Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066319.t1 | XP_013464200.1 | 99.4 | 164 | 1 | 0 | 1 | 164 | 96 | 259 | 4.30E-90 | 340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066319.t1 | Q9VUQ8 | 45.6 | 149 | 80 | 1 | 1 | 149 | 99 | 246 | 2.5e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066319.t1 | A0A072VJB0 | 99.4 | 164 | 1 | 0 | 1 | 164 | 96 | 259 | 3.1e-90 | 340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene066319 | 0.862024 | 6.79E-64 | -1.69E-46 |
| MS.gene049159 | MS.gene066319 | 0.825361 | 4.89E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene066319 | 0.86687 | 2.08E-65 | -1.69E-46 |
| MS.gene049283 | MS.gene066319 | 0.811976 | 5.35E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene066319 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene066319 | 0.820557 | 6.44E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene066319 | 0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene066319 | 0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene066319 | 0.812768 | 3.59E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene066319 | 0.820687 | 6.01E-53 | -1.69E-46 |
| MS.gene049647 | MS.gene066319 | 0.804984 | 1.66E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene066319 | 0.812939 | 3.29E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene066319 | 0.820742 | 5.84E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene066319 | 0.827186 | 1.80E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene066319 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene066319 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene066319 | 0.807808 | 4.22E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene066319 | 0.825014 | 5.90E-54 | -1.69E-46 |
| MS.gene050962 | MS.gene066319 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene066319 | 0.807977 | 3.88E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene066319 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene066319 | 0.827403 | 1.60E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene066319 | 0.821566 | 3.77E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene066319 | 0.815522 | 8.85E-52 | -1.69E-46 |
| MS.gene051490 | MS.gene066319 | 0.812133 | 4.94E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene066319 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene051597 | MS.gene066319 | 0.842735 | 2.16E-58 | -1.69E-46 |
| MS.gene051676 | MS.gene066319 | 0.811394 | 7.16E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene066319 | 0.869552 | 2.84E-66 | -1.69E-46 |
| MS.gene05188 | MS.gene066319 | 0.849272 | 3.60E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene066319 | 0.870636 | 1.26E-66 | -1.69E-46 |
| MS.gene052012 | MS.gene066319 | 0.855638 | 5.52E-62 | -1.69E-46 |
| MS.gene052108 | MS.gene066319 | 0.8277 | 1.35E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene066319 | 0.805516 | 1.29E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene066319 | 0.823473 | 1.36E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene066319 | 0.80258 | 5.25E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene066319 | 0.85306 | 3.07E-61 | -1.69E-46 |
| MS.gene052584 | MS.gene066319 | 0.84905 | 4.15E-60 | -1.69E-46 |
| MS.gene052773 | MS.gene066319 | 0.844724 | 6.33E-59 | -1.69E-46 |
| MS.gene052775 | MS.gene066319 | 0.80756 | 4.76E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene066319 | 0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene066319 | 0.843297 | 1.53E-58 | -1.69E-46 |
| MS.gene053006 | MS.gene066319 | 0.815155 | 1.07E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene066319 | 0.828284 | 9.79E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene066319 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene066319 | 0.823298 | 1.49E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene066319 | 0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene066319 | 0.87017 | 1.79E-66 | -1.69E-46 |
