS.gene89104:CDS |
| GAAAATGTTGATGACAATGA+CGG | 0.700114 | 2.4:+2760059 | MS.gene89104:CDS |
| TTGATGATGATGCAATTGCA+AGG | 0.701591 | 2.4:+2759424 | MS.gene89104:CDS |
| GTTATCTGAAACATTCTGTG+AGG | 0.703353 | 2.4:+2759823 | MS.gene89104:CDS |
| GGATGAAAATGTTGACGACG+AGG | 0.709102 | 2.4:+2760022 | MS.gene89104:CDS |
| TGAAGACGATGACACCGATG+GGG | 0.719428 | 2.4:+2759764 | MS.gene89104:CDS |
| TGAATGAAGATGAATTAGAG+TGG | 0.724734 | 2.4:+2760117 | MS.gene89104:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGATTGAAAATAATAAA+AGG | + | chr2.4:2760783-2760802 | MS.gene89104:CDS | 15.0% |
| !! | ATTGAAGAAAAAATACAAAA+AGG | + | chr2.4:2760427-2760446 | MS.gene89104:CDS | 15.0% |
| !! | AAGATTAAGTTTCAAGATAT+GGG | + | chr2.4:2760452-2760471 | MS.gene89104:CDS | 20.0% |
| ! | AATATGAAGAATTCCTCAAA+GGG | - | chr2.4:2759512-2759531 | None:intergenic | 25.0% |
| ! | CAAGATTAAGTTTCAAGATA+TGG | + | chr2.4:2760451-2760470 | MS.gene89104:CDS | 25.0% |
| ! | TAATTCATCTTCATTCATCA+TGG | - | chr2.4:2760114-2760133 | None:intergenic | 25.0% |
| ! | TATCTTACCAAAATTCTGAA+TGG | - | chr2.4:2760759-2760778 | None:intergenic | 25.0% |
| !!! | ATGGGTTTATTTTCAAAAGA+TGG | + | chr2.4:2760490-2760509 | MS.gene89104:CDS | 25.0% |
| !!! | TCTTTAGCTTTTGCTTTTTT+GGG | - | chr2.4:2760145-2760164 | None:intergenic | 25.0% |
| ATTAAGTTTCAAGATATGGG+TGG | + | chr2.4:2760455-2760474 | MS.gene89104:CDS | 30.0% | |
| ATTTGTTCTTCTTGATGCTT+GGG | + | chr2.4:2760277-2760296 | MS.gene89104:CDS | 30.0% | |
| GAATATGAAGAATTCCTCAA+AGG | - | chr2.4:2759513-2759532 | None:intergenic | 30.0% | |
| GGTTTCAAAAGTTGAAAGAA+CGG | + | chr2.4:2760376-2760395 | MS.gene89104:CDS | 30.0% | |
| GTTTCAAAAGTTGAAAGAAC+GGG | + | chr2.4:2760377-2760396 | MS.gene89104:CDS | 30.0% | |
| TGAATGAAGATGAATTAGAG+TGG | + | chr2.4:2760117-2760136 | MS.gene89104:CDS | 30.0% | |
| TGTAAATCATGCAAATGAGA+TGG | + | chr2.4:2760601-2760620 | MS.gene89104:CDS | 30.0% | |
| TTGGTTATCCTAACAATCAA+GGG | + | chr2.4:2759469-2759488 | MS.gene89104:CDS | 30.0% | |
| !! | GAAAATGTTGATGACAATGA+CGG | + | chr2.4:2760059-2760078 | MS.gene89104:CDS | 30.0% |
| !!! | CTCTTTAGCTTTTGCTTTTT+TGG | - | chr2.4:2760146-2760165 | None:intergenic | 30.0% |
| AAAGAAAAGAAGGAGAGGAA+GGG | + | chr2.4:2760694-2760713 | MS.gene89104:CDS | 35.0% | |
| AAATGAGATGGATGACATGA+AGG | + | chr2.4:2760613-2760632 | MS.gene89104:CDS | 35.0% | |
| ATCGACATGATCATAATCTC+GGG | - | chr2.4:2759559-2759578 | None:intergenic | 35.0% | |
| ATGATGAAGATCAGTTAGGA+GGG | + | chr2.4:2759577-2759596 | MS.gene89104:CDS | 35.0% | |
| CATCGACATGATCATAATCT+CGG | - | chr2.4:2759560-2759579 | None:intergenic | 35.0% | |
