Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36440.t1 | XP_013457293.1 | 94.8 | 543 | 28 | 0 | 1 | 543 | 1 | 543 | 6.20E-303 | 1049.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36440.t1 | Q9SA85 | 54.8 | 533 | 222 | 7 | 8 | 534 | 7 | 526 | 6.6e-168 | 592.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36440.t1 | A0A072UNE4 | 94.8 | 543 | 28 | 0 | 1 | 543 | 1 | 543 | 4.5e-303 | 1049.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36440 | 0.804056 | 2.59E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene36440 | 0.855729 | 5.19E-62 | -1.69E-46 |
| MS.gene049264 | MS.gene36440 | 0.815972 | 7.03E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene36440 | 0.805924 | 1.06E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene36440 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene36440 | 0.802558 | 5.30E-49 | -1.69E-46 |
| MS.gene050073 | MS.gene36440 | 0.804416 | 2.18E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene36440 | 0.80814 | 3.59E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene36440 | 0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene36440 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene36440 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene36440 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene36440 | 0.807752 | 4.33E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene36440 | 0.849488 | 3.13E-60 | -1.69E-46 |
| MS.gene051368 | MS.gene36440 | 0.801687 | 8.01E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene36440 | 0.835311 | 1.81E-56 | -1.69E-46 |
| MS.gene051543 | MS.gene36440 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene36440 | 0.838633 | 2.56E-57 | -1.69E-46 |
| MS.gene051800 | MS.gene36440 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene36440 | 0.807519 | 4.86E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene36440 | 0.810123 | 1.35E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene36440 | 0.808163 | 3.55E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene36440 | 0.831529 | 1.58E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene36440 | 0.824891 | 6.31E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene36440 | 0.833348 | 5.62E-56 | -1.69E-46 |
| MS.gene052674 | MS.gene36440 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene36440 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene36440 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene052681 | MS.gene36440 | 0.808237 | 3.42E-50 | -1.69E-46 |
| MS.gene052855 | MS.gene36440 | 0.814125 | 1.81E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene36440 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene36440 | 0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene36440 | 0.807765 | 4.31E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene36440 | -0.803509 | 3.37E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene36440 | 0.800766 | 1.24E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene36440 | 0.818382 | 2.02E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene36440 | 0.844612 | 6.79E-59 | -1.69E-46 |
| MS.gene054576 | MS.gene36440 | 0.870723 | 1.18E-66 | -1.69E-46 |
| MS.gene054641 | MS.gene36440 | 0.808831 | 2.55E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene36440 | 0.825564 | 4.38E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene36440 | 0.835289 | 1.83E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene36440 | 0.834097 | 3.65E-56 | -1.69E-46 |
| MS.gene055228 | MS.gene36440 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene36440 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene36440 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene36440 | 0.806099 | 9.70E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene36440 | 0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene055864 | MS.gene36440 | 0.822315 | 2.53E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene36440 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene36440 | 0.821043 | 4.98E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene36440 | 0.82616 | 3.16E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene36440 | 0.812384 | 4.36E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene36440 | 0.8006 | 1.34E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene36440 | 0.822274 | 2.59E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene36440 | 0.80031 | 1.53E-48 | -1.69E-46 |
| MS.gene056779 | MS.gene36440 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene36440 | 0.800956 | 1.13E-48 | -1.69E-46 |
| MS.gene056973 | MS.gene36440 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene36440 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene057034 | MS.gene36440 | 0.825024 | 5.87E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene36440 | 0.824974 | 6.04E-54 | -1.69E-46 |
| MS.gene057360 | MS.gene36440 | 0.810938 | 8.99E-51 | -1.69E-46 |
| MS.gene057611 | MS.gene36440 | 0.81112 | 8.21E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene36440 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene36440 | 0.818889 | 1.55E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene36440 | 0.828263 | 9.91E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene36440 | 0.823905 | 1.08E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene36440 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene059438 | MS.gene36440 | 0.824618 | 7.32E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene36440 | 0.839119 | 1.92E-57 | -1.69E-46 |
| MS.gene059774 | MS.gene36440 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene36440 | 0.810888 | 9.21E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene36440 | 0.836317 | 1.00E-56 | -1.69E-46 |
| MS.gene060167 | MS.gene36440 | 0.811479 | 6.86E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene36440 | 0.801327 | 9.49E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene36440 | 0.832885 | 7.32E-56 | -1.69E-46 |
| MS.gene060520 | MS.gene36440 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene36440 | 0.801589 | 8.39E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene36440 | 0.870377 | 1.53E-66 | -1.69E-46 |
| MS.gene060777 | MS.gene36440 | 0.815865 | 7.43E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene36440 | 0.81828 | 2.13E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene36440 | 0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene36440 | 0.818253 | 2.16E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene36440 | 0.8319 | 1.28E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene36440 | 0.813071 | 3.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36440.t1 | MTR_4g094498 | 94.843 | 543 | 28 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1012 |
| MS.gene36440.t1 | MTR_2g031560 | 59.443 | 503 | 201 | 2 | 36 | 535 | 22 | 524 | 0.0 | 642 |
| MS.gene36440.t1 | MTR_2g031590 | 59.802 | 505 | 196 | 2 | 37 | 534 | 28 | 532 | 0.0 | 627 |
| MS.gene36440.t1 | MTR_4g094515 | 57.570 | 502 | 206 | 3 | 38 | 533 | 39 | 539 | 0.0 | 593 |
| MS.gene36440.t1 | MTR_4g094515 | 54.972 | 533 | 237 | 1 | 9 | 538 | 622 | 1154 | 0.0 | 593 |
| MS.gene36440.t1 | MTR_2g031490 | 56.530 | 536 | 220 | 6 | 7 | 534 | 8 | 538 | 0.0 | 593 |
| MS.gene36440.t1 | MTR_2g031510 | 57.822 | 505 | 202 | 5 | 38 | 534 | 39 | 540 | 0.0 | 584 |
| MS.gene36440.t1 | MTR_2g031390 | 52.295 | 501 | 233 | 3 | 39 | 534 | 30 | 529 | 0.0 | 558 |
| MS.gene36440.t1 | MTR_4g094495 | 53.626 | 524 | 234 | 3 | 23 | 537 | 20 | 543 | 0.0 | 553 |
| MS.gene36440.t1 | MTR_4g094480 | 53.631 | 537 | 240 | 5 | 8 | 537 | 4 | 538 | 0.0 | 549 |
| MS.gene36440.t1 | MTR_4g094478 | 53.271 | 535 | 239 | 5 | 8 | 534 | 4 | 535 | 0.0 | 545 |
| MS.gene36440.t1 | MTR_4g094488 | 53.725 | 510 | 227 | 3 | 37 | 537 | 31 | 540 | 0.0 | 544 |
| MS.gene36440.t1 | MTR_4g094492 | 52.416 | 538 | 246 | 6 | 8 | 537 | 4 | 539 | 0.0 | 544 |
| MS.gene36440.t1 | MTR_4g088355 | 55.754 | 504 | 218 | 4 | 39 | 537 | 33 | 536 | 0.0 | 543 |
| MS.gene36440.t1 | MTR_4g094518 | 53.373 | 504 | 229 | 3 | 36 | 534 | 28 | 530 | 0.0 | 543 |
| MS.gene36440.t1 | MTR_4g091150 | 55.357 | 504 | 215 | 5 | 39 | 534 | 39 | 540 | 0.0 | 541 |
| MS.gene36440.t1 | MTR_3g009820 | 50.568 | 528 | 248 | 5 | 12 | 536 | 7 | 524 | 0.0 | 537 |
| MS.gene36440.t1 | MTR_3g009880 | 50.662 | 529 | 249 | 5 | 11 | 536 | 3 | 522 | 0.0 | 536 |
| MS.gene36440.t1 | MTR_4g091200 | 53.965 | 517 | 221 | 5 | 21 | 533 | 22 | 525 | 0.0 | 535 |
| MS.gene36440.t1 | MTR_2g031420 | 53.785 | 502 | 225 | 4 | 37 | 535 | 31 | 528 | 0.0 | 532 |
| MS.gene36440.t1 | MTR_3g009760 | 50.000 | 530 | 248 | 6 | 12 | 536 | 7 | 524 | 0.0 | 531 |
| MS.gene36440.t1 | MTR_4g094520 | 50.000 | 532 | 252 | 5 | 7 | 534 | 11 | 532 | 0.0 | 528 |
| MS.gene36440.t1 | MTR_6g017205 | 52.713 | 516 | 227 | 5 | 22 | 533 | 23 | 525 | 0.0 | 523 |
| MS.gene36440.t1 | MTR_4g091190 | 50.473 | 529 | 259 | 3 | 14 | 540 | 7 | 534 | 0.0 | 522 |
| MS.gene36440.t1 | MTR_2g031460 | 52.165 | 508 | 236 | 4 | 37 | 541 | 31 | 534 | 0.0 | 520 |
| MS.gene36440.t1 | MTR_4g057990 | 50.476 | 525 | 248 | 6 | 11 | 533 | 7 | 521 | 6.06e-175 | 504 |
| MS.gene36440.t1 | MTR_4g094418 | 57.339 | 436 | 176 | 4 | 110 | 535 | 1 | 436 | 1.63e-173 | 504 |
| MS.gene36440.t1 | MTR_2g023590 | 52.790 | 466 | 218 | 2 | 73 | 536 | 3 | 468 | 7.19e-166 | 479 |
| MS.gene36440.t1 | MTR_4g091170 | 49.453 | 457 | 211 | 3 | 80 | 533 | 102 | 541 | 6.31e-157 | 460 |
| MS.gene36440.t1 | MTR_1g076830 | 42.222 | 495 | 273 | 5 | 50 | 531 | 38 | 532 | 3.45e-128 | 385 |
| MS.gene36440.t1 | MTR_2g031600 | 67.130 | 216 | 71 | 0 | 37 | 252 | 29 | 244 | 6.19e-96 | 298 |
| MS.gene36440.t1 | MTR_2g031600 | 59.236 | 157 | 64 | 0 | 378 | 534 | 244 | 400 | 1.21e-63 | 214 |
| MS.gene36440.t1 | MTR_3g009850 | 51.082 | 231 | 112 | 1 | 308 | 537 | 1 | 231 | 6.16e-76 | 240 |
| MS.gene36440.t1 | MTR_2g084370 | 43.243 | 111 | 41 | 2 | 134 | 244 | 1 | 89 | 2.61e-27 | 105 |
| MS.gene36440.t1 | MTR_2g084405 | 46.154 | 91 | 49 | 0 | 134 | 224 | 1 | 91 | 3.90e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36440.t1 | AT4G20840 | 55.268 | 503 | 221 | 3 | 38 | 537 | 37 | 538 | 0.0 | 563 |
| MS.gene36440.t1 | AT1G30700 | 54.784 | 533 | 222 | 7 | 8 | 534 | 7 | 526 | 0.0 | 561 |
| MS.gene36440.t1 | AT1G34575 | 54.095 | 525 | 224 | 7 | 12 | 532 | 11 | 522 | 0.0 | 558 |
| MS.gene36440.t1 | AT1G01980 | 54.510 | 510 | 223 | 5 | 38 | 539 | 31 | 539 | 0.0 | 556 |
| MS.gene36440.t1 | AT1G11770 | 53.507 | 499 | 228 | 3 | 39 | 534 | 32 | 529 | 0.0 | 550 |
| MS.gene36440.t1 | AT4G20830 | 55.952 | 504 | 218 | 3 | 37 | 537 | 37 | 539 | 0.0 | 548 |
| MS.gene36440.t1 | AT4G20830 | 55.952 | 504 | 218 | 3 | 37 | 537 | 37 | 539 | 0.0 | 547 |
| MS.gene36440.t1 | AT1G30710 | 54.871 | 503 | 214 | 6 | 41 | 536 | 34 | 530 | 0.0 | 546 |
| MS.gene36440.t1 | AT5G44400 | 48.598 | 535 | 259 | 7 | 7 | 534 | 11 | 536 | 4.26e-180 | 518 |
| MS.gene36440.t1 | AT2G34790 | 49.245 | 530 | 250 | 7 | 11 | 533 | 12 | 529 | 4.44e-179 | 515 |
| MS.gene36440.t1 | AT1G30760 | 50.598 | 502 | 236 | 5 | 39 | 533 | 35 | 531 | 1.37e-178 | 514 |
| MS.gene36440.t1 | AT1G30760 | 50.598 | 502 | 236 | 5 | 39 | 533 | 53 | 549 | 1.49e-178 | 514 |
| MS.gene36440.t1 | AT1G26390 | 50.301 | 499 | 241 | 4 | 39 | 532 | 29 | 525 | 9.44e-178 | 511 |
| MS.gene36440.t1 | AT1G26380 | 51.190 | 504 | 239 | 5 | 39 | 538 | 29 | 529 | 5.98e-177 | 510 |
| MS.gene36440.t1 | AT1G26420 | 50.095 | 525 | 248 | 8 | 13 | 532 | 8 | 523 | 7.96e-177 | 509 |
| MS.gene36440.t1 | AT1G30720 | 50.489 | 511 | 247 | 4 | 26 | 532 | 16 | 524 | 8.57e-177 | 509 |
| MS.gene36440.t1 | AT1G30730 | 49.053 | 528 | 255 | 6 | 11 | 532 | 4 | 523 | 3.76e-176 | 507 |
| MS.gene36440.t1 | AT1G30740 | 49.905 | 529 | 259 | 4 | 11 | 534 | 1 | 528 | 3.96e-176 | 508 |
| MS.gene36440.t1 | AT1G30740 | 49.905 | 529 | 259 | 4 | 11 | 534 | 4 | 531 | 6.14e-176 | 507 |
| MS.gene36440.t1 | AT1G26400 | 51.116 | 493 | 235 | 5 | 42 | 531 | 32 | 521 | 9.30e-176 | 506 |
| MS.gene36440.t1 | AT1G26410 | 50.000 | 500 | 239 | 6 | 39 | 532 | 53 | 547 | 2.31e-174 | 504 |
| MS.gene36440.t1 | AT4G20800 | 50.100 | 501 | 245 | 3 | 39 | 536 | 29 | 527 | 9.03e-173 | 499 |
| MS.gene36440.t1 | AT5G44390 | 49.409 | 508 | 247 | 7 | 36 | 534 | 34 | 540 | 7.07e-172 | 497 |
| MS.gene36440.t1 | AT4G20820 | 48.302 | 530 | 258 | 7 | 6 | 532 | 8 | 524 | 2.83e-170 | 493 |
| MS.gene36440.t1 | AT5G44380 | 48.964 | 531 | 255 | 7 | 11 | 534 | 18 | 539 | 1.68e-168 | 488 |
| MS.gene36440.t1 | AT5G44380 | 48.964 | 531 | 255 | 7 | 11 | 534 | 58 | 579 | 3.24e-168 | 489 |
| MS.gene36440.t1 | AT2G34810 | 49.016 | 508 | 246 | 6 | 39 | 535 | 35 | 540 | 1.00e-163 | 476 |
| MS.gene36440.t1 | AT4G20860 | 49.458 | 461 | 228 | 3 | 75 | 534 | 73 | 529 | 3.34e-162 | 472 |
| MS.gene36440.t1 | AT5G44440 | 47.358 | 530 | 262 | 8 | 12 | 532 | 6 | 527 | 1.45e-160 | 468 |
| MS.gene36440.t1 | AT5G44360 | 47.232 | 542 | 266 | 11 | 1 | 534 | 17 | 546 | 1.93e-160 | 468 |
| MS.gene36440.t1 | AT5G44360 | 47.232 | 542 | 266 | 11 | 1 | 534 | 1 | 530 | 1.95e-160 | 468 |
| MS.gene36440.t1 | AT5G44440 | 47.358 | 530 | 262 | 8 | 12 | 532 | 76 | 597 | 2.63e-159 | 467 |
| MS.gene36440.t1 | AT5G44410 | 47.103 | 535 | 259 | 10 | 8 | 532 | 7 | 527 | 5.16e-150 | 441 |
Find 110 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGATGTAGGAGTTTA+AGG | 0.141806 | 4.1:+18843538 | None:intergenic |
| TCCATCAACATCAACCATTT+TGG | 0.191474 | 4.1:+18843106 | None:intergenic |
| GGTAACATGATGAGAAAATT+TGG | 0.203065 | 4.1:-18843155 | MS.gene36440:CDS |
| AAATTCAGTACTCAGTAAAT+TGG | 0.225006 | 4.1:-18842437 | MS.gene36440:CDS |
| GTTATCTGTTGATAATATTT+TGG | 0.226666 | 4.1:-18843132 | MS.gene36440:CDS |
| TGATGTTGCGAATCAATATT+TGG | 0.237497 | 4.1:-18842400 | MS.gene36440:CDS |
| CAGAAGCCGATATCGAAAAT+TGG | 0.245756 | 4.1:-18842591 | MS.gene36440:CDS |
| AAGTTCAATGCTTTGTTTCT+TGG | 0.250620 | 4.1:-18842810 | MS.gene36440:CDS |
| GTTATGAAGAAGCTAGTATT+TGG | 0.256401 | 4.1:-18842263 | MS.gene36440:CDS |
| CACTTCTGATTCTGATTTCA+AGG | 0.264026 | 4.1:+18843414 | None:intergenic |
| ACATTGGAGAAGGGTATTAT+TGG | 0.289591 | 4.1:+18843637 | None:intergenic |
| TCACTCACATTCAATCCTTA+TGG | 0.296274 | 4.1:-18842525 | MS.gene36440:CDS |
| CAATTGGTGAAGTTTATTAT+AGG | 0.302894 | 4.1:-18843265 | MS.gene36440:CDS |
| GTGAGAATGAAAACGGGTTT+TGG | 0.306146 | 4.1:+18843491 | None:intergenic |
| TTATGAAGAAGCTAGTATTT+GGG | 0.337096 | 4.1:-18842262 | MS.gene36440:CDS |
| AAATTGGGTTGGATGGTATA+TGG | 0.351960 | 4.1:-18842575 | MS.gene36440:CDS |
| TTCTTCCCCTTTCTCTTAGC+AGG | 0.352965 | 4.1:+18842846 | None:intergenic |
| TAGTGGATGAGTTGAATCTA+AGG | 0.353487 | 4.1:+18843516 | None:intergenic |
| GGATTGATTCAGTGTTGTTT+TGG | 0.358314 | 4.1:-18842704 | MS.gene36440:CDS |
| GGTGGTGGTGGAGCTAGTTT+TGG | 0.359729 | 4.1:-18843032 | MS.gene36440:CDS |
| TAGTTCACATACGAACTTCT+TGG | 0.361444 | 4.1:+18842327 | None:intergenic |
| GGTGAATATGAAGGTGTGTT+TGG | 0.363695 | 4.1:+18843563 | None:intergenic |
| ACTTCTGAGATTGGATTAGA+AGG | 0.364151 | 4.1:+18843596 | None:intergenic |
| GAATCTTTATGGGTTGAATC+AGG | 0.364453 | 4.1:-18843293 | MS.gene36440:CDS |
| ATCAATATTTGGATCGGATT+CGG | 0.364710 | 4.1:-18842389 | MS.gene36440:CDS |
| GCTGAGATTAGTGGTGTTCA+TGG | 0.371798 | 4.1:-18843239 | MS.gene36440:CDS |
| GTAACATGATGAGAAAATTT+GGG | 0.371973 | 4.1:-18843154 | MS.gene36440:CDS |
| TCACCAATCAAACCCAATTC+AGG | 0.380665 | 4.1:+18842747 | None:intergenic |
| AAAGGGGAAGAAAACGATTA+AGG | 0.382705 | 4.1:-18842835 | MS.gene36440:CDS |
| CTTGGTGAATTTGACACATA+AGG | 0.383022 | 4.1:+18842345 | None:intergenic |
| ATTTCAAAGGAAACTTTGAT+AGG | 0.386790 | 4.1:-18842230 | MS.gene36440:CDS |
| TTTCCTGAATTGGGTTTGAT+TGG | 0.401805 | 4.1:-18842750 | MS.gene36440:CDS |
| TATAGGATTGCTGAGATTAG+TGG | 0.420448 | 4.1:-18843248 | MS.gene36440:CDS |
| AGATGGGGTGAGAATGAAAA+CGG | 0.420577 | 4.1:+18843484 | None:intergenic |
| TGAAGGTGTGTTTGGGAAGT+AGG | 0.431103 | 4.1:+18843571 | None:intergenic |
| GTTTGTCCTACTGTTGGTGT+TGG | 0.433697 | 4.1:-18843203 | MS.gene36440:CDS |
| GCCAAAATGGTTGATGTTGA+TGG | 0.435960 | 4.1:-18843107 | MS.gene36440:CDS |
| AAGTAGGTAACTTCTGAGAT+TGG | 0.442446 | 4.1:+18843587 | None:intergenic |
| TGGGCTATTAGAGGTGGTGG+TGG | 0.463521 | 4.1:-18843044 | MS.gene36440:CDS |
| GAATCTAAGGTTTCTGATGT+AGG | 0.467537 | 4.1:+18843529 | None:intergenic |
| TGTCCTACTGTTGGTGTTGG+TGG | 0.469479 | 4.1:-18843200 | MS.gene36440:CDS |
| TGTTTCTTGGAAGATTAAGT+TGG | 0.470889 | 4.1:-18843003 | MS.gene36440:CDS |
| TTGATGGAAGAGTGCTTGAT+AGG | 0.472401 | 4.1:-18843091 | MS.gene36440:CDS |
| TGGTATTAATATCATTATGT+TGG | 0.473730 | 4.1:+18843657 | None:intergenic |
| GTGAATATGAAGGTGTGTTT+GGG | 0.475111 | 4.1:+18843564 | None:intergenic |
| GTTAGTCCTGCTAAGAGAAA+GGG | 0.476006 | 4.1:-18842852 | MS.gene36440:CDS |
| GATGTTGATATAGGTGTCAA+TGG | 0.476097 | 4.1:-18842300 | MS.gene36440:CDS |
| AGAAGCCGATATCGAAAATT+GGG | 0.479345 | 4.1:-18842590 | MS.gene36440:CDS |
| CTGATGTAGGAGTTTAAGGT+GGG | 0.479655 | 4.1:+18843542 | None:intergenic |
| ACCATCAAGATGCATACAAT+TGG | 0.485204 | 4.1:-18843749 | None:intergenic |
| AGAGAGAAAGACATTGGAGA+AGG | 0.488844 | 4.1:+18843627 | None:intergenic |
| TCTGATGTAGGAGTTTAAGG+TGG | 0.489776 | 4.1:+18843541 | None:intergenic |
| TGTTAGTCCTGCTAAGAGAA+AGG | 0.490473 | 4.1:-18842853 | MS.gene36440:CDS |
| GTGCTTGATAGGAAATCAAT+GGG | 0.491711 | 4.1:-18843080 | MS.gene36440:CDS |
| GAACATGTCAAGAACAATGA+AGG | 0.496807 | 4.1:+18843349 | None:intergenic |
| AGCAATGTATTGAAATGAGT+TGG | 0.506091 | 4.1:-18842725 | MS.gene36440:CDS |
| ATGTGGAATACTATGAAGAA+TGG | 0.513188 | 4.1:+18843713 | None:intergenic |
| ACAGTAGGACAAACCCCAGC+TGG | 0.514116 | 4.1:+18843212 | None:intergenic |
| GCTGGGGTTTGTCCTACTGT+TGG | 0.516701 | 4.1:-18843209 | MS.gene36440:CDS |
| AGTGCTTGATAGGAAATCAA+TGG | 0.517131 | 4.1:-18843081 | MS.gene36440:CDS |
| TGCATCTGAGATTAGTGTAA+TGG | 0.517443 | 4.1:-18842139 | MS.gene36440:CDS |
| GAGAGAAAGACATTGGAGAA+GGG | 0.518172 | 4.1:+18843628 | None:intergenic |
| CATGTTCTTGCTTAGATCAG+TGG | 0.519701 | 4.1:-18843333 | MS.gene36440:CDS |
| AACATGTTACCAGCTCTATG+TGG | 0.525316 | 4.1:+18842462 | None:intergenic |
| TGCAGCATATGATTGATGCT+TGG | 0.525800 | 4.1:+18843447 | None:intergenic |
| GATGGGGTGAGAATGAAAAC+GGG | 0.526268 | 4.1:+18843485 | None:intergenic |
| TTTAAGGTGGGTGAATATGA+AGG | 0.526473 | 4.1:+18843554 | None:intergenic |
| TTGCGAATCAATATTTGGAT+CGG | 0.526644 | 4.1:-18842395 | MS.gene36440:CDS |
| CTCACATTCAATCCTTATGG+TGG | 0.534887 | 4.1:-18842522 | MS.gene36440:CDS |
| TGGAAGAAGATGATTGAACT+AGG | 0.545464 | 4.1:-18842555 | MS.gene36440:CDS |
| GATATAGGTGTCAATGGAGA+GGG | 0.546721 | 4.1:-18842294 | MS.gene36440:CDS |
| GTACTCAGTAAATTGGAAAG+AGG | 0.547618 | 4.1:-18842430 | MS.gene36440:CDS |
| AACTATAGAGATGTTGATAT+AGG | 0.549791 | 4.1:-18842309 | MS.gene36440:CDS |
| GTTGAATCAGGTGCTACAAT+TGG | 0.554775 | 4.1:-18843281 | MS.gene36440:CDS |
| GCCGATATCGAAAATTGGGT+TGG | 0.554890 | 4.1:-18842586 | MS.gene36440:CDS |
| ATATCGAAAATTGGGTTGGA+TGG | 0.562553 | 4.1:-18842582 | MS.gene36440:CDS |
| CAAAAGAGAAGTTCTTGAAG+AGG | 0.567801 | 4.1:-18842629 | MS.gene36440:CDS |
| CTGAATAGAGAGAAAGACAT+TGG | 0.568278 | 4.1:+18843621 | None:intergenic |
| GGGGTGATGTTGTTCATCAG+TGG | 0.573799 | 4.1:-18842923 | MS.gene36440:CDS |
| GGATGTGAGAGATATGAGAT+GGG | 0.576189 | 4.1:+18843468 | None:intergenic |
| AATGAGTGAGATTTCTGAGG+TGG | 0.577760 | 4.1:-18842496 | MS.gene36440:CDS |
| CTAATCTCAGATGCAAGTGA+TGG | 0.584295 | 4.1:+18842147 | None:intergenic |
| TTACCAGCTCTATGTGGGAA+TGG | 0.586583 | 4.1:+18842468 | None:intergenic |
| AAACTTTGATAGGCTTGTAG+AGG | 0.593703 | 4.1:-18842220 | MS.gene36440:CDS |
| GTTGCTGATAAGATACATGA+TGG | 0.594648 | 4.1:-18842894 | MS.gene36440:CDS |
| ATATCAGTCGAAGTTCCTAC+CGG | 0.604560 | 4.1:+18842672 | None:intergenic |
| ACACCATTCCCACATAGAGC+TGG | 0.611903 | 4.1:-18842471 | MS.gene36440:CDS |
| ATATAGGTGTCAATGGAGAG+GGG | 0.613762 | 4.1:-18842293 | MS.gene36440:CDS |
| AAGACACTGGTACTAGAATG+TGG | 0.614563 | 4.1:+18843696 | None:intergenic |
| AACATGTCAAGAACAATGAA+GGG | 0.614696 | 4.1:+18843350 | None:intergenic |
| TCACATTCAATCCTTATGGT+GGG | 0.617770 | 4.1:-18842521 | MS.gene36440:CDS |
| TATGAAGAAGCTAGTATTTG+GGG | 0.618664 | 4.1:-18842261 | MS.gene36440:CDS |
| GAAATCAGAATCAGAAGTGG+TGG | 0.623397 | 4.1:-18843410 | MS.gene36440:CDS |
| ACATGTTACCAGCTCTATGT+GGG | 0.626075 | 4.1:+18842463 | None:intergenic |
| CTTGAAATCAGAATCAGAAG+TGG | 0.627667 | 4.1:-18843413 | MS.gene36440:CDS |
| TACTATGAAGAATGGAACAA+GGG | 0.629238 | 4.1:+18843721 | None:intergenic |
| TTAGTCCTGCTAAGAGAAAG+GGG | 0.631092 | 4.1:-18842851 | MS.gene36440:CDS |
| AAAACATTGGAACAAGGTGG+GGG | 0.631184 | 4.1:-18842942 | MS.gene36440:CDS |
| TATAGGTGTCAATGGAGAGG+GGG | 0.633068 | 4.1:-18842292 | MS.gene36440:CDS |
| ATACTATGAAGAATGGAACA+AGG | 0.635254 | 4.1:+18843720 | None:intergenic |
| TGGATGTGAGAGATATGAGA+TGG | 0.636135 | 4.1:+18843467 | None:intergenic |
| TGATATAGGTGTCAATGGAG+AGG | 0.640685 | 4.1:-18842295 | MS.gene36440:CDS |
| TGTCCACCAACACCAACAGT+AGG | 0.646587 | 4.1:+18843197 | None:intergenic |
| AGTGGTGGTCATGACTATGA+TGG | 0.659640 | 4.1:-18843395 | MS.gene36440:CDS |
| ACAGAATCTGAAGAAGACAC+TGG | 0.698244 | 4.1:+18843683 | None:intergenic |
| TGCTTGATAGGAAATCAATG+GGG | 0.702162 | 4.1:-18843079 | MS.gene36440:CDS |
| GAAAATGAGTGAGATTTCTG+AGG | 0.702809 | 4.1:-18842499 | MS.gene36440:CDS |
| GCTTGATAGGAAATCAATGG+GGG | 0.703790 | 4.1:-18843078 | MS.gene36440:CDS |
| TTGCTGATAAGATACATGAT+GGG | 0.706046 | 4.1:-18842893 | MS.gene36440:CDS |
| GATGTGAGAGATATGAGATG+GGG | 0.755774 | 4.1:+18843469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAAAAATGAATCTTTA+TGG | - | chr4.1:18842567-18842586 | MS.gene36440:CDS | 15.0% |
| !! | CTTAAAAAATGAATCTTTAT+GGG | - | chr4.1:18842568-18842587 | MS.gene36440:CDS | 15.0% |
| !! | TCATATTTGAAAAAATTGCT+TGG | + | chr4.1:18843694-18843713 | None:intergenic | 20.0% |
| !! | TGGTATTAATATCATTATGT+TGG | + | chr4.1:18842217-18842236 | None:intergenic | 20.0% |