| MS.gene05364 | MS.gene066319 | 0.832268 | 1.04E-55 | -1.69E-46 |
| MS.gene053931 | MS.gene066319 | 0.829133 | 6.11E-55 | -1.69E-46 |
| MS.gene054139 | MS.gene066319 | 0.818222 | 2.19E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene066319 | 0.82583 | 3.79E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene066319 | 0.808713 | 2.70E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene066319 | 0.82373 | 1.18E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene066319 | 0.801296 | 9.63E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene066319 | 0.837482 | 5.06E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene066319 | 0.851025 | 1.16E-60 | -1.69E-46 |
| MS.gene054657 | MS.gene066319 | 0.845216 | 4.66E-59 | -1.69E-46 |
| MS.gene054658 | MS.gene066319 | 0.820521 | 6.57E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene066319 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene066319 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene066319 | 0.847269 | 1.29E-59 | -1.69E-46 |
| MS.gene055222 | MS.gene066319 | 0.816849 | 4.47E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene066319 | 0.820352 | 7.18E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene066319 | 0.844593 | 6.87E-59 | -1.69E-46 |
| MS.gene055586 | MS.gene066319 | 0.832913 | 7.21E-56 | -1.69E-46 |
| MS.gene055589 | MS.gene066319 | 0.830161 | 3.43E-55 | -1.69E-46 |
| MS.gene055603 | MS.gene066319 | 0.806558 | 7.76E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene066319 | 0.861436 | 1.03E-63 | -1.69E-46 |
| MS.gene055701 | MS.gene066319 | 0.803908 | 2.79E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene066319 | 0.807005 | 6.24E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene066319 | 0.839208 | 1.82E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene066319 | 0.852591 | 4.17E-61 | -1.69E-46 |
| MS.gene055926 | MS.gene066319 | 0.816717 | 4.79E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene066319 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene066319 | 0.829749 | 4.33E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene066319 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene056162 | MS.gene066319 | 0.818594 | 1.81E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene066319 | 0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene066319 | 0.808298 | 3.32E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene066319 | 0.824656 | 7.17E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene066319 | 0.833164 | 6.24E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene066319 | 0.816967 | 4.21E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene066319 | 0.829255 | 5.70E-55 | -1.69E-46 |
| MS.gene056509 | MS.gene066319 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene066319 | 0.826553 | 2.55E-54 | -1.69E-46 |
| MS.gene05659 | MS.gene066319 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene066319 | 0.860431 | 2.08E-63 | -1.69E-46 |
| MS.gene056776 | MS.gene066319 | 0.824101 | 9.69E-54 | -1.69E-46 |
| MS.gene056779 | MS.gene066319 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene066319 | 0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene056901 | MS.gene066319 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene066319 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene066319 | 0.851591 | 8.03E-61 | -1.69E-46 |
| MS.gene057026 | MS.gene066319 | 0.829404 | 5.25E-55 | -1.69E-46 |
| MS.gene057034 | MS.gene066319 | 0.863378 | 2.60E-64 | -1.69E-46 |
| MS.gene057208 | MS.gene066319 | 0.873649 | 1.25E-67 | -1.69E-46 |
| MS.gene057360 | MS.gene066319 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene066319 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene057611 | MS.gene066319 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene066319 | 0.833864 | 4.18E-56 | -1.69E-46 |
