AlfalfaGEDB | MS.gene40079

M. sativa cultivar XinJiangDaYe / MS.gene40079

KEGG: -
GO: GO:0005575 GO:0016020 GO:0110165
PFAM: PF12430.11 PF12537.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40079.t1	RHN53259.1	98.8	333	4	0	1	333	136	468	5.40E-172	613.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40079.t1	A2XX57	84.7	333	51	0	1	333	136	468	1.3e-150	533.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40079.t1	G7K0Z9	98.8	333	4	0	1	333	136	468	3.9e-172	613.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene40079	0.880849	3.91E-70	-1.69E-46
MS.gene049159	MS.gene40079	0.841067	5.95E-58	-1.69E-46
MS.gene049254	MS.gene40079	0.867422	1.38E-65	-1.69E-46
MS.gene049272	MS.gene40079	0.809647	1.71E-50	-1.69E-46
MS.gene049343	MS.gene40079	0.816698	4.84E-52	-1.69E-46
MS.gene049350	MS.gene40079	0.812236	4.69E-51	-1.69E-46
MS.gene049368	MS.gene40079	0.83837	2.99E-57	-1.69E-46
MS.gene049404	MS.gene40079	0.810519	1.11E-50	-1.69E-46
MS.gene049435	MS.gene40079	0.803546	3.31E-49	-1.69E-46
MS.gene049499	MS.gene40079	0.8398	1.28E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40079.t1	MTR_5g005440	98.799	333	4	0	1	333	136	468	0.0	665

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40079.t1	AT1G64990	84.384	333	52	0	1	333	136	468	0.0	531
MS.gene40079.t1	AT1G64990	84.384	333	52	0	1	333	136	468	0.0	531
MS.gene40079.t1	AT4G27630	85.285	333	48	1	1	333	136	467	0.0	529
MS.gene40079.t1	AT4G27630	84.639	332	51	0	2	333	17	348	0.0	525
MS.gene40079.t1	AT4G27630	84.639	332	51	0	2	333	17	348	0.0	525
MS.gene40079.t1	AT4G27630	79.552	357	48	2	1	333	136	491	0.0	516
MS.gene40079.t1	AT4G27630	82.008	239	42	1	1	239	136	373	1.41e-138	398
MS.gene40079.t1	AT4G27630	82.051	234	42	0	6	239	21	254	1.55e-138	394
MS.gene40079.t1	AT4G27630	82.008	239	42	1	1	239	136	373	2.27e-138	398

