AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81047


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81047.t1 MTR_8g023400 96.820 283 8 1 1 282 39 321 0.0 560
MS.gene81047.t1 MTR_7g117540 37.719 228 107 5 1 224 34 230 1.12e-33 124
MS.gene81047.t1 MTR_4g120270 41.935 155 63 7 6 142 36 181 2.34e-29 112
MS.gene81047.t1 MTR_2g436100 35.484 155 83 5 1 143 43 192 2.75e-24 99.4
MS.gene81047.t1 MTR_3g464780 34.868 152 80 4 12 144 47 198 1.28e-22 94.4
MS.gene81047.t1 MTR_5g064890 29.798 198 133 4 1 193 72 268 5.77e-22 94.4
MS.gene81047.t1 MTR_4g129420 38.793 116 62 3 8 121 78 186 1.22e-20 91.7
MS.gene81047.t1 MTR_5g034790 48.052 77 39 1 47 122 109 185 1.29e-20 90.5
MS.gene81047.t1 MTR_5g024730 41.026 117 61 3 54 166 77 189 1.84e-20 87.4
MS.gene81047.t1 MTR_5g071930 37.097 124 60 3 10 127 26 137 4.02e-20 86.3
MS.gene81047.t1 MTR_3g110190 52.778 72 33 1 54 124 66 137 5.44e-20 88.6
MS.gene81047.t1 MTR_4g106680 38.636 132 66 5 47 165 99 228 1.76e-19 86.7
MS.gene81047.t1 MTR_6g087150 37.209 129 71 3 54 181 93 212 2.19e-19 87.4
MS.gene81047.t1 MTR_8g063660 48.684 76 38 1 47 121 61 136 2.29e-19 86.7
MS.gene81047.t1 MTR_4g093830 32.143 168 103 3 2 158 68 235 5.06e-19 85.9
MS.gene81047.t1 MTR_8g092840 46.835 79 39 2 54 130 113 190 6.52e-19 83.6
MS.gene81047.t1 MTR_3g116000 44.737 76 42 0 54 129 79 154 6.65e-19 82.8
MS.gene81047.t1 MTR_8g092960 46.835 79 39 2 54 130 103 180 7.03e-19 83.2
MS.gene81047.t1 MTR_1g074190 36.975 119 61 3 17 128 69 180 8.03e-19 85.5
MS.gene81047.t1 MTR_8g089880 36.792 106 56 2 53 157 126 221 1.07e-18 84.0
MS.gene81047.t1 MTR_5g066250 50.685 73 35 1 54 125 134 206 1.15e-18 85.5
MS.gene81047.t1 MTR_1g100737 47.297 74 33 1 54 121 92 165 2.10e-18 81.6
MS.gene81047.t1 MTR_7g073200 35.461 141 86 3 5 143 34 171 3.02e-18 80.5
MS.gene81047.t1 MTR_3g094000 47.222 72 35 1 54 122 91 162 3.51e-18 80.5
MS.gene81047.t1 MTR_8g093010 41.935 93 50 3 40 130 94 184 4.62e-18 81.3
MS.gene81047.t1 MTR_3g100400 48.000 75 38 1 54 127 130 204 6.94e-18 83.2
MS.gene81047.t1 MTR_1g043410 42.157 102 51 4 33 126 69 170 6.98e-18 82.4
MS.gene81047.t1 MTR_6g007737 48.750 80 32 2 47 121 126 201 8.19e-18 82.8
MS.gene81047.t1 MTR_7g113800 43.678 87 42 3 45 124 80 166 8.23e-18 82.8
MS.gene81047.t1 MTR_4g063070 37.600 125 64 5 4 121 261 378 1.23e-17 82.4
MS.gene81047.t1 MTR_2g096350 42.308 104 48 3 24 124 86 180 1.29e-17 79.7
MS.gene81047.t1 MTR_8g092930 35.652 115 67 3 54 166 112 221 1.56e-17 79.7
MS.gene81047.t1 MTR_8g092985 44.304 79 41 2 54 130 111 188 1.75e-17 79.3
MS.gene81047.t1 MTR_8g073120 41.250 80 44 1 54 130 70 149 2.28e-17 79.0
MS.gene81047.t1 MTR_3g091620 40.230 87 46 2 43 128 95 176 2.30e-17 81.3
MS.gene81047.t1 MTR_3g095560 46.154 78 39 2 54 129 109 185 4.28e-17 79.0
MS.gene81047.t1 MTR_1g082550 47.368 76 35 2 54 124 98 173 4.42e-17 80.5
MS.gene81047.t1 MTR_5g030010 48.611 72 36 1 54 124 122 193 6.27e-17 80.1