| MS.gene057855 | MS.gene066319 | 0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene066319 | 0.819884 | 9.19E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene066319 | 0.834397 | 3.07E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene066319 | 0.841544 | 4.46E-58 | -1.69E-46 |
| MS.gene058126 | MS.gene066319 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene066319 | 0.808339 | 3.25E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene066319 | 0.830429 | 2.95E-55 | -1.69E-46 |
| MS.gene05847 | MS.gene066319 | 0.823046 | 1.71E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene066319 | 0.831768 | 1.38E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene066319 | 0.813706 | 2.24E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene066319 | 0.808427 | 3.11E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene066319 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene058976 | MS.gene066319 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene066319 | 0.84388 | 1.07E-58 | -1.69E-46 |
| MS.gene05897 | MS.gene066319 | 0.815962 | 7.07E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene066319 | 0.823199 | 1.58E-53 | -1.69E-46 |
| MS.gene059439 | MS.gene066319 | 0.808025 | 3.79E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene066319 | 0.817823 | 2.70E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene066319 | 0.825766 | 3.92E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene066319 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene066319 | -0.822051 | 2.91E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene066319 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene066319 | 0.830351 | 3.08E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene066319 | 0.817522 | 3.16E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene066319 | 0.830965 | 2.18E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene066319 | 0.816489 | 5.39E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene066319 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene066319 | 0.819116 | 1.38E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene066319 | 0.843373 | 1.46E-58 | -1.69E-46 |
| MS.gene060637 | MS.gene066319 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene066319 | 0.81004 | 1.40E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene066319 | 0.822623 | 2.15E-53 | -1.69E-46 |
| MS.gene060907 | MS.gene066319 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene066319 | 0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene066319 | 0.84147 | 4.66E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene066319 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene066319 | 0.812992 | 3.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066319.t1 | MTR_2g064415 | 99.390 | 164 | 1 | 0 | 1 | 164 | 96 | 259 | 8.74e-121 | 341 |
| MS.gene066319.t1 | MTR_7g010920 | 38.542 | 96 | 58 | 1 | 51 | 146 | 83 | 177 | 9.00e-21 | 86.7 |
| MS.gene066319.t1 | MTR_4g116980 | 29.801 | 151 | 103 | 3 | 1 | 148 | 74 | 224 | 6.60e-19 | 80.5 |
| MS.gene066319.t1 | MTR_4g008540 | 29.139 | 151 | 104 | 3 | 1 | 148 | 74 | 224 | 1.24e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066319.t1 | AT3G12760 | 77.483 | 151 | 34 | 0 | 1 | 151 | 97 | 247 | 7.93e-88 | 257 |
| MS.gene066319.t1 | AT3G28970 | 40.594 | 101 | 59 | 1 | 46 | 146 | 80 | 179 | 3.15e-23 | 93.2 |
| MS.gene066319.t1 | AT1G15860 | 28.477 | 151 | 105 | 3 | 1 | 148 | 74 | 224 | 8.34e-20 | 82.8 |
| MS.gene066319.t1 | AT1G15860 | 28.477 | 151 | 105 | 3 | 1 | 148 | 74 | 224 | 8.34e-20 | 82.8 |
| MS.gene066319.t1 | AT1G15860 | 28.125 | 160 | 103 | 4 | 1 | 148 | 74 | 233 | 1.08e-17 | 77.4 |
| MS.gene066319.t1 | AT3G28970 | 35.354 | 99 | 56 | 2 | 48 | 146 | 82 | 172 | 2.64e-15 | 71.6 |
Find 27 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGAAGGCTTACAATCTT+TGG | 0.213937 | 2.3:-30467554 | MS.gene066319:CDS |
| GGATACATGGTCTCAGCTTT+TGG | 0.269497 | 2.3:-30466148 | MS.gene066319:CDS |
| CTGGCTTTGGATACAGCTAT+TGG | 0.290596 | 2.3:-30466372 | MS.gene066319:CDS |
| ATTGAAGGCTTACAATCTTT+GGG | 0.290934 | 2.3:-30467553 | MS.gene066319:CDS |
| GAGATATATAACTTTGCTTT+TGG | 0.322910 | 2.3:-30467239 | MS.gene066319:CDS |
| TTATTGCAGGATTGATTCTC+TGG | 0.338350 | 2.3:-30467458 | MS.gene066319:intron |
| GGCTTATTACCTGCAAGAAT+TGG | 0.342538 | 2.3:+30466295 | None:intergenic |
| TTCAGCTCAGAGCGCATATA+TGG | 0.364877 | 2.3:+30467415 | None:intergenic |
| GGCATAACAAAGCAATATCT+AGG | 0.382983 | 2.3:-30466170 | MS.gene066319:CDS |
| ACATTGGTGCCAATTCTTGC+AGG | 0.391466 | 2.3:-30466304 | MS.gene066319:intron |
| TGGCTTTGGATACAGCTATT+GGG | 0.410722 | 2.3:-30466371 | MS.gene066319:CDS |
| TGCTGAGAAGCAGTGGCCTC+TGG | 0.419876 | 2.3:-30466331 | MS.gene066319:CDS |
| GTCGATTATCTGAACGAGAA+TGG | 0.468378 | 2.3:-30465370 | MS.gene066319:CDS |
| CTTTCATGGCACATGAAGGC+TGG | 0.477640 | 2.3:-30467607 | MS.gene066319:CDS |
| ATTATGATGCTGAAGGTGCT+TGG | 0.540689 | 2.3:-30465414 | MS.gene066319:CDS |
| AGTTCTTTCATGGCACATGA+AGG | 0.546918 | 2.3:-30467611 | MS.gene066319:CDS |
| TGGATACAGCTATTGGGATG+TGG | 0.552347 | 2.3:-30466365 | MS.gene066319:CDS |
| TTGAAGGCTTACAATCTTTG+GGG | 0.561512 | 2.3:-30467552 | MS.gene066319:intron |
| ACAAACTCATCAATAAGATA+CGG | 0.563427 | 2.3:+30465391 | None:intergenic |
| AAGCAATATCTAGGGATACA+TGG | 0.569704 | 2.3:-30466161 | MS.gene066319:CDS |
| TATTATTTGCTGAGAAGCAG+TGG | 0.570737 | 2.3:-30466338 | MS.gene066319:CDS |
| GCATAACAAAGCAATATCTA+GGG | 0.579769 | 2.3:-30466169 | MS.gene066319:CDS |
| AATCGGTTATCTGACCATGT+TGG | 0.594215 | 2.3:+30465341 | None:intergenic |
| TTATCTGATTATGATGCTGA+AGG | 0.610431 | 2.3:-30465421 | MS.gene066319:CDS |
| AGTGGCCTCTGGTTGAACAT+TGG | 0.651904 | 2.3:-30466320 | MS.gene066319:CDS |
| TGGCACCAATGTTCAACCAG+AGG | 0.679329 | 2.3:+30466315 | None:intergenic |
| GAGAATGGTGTTAACCAACA+TGG | 0.694710 | 2.3:-30465355 | MS.gene066319:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAATCTGTTTATATTA+TGG | + | chr2.3:30466438-30466457 | None:intergenic | 15.0% |
| !!! | AACTAAAAAGGTATATAATT+AGG | + | chr2.3:30466666-30466685 | None:intergenic | 15.0% |
| !!! | ATGAACTAGTATATTTTATT+CGG | + | chr2.3:30465853-30465872 | None:intergenic | 15.0% |
| !!! | GAAATTATATTTTCTGTTTT+TGG | - | chr2.3:30465656-30465675 | MS.gene066319:intron | 15.0% |
| !! | AAATATCCAGAATCATAATA+AGG | - | chr2.3:30466968-30466987 | MS.gene066319:intron | 20.0% |
| !! | ATAATAAGGAAAAGTAAATG+TGG | - | chr2.3:30466982-30467001 | MS.gene066319:intron | 20.0% |
| !! | ATAATCAGATGATACTAAAA+AGG | + | chr2.3:30466346-30466365 | None:intergenic | 20.0% |
| !! | ATGATAATAACCAAGTAAAA+TGG | + | chr2.3:30465898-30465917 | None:intergenic | 20.0% |
| ! | AAGTGAATACAAATTCTTCT+CGG | + | chr2.3:30467363-30467382 | None:intergenic | 25.0% |
| ! | AATAACCAAGTAAAATGGAA+GGG | + | chr2.3:30465893-30465912 | None:intergenic | 25.0% |
| ! | ACAAACTCATCAATAAGATA+CGG | + | chr2.3:30467549-30467568 | None:intergenic | 25.0% |
| ! | ATATAGTGTTAACTTCATAG+AGG | + | chr2.3:30467460-30467479 | None:intergenic | 25.0% |
| ! | TAATAACCAAGTAAAATGGA+AGG | + | chr2.3:30465894-30465913 | None:intergenic | 25.0% |
| ! | TCAGATCTTCAATTTATCAT+TGG | + | chr2.3:30465638-30465657 | None:intergenic | 25.0% |
| ! | TTAAATTAGTATAAGCCAAC+AGG | + | chr2.3:30465816-30465835 | None:intergenic | 25.0% |
| ! | TTGCAAAGTGAAAACTAAAA+AGG | + | chr2.3:30466678-30466697 | None:intergenic | 25.0% |
| !! | AATTTTATAAGACCTTCAAC+CGG | + | chr2.3:30465461-30465480 | None:intergenic | 25.0% |
| !! | ACTTTTACTGTGTATAAAGA+TGG | - | chr2.3:30467379-30467398 | MS.gene066319:intron | 25.0% |
| !! | ACTTTTCCTTATTATGATTC+TGG | + | chr2.3:30466977-30466996 | None:intergenic | 25.0% |
| !! | AGGTCTTATAAAATTATTGC+AGG | - | chr2.3:30465466-30465485 | MS.gene066319:intron | 25.0% |
| !! | ATACAAGTTAACTTTTTGCA+GGG | - | chr2.3:30466532-30466551 | MS.gene066319:intron | 25.0% |
| !! | CAAGTTAGAAGATTTTCTAT+TGG | - | chr2.3:30466695-30466714 | MS.gene066319:intron | 25.0% |
| !! | GAGATATATAACTTTGCTTT+TGG | - | chr2.3:30465698-30465717 | MS.gene066319:intron | 25.0% |
| !! | TATACAAGTTAACTTTTTGC+AGG | - | chr2.3:30466531-30466550 | MS.gene066319:intron | 25.0% |
| !!! | ACCTTTAGAATAAGTTCAAT+AGG | - | chr2.3:30466842-30466861 | MS.gene066319:intron | 25.0% |
| AATAGTTTAGCTGATACAGA+AGG | - | chr2.3:30467217-30467236 | MS.gene066319:intron | 30.0% | |
| AGTCCTAAACCTAATTGAAT+AGG | + | chr2.3:30465932-30465951 | None:intergenic | 30.0% | |
| ATAACCAAGTAAAATGGAAG+GGG | + | chr2.3:30465892-30465911 | None:intergenic | 30.0% | |
| ATTGAAGGCTTACAATCTTT+GGG | - | chr2.3:30465384-30465403 | MS.gene066319:CDS | 30.0% | |
| CAAAGATCACTAATGTAATC+AGG | + | chr2.3:30467118-30467137 | None:intergenic | 30.0% | |
| CTCAACATGTGTTTATAAGT+GGG | - | chr2.3:30466009-30466028 | MS.gene066319:intron | 30.0% | |
| CTGAACATGTGTTTATAAGT+GGG | - | chr2.3:30466239-30466258 | MS.gene066319:intron | 30.0% | |
| GCATAACAAAGCAATATCTA+GGG | - | chr2.3:30466768-30466787 | MS.gene066319:intron | 30.0% | |
| GCCTATTGAACTTATTCTAA+AGG | + | chr2.3:30466846-30466865 | None:intergenic | 30.0% | |
| GTCCTAAACCTAATTGAATA+GGG | + | chr2.3:30465931-30465950 | None:intergenic | 30.0% | |
| TCAACATGTGTTTATAAGTG+GGG | - | chr2.3:30466010-30466029 | MS.gene066319:intron | 30.0% | |
| TCCTAAACCTAATTGAATAG+GGG | + | chr2.3:30465930-30465949 | None:intergenic | 30.0% | |
| TGAACATGTGTTTATAAGTG+GGG | - | chr2.3:30466240-30466259 | MS.gene066319:intron | 30.0% | |
| TTATCTGATTATGATGCTGA+AGG | - | chr2.3:30467516-30467535 | MS.gene066319:intron | 30.0% | |
| ! | AATTTCATTGCTACTTACTC+AGG | - | chr2.3:30466741-30466760 | MS.gene066319:intron | 30.0% |
| ! | ATTATCACATTTTACACCAG+TGG | - | chr2.3:30467277-30467296 | MS.gene066319:intron | 30.0% |
| ! | ATTTTATAAGACCTTCAACC+GGG | + | chr2.3:30465460-30465479 | None:intergenic | 30.0% |
| ! | GCATATATGGTATCTTTTCA+CGG | + | chr2.3:30465512-30465531 | None:intergenic | 30.0% |
| ! | TATATCTCGCGAAATTTTTC+TGG | + | chr2.3:30465686-30465705 | None:intergenic | 30.0% |
| ! | TATGTGTGAGTTTTCCAAAA+AGG | - | chr2.3:30465356-30465375 | MS.gene066319:CDS | 30.0% |
| !! | ATATAACTTTGCTTTTGGCT+GGG | - | chr2.3:30465703-30465722 | MS.gene066319:intron | 30.0% |
| !! | TATATAACTTTGCTTTTGGC+TGG | - | chr2.3:30465702-30465721 | MS.gene066319:intron | 30.0% |
| !! | TCATCGTTTTAGACTAGAAT+CGG | + | chr2.3:30467616-30467635 | None:intergenic | 30.0% |
| AAATCATGAGAGAAACGACA+TGG | + | chr2.3:30467022-30467041 | None:intergenic | 35.0% | |
| AAGCAATATCTAGGGATACA+TGG | - | chr2.3:30466776-30466795 | MS.gene066319:intron | 35.0% | |
| AATAGCTACTGTTTGCAAGA+TGG | + | chr2.3:30467055-30467074 | None:intergenic | 35.0% | |
| AATATGCCAGCCTAAGAAAA+AGG | + | chr2.3:30467419-30467438 | None:intergenic | 35.0% | |
| ACTTGTATATTACTGTTGCG+TGG | + | chr2.3:30466520-30466539 | None:intergenic | 35.0% | |
| ACTTTGTCCTAGTGTATTGT+TGG | + | chr2.3:30467185-30467204 | None:intergenic | 35.0% | |
| AGCCTTCTCTATAATCCATT+GGG | - | chr2.3:30466100-30466119 | MS.gene066319:intron | 35.0% | |
| AGGTTGCATCCATATTATGA+GGG | + | chr2.3:30466873-30466892 | None:intergenic | 35.0% | |
| CAACATGTGTTTATAAGTGG+GGG | - | chr2.3:30466011-30466030 | MS.gene066319:intron | 35.0% | |
| CAGCACAATATCCACATTAA+GGG | + | chr2.3:30466896-30466915 | None:intergenic | 35.0% | |
| CATATTGCCATACACTTTCT+TGG | - | chr2.3:30467142-30467161 | MS.gene066319:intron | 35.0% | |
| CATTGAAGGCTTACAATCTT+TGG | - | chr2.3:30465383-30465402 | MS.gene066319:CDS | 35.0% | |
| CCACTTATAAACACATGTTC+AGG | + | chr2.3:30466241-30466260 | None:intergenic | 35.0% | |
| CCACTTATAAACACATGTTG+AGG | + | chr2.3:30466011-30466030 | None:intergenic | 35.0% | |
| CCTAAACCTAATTGAATAGG+GGG | + | chr2.3:30465929-30465948 | None:intergenic | 35.0% | |
| CCTCAACATGTGTTTATAAG+TGG | - | chr2.3:30466008-30466027 | MS.gene066319:intron | 35.0% | |
| CCTGAACATGTGTTTATAAG+TGG | - | chr2.3:30466238-30466257 | MS.gene066319:intron | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | - | chr2.3:30466241-30466260 | MS.gene066319:intron | 35.0% | |
| GGCATAACAAAGCAATATCT+AGG | - | chr2.3:30466767-30466786 | MS.gene066319:intron | 35.0% | |
| GGTTCGTAAACATAAATGGT+GGG | + | chr2.3:30466162-30466181 | None:intergenic | 35.0% | |
| TAGTTAAGCCACACAAAGAA+GGG | + | chr2.3:30465770-30465789 | None:intergenic | 35.0% | |
| TATAAAGATGGCAATGCAAG+TGG | - | chr2.3:30467391-30467410 | MS.gene066319:intron | 35.0% | |
| TCCAAAAAGGAGTTCATTGA+AGG | - | chr2.3:30465369-30465388 | MS.gene066319:CDS | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr2.3:30466079-30466098 | None:intergenic | 35.0% | |
| TGGTTCGTAAACATAAATGG+TGG | + | chr2.3:30466163-30466182 | None:intergenic | 35.0% | |
| TTAGTTAAGCCACACAAAGA+AGG | + | chr2.3:30465771-30465790 | None:intergenic | 35.0% | |
| TTGAAGGCTTACAATCTTTG+GGG | - | chr2.3:30465385-30465404 | MS.gene066319:CDS | 35.0% | |
| TTGTTTCCCCCTATTCAATT+AGG | - | chr2.3:30465920-30465939 | MS.gene066319:intron | 35.0% | |
| ! | GCTTGGTTCGTAAACATAAA+TGG | + | chr2.3:30466166-30466185 | None:intergenic | 35.0% |
| ! | TATTATTTGCTGAGAAGCAG+TGG | - | chr2.3:30466599-30466618 | MS.gene066319:intron | 35.0% |
| ! | TGTGGCTTAACTAATTTGCA+TGG | - | chr2.3:30465777-30465796 | MS.gene066319:intron | 35.0% |
| ! | TTATTGCAGGATTGATTCTC+TGG | - | chr2.3:30465479-30465498 | MS.gene066319:intron | 35.0% |
| !! | TTGTTTCTGTAACACAATCC+CGG | - | chr2.3:30465439-30465458 | MS.gene066319:CDS | 35.0% |
| AAGATGAACGTATGAACCCT+AGG | - | chr2.3:30465544-30465563 | MS.gene066319:intron | 40.0% | |
| AATCGGTTATCTGACCATGT+TGG | + | chr2.3:30467599-30467618 | None:intergenic | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr2.3:30466075-30466094 | None:intergenic | 40.0% | |
| AGTGTTAAAGAGTCCCACAT+CGG | - | chr2.3:30465974-30465993 | MS.gene066319:intron | 40.0% | |
| AGTTAAGCCACACAAAGAAG+GGG | + | chr2.3:30465769-30465788 | None:intergenic | 40.0% | |
| AGTTCTTTCATGGCACATGA+AGG | - | chr2.3:30465326-30465345 | MS.gene066319:CDS | 40.0% | |
| CAAGGAACCAACAATACACT+AGG | - | chr2.3:30467175-30467194 | MS.gene066319:intron | 40.0% | |
| CACAATATCCACATTAAGGG+AGG | + | chr2.3:30466893-30466912 | None:intergenic | 40.0% | |
| CAGCCTTCTCTATAATCCAT+TGG | - | chr2.3:30466099-30466118 | MS.gene066319:intron | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | + | chr2.3:30466074-30466093 | None:intergenic | 40.0% | |
| CCCCCTATTCAATTAGGTTT+AGG | - | chr2.3:30465926-30465945 | MS.gene066319:intron | 40.0% | |
| CCGTCTTAGAATTCGTAGTT+GGG | + | chr2.3:30466309-30466328 | None:intergenic | 40.0% | |
| CTAACACAACCTCACAAAAC+CGG | + | chr2.3:30466050-30466069 | None:intergenic | 40.0% | |
| GAGGTTGCATCCATATTATG+AGG | + | chr2.3:30466874-30466893 | None:intergenic | 40.0% | |
| GCAGCACAATATCCACATTA+AGG | + | chr2.3:30466897-30466916 | None:intergenic | 40.0% | |
| GGCTTATTACCTGCAAGAAT+TGG | + | chr2.3:30466645-30466664 | None:intergenic | 40.0% | |
| GTCGATTATCTGAACGAGAA+TGG | - | chr2.3:30467567-30467586 | MS.gene066319:CDS | 40.0% | |
| TTTGCAGGGTCAAAAATCTC+TGG | - | chr2.3:30466546-30466565 | MS.gene066319:intron | 40.0% | |
| ! | ATTGCCCCTTCCATTTTACT+TGG | - | chr2.3:30465885-30465904 | MS.gene066319:intron | 40.0% |
| ! | CCCAACTACGAATTCTAAGA+CGG | - | chr2.3:30466306-30466325 | MS.gene066319:CDS | 40.0% |
| ! | GAGAATGGTGTTAACCAACA+TGG | - | chr2.3:30467582-30467601 | MS.gene066319:CDS | 40.0% |
| ! | GCAAGTGGTACCTTTTTCTT+AGG | - | chr2.3:30467406-30467425 | MS.gene066319:intron | 40.0% |
| ! | GCCTTCAATGAACTCCTTTT+TGG | + | chr2.3:30465373-30465392 | None:intergenic | 40.0% |
| ! | TCGTAAACATAAATGGTGGG+TGG | + | chr2.3:30466159-30466178 | None:intergenic | 40.0% |
| !! | ATTATGATGCTGAAGGTGCT+TGG | - | chr2.3:30467523-30467542 | MS.gene066319:intron | 40.0% |
| !! | CAACTACGAATTCTAAGACG+GGG | - | chr2.3:30466308-30466327 | MS.gene066319:CDS | 40.0% |
| !! | CCAACTACGAATTCTAAGAC+GGG | - | chr2.3:30466307-30466326 | MS.gene066319:CDS | 40.0% |
| !! | CTAGTGTATTGTTGGTTCCT+TGG | + | chr2.3:30467177-30467196 | None:intergenic | 40.0% |
| !! | TGGCTTTGGATACAGCTATT+GGG | - | chr2.3:30466566-30466585 | MS.gene066319:intron | 40.0% |
| !!! | TCAGCTTTTGGAGTTTGCAA+AGG | - | chr2.3:30466801-30466820 | MS.gene066319:intron | 40.0% |
| AACCCTAGGCATTCAGATCA+TGG | - | chr2.3:30465558-30465577 | MS.gene066319:intron | 45.0% | |
| AAGCCATGATCTGAATGCCT+AGG | + | chr2.3:30465564-30465583 | None:intergenic | 45.0% | |
| AGACTTACAGCTGACATGAC+TGG | + | chr2.3:30467315-30467334 | None:intergenic | 45.0% | |
| AGCCATGATCTGAATGCCTA+GGG | + | chr2.3:30465563-30465582 | None:intergenic | 45.0% | |
| AGGCCATCGTTTGTTTGATG+TGG | + | chr2.3:30466221-30466240 | None:intergenic | 45.0% | |
| CATGAGAGAAACGACATGGA+AGG | + | chr2.3:30467018-30467037 | None:intergenic | 45.0% | |
| CCATACACTTTCTTGGCATG+TGG | - | chr2.3:30467149-30467168 | MS.gene066319:intron | 45.0% | |
| CCCGTCTTAGAATTCGTAGT+TGG | + | chr2.3:30466310-30466329 | None:intergenic | 45.0% | |
| CTGCTATCAGGTTTCGCTAT+CGG | - | chr2.3:30466127-30466146 | MS.gene066319:intron | 45.0% | |
| CTGGCAATAAATACAGCCAC+TGG | + | chr2.3:30467296-30467315 | None:intergenic | 45.0% | |
| GGAAGTAAGTGATGACCTGT+TGG | - | chr2.3:30465798-30465817 | MS.gene066319:intron | 45.0% | |
| GGCCATCGTTTGTTTGATGT+GGG | + | chr2.3:30466220-30466239 | None:intergenic | 45.0% | |
| GTCCCACATCAAACAAACGA+TGG | - | chr2.3:30466215-30466234 | MS.gene066319:intron | 45.0% | |
| TACTGTTGCGTGGTATCAGA+TGG | + | chr2.3:30466510-30466529 | None:intergenic | 45.0% | |
| TAGGCGACACCCTCATAATA+TGG | - | chr2.3:30466861-30466880 | MS.gene066319:intron | 45.0% | |
| TGCTATCAGGTTTCGCTATC+GGG | - | chr2.3:30466128-30466147 | MS.gene066319:intron | 45.0% | |
| TGGATACAGCTATTGGGATG+TGG | - | chr2.3:30466572-30466591 | MS.gene066319:intron | 45.0% | |
| TGTAACACAATCCCGGTTGA+AGG | - | chr2.3:30465446-30465465 | MS.gene066319:intron | 45.0% | |
| TTCAGCTCAGAGCGCATATA+TGG | + | chr2.3:30465525-30465544 | None:intergenic | 45.0% | |
| TTTCTTGGCATGTGGAACCA+AGG | - | chr2.3:30467157-30467176 | MS.gene066319:intron | 45.0% | |
| ! | CATTGCTACTTACTCAGGCT+CGG | - | chr2.3:30466746-30466765 | MS.gene066319:intron | 45.0% |
| ! | CCACATGCCAAGAAAGTGTA+TGG | + | chr2.3:30467152-30467171 | None:intergenic | 45.0% |
| ! | CCCAACCACGATTTCTAAGA+TGG | - | chr2.3:30466071-30466090 | MS.gene066319:intron | 45.0% |
| ! | GGATACATGGTCTCAGCTTT+TGG | - | chr2.3:30466789-30466808 | MS.gene066319:intron | 45.0% |
| ! | GGGTCAAAAATCTCTGGCTT+TGG | - | chr2.3:30466552-30466571 | MS.gene066319:intron | 45.0% |
| ! | GTGGTACCTTTTTCTTAGGC+TGG | - | chr2.3:30467410-30467429 | MS.gene066319:CDS | 45.0% |
| !! | ACATTGGTGCCAATTCTTGC+AGG | - | chr2.3:30466633-30466652 | MS.gene066319:intron | 45.0% |
| !! | ACGAATTCTAAGACGGGGAT+TGG | - | chr2.3:30466313-30466332 | MS.gene066319:CDS | 45.0% |
| !! | CGGTTTTGTGAGGTTGTGTT+AGG | - | chr2.3:30466048-30466067 | MS.gene066319:intron | 45.0% |
| !! | CTGGCTTTGGATACAGCTAT+TGG | - | chr2.3:30466565-30466584 | MS.gene066319:intron | 45.0% |
| !! | GGCCCAATGGATTATAGAGA+AGG | + | chr2.3:30466105-30466124 | None:intergenic | 45.0% |
| !! | TTTTGGCTGGGCAAAAGAGA+AGG | - | chr2.3:30465715-30465734 | MS.gene066319:intron | 45.0% |
| AAGCCACACAAAGAAGGGGA+GGG | + | chr2.3:30465765-30465784 | None:intergenic | 50.0% | |
| AGTGGCCTCTGGTTGAACAT+TGG | - | chr2.3:30466617-30466636 | MS.gene066319:intron | 50.0% | |
| ATCAGGTTTCGCTATCGGGT+CGG | - | chr2.3:30466132-30466151 | MS.gene066319:intron | 50.0% | |
| CGATAGCGAAACCTGATAGC+AGG | + | chr2.3:30466129-30466148 | None:intergenic | 50.0% | |
| CTTTCATGGCACATGAAGGC+TGG | - | chr2.3:30465330-30465349 | MS.gene066319:CDS | 50.0% | |
| GAAATCCTCACCTCACAAGC+CGG | - | chr2.3:30466263-30466282 | MS.gene066319:intron | 50.0% | |
| GGATGCAACCTCCCTTAATG+TGG | - | chr2.3:30466882-30466901 | MS.gene066319:intron | 50.0% | |
| GTCCCACATCGGACAAAAGA+TGG | - | chr2.3:30465985-30466004 | MS.gene066319:intron | 50.0% | |
| TAACCCTCCCCTTCTTTGTG+TGG | - | chr2.3:30465759-30465778 | MS.gene066319:intron | 50.0% | |
| TAAGCCACACAAAGAAGGGG+AGG | + | chr2.3:30465766-30465785 | None:intergenic | 50.0% | |
| TAGCGAAACCTGATAGCAGG+TGG | + | chr2.3:30466126-30466145 | None:intergenic | 50.0% | |
| TGGCACCAATGTTCAACCAG+AGG | + | chr2.3:30466625-30466644 | None:intergenic | 50.0% | |
| ! | AGGCCATCTTTTGTCCGATG+TGG | + | chr2.3:30465991-30466010 | None:intergenic | 50.0% |
| ! | GGCCATCTTTTGTCCGATGT+GGG | + | chr2.3:30465990-30466009 | None:intergenic | 50.0% |
| ACGACCAGCACTATTGGGCT+TGG | + | chr2.3:30466183-30466202 | None:intergenic | 55.0% | |
| CGAACCAAGCCCAATAGTGC+TGG | - | chr2.3:30466176-30466195 | MS.gene066319:CDS | 55.0% | |
| TCAGGTTTCGCTATCGGGTC+GGG | - | chr2.3:30466133-30466152 | MS.gene066319:intron | 55.0% | |
| TGGGGGAAAACCTCACAAGC+CGG | - | chr2.3:30466028-30466047 | MS.gene066319:intron | 55.0% | |
| !! | AAGCCCAATAGTGCTGGTCG+TGG | - | chr2.3:30466182-30466201 | MS.gene066319:intron | 55.0% |
| !! | AGCCCAATAGTGCTGGTCGT+GGG | - | chr2.3:30466183-30466202 | MS.gene066319:intron | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr2.3:30466271-30466290 | None:intergenic | 55.0% |
| !! | CCTCACAAAACCGGCTTGTG+AGG | + | chr2.3:30466041-30466060 | None:intergenic | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+AGG | - | chr2.3:30466038-30466057 | MS.gene066319:intron | 55.0% |
| CCATTGGGCCACCTGCTATC+AGG | - | chr2.3:30466115-30466134 | MS.gene066319:intron | 60.0% | |
| CCCCCACGACCAGCACTATT+GGG | + | chr2.3:30466188-30466207 | None:intergenic | 60.0% | |
| CCTGATAGCAGGTGGCCCAA+TGG | + | chr2.3:30466118-30466137 | None:intergenic | 60.0% | |
| TGCTGAGAAGCAGTGGCCTC+TGG | - | chr2.3:30466606-30466625 | MS.gene066319:intron | 60.0% | |
| !! | CCAATAGTGCTGGTCGTGGG+GGG | - | chr2.3:30466186-30466205 | MS.gene066319:intron | 60.0% |
| !! | CCCAATAGTGCTGGTCGTGG+GGG | - | chr2.3:30466185-30466204 | MS.gene066319:intron | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+GGG | - | chr2.3:30466184-30466203 | MS.gene066319:intron | 60.0% |
| CCCCCCACGACCAGCACTAT+TGG | + | chr2.3:30466189-30466208 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 30465324 | 30467635 | 30465324 | ID=MS.gene066319 |
| chr2.3 | mRNA | 30465324 | 30467635 | 30465324 | ID=MS.gene066319.t1;Parent=MS.gene066319 |
| chr2.3 | exon | 30467553 | 30467635 | 30467553 | ID=MS.gene066319.t1.exon1;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30467553 | 30467635 | 30467553 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| chr2.3 | exon | 30467407 | 30467471 | 30467407 | ID=MS.gene066319.t1.exon2;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30467407 | 30467471 | 30467407 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| chr2.3 | exon | 30467223 | 30467272 | 30467223 | ID=MS.gene066319.t1.exon3;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30467223 | 30467272 | 30467223 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| chr2.3 | exon | 30466305 | 30466406 | 30466305 | ID=MS.gene066319.t1.exon4;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30466305 | 30466406 | 30466305 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| chr2.3 | exon | 30466137 | 30466196 | 30466137 | ID=MS.gene066319.t1.exon5;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30466137 | 30466196 | 30466137 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| chr2.3 | exon | 30465324 | 30465458 | 30465324 | ID=MS.gene066319.t1.exon6;Parent=MS.gene066319.t1 |
| chr2.3 | CDS | 30465324 | 30465458 | 30465324 | ID=cds.MS.gene066319.t1;Parent=MS.gene066319.t1 |
| Gene Sequence |
| Protein sequence |