| !!! | GTTATCTGTTGATAATATTT+TGG | - | chr4.1:18842739-18842758 | MS.gene36440:CDS | 20.0% |
| !!! | TTTTAGAGTTGAAAAAACAT+TGG | - | chr4.1:18842916-18842935 | MS.gene36440:CDS | 20.0% |
| ! | AAATTCAGTACTCAGTAAAT+TGG | - | chr4.1:18843434-18843453 | MS.gene36440:CDS | 25.0% |
| ! | AACTATAGAGATGTTGATAT+AGG | - | chr4.1:18843562-18843581 | MS.gene36440:CDS | 25.0% |
| ! | ATTTCAAAGGAAACTTTGAT+AGG | - | chr4.1:18843641-18843660 | MS.gene36440:CDS | 25.0% |
| ! | CAATTGGTGAAGTTTATTAT+AGG | - | chr4.1:18842606-18842625 | MS.gene36440:CDS | 25.0% |
| ! | GTAACATGATGAGAAAATTT+GGG | - | chr4.1:18842717-18842736 | MS.gene36440:CDS | 25.0% |
| ! | TTATGAAGAAGCTAGTATTT+GGG | - | chr4.1:18843609-18843628 | MS.gene36440:CDS | 25.0% |
| !!! | TAATATTTTGGATGCCAAAA+TGG | - | chr4.1:18842751-18842770 | MS.gene36440:CDS | 25.0% |
| AAAAAACATTGGAACAAGGT+GGG | - | chr4.1:18842927-18842946 | MS.gene36440:CDS | 30.0% | |
| AACATGTCAAGAACAATGAA+GGG | + | chr4.1:18842524-18842543 | None:intergenic | 30.0% | |
| AGCAATGTATTGAAATGAGT+TGG | - | chr4.1:18843146-18843165 | MS.gene36440:CDS | 30.0% | |
| ATACTATGAAGAATGGAACA+AGG | + | chr4.1:18842154-18842173 | None:intergenic | 30.0% | |
| ATCAATATTTGGATCGGATT+CGG | - | chr4.1:18843482-18843501 | MS.gene36440:CDS | 30.0% | |
| ATGTGGAATACTATGAAGAA+TGG | + | chr4.1:18842161-18842180 | None:intergenic | 30.0% | |
| CTAAAAACAGTTACAATCTC+AGG | + | chr4.1:18842902-18842921 | None:intergenic | 30.0% | |
| GGTAACATGATGAGAAAATT+TGG | - | chr4.1:18842716-18842735 | MS.gene36440:CDS | 30.0% | |
| GTTATGAAGAAGCTAGTATT+TGG | - | chr4.1:18843608-18843627 | MS.gene36440:CDS | 30.0% | |
| GTTGAAAAAACATTGGAACA+AGG | - | chr4.1:18842923-18842942 | MS.gene36440:CDS | 30.0% | |
| TACTATGAAGAATGGAACAA+GGG | + | chr4.1:18842153-18842172 | None:intergenic | 30.0% | |
| TATGAAGAAGCTAGTATTTG+GGG | - | chr4.1:18843610-18843629 | MS.gene36440:CDS | 30.0% | |
| TGATGTTGCGAATCAATATT+TGG | - | chr4.1:18843471-18843490 | MS.gene36440:CDS | 30.0% | |
| TGTTTCTTGGAAGATTAAGT+TGG | - | chr4.1:18842868-18842887 | MS.gene36440:CDS | 30.0% | |
| TTGCGAATCAATATTTGGAT+CGG | - | chr4.1:18843476-18843495 | MS.gene36440:CDS | 30.0% | |
| TTGCTGATAAGATACATGAT+GGG | - | chr4.1:18842978-18842997 | MS.gene36440:CDS | 30.0% | |
| ! | AATGAGAGTTTTCCTGAATT+GGG | - | chr4.1:18843112-18843131 | MS.gene36440:CDS | 30.0% |
| !! | AAGTTCAATGCTTTGTTTCT+TGG | - | chr4.1:18843061-18843080 | MS.gene36440:CDS | 30.0% |
| !! | TGGGGTAAAAAGTATTTCAA+AGG | - | chr4.1:18843628-18843647 | MS.gene36440:CDS | 30.0% |
| !!! | GTTGTTTTGGTATAACTATC+CGG | - | chr4.1:18843180-18843199 | MS.gene36440:CDS | 30.0% |
| !!! | GTTTTGGTGTTATTGTTTCT+TGG | - | chr4.1:18842855-18842874 | MS.gene36440:CDS | 30.0% |
| AAAAACATTGGAACAAGGTG+GGG | - | chr4.1:18842928-18842947 | MS.gene36440:CDS | 35.0% | |
| AAACTTTGATAGGCTTGTAG+AGG | - | chr4.1:18843651-18843670 | MS.gene36440:CDS | 35.0% | |
| AAAGGGGAAGAAAACGATTA+AGG | - | chr4.1:18843036-18843055 | MS.gene36440:CDS | 35.0% | |
| AGAAGCCGATATCGAAAATT+GGG | - | chr4.1:18843281-18843300 | MS.gene36440:CDS | 35.0% | |
| AGTGCTTGATAGGAAATCAA+TGG | - | chr4.1:18842790-18842809 | MS.gene36440:CDS | 35.0% | |
| CAAAAGAGAAGTTCTTGAAG+AGG | - | chr4.1:18843242-18843261 | MS.gene36440:CDS | 35.0% | |
| CACTTCTGATTCTGATTTCA+AGG | + | chr4.1:18842460-18842479 | None:intergenic | 35.0% | |
| CTGAATAGAGAGAAAGACAT+TGG | + | chr4.1:18842253-18842272 | None:intergenic | 35.0% | |
| CTTGAAATCAGAATCAGAAG+TGG | - | chr4.1:18842458-18842477 | MS.gene36440:CDS | 35.0% | |
| CTTGGTGAATTTGACACATA+AGG | + | chr4.1:18843529-18843548 | None:intergenic | 35.0% | |
| GAAAAAACATTGGAACAAGG+TGG | - | chr4.1:18842926-18842945 | MS.gene36440:CDS | 35.0% | |
| GAAAATGAGTGAGATTTCTG+AGG | - | chr4.1:18843372-18843391 | MS.gene36440:CDS | 35.0% | |
| GAACATGTCAAGAACAATGA+AGG | + | chr4.1:18842525-18842544 | None:intergenic | 35.0% | |
| GATGTTGATATAGGTGTCAA+TGG | - | chr4.1:18843571-18843590 | MS.gene36440:CDS | 35.0% | |
| GTACTCAGTAAATTGGAAAG+AGG | - | chr4.1:18843441-18843460 | MS.gene36440:CDS | 35.0% | |
| GTGCTTGATAGGAAATCAAT+GGG | - | chr4.1:18842791-18842810 | MS.gene36440:CDS | 35.0% | |
| GTTGCTGATAAGATACATGA+TGG | - | chr4.1:18842977-18842996 | MS.gene36440:CDS | 35.0% | |
| GTTTCTGATGTAGGAGTTTA+AGG | + | chr4.1:18842336-18842355 | None:intergenic | 35.0% | |
| TAGTTCACATACGAACTTCT+TGG | + | chr4.1:18843547-18843566 | None:intergenic | 35.0% | |