MS.gene81047.t1 MTR_2g090950 46.154 78 35 1 54 124 91 168 6.68e-17 78.2
MS.gene81047.t1 MTR_6g055030 46.914 81 39 2 54 130 97 177 8.03e-17 79.3
MS.gene81047.t1 MTR_7g076250 41.463 82 38 2 42 121 59 132 9.41e-17 77.0
MS.gene81047.t1 MTR_2g009310 43.038 79 44 1 44 121 125 203 1.11e-16 79.7
MS.gene81047.t1 MTR_2g090905 44.156 77 36 1 55 124 40 116 1.34e-16 74.7
MS.gene81047.t1 MTR_5g064990 37.600 125 68 4 4 121 64 185 1.53e-16 79.3
MS.gene81047.t1 MTR_7g108855 37.143 140 68 5 32 167 47 170 2.05e-16 76.3
MS.gene81047.t1 MTR_5g082940 31.858 113 62 2 18 127 51 151 2.65e-16 75.1
MS.gene81047.t1 MTR_1g090480 33.071 127 74 3 1 122 25 145 4.02e-16 74.7
MS.gene81047.t1 MTR_3g099650 36.719 128 70 6 4 124 59 182 5.18e-16 77.4
MS.gene81047.t1 MTR_4g030070 46.479 71 34 3 53 121 84 152 5.21e-16 75.5
MS.gene81047.t1 MTR_3g086730 40.952 105 50 3 58 150 50 154 8.72e-16 75.1
MS.gene81047.t1 MTR_1g070140 41.892 74 41 1 54 125 103 176 2.77e-15 75.1
MS.gene81047.t1 MTR_8g092970 40.244 82 44 2 78 159 130 206 2.86e-15 73.6
MS.gene81047.t1 MTR_2g055790 47.059 68 34 1 54 121 77 142 3.23e-15 72.8
MS.gene81047.t1 MTR_8g092990 52.830 53 24 1 78 130 140 191 3.77e-15 73.2
MS.gene81047.t1 MTR_3g086700 50.725 69 30 2 58 122 50 118 4.54e-15 72.4
MS.gene81047.t1 MTR_4g094725 42.105 76 41 1 54 126 78 153 8.99e-15 70.5
MS.gene81047.t1 MTR_5g026730 59.574 47 19 0 75 121 90 136 2.18e-14 70.1
MS.gene81047.t1 MTR_3g012550 38.961 77 44 1 49 122 75 151 2.27e-14 70.1
MS.gene81047.t1 MTR_5g064980 44.444 72 36 2 54 121 108 179 3.38e-14 72.4
MS.gene81047.t1 MTR_3g114500 48.529 68 33 1 54 121 48 113 3.48e-14 68.2
MS.gene81047.t1 MTR_8g066780 46.667 75 37 2 53 124 113 187 3.96e-14 72.0
MS.gene81047.t1 MTR_1g492830 35.106 94 59 1 30 121 37 130 5.05e-14 70.1
MS.gene81047.t1 MTR_3g071300 30.147 136 77 4 2 132 37 159 5.62e-14 68.9
MS.gene81047.t1 MTR_1g026070 40.244 82 47 1 54 135 48 127 7.57e-14 67.4
MS.gene81047.t1 MTR_8g066740 38.710 93 45 3 54 139 76 163 8.36e-14 70.5
MS.gene81047.t1 MTR_7g116220 38.667 75 38 2 54 122 70 142 1.00e-13 68.2
MS.gene81047.t1 MTR_2g035800 42.466 73 39 2 54 124 76 147 1.22e-13 67.8
MS.gene81047.t1 MTR_5g026720 56.250 48 21 0 75 122 89 136 1.34e-13 67.4
MS.gene81047.t1 MTR_4g056590 41.096 73 41 2 54 126 100 170 1.98e-13 67.8
MS.gene81047.t1 MTR_6g007680 39.024 82 49 1 60 140 46 127 2.55e-13 66.6
MS.gene81047.t1 MTR_8g071815 45.455 66 32 1 77 138 88 153 2.23e-12 64.7
MS.gene81047.t1 MTR_1g090460 44.776 67 32 1 62 123 73 139 2.44e-12 63.9
MS.gene81047.t1 MTR_3g078450 36.000 75 45 1 51 122 73 147 3.15e-12 65.1
MS.gene81047.t1 MTR_7g079280 35.616 73 44 1 53 122 79 151 3.22e-12 64.3
MS.gene81047.t1 MTR_5g076990 36.264 91 50 3 54 139 76 163 3.34e-12 65.9
MS.gene81047.t1 MTR_7g116180 37.838 74 40 2 54 122 67 139 3.42e-12 63.9
MS.gene81047.t1 MTR_7g096690 35.165 91 51 3 43 125 56 146 4.87e-12 65.5
MS.gene81047.t1 MTR_2g041200 59.574 47 19 0 78 124 108 154 5.39e-12 63.5
MS.gene81047.t1 MTR_7g116200 36.232 69 44 0 54 122 68 136 5.51e-12 63.2
MS.gene81047.t1 MTR_1g070425 37.838 74 40 2 54 122 68 140 5.65e-12 63.5
MS.gene81047.t1 MTR_8g099495 51.111 45 22 0 79 123 347 391 6.57e-12 65.5
MS.gene81047.t1 MTR_7g079290 35.897 78 41 2 54 124 125 200 6.91e-12 63.9
MS.gene81047.t1 MTR_5g022920 57.778 45 19 0 77 121 187 231 7.37e-12 64.3
MS.gene81047.t1 MTR_6g007670 30.769 104 65 1 60 163 14 110 7.62e-12 64.3
MS.gene81047.t1 MTR_8g028465 37.143 70 43 1 53 122 89 157 9.00e-12 63.5
MS.gene81047.t1 MTR_6g055030 56.000 50 22 0 81 130 97 146 9.66e-12 64.3
MS.gene81047.t1 MTR_7g059360 45.902 61 31 1 67 125 144 204 9.67e-12 63.9
MS.gene81047.t1 MTR_8g032690 53.488 43 20 0 79 121 19 61 1.31e-11 60.5
MS.gene81047.t1 MTR_4g108830 42.857 70 38 2 54 122 121 189 1.79e-11 62.4
MS.gene81047.t1 MTR_4g108830 42.857 70 38 2 54 122 149 217 1.88e-11 62.8
MS.gene81047.t1 MTR_3g081030 44.444 72 36 3 52 121 92 161 1.93e-11 62.8
MS.gene81047.t1 MTR_3g078470 36.000 75 45 1 51 122 73 147 2.01e-11 62.8
MS.gene81047.t1 MTR_4g022410 52.000 50 24 0 76 125 110 159 2.48e-11 62.0
MS.gene81047.t1 MTR_7g116210 35.294 68 44 0 54 121 10 77 4.00e-11 59.3
MS.gene81047.t1 MTR_1g096780 42.254 71 37 3 54 121 208 277 4.28e-11 63.2
MS.gene81047.t1 MTR_5g009210 53.333 45 21 0 79 123 315 359 5.44e-11 62.8
MS.gene81047.t1 MTR_5g009200 53.333 45 21 0 79 123 350 394 6.57e-11 62.8
MS.gene81047.t1 MTR_4g077570 49.020 51 22 2 74 121 6 55 8.98e-11 57.4
MS.gene81047.t1 MTR_2g044570 53.191 47 22 0 78 124 82 128 9.89e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81047.t1 AT1G53820 45.263 285 100 11 12 265 45 304 8.66e-61 195
MS.gene81047.t1 AT1G72310 39.100 289 133 6 1 266 34 302 3.97e-57 186
MS.gene81047.t1 AT3G16720 35.379 277 132 12 1 272 40 274 8.11e-34 125
MS.gene81047.t1 AT4G15975 42.241 116 55 3 9 124 18 121 4.19e-24 97.8
MS.gene81047.t1 AT3G14320 47.368 76 40 0 52 127 61 136 2.35e-22 92.4
MS.gene81047.t1 AT1G49220 47.170 106 45 4 32 130 84 185 4.04e-22 92.8
MS.gene81047.t1 AT5G05280 48.810 84 42 1 39 121 72 155 4.36e-22 90.9
MS.gene81047.t1 AT5G17600 46.667 105 51 3 54 157 116 216 4.67e-22 94.7
MS.gene81047.t1 AT1G23980 36.000 125 75 3 2 121 62 186 1.06e-20 90.9
MS.gene81047.t1 AT2G20030 52.000 75 35 1 54 127 98 172 1.35e-20 90.9
MS.gene81047.t1 AT3G18773 41.584 101 56 2 54 152 103 202 1.50e-20 87.8
MS.gene81047.t1 AT1G04360 41.667 108 49 4 32 128 79 183 2.37e-20 90.1
MS.gene81047.t1 AT1G49210 50.633 79 36 2 54 130 108 185 7.19e-20 86.3
MS.gene81047.t1 AT1G49200 48.810 84 40 2 49 130 104 186 9.00e-20 85.9
MS.gene81047.t1 AT3G62690 36.800 125 74 2 1 124 38 158 1.79e-19 85.9
MS.gene81047.t1 AT1G20823 44.944 89 45 2 43 129 75 161 1.84e-19 84.3
MS.gene81047.t1 AT3G48030 33.333 138 88 2 1 136 51 186 2.33e-19 85.9
MS.gene81047.t1 AT5G05810 52.000 75 35 1 54 127 120 194 2.61e-19 87.4
MS.gene81047.t1 AT4G40070 44.444 90 46 2 50 135 91 180 2.98e-19 86.3
MS.gene81047.t1 AT3G10910 44.565 92 48 2 54 143 88 178 3.66e-19 83.2
MS.gene81047.t1 AT2G35000 32.432 222 138 7 1 212 52 271 6.31e-19 85.9
MS.gene81047.t1 AT4G28890 44.792 96 50 2 54 148 97 190 6.90e-19 86.3
MS.gene81047.t1 AT1G76410 42.529 87 47 2 45 129 69 154 7.05e-19 82.4
MS.gene81047.t1 AT3G48030 33.333 138 88 2 1 136 129 264 7.25e-19 85.5
MS.gene81047.t1 AT4G30400 42.157 102 52 3 25 121 77 176 1.29e-18 85.9
MS.gene81047.t1 AT5G43420 35.570 149 72 5 32 161 78 221 2.32e-18 84.3
MS.gene81047.t1 AT5G10380 52.857 70 32 1 53 121 108 177 5.72e-18 82.4
MS.gene81047.t1 AT3G03550 38.182 110 55 2 55 151 134 243 6.96e-18 82.8
MS.gene81047.t1 AT2G42360 36.000 125 65 2 2 124 42 153 6.97e-18 80.9
MS.gene81047.t1 AT2G18650 45.977 87 44 3 42 125 87 173 1.68e-17 82.4
MS.gene81047.t1 AT3G19140 41.176 85 44 1 43 121 37 121 1.90e-17 77.4
MS.gene81047.t1 AT5G01880 45.833 72 38 1 52 122 77 148 2.25e-17 77.8
MS.gene81047.t1 AT3G05200 37.500 104 56 3 54 148 99 202 3.31e-17 81.3
MS.gene81047.t1 AT4G10150 39.080 87 51 1 35 121 69 153 4.37e-17 79.0
MS.gene81047.t1 AT1G33480 40.698 86 48 1 36 121 60 142 4.58e-17 79.3
MS.gene81047.t1 AT5G40250 45.570 79 32 1 54 121 107 185 4.63e-17 80.5
MS.gene81047.t1 AT4G17905 33.000 200 103 8 44 234 117 294 5.24e-17 79.7
MS.gene81047.t1 AT4G33565 36.792 106 66 1 44 148 181 286 5.89e-17 80.5
MS.gene81047.t1 AT4G17905 33.000 200 103 8 44 234 143 320 7.93e-17 79.7
MS.gene81047.t1 AT4G10160 41.667 72 42 0 50 121 68 139 1.01e-16 77.8
MS.gene81047.t1 AT2G17450 40.777 103 48 3 35 129 55 152 1.09e-16 76.6
MS.gene81047.t1 AT1G49230 40.659 91 51 2 54 142 104 193 2.13e-16 76.6
MS.gene81047.t1 AT4G09120 38.144 97 55 2 35 127 76 171 2.53e-16 78.2
MS.gene81047.t1 AT2G27940 41.096 73 43 0 50 122 111 183 3.69e-16 76.3
MS.gene81047.t1 AT2G42350 40.230 87 52 0 35 121 56 142 4.88e-16 75.5
MS.gene81047.t1 AT2G47560 36.220 127 67 3 1 124 38 153 5.66e-16 75.5
MS.gene81047.t1 AT5G27420 41.463 82 44 2 54 131 95 176 5.67e-16 77.4
MS.gene81047.t1 AT1G72200 35.294 119 60 3 54 155 115 233 7.04e-16 77.4
MS.gene81047.t1 AT4G09110 38.144 97 55 2 35 127 76 171 7.72e-16 76.3
MS.gene81047.t1 AT1G32361 36.364 99 56 3 29 127 111 202 7.73e-16 76.6
MS.gene81047.t1 AT5G42200 35.593 118 59 3 5 121 45 146 9.25e-16 73.6
MS.gene81047.t1 AT2G34990 43.056 72 37 1 54 121 89 160 9.30e-16 76.6
MS.gene81047.t1 AT2G34990 43.056 72 37 1 54 121 67 138 1.09e-15 75.9
MS.gene81047.t1 AT1G72220 44.595 74 40 1 54 126 151 224 1.16e-15 77.0
MS.gene81047.t1 AT4G09130 37.363 91 53 2 42 128 79 169 1.66e-15 75.9
MS.gene81047.t1 AT2G35420 32.520 123 73 4 2 121 30 145 2.33e-15 74.3
MS.gene81047.t1 AT1G74410 42.500 80 44 2 47 124 142 221 2.33e-15 73.9
MS.gene81047.t1 AT4G17920 39.394 99 55 2 54 148 81 178 5.00e-15 73.9
MS.gene81047.t1 AT5G07040 39.189 74 42 1 52 122 64 137 6.87e-15 71.2
MS.gene81047.t1 AT3G18930 36.559 93 47 2 44 124 109 201 1.31e-14 73.6
MS.gene81047.t1 AT3G18930 36.559 93 47 2 44 124 109 201 1.31e-14 73.6
MS.gene81047.t1 AT3G18930 36.559 93 47 2 44 124 109 201 1.31e-14 73.6
MS.gene81047.t1 AT5G57750 40.000 80 40 2 48 122 89 165 1.40e-14 71.2
MS.gene81047.t1 AT1G22500 40.217 92 50 2 40 126 75 166 1.93e-14 73.2
MS.gene81047.t1 AT5G58580 39.286 112 60 3 54 157 111 222 2.64e-14 72.0
MS.gene81047.t1 AT4G09100 44.000 75 38 1 54 124 56 130 3.56e-14 68.6
MS.gene81047.t1 AT1G35330 41.667 72 38 1 54 121 100 171 9.35e-14 70.9
MS.gene81047.t1 AT3G61550 31.034 116 60 4 20 122 71 179 4.03e-13 67.4
MS.gene81047.t1 AT4G24015 39.773 88 51 2 53 139 79 165 8.87e-13 65.5
MS.gene81047.t1 AT5G46650 47.297 74 32 3 54 121 85 157 1.12e-12 67.4
MS.gene81047.t1 AT3G60220 38.372 86 46 2 44 122 75 160 1.46e-12 67.4
MS.gene81047.t1 AT2G46493 45.833 48 26 0 75 122 134 181 1.88e-12 65.1
MS.gene81047.t1 AT4G35480 38.889 72 44 0 72 143 106 177 1.98e-12 65.1
MS.gene81047.t1 AT2G46160 30.612 98 57 2 36 122 84 181 2.52e-12 65.1
MS.gene81047.t1 AT2G46160 30.612 98 57 2 36 122 84 181 2.52e-12 65.1
MS.gene81047.t1 AT1G71980 36.782 87 51 3 54 137 205 290 3.17e-12 66.6
MS.gene81047.t1 AT5G06490 34.615 78 43 1 53 122 95 172 4.40e-12 64.3
MS.gene81047.t1 AT2G44578 58.140 43 18 0 79 121 70 112 6.23e-12 62.8
MS.gene81047.t1 AT2G46494 47.917 48 25 0 75 122 312 359 7.04e-12 65.5
MS.gene81047.t1 AT5G53110 36.735 98 54 3 33 122 276 373 7.25e-12 65.5
MS.gene81047.t1 AT5G66070 54.348 46 21 0 77 122 174 219 1.30e-11 63.2
MS.gene81047.t1 AT5G66070 54.348 46 21 0 77 122 174 219 1.30e-11 63.2
MS.gene81047.t1 AT5G47610 41.270 63 35 1 64 124 90 152 1.80e-11 61.6
MS.gene81047.t1 AT2G17730 40.278 72 39 1 54 121 167 238 1.97e-11 63.2
MS.gene81047.t1 AT5G66070 55.556 45 20 0 77 121 198 242 2.02e-11 63.2
MS.gene81047.t1 AT2G34000 33.333 99 58 2 33 123 37 135 2.03e-11 61.2
MS.gene81047.t1 AT1G28040 45.833 48 26 0 75 122 249 296 2.73e-11 63.2
MS.gene81047.t1 AT1G22670 35.632 87 52 3 54 137 205 290 6.15e-11 62.8
MS.gene81047.t1 AT3G60966 60.465 43 17 0 79 121 62 104 8.20e-11 59.3
MS.gene81047.t1 AT2G44581 53.488 43 20 0 79 121 70 112 8.73e-11 59.3
MS.gene81047.t1 AT2G46495 45.833 48 26 0 75 122 316 363 8.95e-11 62.0
MS.gene81047.t1 AT2G46495 45.833 48 26 0 75 122 288 335 9.37e-11 62.0

Find 49 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAAGATCCTGTTGTTTA+TGG 0.168039 8.4:+71508970 MS.gene81047:CDS
CCATTTGAATCAGTACTATT+TGG 0.192512 8.4:-71509237 None:intergenic
TCTTAAGTCTTTGCCTGTTT+TGG 0.218884 8.4:+71509023 MS.gene81047:CDS
TGAAACCCATGATTGCATTT+TGG 0.226368 8.4:-71509132 None:intergenic
CGTCGACGACGGCGGTTTCT+TGG 0.237232 8.4:-71508928 None:intergenic
ATTCTACTTGTCCTCTTTGT+AGG 0.257676 8.4:+71509187 MS.gene81047:CDS
ATTTATATGCAAAGTGGTTT+TGG 0.278266 8.4:+71508875 MS.gene81047:CDS
TCCTTCAACTCCAAGTTCTA+TGG 0.291895 8.4:+71509650 MS.gene81047:CDS
AAATTTCCCTACAAATGTTT+TGG 0.305638 8.4:+71509329 MS.gene81047:CDS
GTTTATGGAAGTCACCAAAT+TGG 0.322819 8.4:+71508985 MS.gene81047:CDS
ACATCATCATCATCTACTTT+AGG 0.335783 8.4:+71509435 MS.gene81047:CDS
ACACAAGTTAGTTCTTCTTT+TGG 0.347982 8.4:+71509369 MS.gene81047:CDS
TGAGGATTTCAAAGATGGTT+TGG 0.348325 8.4:+71509056 MS.gene81047:CDS
CAAGATTGAGATCATTTAAG+AGG 0.369842 8.4:+71509601 MS.gene81047:CDS
AGTAATAGATGCAATGGAAA+TGG 0.383393 8.4:+71509474 MS.gene81047:CDS
CCCCAAACCAAAACATTTGT+AGG 0.395435 8.4:-71509336 None:intergenic
AAGAATGAGGATTTCAAAGA+TGG 0.398458 8.4:+71509051 MS.gene81047:CDS
TCTACTTTAGGTAGTGATAA+TGG 0.408867 8.4:+71509447 MS.gene81047:CDS
TGTCTTTGTGATGTTGTTGA+AGG 0.438454 8.4:+71509090 MS.gene81047:CDS
TCATTCTTGAAAACCAAAAC+AGG 0.442504 8.4:-71509036 None:intergenic
TCCATAGAACTTGGAGTTGA+AGG 0.444903 8.4:-71509651 None:intergenic
ATTTAGATTGTATTGATATG+TGG 0.449698 8.4:+71509154 MS.gene81047:CDS
TGGTGACTTCCATAAACAAC+AGG 0.454316 8.4:-71508979 None:intergenic
CGACGGCGGTTTCTTGGTTG+AGG 0.455007 8.4:-71508922 None:intergenic
TTTGGTGTTTCTTTGGAAGA+AGG 0.471878 8.4:+71509387 MS.gene81047:CDS
TGTTCCACATCCATAGAACT+TGG 0.475183 8.4:-71509660 None:intergenic
AACTCCAAGTTCTATGGATG+TGG 0.479911 8.4:+71509656 MS.gene81047:CDS
GAGGAAGAACTAAACTCTCT+TGG 0.492277 8.4:-71509522 None:intergenic
GGTAATAGTAATAGATGCAA+TGG 0.506680 8.4:+71509468 MS.gene81047:CDS
CCAAATAGTACTGATTCAAA+TGG 0.506743 8.4:+71509237 MS.gene81047:CDS
GTCACTAGCACTATTAGCTC+TGG 0.507539 8.4:-71509686 None:intergenic
AAACAAACCGCCGTCGACGA+CGG 0.534947 8.4:-71508939 None:intergenic
CCCAAACCAAAACATTTGTA+GGG 0.536138 8.4:-71509335 None:intergenic
TGCTTCATTTATATGCAAAG+TGG 0.539115 8.4:+71508869 MS.gene81047:CDS
GATCTCAATCTTGTTGCCAT+TGG 0.564352 8.4:-71509591 None:intergenic
GAAACTAAATTCCTACAAAG+AGG 0.564972 8.4:-71509198 None:intergenic
ATGCAATGGAAATGGAATGT+TGG 0.570708 8.4:+71509482 MS.gene81047:CDS
CAAGAAACCGCCGTCGTCGA+CGG 0.576823 8.4:+71508929 MS.gene81047:CDS
AGTTCTATGGATGTGGAACA+AGG 0.581073 8.4:+71509663 MS.gene81047:CDS
GAACTAAACTCTCTTGGCAA+TGG 0.586066 8.4:-71509516 None:intergenic
GAAAATTTGAGTCATGTGAA+TGG 0.596814 8.4:+71509294 MS.gene81047:CDS
AGATGAAATGAAATCACCAA+TGG 0.606642 8.4:+71509575 MS.gene81047:CDS
TCAACACAGCTATTATCAGA+AGG 0.635451 8.4:-71509552 None:intergenic
CAAACCGCCGTCGACGACGG+CGG 0.650391 8.4:-71508936 None:intergenic
GAAACCGCCGTCGTCGACGG+CGG 0.652134 8.4:+71508932 MS.gene81047:CDS
ATTATCAGAAGGTGACAATG+AGG 0.653561 8.4:-71509541 None:intergenic
TAAACAACAGGATCTTGACC+AGG 0.667684 8.4:-71508967 None:intergenic
AATGTGTTAGTGTCATCAGA+AGG 0.695473 8.4:+71509270 MS.gene81047:CDS
GATGATGATGATGTTGAACA+AGG 0.699539 8.4:-71509426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGATTGTATTGATATG+TGG + chr8.4:71509154-71509173 MS.gene81047:CDS 20.0%
!! AAATTTCCCTACAAATGTTT+TGG + chr8.4:71509329-71509348 MS.gene81047:CDS 25.0%
!! ATTTATATGCAAAGTGGTTT+TGG + chr8.4:71508875-71508894 MS.gene81047:CDS 25.0%
!! TTTTACCAAAATGCAATCAT+GGG + chr8.4:71509127-71509146 MS.gene81047:CDS 25.0%
AAGAATGAGGATTTCAAAGA+TGG + chr8.4:71509051-71509070 MS.gene81047:CDS 30.0%
ACATCATCATCATCTACTTT+AGG + chr8.4:71509435-71509454 MS.gene81047:CDS 30.0%
AGATGAAATGAAATCACCAA+TGG + chr8.4:71509575-71509594 MS.gene81047:CDS 30.0%
AGTAATAGATGCAATGGAAA+TGG + chr8.4:71509474-71509493 MS.gene81047:CDS 30.0%
CAAGATTGAGATCATTTAAG+AGG + chr8.4:71509601-71509620 MS.gene81047:CDS 30.0%
CCATTTGAATCAGTACTATT+TGG - chr8.4:71509240-71509259 None:intergenic 30.0%
GAAAATTTGAGTCATGTGAA+TGG + chr8.4:71509294-71509313 MS.gene81047:CDS 30.0%
GAAACTAAATTCCTACAAAG+AGG - chr8.4:71509201-71509220 None:intergenic 30.0%
GGTAATAGTAATAGATGCAA+TGG + chr8.4:71509468-71509487 MS.gene81047:CDS 30.0%
TCATTCTTGAAAACCAAAAC+AGG - chr8.4:71509039-71509058 None:intergenic 30.0%
TCTACTTTAGGTAGTGATAA+TGG + chr8.4:71509447-71509466 MS.gene81047:CDS 30.0%
TGCTTCATTTATATGCAAAG+TGG + chr8.4:71508869-71508888 MS.gene81047:CDS 30.0%
! CTTTTACCAAAATGCAATCA+TGG + chr8.4:71509126-71509145 MS.gene81047:CDS 30.0%
!! ACACAAGTTAGTTCTTCTTT+TGG + chr8.4:71509369-71509388 MS.gene81047:CDS 30.0%
!! CCAAATAGTACTGATTCAAA+TGG + chr8.4:71509237-71509256 MS.gene81047:CDS 30.0%
!!! TGTTTTGGTTTTCAAGAATG+AGG + chr8.4:71509038-71509057 MS.gene81047:CDS 30.0%
!!! TTCTTCTTTTGGTGTTTCTT+TGG + chr8.4:71509380-71509399 MS.gene81047:CDS 30.0%
!!! TTTTAGCTTCAAGTCCAATT+TGG - chr8.4:71509002-71509021 None:intergenic 30.0%
AATGTGTTAGTGTCATCAGA+AGG + chr8.4:71509270-71509289 MS.gene81047:CDS 35.0%
ATGCAATGGAAATGGAATGT+TGG + chr8.4:71509482-71509501 MS.gene81047:CDS 35.0%
ATTATCAGAAGGTGACAATG+AGG - chr8.4:71509544-71509563 None:intergenic 35.0%
ATTCTACTTGTCCTCTTTGT+AGG + chr8.4:71509187-71509206 MS.gene81047:CDS 35.0%
CCCAAACCAAAACATTTGTA+GGG - chr8.4:71509338-71509357 None:intergenic 35.0%
GTTTATGGAAGTCACCAAAT+TGG + chr8.4:71508985-71509004 MS.gene81047:CDS 35.0%
TCAACACAGCTATTATCAGA+AGG - chr8.4:71509555-71509574 None:intergenic 35.0%
TGAGGATTTCAAAGATGGTT+TGG + chr8.4:71509056-71509075 MS.gene81047:CDS 35.0%
TGTCTTTGTGATGTTGTTGA+AGG + chr8.4:71509090-71509109 MS.gene81047:CDS 35.0%
! GATGATGATGATGTTGAACA+AGG - chr8.4:71509429-71509448 None:intergenic 35.0%
! TCTTAAGTCTTTGCCTGTTT+TGG + chr8.4:71509023-71509042 MS.gene81047:CDS 35.0%
! TGAAACCCATGATTGCATTT+TGG - chr8.4:71509135-71509154 None:intergenic 35.0%
!! TTTGGTGTTTCTTTGGAAGA+AGG + chr8.4:71509387-71509406 MS.gene81047:CDS 35.0%
!!! CCCTACAAATGTTTTGGTTT+GGG + chr8.4:71509335-71509354 MS.gene81047:CDS 35.0%
!!! CCTACAAATGTTTTGGTTTG+GGG + chr8.4:71509336-71509355 MS.gene81047:CDS 35.0%
!!! CTACAAATGTTTTGGTTTGG+GGG + chr8.4:71509337-71509356 MS.gene81047:CDS 35.0%
!!! TATATGCAAAGTGGTTTTGG+TGG + chr8.4:71508878-71508897 MS.gene81047:CDS 35.0%
!!! TCCCTACAAATGTTTTGGTT+TGG + chr8.4:71509334-71509353 MS.gene81047:CDS 35.0%
AACTCCAAGTTCTATGGATG+TGG + chr8.4:71509656-71509675 MS.gene81047:CDS 40.0%
AGTTCTATGGATGTGGAACA+AGG + chr8.4:71509663-71509682 MS.gene81047:CDS 40.0%