| CATTTGTTCTTCTTGATGCT+TGG | + | chr2.4:2760276-2760295 | MS.gene89104:CDS | 35.0% | |
| GAATGAAGGTAACAATGATG+AGG | + | chr2.4:2759872-2759891 | MS.gene89104:CDS | 35.0% | |
| GCATGATTTACATAAACTCC+AGG | - | chr2.4:2760593-2760612 | None:intergenic | 35.0% | |
| GGAATCAGCAAGTAATTTGA+AGG | - | chr2.4:2760738-2760757 | None:intergenic | 35.0% | |
| GTTGGTTATCCTAACAATCA+AGG | + | chr2.4:2759468-2759487 | MS.gene89104:CDS | 35.0% | |
| TAATAAAAGGCAGCAGATGA+TGG | + | chr2.4:2760796-2760815 | MS.gene89104:CDS | 35.0% | |
| TAGGATAACCAACACCATAT+GGG | - | chr2.4:2759461-2759480 | None:intergenic | 35.0% | |
| TATCCTAACAATCAAGGGTA+TGG | + | chr2.4:2759474-2759493 | MS.gene89104:CDS | 35.0% | |
| TCCTCCTGAAAATACAGAAT+CGG | + | chr2.4:2760640-2760659 | MS.gene89104:CDS | 35.0% | |
| TGATGGAACTAGAAAAGATG+AGG | + | chr2.4:2760813-2760832 | MS.gene89104:CDS | 35.0% | |
| TTAGGAATTCCCTTACTGAA+TGG | + | chr2.4:2760240-2760259 | MS.gene89104:CDS | 35.0% | |
| TTAGGATAACCAACACCATA+TGG | - | chr2.4:2759462-2759481 | None:intergenic | 35.0% | |
| TTCTTCATCAGCATGCTTTA+GGG | - | chr2.4:2759976-2759995 | None:intergenic | 35.0% | |
| TTGTTACCTTCATTCCCAAA+TGG | - | chr2.4:2759867-2759886 | None:intergenic | 35.0% | |
| TTTGTTCTTCTTGATGCTTG+GGG | + | chr2.4:2760278-2760297 | MS.gene89104:CDS | 35.0% | |
| ! | ATGATGTTGTTGATGAAGAC+CGG | + | chr2.4:2759634-2759653 | MS.gene89104:CDS | 35.0% |
| ! | GTTATCTGAAACATTCTGTG+AGG | + | chr2.4:2759823-2759842 | MS.gene89104:CDS | 35.0% |
| ! | TTCCTCTCCTTCTTTTCTTT+GGG | - | chr2.4:2760694-2760713 | None:intergenic | 35.0% |
| !! | GAGCATATTTTTATGAAGCC+TGG | + | chr2.4:2760572-2760591 | MS.gene89104:CDS | 35.0% |
| !! | GCTGATTCCATTCAGAATTT+TGG | + | chr2.4:2760749-2760768 | MS.gene89104:CDS | 35.0% |
| !! | TTGATGATGATGCAATTGCA+AGG | + | chr2.4:2759424-2759443 | MS.gene89104:CDS | 35.0% |
| AAAATGTTGACGACGAGGAT+GGG | + | chr2.4:2760027-2760046 | MS.gene89104:CDS | 40.0% | |
| AACCATATTCCTCGCTTTGT+CGG | - | chr2.4:2759806-2759825 | None:intergenic | 40.0% | |
| AAGAAAAGAAGGAGAGGAAG+GGG | + | chr2.4:2760695-2760714 | MS.gene89104:CDS | 40.0% | |
| AAGATAGCAATGACGAGGAT+GGG | + | chr2.4:2759994-2760013 | MS.gene89104:CDS | 40.0% | |
| AAGTTTCAAGATATGGGTGG+TGG | + | chr2.4:2760458-2760477 | MS.gene89104:CDS | 40.0% | |
| AATGACGATGAAGATCGGTT+AGG | + | chr2.4:2759600-2759619 | MS.gene89104:CDS | 40.0% | |
| AGATTCATTTGCAGCTGGAT+GGG | - | chr2.4:2759535-2759554 | None:intergenic | 40.0% | |
| AGGATGAAGAAGATGAAGAG+CGG | + | chr2.4:2759892-2759911 | MS.gene89104:CDS | 40.0% | |
| ATGGCAACAAGTTGCAGAAA+AGG | + | chr2.4:2760346-2760365 | MS.gene89104:CDS | 40.0% | |
| CAAAGAAAAGAAGGAGAGGA+AGG | + | chr2.4:2760693-2760712 | MS.gene89104:CDS | 40.0% | |
| CTTCTCAGTCCATTCAGTAA+GGG | - | chr2.4:2760252-2760271 | None:intergenic | 40.0% | |
| CTTCTTCATCAGCATGCTTT+AGG | - | chr2.4:2759977-2759996 | None:intergenic | 40.0% | |
| GATGATGAAGATCAGTTAGG+AGG | + | chr2.4:2759576-2759595 | MS.gene89104:CDS | 40.0% | |
| GGAACTAGAAAAGATGAGGA+TGG | + | chr2.4:2760817-2760836 | MS.gene89104:CDS | 40.0% | |
| GTCGATGATGAAGATCAGTT+AGG | + | chr2.4:2759573-2759592 | MS.gene89104:CDS | 40.0% | |
| TAGATTCATTTGCAGCTGGA+TGG | - | chr2.4:2759536-2759555 | None:intergenic | 40.0% | |
| TGAAGAAGATAGCAATGACG+AGG | + | chr2.4:2759989-2760008 | MS.gene89104:CDS | 40.0% | |
| TGATCATCATTCCCTAAAGC+AGG | + | chr2.4:2759737-2759756 | MS.gene89104:CDS | 40.0% | |
| TTCGTGTAGAAGGTTTCGAA+GGG | + | chr2.4:2760663-2760682 | MS.gene89104:CDS | 40.0% | |
| TTTGTGCTTCCAAATCGTTG+AGG | - | chr2.4:2760847-2760866 | None:intergenic | 40.0% | |
| ! | AGCTGCTAAACGATCTTTTG+GGG | + | chr2.4:2760217-2760236 | MS.gene89104:CDS | 40.0% |
| ! | ATCGGTTTCTGCAACATAGA+AGG | + | chr2.4:2760303-2760322 | MS.gene89104:CDS | 40.0% |
| ! | CAGCTGCTAAACGATCTTTT+GGG | + | chr2.4:2760216-2760235 | MS.gene89104:CDS | 40.0% |
| ! | CGGTGATAATGACAATAAGC+AGG | + | chr2.4:2760079-2760098 | MS.gene89104:CDS | 40.0% |
| ! | CTTCCTCTCCTTCTTTTCTT+TGG | - | chr2.4:2760695-2760714 | None:intergenic | 40.0% |
| ! | GATGGATTTCCTCAACGATT+TGG | + | chr2.4:2760835-2760854 | MS.gene89104:CDS | 40.0% |
| !! | ACCGATTCTGTATTTTCAGG+AGG | - | chr2.4:2760644-2760663 | None:intergenic | 40.0% |
| !! | AGTTGCAGAAAAGGTATCAG+TGG | + | chr2.4:2760355-2760374 | MS.gene89104:CDS | 40.0% |
| !! | CGAACCGATTCTGTATTTTC+AGG | - | chr2.4:2760647-2760666 | None:intergenic | 40.0% |
| !!! | CTAAACGATCTTTTGGGGTT+AGG | + | chr2.4:2760222-2760241 | MS.gene89104:CDS | 40.0% |
| AAATGTTGACGACGAGGATG+GGG | + | chr2.4:2760028-2760047 | MS.gene89104:CDS | 45.0% | |
| AAGGAAGAGTCTTCGATCTG+AGG | + | chr2.4:2760322-2760341 | MS.gene89104:CDS | 45.0% | |
| ACCTTCATTCCCAAATGGCT+GGG | - | chr2.4:2759862-2759881 | None:intergenic | 45.0% | |
| ACGATGAAGATCGGTTAGGA+GGG | + | chr2.4:2759604-2759623 | MS.gene89104:CDS | 45.0% | |
| AGAAGATGAAGAGCGGTTAG+TGG | + | chr2.4:2759899-2759918 | MS.gene89104:CDS | 45.0% | |
| AGAGTCTTCGATCTGAGGAA+TGG | + | chr2.4:2760327-2760346 | MS.gene89104:CDS | 45.0% | |
| AGATAGCAATGACGAGGATG+GGG | + | chr2.4:2759995-2760014 | MS.gene89104:CDS | 45.0% | |
| AGGTATCCCTCTAACCCATA+TGG | + | chr2.4:2759444-2759463 | MS.gene89104:CDS | 45.0% | |
| ATGAAGACGATGACACCGAT+GGG | + | chr2.4:2759763-2759782 | MS.gene89104:CDS | 45.0% | |
| CATCATCATTCCCTCCTATC+CGG | - | chr2.4:2759695-2759714 | None:intergenic | 45.0% | |
| CCTTCTCAGTCCATTCAGTA+AGG | - | chr2.4:2760253-2760272 | None:intergenic | 45.0% | |
| CTCCATATTCCCAGCCATTT+GGG | + | chr2.4:2759850-2759869 | MS.gene89104:CDS | 45.0% | |
| CTCTTGAGTTCGAACGACAA+GGG | - | chr2.4:2760553-2760572 | None:intergenic | 45.0% | |
| GAAAATGTTGACGACGAGGA+TGG | + | chr2.4:2760026-2760045 | MS.gene89104:CDS | 45.0% | |
| GAAGATAGCAATGACGAGGA+TGG | + | chr2.4:2759993-2760012 | MS.gene89104:CDS | 45.0% | |
| GAGGGAATGACGATGAAGAT+CGG | + | chr2.4:2759595-2759614 | MS.gene89104:CDS | 45.0% | |
| GGATGAAAATGTTGACGACG+AGG | + | chr2.4:2760022-2760041 | MS.gene89104:CDS | 45.0% | |
| GTCTTCATCCACCTGCTTTA+GGG | - | chr2.4:2759751-2759770 | None:intergenic | 45.0% | |
| GTTCGTGTAGAAGGTTTCGA+AGG | + | chr2.4:2760662-2760681 | MS.gene89104:CDS | 45.0% | |
| TACCTTCATTCCCAAATGGC+TGG | - | chr2.4:2759863-2759882 | None:intergenic | 45.0% | |
| TCATCATTCCCTAAAGCAGG+TGG | + | chr2.4:2759740-2759759 | MS.gene89104:CDS | 45.0% | |
| TCGCCATACCCTTGATTGTT+AGG | - | chr2.4:2759480-2759499 | None:intergenic | 45.0% | |
| TCTCCATATTCCCAGCCATT+TGG | + | chr2.4:2759849-2759868 | MS.gene89104:CDS | 45.0% | |
| TCTCTTGAGTTCGAACGACA+AGG | - | chr2.4:2760554-2760573 | None:intergenic | 45.0% | |
| TGCCCAAAGAAAAGAAGGAG+AGG | + | chr2.4:2760689-2760708 | MS.gene89104:CDS | 45.0% | |
| TTCCCAAATGGCTGGGAATA+TGG | - | chr2.4:2759855-2759874 | None:intergenic | 45.0% | |
| TTCTTGATGCTTGGGGTGAT+CGG | + | chr2.4:2760285-2760304 | MS.gene89104:CDS | 45.0% | |
| TTGATGAAGACCGGATAGGA+GGG | + | chr2.4:2759682-2759701 | MS.gene89104:CDS | 45.0% | |
| TTGATGAAGACCGGTTAGGA+GGG | + | chr2.4:2759643-2759662 | MS.gene89104:CDS | 45.0% | |
| ! | CTCCTTCTTTTCTTTGGGCA+AGG | - | chr2.4:2760689-2760708 | None:intergenic | 45.0% |
| ! | GCAGCTGCTAAACGATCTTT+TGG | + | chr2.4:2760215-2760234 | MS.gene89104:CDS | 45.0% |
| ! | GTTGTTGATGAAGACCGGAT+AGG | + | chr2.4:2759678-2759697 | MS.gene89104:CDS | 45.0% |
| ! | GTTGTTGATGAAGACCGGTT+AGG | + | chr2.4:2759639-2759658 | MS.gene89104:CDS | 45.0% |
| !! | ACAGAATCGGTTCGTGTAGA+AGG | + | chr2.4:2760653-2760672 | MS.gene89104:CDS | 45.0% |
| !! | ACCAACACCATATGGGTTAG+AGG | - | chr2.4:2759454-2759473 | None:intergenic | 45.0% |
| !! | CCAACACCATATGGGTTAGA+GGG | - | chr2.4:2759453-2759472 | None:intergenic | 45.0% |
| !! | CCTTACTGAATGGACTGAGA+AGG | + | chr2.4:2760250-2760269 | MS.gene89104:CDS | 45.0% |
| !! | GGGTGGTGGAGATAGAAAAT+GGG | + | chr2.4:2760472-2760491 | MS.gene89104:CDS | 45.0% |
| !! | TGGGTGGTGGAGATAGAAAA+TGG | + | chr2.4:2760471-2760490 | MS.gene89104:CDS | 45.0% |
| AGATGAAGAGCGGTTAGTGG+AGG | + | chr2.4:2759902-2759921 | MS.gene89104:CDS | 50.0% | |
| ATTGTCATCACCACCCCCAT+CGG | - | chr2.4:2759781-2759800 | None:intergenic | 50.0% | |
| CAATGACGAGGATGGGGATA+GGG | + | chr2.4:2760001-2760020 | MS.gene89104:CDS | 50.0% | |
| CCCTCTAACCCATATGGTGT+TGG | + | chr2.4:2759450-2759469 | MS.gene89104:CDS | 50.0% | |
| CGGGTAGATTCATTTGCAGC+TGG | - | chr2.4:2759540-2759559 | None:intergenic | 50.0% | |
| CGTCTTCATCCACCTGCTTT+AGG | - | chr2.4:2759752-2759771 | None:intergenic | 50.0% | |
| GACCGACAAAGCGAGGAATA+TGG | + | chr2.4:2759801-2759820 | MS.gene89104:CDS | 50.0% | |
| GACGATGAAGATCGGTTAGG+AGG | + | chr2.4:2759603-2759622 | MS.gene89104:CDS | 50.0% | |
| GATGAAGACGATGACACCGA+TGG | + | chr2.4:2759762-2759781 | MS.gene89104:CDS | 50.0% | |
| GCGATCTCAAACACCCTTTG+AGG | + | chr2.4:2759496-2759515 | MS.gene89104:CDS | 50.0% | |
| GGCCTTGCCCAAAGAAAAGA+AGG | + | chr2.4:2760684-2760703 | MS.gene89104:CDS | 50.0% | |
| TCCCAGCCATTTGGGAATGA+AGG | + | chr2.4:2759858-2759877 | MS.gene89104:CDS | 50.0% | |
| TGAAGACGATGACACCGATG+GGG | + | chr2.4:2759764-2759783 | MS.gene89104:CDS | 50.0% | |
| TGACAATGACCGACAAAGCG+AGG | + | chr2.4:2759794-2759813 | MS.gene89104:CDS | 50.0% | |
| ! | CAAGGGAGTCTTGCTTGTTG+TGG | - | chr2.4:2760536-2760555 | None:intergenic | 50.0% |
| ! | GTTGATGAAGACCGGATAGG+AGG | + | chr2.4:2759681-2759700 | MS.gene89104:CDS | 50.0% |
| ! | GTTGATGAAGACCGGTTAGG+AGG | + | chr2.4:2759642-2759661 | MS.gene89104:CDS | 50.0% |
| CATCACCGTTCCCTCCTAAC+CGG | - | chr2.4:2759656-2759675 | None:intergenic | 55.0% | |
| CGTTTAGCAGCTGCAGCTGA+CGG | - | chr2.4:2760209-2760228 | None:intergenic | 55.0% | |
| GAAGACCGGTTAGGAGGGAA+CGG | + | chr2.4:2759648-2759667 | MS.gene89104:CDS | 55.0% | |
| GAAGACGATGACACCGATGG+GGG | + | chr2.4:2759765-2759784 | MS.gene89104:CDS | 55.0% | |
| GCAATGACGAGGATGGGGAT+AGG | + | chr2.4:2760000-2760019 | MS.gene89104:CDS | 55.0% | |
| TGACGACGAGGATGGGGATA+GGG | + | chr2.4:2760034-2760053 | MS.gene89104:CDS | 55.0% | |
| TTGACGACGAGGATGGGGAT+AGG | + | chr2.4:2760033-2760052 | MS.gene89104:CDS | 55.0% | |
| !! | GGGAGTCTTGCTTGTTGTGG+TGG | - | chr2.4:2760533-2760552 | None:intergenic | 55.0% |
| GACGATGACACCGATGGGGG+TGG | + | chr2.4:2759768-2759787 | MS.gene89104:CDS | 65.0% | |
| GCAGCTGCAGCTGACGGTGT+TGG | - | chr2.4:2760203-2760222 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2759414 | 2760928 | 2759414 | ID=MS.gene89104 |
| chr2.4 | mRNA | 2759414 | 2760928 | 2759414 | ID=MS.gene89104.t1;Parent=MS.gene89104 |
| chr2.4 | exon | 2759414 | 2760928 | 2759414 | ID=MS.gene89104.t1.exon1;Parent=MS.gene89104.t1 |
| chr2.4 | CDS | 2759414 | 2760928 | 2759414 | ID=cds.MS.gene89104.t1;Parent=MS.gene89104.t1 |
| Gene Sequence |
| Protein sequence |