| TATAGGATTGCTGAGATTAG+TGG | - | chr4.1:18842623-18842642 | MS.gene36440:CDS | 35.0% | |
| TCACATTCAATCCTTATGGT+GGG | - | chr4.1:18843350-18843369 | MS.gene36440:CDS | 35.0% | |
| TCACTCACATTCAATCCTTA+TGG | - | chr4.1:18843346-18843365 | MS.gene36440:CDS | 35.0% | |
| TGCTTGATAGGAAATCAATG+GGG | - | chr4.1:18842792-18842811 | MS.gene36440:CDS | 35.0% | |
| TGGAAGAAGATGATTGAACT+AGG | - | chr4.1:18843316-18843335 | MS.gene36440:CDS | 35.0% | |
| TTTCCTGAATTGGGTTTGAT+TGG | - | chr4.1:18843121-18843140 | MS.gene36440:CDS | 35.0% | |
| ! | CGACTGATATTTTGCTTGAA+AGG | - | chr4.1:18843212-18843231 | MS.gene36440:CDS | 35.0% |
| ! | GAATCTAAGGTTTCTGATGT+AGG | + | chr4.1:18842345-18842364 | None:intergenic | 35.0% |
| ! | GAATCTTTATGGGTTGAATC+AGG | - | chr4.1:18842578-18842597 | MS.gene36440:CDS | 35.0% |
| ! | GAATGAGAGTTTTCCTGAAT+TGG | - | chr4.1:18843111-18843130 | MS.gene36440:CDS | 35.0% |
| ! | GTGAATATGAAGGTGTGTTT+GGG | + | chr4.1:18842310-18842329 | None:intergenic | 35.0% |
| ! | TAGTGGATGAGTTGAATCTA+AGG | + | chr4.1:18842358-18842377 | None:intergenic | 35.0% |
| ! | TCCAACCCAATTTTCGATAT+CGG | + | chr4.1:18843289-18843308 | None:intergenic | 35.0% |
| ! | TCCATCAACATCAACCATTT+TGG | + | chr4.1:18842768-18842787 | None:intergenic | 35.0% |
| ! | TGCATCTGAGATTAGTGTAA+TGG | - | chr4.1:18843732-18843751 | MS.gene36440:CDS | 35.0% |
| ! | TTTAAGGTGGGTGAATATGA+AGG | + | chr4.1:18842320-18842339 | None:intergenic | 35.0% |
| ! | TTTTGGTATAACTATCCGGT+AGG | - | chr4.1:18843184-18843203 | MS.gene36440:CDS | 35.0% |
| !! | AAATTGGGTTGGATGGTATA+TGG | - | chr4.1:18843296-18843315 | MS.gene36440:CDS | 35.0% |
| !! | AAGTAGGTAACTTCTGAGAT+TGG | + | chr4.1:18842287-18842306 | None:intergenic | 35.0% |
| !! | ACATTGGAGAAGGGTATTAT+TGG | + | chr4.1:18842237-18842256 | None:intergenic | 35.0% |
| !! | ACTTCTGAGATTGGATTAGA+AGG | + | chr4.1:18842278-18842297 | None:intergenic | 35.0% |
| !! | ATATCGAAAATTGGGTTGGA+TGG | - | chr4.1:18843289-18843308 | MS.gene36440:CDS | 35.0% |
| !!! | AATGGGGGAAGATGTTTTTT+GGG | - | chr4.1:18842808-18842827 | MS.gene36440:CDS | 35.0% |
| !!! | GATGTTTTTTGGGCTATTAG+AGG | - | chr4.1:18842818-18842837 | MS.gene36440:CDS | 35.0% |
| !!! | GGATTGATTCAGTGTTGTTT+TGG | - | chr4.1:18843167-18843186 | MS.gene36440:CDS | 35.0% |
| AAAACATTGGAACAAGGTGG+GGG | - | chr4.1:18842929-18842948 | MS.gene36440:CDS | 40.0% | |
| AACATGTTACCAGCTCTATG+TGG | + | chr4.1:18843412-18843431 | None:intergenic | 40.0% | |
| AAGACACTGGTACTAGAATG+TGG | + | chr4.1:18842178-18842197 | None:intergenic | 40.0% | |
| ACAGAATCTGAAGAAGACAC+TGG | + | chr4.1:18842191-18842210 | None:intergenic | 40.0% | |
| ACATGTTACCAGCTCTATGT+GGG | + | chr4.1:18843411-18843430 | None:intergenic | 40.0% | |
| AGAGAGAAAGACATTGGAGA+AGG | + | chr4.1:18842247-18842266 | None:intergenic | 40.0% | |
| AGATGGGGTGAGAATGAAAA+CGG | + | chr4.1:18842390-18842409 | None:intergenic | 40.0% | |
| ATATAGGTGTCAATGGAGAG+GGG | - | chr4.1:18843578-18843597 | MS.gene36440:CDS | 40.0% | |
| ATATCAGTCGAAGTTCCTAC+CGG | + | chr4.1:18843202-18843221 | None:intergenic | 40.0% | |
| CAGAAGCCGATATCGAAAAT+TGG | - | chr4.1:18843280-18843299 | MS.gene36440:CDS | 40.0% | |
| CATGTTCTTGCTTAGATCAG+TGG | - | chr4.1:18842538-18842557 | MS.gene36440:CDS | 40.0% | |
| CTAATCTCAGATGCAAGTGA+TGG | + | chr4.1:18843727-18843746 | None:intergenic | 40.0% | |
| CTCACATTCAATCCTTATGG+TGG | - | chr4.1:18843349-18843368 | MS.gene36440:CDS | 40.0% | |
| GAAATCAGAATCAGAAGTGG+TGG | - | chr4.1:18842461-18842480 | MS.gene36440:CDS | 40.0% | |
| GAGAGAAAGACATTGGAGAA+GGG | + | chr4.1:18842246-18842265 | None:intergenic | 40.0% | |
| GATATAGGTGTCAATGGAGA+GGG | - | chr4.1:18843577-18843596 | MS.gene36440:CDS | 40.0% | |
| GATGTGAGAGATATGAGATG+GGG | + | chr4.1:18842405-18842424 | None:intergenic | 40.0% | |
| GCTTGATAGGAAATCAATGG+GGG | - | chr4.1:18842793-18842812 | MS.gene36440:CDS | 40.0% | |
| GGATGTGAGAGATATGAGAT+GGG | + | chr4.1:18842406-18842425 | None:intergenic | 40.0% | |
| GTTAGTCCTGCTAAGAGAAA+GGG | - | chr4.1:18843019-18843038 | MS.gene36440:CDS | 40.0% | |
| TCACCAATCAAACCCAATTC+AGG | + | chr4.1:18843127-18843146 | None:intergenic | 40.0% | |
| TCTGATGTAGGAGTTTAAGG+TGG | + | chr4.1:18842333-18842352 | None:intergenic | 40.0% | |
| TGATATAGGTGTCAATGGAG+AGG | - | chr4.1:18843576-18843595 | MS.gene36440:CDS | 40.0% | |