CCCCAAACCAAAACATTTGT+AGG - chr8.4:71509339-71509358 None:intergenic 40.0%
GAACTAAACTCTCTTGGCAA+TGG - chr8.4:71509519-71509538 None:intergenic 40.0%
GAGGAAGAACTAAACTCTCT+TGG - chr8.4:71509525-71509544 None:intergenic 40.0%
GATCTCAATCTTGTTGCCAT+TGG - chr8.4:71509594-71509613 None:intergenic 40.0%
TAAACAACAGGATCTTGACC+AGG - chr8.4:71508970-71508989 None:intergenic 40.0%
TCCATAGAACTTGGAGTTGA+AGG - chr8.4:71509654-71509673 None:intergenic 40.0%
TCCTTCAACTCCAAGTTCTA+TGG + chr8.4:71509650-71509669 MS.gene81047:CDS 40.0%
TGGTGACTTCCATAAACAAC+AGG - chr8.4:71508982-71509001 None:intergenic 40.0%
TGTTCCACATCCATAGAACT+TGG - chr8.4:71509663-71509682 None:intergenic 40.0%
! GGTCAAGATCCTGTTGTTTA+TGG + chr8.4:71508970-71508989 MS.gene81047:CDS 40.0%
!!! GTGGTTTTGGTGGCGTTTTG+AGG + chr8.4:71508888-71508907 MS.gene81047:CDS 50.0%
AAACAAACCGCCGTCGACGA+CGG - chr8.4:71508942-71508961 None:intergenic 55.0%
!!! CGGCGGTTTGTTTTTGCTCC+TGG + chr8.4:71508949-71508968 MS.gene81047:CDS 55.0%
CAAGAAACCGCCGTCGTCGA+CGG + chr8.4:71508929-71508948 MS.gene81047:CDS 60.0%
CGACGGCGGTTTCTTGGTTG+AGG - chr8.4:71508925-71508944 None:intergenic 60.0%
CGTCGACGACGGCGGTTTCT+TGG - chr8.4:71508931-71508950 None:intergenic 65.0%
CAAACCGCCGTCGACGACGG+CGG - chr8.4:71508939-71508958 None:intergenic 70.0%
GAAACCGCCGTCGTCGACGG+CGG + chr8.4:71508932-71508951 MS.gene81047:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 71508847 71509695 71508847 ID=MS.gene81047
chr8.4 mRNA 71508847 71509695 71508847 ID=MS.gene81047.t1;Parent=MS.gene81047
chr8.4 exon 71508847 71509695 71508847 ID=MS.gene81047.t1.exon1;Parent=MS.gene81047.t1
chr8.4 CDS 71508847 71509695 71508847 ID=cds.MS.gene81047.t1;Parent=MS.gene81047.t1
Gene Sequence

>MS.gene81047

ATGGTTGTTATGTTTGTTCTAATGCTTCATTTATATGCAAAGTGGTTTTGGTGGCGTTTTGAGGAAAGAACTGTTCCTCAACCAAGAAACCGCCGTCGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTTTATGGAAGTCACCAAATTGGACTTGAAGCTAAAATTCTTAAGTCTTTGCCTGTTTTGGTTTTCAAGAATGAGGATTTCAAAGATGGTTTGGAATGTGCTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAACTAGACTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATCATGTAAACCAAATAGTACTGATTCAAATGGTGAAGAGATGAATGTGTTAGTGTCATCAGAAGGTGAAAATTTGAGTCATGTGAATGGTCTAGAGTCTTCAAATTTCCCTACAAATGTTTTGGTTTGGGGGAATTCTCAAACACAAGTTAGTTCTTCTTTTGGTGTTTCTTTGGAAGAAGGAAGTTCTCATCAACAACCTTGTTCAACATCATCATCATCTACTTTAGGTAGTGATAATGGTAATAGTAATAGATGCAATGGAAATGGAATGTTGGTGATTGATATACCATTGCCAAGAGAGTTTAGTTCTTCCTCATTGTCACCTTCTGATAATAGCTGTGTTGAAGATGAAATGAAATCACCAATGGCAACAAGATTGAGATCATTTAAGAGGCTTTTAAGTAGAGACAAAAAGTTTAGTCCTTCAACTCCAAGTTCTATGGATGTGGAACAAGGCCAGAGCTAA

Protein sequence

>MS.gene81047.t1

MVVMFVLMLHLYAKWFWWRFEERTVPQPRNRRRRRRFVFAPGQDPVVYGSHQIGLEAKILKSLPVLVFKNEDFKDGLECAVCLCDVVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESCKPNSTDSNGEEMNVLVSSEGENLSHVNGLESSNFPTNVLVWGNSQTQVSSSFGVSLEEGSSHQQPCSTSSSSTLGSDNGNSNRCNGNGMLVIDIPLPREFSSSSLSPSDNSCVEDEMKSPMATRLRSFKRLLSRDKKFSPSTPSSMDVEQGQS