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Find 63 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGTTCCCATTATCT+CGG	0.545480	5.4:-1045461	None:intergenic
AAAGCTTAGCAACCGAATAC+AGG	0.469068	5.4:+1045509	MS.gene40079:CDS
AAATGCAGCCTTATTATCTC+AGG	0.465152	5.4:+1043797	MS.gene40079:CDS
AACACACTTATACCTGTATT+CGG	0.368811	5.4:-1045521	None:intergenic
AAGAAACCTTTATCAGGTGA+TGG	0.558347	5.4:-1040524	None:intergenic
AAGAGTGATAAATAACTGTA+TGG	0.498599	5.4:-1040632	None:intergenic
AAGTTACACTCACAATCAAT+TGG	0.502259	5.4:-1046339	None:intergenic
AATACGTTTGATAAAAGATC+TGG	0.470086	5.4:-1041050	None:intergenic
AATGCGCAGATAGTAAAAGT+AGG	0.522155	5.4:-1046290	None:intergenic
ACCGGTGATAAAAGTCAAAT+TGG	0.292591	5.4:-1046230	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACACTTATACCTGTATT+CGG	-	chr5.4:1045524-1045543	None:intergenic	30.0%
AACTCTTTGACTCATTACAA+TGG	+	chr5.4:1041725-1041744	MS.gene40079:intron	30.0%
AAGGAACTGAACTTGATTAA+TGG	+	chr5.4:1041501-1041520	MS.gene40079:intron	30.0%
AAGTATATTACCGTGTTGAA+AGG	+	chr5.4:1043426-1043445	MS.gene40079:intron	30.0%
AATGAGTCAAAGAGTTGAAA+AGG	-	chr5.4:1041721-1041740	None:intergenic	30.0%
ACAGTTCCCTAACAAAAATT+AGG	+	chr5.4:1043268-1043287	MS.gene40079:intron	30.0%
ACTCTTTGACTCATTACAAT+GGG	+	chr5.4:1041726-1041745	MS.gene40079:intron	30.0%
AGGAACTGAACTTGATTAAT+GGG	+	chr5.4:1041502-1041521	MS.gene40079:intron	30.0%
AGTACATGTGATAAGTAACT+AGG	-	chr5.4:1044462-1044481	None:intergenic	30.0%
ATAGTTTGGATAAACATCCT+AGG	+	chr5.4:1046127-1046146	MS.gene40079:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	1040521	1046348	1040521	ID=MS.gene40079
chr5.4	mRNA	1040521	1046348	1040521	ID=MS.gene40079.t1;Parent=MS.gene40079
chr5.4	exon	1040521	1040790	1040521	ID=MS.gene40079.t1.exon1;Parent=MS.gene40079.t1
chr5.4	CDS	1040521	1040790	1040521	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1041040	1041118	1041040	ID=MS.gene40079.t1.exon2;Parent=MS.gene40079.t1
chr5.4	CDS	1041040	1041118	1041040	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1042496	1042584	1042496	ID=MS.gene40079.t1.exon3;Parent=MS.gene40079.t1
chr5.4	CDS	1042496	1042584	1042496	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1042810	1042902	1042810	ID=MS.gene40079.t1.exon4;Parent=MS.gene40079.t1
chr5.4	CDS	1042810	1042902	1042810	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1043588	1043614	1043588	ID=MS.gene40079.t1.exon5;Parent=MS.gene40079.t1
chr5.4	CDS	1043588	1043614	1043588	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1043732	1043818	1043732	ID=MS.gene40079.t1.exon6;Parent=MS.gene40079.t1
chr5.4	CDS	1043732	1043818	1043732	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1044724	1044795	1044724	ID=MS.gene40079.t1.exon7;Parent=MS.gene40079.t1
chr5.4	CDS	1044724	1044795	1044724	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1045400	1045530	1045400	ID=MS.gene40079.t1.exon8;Parent=MS.gene40079.t1
chr5.4	CDS	1045400	1045530	1045400	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1
chr5.4	exon	1046197	1046348	1046197	ID=MS.gene40079.t1.exon9;Parent=MS.gene40079.t1
chr5.4	CDS	1046197	1046348	1046197	ID=cds.MS.gene40079.t1;Parent=MS.gene40079.t1