| TGCAGCATATGATTGATGCT+TGG | + | chr4.1:18842427-18842446 | None:intergenic | 40.0% | |
| TGGATGTGAGAGATATGAGA+TGG | + | chr4.1:18842407-18842426 | None:intergenic | 40.0% | |
| TGTTAGTCCTGCTAAGAGAA+AGG | - | chr4.1:18843018-18843037 | MS.gene36440:CDS | 40.0% | |
| TTAGTCCTGCTAAGAGAAAG+GGG | - | chr4.1:18843020-18843039 | MS.gene36440:CDS | 40.0% | |
| ! | AATGAGTGAGATTTCTGAGG+TGG | - | chr4.1:18843375-18843394 | MS.gene36440:CDS | 40.0% |
| ! | CTGATGTAGGAGTTTAAGGT+GGG | + | chr4.1:18842332-18842351 | None:intergenic | 40.0% |
| ! | GCCAAAATGGTTGATGTTGA+TGG | - | chr4.1:18842764-18842783 | MS.gene36440:CDS | 40.0% |
| ! | GGTGAATATGAAGGTGTGTT+TGG | + | chr4.1:18842311-18842330 | None:intergenic | 40.0% |
| ! | GTTGAATCAGGTGCTACAAT+TGG | - | chr4.1:18842590-18842609 | MS.gene36440:CDS | 40.0% |
| ! | TCACTCATTTTCCCACCATA+AGG | + | chr4.1:18843364-18843383 | None:intergenic | 40.0% |
| !! | GTGAGAATGAAAACGGGTTT+TGG | + | chr4.1:18842383-18842402 | None:intergenic | 40.0% |
| !! | TTGATGGAAGAGTGCTTGAT+AGG | - | chr4.1:18842780-18842799 | MS.gene36440:CDS | 40.0% |
| !! | TTGGTGGACATTTTAGTGGT+GGG | - | chr4.1:18842687-18842706 | MS.gene36440:CDS | 40.0% |
| !!! | CAATGGGGGAAGATGTTTTT+TGG | - | chr4.1:18842807-18842826 | MS.gene36440:CDS | 40.0% |
| !!! | GTTTTTTGGGCTATTAGAGG+TGG | - | chr4.1:18842821-18842840 | MS.gene36440:CDS | 40.0% |
| AGTGGTGGTCATGACTATGA+TGG | - | chr4.1:18842476-18842495 | MS.gene36440:CDS | 45.0% | |
| GATGGGGTGAGAATGAAAAC+GGG | + | chr4.1:18842389-18842408 | None:intergenic | 45.0% | |
| GCCGATATCGAAAATTGGGT+TGG | - | chr4.1:18843285-18843304 | MS.gene36440:CDS | 45.0% | |
| GCTGAGATTAGTGGTGTTCA+TGG | - | chr4.1:18842632-18842651 | MS.gene36440:CDS | 45.0% | |
| GTTTGTCCTACTGTTGGTGT+TGG | - | chr4.1:18842668-18842687 | MS.gene36440:CDS | 45.0% | |
| TATAGGTGTCAATGGAGAGG+GGG | - | chr4.1:18843579-18843598 | MS.gene36440:CDS | 45.0% | |
| TTACCAGCTCTATGTGGGAA+TGG | + | chr4.1:18843406-18843425 | None:intergenic | 45.0% | |
| TTCTTCCCCTTTCTCTTAGC+AGG | + | chr4.1:18843028-18843047 | None:intergenic | 45.0% | |
| ! | GTGTTCATGGTTTTCCAGCT+GGG | - | chr4.1:18842645-18842664 | MS.gene36440:CDS | 45.0% |
| ! | TGAAGGTGTGTTTGGGAAGT+AGG | + | chr4.1:18842303-18842322 | None:intergenic | 45.0% |
| ! | TGTTCATGGTTTTCCAGCTG+GGG | - | chr4.1:18842646-18842665 | MS.gene36440:CDS | 45.0% |
| ! | TTTTGGGCTATTAGAGGTGG+TGG | - | chr4.1:18842824-18842843 | MS.gene36440:CDS | 45.0% |
| !! | GTTGGTGGACATTTTAGTGG+TGG | - | chr4.1:18842686-18842705 | MS.gene36440:CDS | 45.0% |
| !! | TGGTGGACATTTTAGTGGTG+GGG | - | chr4.1:18842688-18842707 | MS.gene36440:CDS | 45.0% |
| !!! | GAAAACGGGTTTTGGAGTAG+TGG | + | chr4.1:18842375-18842394 | None:intergenic | 45.0% |
| !!! | GGTGTTGGTGGACATTTTAG+TGG | - | chr4.1:18842683-18842702 | MS.gene36440:CDS | 45.0% |
| ACACCATTCCCACATAGAGC+TGG | - | chr4.1:18843400-18843419 | MS.gene36440:CDS | 50.0% | |
| GGGGTGATGTTGTTCATCAG+TGG | - | chr4.1:18842948-18842967 | MS.gene36440:CDS | 50.0% | |
| TGTCCACCAACACCAACAGT+AGG | + | chr4.1:18842677-18842696 | None:intergenic | 50.0% | |
| ! | GGTGTTCATGGTTTTCCAGC+TGG | - | chr4.1:18842644-18842663 | MS.gene36440:CDS | 50.0% |
| !! | CATTTTAGTGGTGGGGGGTA+TGG | - | chr4.1:18842695-18842714 | MS.gene36440:CDS | 50.0% |
| !! | GGTGGACATTTTAGTGGTGG+GGG | - | chr4.1:18842689-18842708 | MS.gene36440:CDS | 50.0% |
| !! | GTGGACATTTTAGTGGTGGG+GGG | - | chr4.1:18842690-18842709 | MS.gene36440:CDS | 50.0% |
| !! | TGTCCTACTGTTGGTGTTGG+TGG | - | chr4.1:18842671-18842690 | MS.gene36440:CDS | 50.0% |
| ACAGTAGGACAAACCCCAGC+TGG | + | chr4.1:18842662-18842681 | None:intergenic | 55.0% | |
| GCTGGGGTTTGTCCTACTGT+TGG | - | chr4.1:18842662-18842681 | MS.gene36440:CDS | 55.0% | |
| GTCAATGGAGAGGGGGATGT+TGG | - | chr4.1:18843586-18843605 | MS.gene36440:CDS | 55.0% | |
| ! | TGGGCTATTAGAGGTGGTGG+TGG | - | chr4.1:18842827-18842846 | MS.gene36440:CDS | 55.0% |
| !!! | GGTGGTGGTGGAGCTAGTTT+TGG | - | chr4.1:18842839-18842858 | MS.gene36440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18842131 | 18843762 | 18842131 | ID=MS.gene36440 |
| chr4.1 | mRNA | 18842131 | 18843762 | 18842131 | ID=MS.gene36440.t1;Parent=MS.gene36440 |
| chr4.1 | exon | 18842131 | 18843762 | 18842131 | ID=MS.gene36440.t1.exon1;Parent=MS.gene36440.t1 |
| chr4.1 | CDS | 18842131 | 18843762 | 18842131 | ID=cds.MS.gene36440.t1;Parent=MS.gene36440.t1 |
| Gene Sequence |
| Protein sequence |