Gene Sequence

>MS.gene40079

ATGCCATCACCTGATAAAGGTTTCTTTACTATGCCTCAATTGGTCAGTAGAATTGGTGTCATTGGTGTTACTGTCATGGCTGTTCTATCTGGTTTTGGTGCTGTTAACTTGCCATACAGTTATTTATCACTCTTCATCAGAGAGATTGAGGAAACTGAGATCAAGGCCTTGGAAAGACAACTTATGCAGTCAATTGAGACTGGTATTTCAAACAAAAAGAAAATTATTCTCGCTCAAATGGAGATGGAGAACAAGCAAGGATCTGAAGAGGTTGCCTTTTTTTATCTTTTGCCACTCGGCATGTTTTTGGACTCTAATAACAATTAATTACTTATTATTTTATTTGCATAACAATTATATTGACATTTCCTTTGGTTTCACAATTTTAATATATTAATTATTGAGTGTTAACATCTATTGATTTATGCATTGATTTTGTAAAGCCATTTTCTTTATAGGTTTTATTTGCCTTTTACTTTGTGTTCCTGTTCTAGCTTCATCTGAACTTGTTTTTCGCAGAGGTTAACTGCCAGATCTTTTATCAAACGTATTGTTGGTACAGTTGTTCGATCCGTGCAAGAGGACCAGAAGGAGCAAGGTTAGTTTCCTTTTATTCTTGAAAAAGCCATTTGAAGCGCCTGCTTTAGAGATATAAATTTTGGTGAATATAGTATTAAAGAATTACATGATCAATAAAGTAAACAAAAACTGTGTACTGAGGACATGTAGATTGAAAAAACATTTGTGTCTTTTTTTTTTAATTATTATACGATGATTTGCATTTATGTAGTGGTTTATGTGTTTAGTTGGAGAATAACGCTTGAGTTTTTCAAGGATAATCTTTCACCAACTATTATAACTTTGGGAAAGGTTTTTTGATAGTATTAACTAGAAATTGAGCAGGAAGGGAAGAAAGGGAAATTCTCGCAGAAACAAAAGGATTGCCTTATTGATGGGTGTAATGATAGTACAAATATTCAAAGGAACTGAACTTGATTAATGGGGAATTTAGTACAATGTTTAATGGATTGTTCAATAACAAGTAGTTGCAGAAAATTATAAAGGTACAGTAGCTATGAGATACATGAAAGAGAAAGAGAGAGATTAGAAGAGAAATGAGATCATCACATATTTCATGCCTTAATTCTTTGGCCTTCTCTTATTTATAAGAGTCCACATTCAAATTTCCTAGATTGCCCTTTTCAACTCTTTGACTCATTACAATGGGTCTCGGTCAATGGTTAAACATAGACTTAGAACACTAACTCTTCCAAGACTGAGTTATTTTCCAACTGTCTACTTATTCTGCCTATCTATAGTCACCTCCTAACCCGTTTACTAACTGACGAGCAAAAAACCAACTAACTAAAGGCATGTCTATCATTTCTGTAGCTTCTATATGAGGCTTGGTTAGTTTTCATGGGTTTCTTTGTTGTGATTGACCCTTCCCTAGACCCGCTACAGTATGAGCTCCAAAGCAACAAAAGGCTTTGAAGTTGGGGTGTGGGGAGCCTTTAGCAGTTACTTTCATGTGCCTAGGAGGTCACAAGTTTGAGTTATGGAATCGGCCTCTTGTAAATGCAAGACAAGGTTGCCTACAATAACTCATGGCCTACAGATATGTCCGACCCTTCTCTAGACTCCCACCATGACTGGATAGCACAAGTTTTCCTTTTTCTTTATTGGATATTCAGAGAGATTGGATTCCATTTCTCAATTTATATGTTTCCTTTTTATCAAAATGGGGCCGTCCCTTTCAATCATGCAAATAAGTATTACCATGTTTCAGTATGATTGGAATTTTTTGCTCAAATTGGGGGTTTACATGATACATGATTTGTTTTTACTACTGGTCATGAAGTGATTCATTTAATAATGGTACATCTGATTGTATATTCTTATTTTTCTTTAGTTATGTTATAAAATTATCAATTATCAAATACAAATTTTTTAATTTTTTTGGTTGAATGTGAAGATATCAAAGGCATGGAAGCAGAGGTACTGGCTTTAGAAGAGCTTTCAAAGCAATTGTTCTTGGAGATCTATGAGCTTCGACAAGCAAAGGTTTACTTTATCCGATATCATCACAAAAAACTGTGGCGTTGACCTTTAAAAAAACTGGAAAATAGTGTTACTGCTTTCTGAAGAATGCATGTTGTAATCAAAGATAAAATTGAGACTTATTTTGTATAAAAAAGCCAACTCCATCTTAATGTGATTGAACTTGGTTTCACTTCTCATATTTTCTACGTAAATCTGCTTACTATGAAAATGGTTTCAACTATGCAGGAAGCTGCTGCATATTCTCGAACTTGGAAAGGACATATGCAGAATCTACTAGGTTATGCTTGTTCCGTTTATTGTGTGTATAAAATGATCAAGGTATTGTGATATCAGACAGCAGCATAAATTGATATTTTATATGCTAGATTAAGGTTTCTTGGACAAACTAATGTTTGTAATGGTGGACTAGAGCTTTTCGTTAGGTATAAATGGCTCGGAAGCAAAGTATGGTAAATCCAACAATCTATTTGCCGACTGATGCTAAACTAAAAATTCACTTGTTTGATAGCAACATGTTTTCAATTTATTCTTCAAGATTTGAATATATTGCTAATTGTATTAGGATTCCAAGTTCCAACTCATAAATCTGAACCTGAATAAAGCTTATGATATGGGTTAATAAAATTTACCAAAATATCCATGTGGCTGAAAATATGAACAACATAAAGTAGCTGCAGCTTAGTACAGTTCCCTAACAAAAATTAGGACAAAGTACAGATTGCACCCAGAAGTTTGGTTCATTTTCATGTTTGATAAAATTGTTATTCTCTTTCTTTCATTTATAGATTTTCCTTAATTTGTGTGAAAAAAATCTAGTGTGACACTCATAATAGGACGGAGGAAGTATATTACCGTGTTGAAAGGTTCAGTTGAGGTTGACTATGTTGTGACACCTGTACGGTGATATTAGCAGCAATAGTATTTTAATGGAGTATTTCTCTAGTGATTTTTTTTTAAAATTTACTGTAGTCAATATGGCTAACTGATTAATCCTTTTTTGCAGTCATTGCAAAGTGTTGTTTTCAAACAGGTAAAAGATCATGTATTGTTATTAGTATTTTCCAAATATAATTACTTTTTTTCCATCTTTTAGTCTGAATCTCATATTGTCACTGTGCTTCTTTGCTGATAATGTGTTTCAATATAGGCTGGTTCAGTTGATCCCGTGACAAGGATGATAAGTATATTCCTACAGTTTTTTGATATTGGAATAAATGCAGCCTTATTATCTCAGGTTAGTGTCCAGTTGCATTGTAGAATAGATGATGGTCAATGTGTCCCTTAAACCTAATGCATTCTTATTTAAAGATCAAATTAGAATTCTCATATTTTGTAAAGAGTTGTAGACGTGTATATGAGCTGACGTTATTAAGTGGGTATTGTTCACTTCTAGTTACACTGCATGTGTCCTAAATTGATTAGGATAAATATATACACAGAGCTTAATTACTAAAAACAATTAAGTTTGTGCACTCCATTCACTATTTTATGTCTTTGAGAAGTCTCCTTAAATTTCTTTTTTGTTGCTTTGTATGAGGTTCAATTGTTTGCTTTGTACTTGTTTACTGAAGAATGTAAGGTTCATGTTTTTCCTTTGTTCACTTTTTGTTGATCCTCCCCACTAATCAGAGCCATTGTACTGAGATCTCTATTAAATGAAGTATAAACCCATTTGATATCTTGGAACTTATGTAATAGAGTTGTTTGAGAAGTAAAAACTCATGAATCAAGAATATTGTAGTGTATATGCCATTGAATGTAATTTCCTAAGAATTCTTTTTGTTTATATATTGTTTAGTCGTGTGAAACTTTCTTATTTGGATTATTAAATGAATGTATTCTGTTATGATCATATGTGGTGCTTTCTAGCTCTCCCTAGTTACTTATCACATGTACTTGATGTTGTGATTATTATCATTATTTTTTACCTTAGGCAGTCAACTTCATTATTTTTCACACAAATAAACTAGCTCTCCCTAGTTTATATGTGGTGCTTTCAGCAACTAACTAAGTGACCATAGTCTTCTGTTACTCTCCTAGTTCTTCTCTCATACACCTTTTCCTTTGTTGACTAGAATTTGTATGGTATTACATGATTTGATGTTGTATTTACTTATAATTTTTCTGCATTTTGTACAGTATATTTCCTTGCTATTCATCGGAATGTTGGTTGTGATATCAGTGCGTGGATTCTTAACAAATTTAATGAAGGTATTTCTGCTGCTTTCAGTTGCTACTTTTTTTTATACACCTATTTTTTTCTATTTGATATTTCTTGGATAGTTGCTAAGGCATTTTCGATCTTTTTTGTGGAGTAAACCAGCGTAACCATTTACGAAATACATATTGGAAGTTTTAAGGCTGAATTTGCATACAACCTGGGATGATATACAAAAGAATAAAATATGATATAGGAGAGTAGACAATTTACATTCCTGGCATGGATAAAGGAATAATCTAATGAATAATATACCTCTTCTGGTACTAGACAATCTACCCAAGTCCCAAACAATATTGATATGCTCTTAGAACTGTTTTTTTAATTATTTAAAAGAAAATTATTGAATATAAGGAAACAAATAAATAAATAATACATGCTTATAATGTCAAAATGTCCACTTTGACAGAATGGCAGAACCTCTATTGTGAGATGCTACCCTTATCACCACTGAAATAATGGCCATCGAACATCAACTTTCCAGCTTAAATAAAACAAAAGAAAACCGTCAAGTTGAAAAATAACAAGGCAGTAACAAATACAATTTAACTTGACTTATTATGAAGCCTAAGTTCAAATTTTTGTTTTGGATTACAGTTCTTTTTTGCTGTTTCAAGAGTTGGAAGTGGATCATCCAGCAACGTTGTTCTGTTTTTGTCCGAGATAATGGGAACATATTTTGTATCTTCTATTCTTTTAATCAGGAAAAGCTTAGCAACCGAATACAGGTATAAGTGTGTTTTGGTTTACTGTTTCCAATCTCTCGAAGTGCCATCCACTCAACAGAAACTATTTATTCCTTTCTTGTTTACTGGCTTTGGAATGTGCGCAATTAGTTCACAAACATGGCCTACTAGTAATCTGTGCATTAGTAATATTTTAATTGATATGCATGGTAGAAACATGTCCAGCAATCCTGCTAAATCAGAAATACTGAATTTAGGTGTGCTTGATATTTACCTGTGGCCGGAGACAATATATGAACAATAGGGTGAGAGAGGTACTATTAAGCTGTTGATTAGTCAAGATTTGTTTTGACAGAATGGATAAAAAGCTGTCAACGAGAGAAAAGTGAAACATAAGGTTGTTGCCATTTTCATGGAGAATATGAATGAAAGAGAGTGAAGATAAAAAGAAACAAAAAGAATGAACAACACCAATAACGTTTAAGTAAACCTTTCAATCCTATTTATATCTATACATTCAGCTGACTACTTTTCATTGTTTAGAATTCAACTCAAGGTAGTAGCAAACCGAAGCAAGAGTCTGGTTGTTTGTTGCACTTGTGTTGATTGATTCAAATTTGGCACGTGTAGGAATAGTTATAGTTTGGATAAACATCCTAGGATGATCAGCATTTATCTTGATAATATCTGATCTGAATTCATTGACAGGATTATCATTACAGAGGTATTGGGCGGTGATATCCAATTTGACTTTTATCACCGGTGGTTTGATGCAATATTTGTGGCTAGTGCATTCCTTTCCCTACTTTTACTATCTGCGCATTATACATCTCGCCAAATTGATAAACATCCAATTGATT

Protein sequence

>MS.gene40079.t1

MPSPDKGFFTMPQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIEETEIKALERQLMQSIETGISNKKKIILAQMEMENKQGSEERLTARSFIKRIVGTVVRSVQEDQKEQDIKGMEAEVLALEELSKQLFLEIYELRQAKEAAAYSRTWKGHMQNLLGYACSVYCVYKMIKSLQSVVFKQAGSVDPVTRMISIFLQFFDIGINAALLSQYISLLFIGMLVVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGTYFVSSILLIRKSLATEYRIIITEVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQIDKHPID