AlfalfaGEDB | MS.gene39253

M. sativa cultivar XinJiangDaYe / MS.gene39253

KEGG: K20827
GO: -
PFAM: PF04181.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39253.t1	XP_013467789.1	93.6	704	42	2	21	723	1	702	0.00E+00	1257.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39253.t1	F4K1B1	40.3	757	377	13	20	723	1	735	3.3e-130	467.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39253.t1	A0A072VJQ7	93.6	704	42	2	21	723	1	702	0.0e+00	1257.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene39253	0.864183	1.46E-64	-1.69E-46
MS.gene049159	MS.gene39253	0.808836	2.55E-50	-1.69E-46
MS.gene04918	MS.gene39253	0.810754	9.85E-51	-1.69E-46
MS.gene04920	MS.gene39253	0.804157	2.47E-49	-1.69E-46
MS.gene049254	MS.gene39253	0.835632	1.50E-56	-1.69E-46
MS.gene049283	MS.gene39253	0.839455	1.57E-57	-1.69E-46
MS.gene049368	MS.gene39253	0.824627	7.28E-54	-1.69E-46
MS.gene049452	MS.gene39253	0.80157	8.46E-49	-1.69E-46
MS.gene049499	MS.gene39253	0.855492	6.09E-62	-1.69E-46
MS.gene049744	MS.gene39253	0.848933	4.47E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39253.t1	MTR_1g055080	93.608	704	42	2	21	723	1	702	0.0	1340

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39253.t1	AT5G26760	49.138	348	164	5	381	723	91	430	3.57e-105	328
MS.gene39253.t1	AT5G26760	48.945	237	101	4	20	253	1	220	6.22e-59	213

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Find 130 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTAAGTTTCGTGT+AGG	0.601008	1.1:-42936299	None:intergenic
AAAATTCAGTTACTCTGAAA+TGG	0.402967	1.1:+42937839	MS.gene39253:CDS
AAATCAAATTCGGAAACTCC+AGG	0.537463	1.1:-42937871	None:intergenic
AAATCTTCTCTTAAATCTAA+CGG	0.559728	1.1:+42937406	MS.gene39253:CDS
AAATGAGGTGCTCGACCAAG+TGG	0.656919	1.1:-42940122	None:intergenic
AAATTTGAACTTGGAACCAA+TGG	0.481401	1.1:+42936431	MS.gene39253:CDS
AACAATGTTCTTAGGTTGTT+TGG	0.256285	1.1:+42936408	MS.gene39253:CDS
AACAGAAACTGCCACTGCAG+AGG	0.631088	1.1:+42936509	MS.gene39253:CDS
AACATTGGCAGAATTTAAAT+TGG	0.247143	1.1:-42937332	None:intergenic
AACTCAGTCGCTCTGTTACT+TGG	0.346040	1.1:+42937437	MS.gene39253:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGTAAGTTTCGTGT+AGG	-	chr1.1:42936302-42936321	None:intergenic	30.0%
AAATTTGAACTTGGAACCAA+TGG	+	chr1.1:42936431-42936450	MS.gene39253:CDS	30.0%
AATCAACAAAACTGTGGAAA+AGG	+	chr1.1:42938490-42938509	MS.gene39253:intron	30.0%
ACAAAGAGACAATGATTCTA+AGG	+	chr1.1:42936587-42936606	MS.gene39253:CDS	30.0%
AGAAACTGAACAATGTTCTT+AGG	+	chr1.1:42936400-42936419	MS.gene39253:CDS	30.0%
ATAAGGAATCAACAAAACTG+TGG	+	chr1.1:42938484-42938503	MS.gene39253:intron	30.0%
ATAAGGCTATCTAATAGTCT+AGG	-	chr1.1:42936675-42936694	None:intergenic	30.0%
ATCATTCCCAAGAAATACAT+AGG	-	chr1.1:42939882-42939901	None:intergenic	30.0%
ATGAAGATGTTGTAACTGAA+AGG	+	chr1.1:42936169-42936188	MS.gene39253:CDS	30.0%
ATGAGAAAATCAACAGTTCT+GGG	+	chr1.1:42937464-42937483	MS.gene39253:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	42935985	42940166	42935985	ID=MS.gene39253
chr1.1	mRNA	42935985	42940166	42935985	ID=MS.gene39253.t1;Parent=MS.gene39253
chr1.1	exon	42935985	42936633	42935985	ID=MS.gene39253.t1.exon1;Parent=MS.gene39253.t1
chr1.1	CDS	42935985	42936633	42935985	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1	exon	42936867	42937667	42936867	ID=MS.gene39253.t1.exon2;Parent=MS.gene39253.t1
chr1.1	CDS	42936867	42937667	42936867	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1	exon	42937755	42937948	42937755	ID=MS.gene39253.t1.exon3;Parent=MS.gene39253.t1
chr1.1	CDS	42937755	42937948	42937755	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1	exon	42938051	42938314	42938051	ID=MS.gene39253.t1.exon4;Parent=MS.gene39253.t1
chr1.1	CDS	42938051	42938314	42938051	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1	exon	42939019	42939177	42939019	ID=MS.gene39253.t1.exon5;Parent=MS.gene39253.t1
chr1.1	CDS	42939019	42939177	42939019	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1	exon	42940062	42940166	42940062	ID=MS.gene39253.t1.exon6;Parent=MS.gene39253.t1
chr1.1	CDS	42940062	42940166	42940062	ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1

Gene Sequence

>MS.gene39253

ATGTTAAAACTTATTGTGAAGTTCTTTGTGCCTTATGCTATTTCTAGAAACTTGCTTCTGATGGAGAAGAACCAGCTTGTTTTTGTCAAAGATGCTGTTTTGAAATTGCAATTGGCCCTCCTTGATGGTATCCAAAGAGAAGACCAGCTGTTTGCAGCTGGATCTGTGATATCAAAGAGTGACTATGAAGATGTTGTAACTGAAAGGTCCATCGCTAATTTGTGTGGGTATCCATTGTGCCACAATGCTTTGCCAACTGATCGTCCTCGGAAGGGTAGATATCGGATTTCATTGAAGGAGCACAAGGTGTATGACCTACACGAAACTTACATGTTTTGTTCCTCCGGTTGTGTAATTAACAGCAAAGCTTTTGCTGGGAGCCTGCAAGATGAGAGGTGCAATGTTTTAGACCTGGAGAAACTGAACAATGTTCTTAGGTTGTTTGGAAATTTGAACTTGGAACCAATGGAAAATTTTGGAAAGGATGGAGAATTAGATTTTTCTGACTTGAAAATCCAGGATAAAACAGAAACTGCCACTGCAGAGGTGTCTTTGGAACAGTGGGCTGGACCATCAAATGCAATTGAGGGTTATGTACCAAAACAAAGAGACAATGATTCTAAGGCTTCTAAGAAAAATGCTAAAAAAGGTGATAATTTTACAGCATCCAATATAATTTTTTGAAATCCTAGACTATTAGATAGCCTTATGCCATTTTTTGCTCAAAAGTGTCTGATTATTGTATTGTATTCTTTGTTTTCCTGATGGGTGATTGTAATATACTATAATTGTAAAGTTGAGGACCTAAGTTCTGAGAAATGGAATAGTGCAGTTACTTATTCTTATCTTTTCCATTTTCCCACTGCCGATTGTGCGTTGCAGGGTCCAAAGCTAATCGTGGCAAGTCGAATGATTATAAAAGTTTAATTGGCAGTGAGTTTGACTTCACGAGTACAATAATTACACAAGATGAGTATAGTGTTTCGAAAGTATCATTGGGGCAAACAGATACAACTGGTGATCATCAAATTAAGCTGCCATCCATATCGGAGAAGCCAAAAAGGGTTGGCAATAAAGTGGTCAGGAAAGATGAAAATATACAAGATCTTTCTTCATCTTTTGAGTGTACTGTAAATTTAAGTACCTCAACAAAAGAGAAGGAAATAGCGAATTCATGTAAAGATGTTCTCAAATCCTCTCATGATCCTTCTGTTGAAAAGAAAGTTGTCCACTCGATTACCATTTCAGAAAGAGAATGTGATGCAGAACAGAATGATTCTGAAAGGAAATCGATACAACTCAAAGAGGAAAATAGTATAGTTGCTGCTAACGATGATGCTTCCACTTCCAATTTAAATTCTGCCAATGTTGAAGAGAAATTCCTAATTGAAAAAGCAATTGAATCATGCCATACTAAACCAAAATCTTCTCTTAAATCTAACGGTAAAAAGAAACTCAGTCGCTCTGTTACTTGGGCTGATGAGAAAATCAACAGTTCTGGGAGTAAAGATCTTTGTGCAGTGAAAGAATTTGGAAACATTAAAAAGGAGTCTGGTGTGGCTGATAACGTAGATTCTGCTGATGAAGATATGTTACGTTGCACATTAGCAGAAGCTTGTGCAATTGCCTTGAGCCAAGCATCAGAAGCAGTTGCTTCTGGAGACTCGGATCCCAATGATGCTGGTAATTGATGTTTCTTTAGAGGATTTTCTATTTGAATGCTAAATTATTTCTAATTATATTTTTTGTGTACCAATGCATCTTGTGCAGTATCGGAAGCAGGAATCACTATACTGCCACATCCTCCCAATGCTGTTGAGGAAAGTACTGTGGACGATGATGACATTCTAGAAAAAAATTCAGTTACTCTGAAATGGCCAAAGAAACCTGGAGTTTCCGAATTTGATTTGTTTGACTCTGAAGACACGTGGTTTGATGCTCCACCAGAAGGTTTTAGTTTGACTGTAAGTCTAATAATTTTTTTTAAAAAAGTATATTAAGCTATACAAGTTTTTATATTATACTCAATTACATACTTTGTTTTTTTTTTCCGAACTTTCTTCCAGTTGTCACCTTTTGCTACTATGTGGAATGCCTTCTTTTCGTGGATAACATCATCTTCTTTGGCATATATATATGGGAGGGATGTAAGTTTTCATGAAGAATTTCTATCAGTTAATGGGAGAGAATATCCTAGCAAAATTGTCTTGACAGATGGTCGTTCATCTGAAATAAAACAAACATTAGTTGGTTGTCTTGCTCGAGCTTTACCTGCTGTTGTTGAAGAGCTCAGGTTGCCAATACCCGTAGATATATTAGAGCAAGCGATGGTAAGATTTTTAAGTTATCTGTTTATTATCCTTGTTTTAAACTAAGTCATTAAATATTTATTACACTCTGGTAGGCAAGATCTACTGCAATTTATACTGTATCGATTAAGACATCCCTATTATGTTTGTGACCCCTCTCCAAAAAAATGAAGAGCCACTCATACACAAAATAAGGAATCAACAAAACTGTGGAAAAGGAAAATTCGCTTTGCACCTATAGCACATTCTCTTTGTTGGAAGCAAATACTGAAACGATATCTCTTAACTCCAAGTTTCATCAATTTTAGCATATGTGAAAAGGAACTGGTTTAGATGGCAGTTTGAATAATTCTTTGCTTTTAAAGCATTGCTTTATTAATTGGAAAAATGAAATATAATTTAGAAACATTATAAATTTTCGAATGGTGACTAGTTATGCACAATGTTGGCGAGTTCTGGAATTTGCTTCCTGCAAAGGCAAGATAAGGTTGGTTGCTATTGACCCATACCACATTGGCAACCATTTCTTTGTTTCTTATACTCTGGTTTATGGGACAAGGCTGCCTTCTTTTTCAAAATTTAGAAATTTCCAAAAAATCATGGGTTTAAGGCTGTCTGTTGCAGTTAGGCTCAAGATATATTCTCATATCAGTATTGACAAAAGTTTTTCAATATATCCATTTTTGTTTATATGAGGATGAGTTAAGTGCACAACTTTCTTTTAGGTACGCTTGCTGGATACAATGTCGTTTGTGGAAGCACTACCAGCATTCAGAATGAAACAGTGGCAAGTGGTTGTTCTCTTGATCATTGATGCATTGTCTGTTTCTAGAGTGCCTACTCTTATCTCATACATGACGGACAGGAGGGACTTGTTTCTCAAGGTGAGACCTTTTGTTTATATTGTTCTGATTTATTATTTTACCCACATTACTATGGTAGCAATCTGATTGATGCGCATGAAGCATTTGATAATGATATCAGGTAAGGTGAGACCGTATGTTTATATTGTTCTGATTTATTATTTTACCCACATTACTATGGTAGCAATCTGATTGACGTGCATGAAGCATTTTATAATGATATCAGGTTGCATATATAAATATCCCGACAAACATTTAATCCTTATTATTTTATTTGCTAGTATTTTGGTTACTTTTTATCTGCATTTCCTTCACCTTTGTTTGTTTATTCTAAATGTGAACTTAAATAAACCCCACATAACTTAGCTGCCCCATGCTTTCTTAATGATAGAAGGTTGCATGGATATCCTGACAAAAACGCTTGATCCCTATTATTACATTTGTTAGTGTTTTGGTTACTTTTTATCAGTGTTTCCTTCACCTCCAAACTTAACAAAATAAAATCCCACATAACTTAGCTGCACCATGCTTAGATATTATTTTACTCTATAATTTGGTTTATCTAATGTGGTTCTCCAATAGTTGTAAATTGTAATTGCTATGCGGATTTTTAGTTAAAGTGAGGTTGACTACATGATGTGCACTCAAATTGCCATATGAATAAAATTTACTTGCATATGCATTTGACTTTTACTTTTTTTTTAAATAAACCACTTTCCCCACCTATGTATTTCTTGGGAATGATGTTAATATGGGCACTTGTTTTGGGTGGAAATGATGTATGTAAACTGAGGTTAATCCTATCTTATTATTTTCAGTTTTCTTATCTTATGTCATGTTTTGCAATGATTTTACTCAACGTTTAATTTGCTAACCATTGTTCTGGTGTTGGTTTGGTGAAGCAGGTTCTGAGTGGTTCACAAATAGGCAAGGAAGAGTATGACGTTTTGAAGGATTTCGTTGTACCACTTGGTCGAGCACCTCATTTCTCTTCTCAAAGTGGAGCTTGA

Protein sequence

>MS.gene39253.t1

MLKLIVKFFVPYAISRNLLLMEKNQLVFVKDAVLKLQLALLDGIQREDQLFAAGSVISKSDYEDVVTERSIANLCGYPLCHNALPTDRPRKGRYRISLKEHKVYDLHETYMFCSSGCVINSKAFAGSLQDERCNVLDLEKLNNVLRLFGNLNLEPMENFGKDGELDFSDLKIQDKTETATAEVSLEQWAGPSNAIEGYVPKQRDNDSKASKKNAKKGSKANRGKSNDYKSLIGSEFDFTSTIITQDEYSVSKVSLGQTDTTGDHQIKLPSISEKPKRVGNKVVRKDENIQDLSSSFECTVNLSTSTKEKEIANSCKDVLKSSHDPSVEKKVVHSITISERECDAEQNDSERKSIQLKEENSIVAANDDASTSNLNSANVEEKFLIEKAIESCHTKPKSSLKSNGKKKLSRSVTWADEKINSSGSKDLCAVKEFGNIKKESGVADNVDSADEDMLRCTLAEACAIALSQASEAVASGDSDPNDAVSEAGITILPHPPNAVEESTVDDDDILEKNSVTLKWPKKPGVSEFDLFDSEDTWFDAPPEGFSLTLSPFATMWNAFFSWITSSSLAYIYGRDVSFHEEFLSVNGREYPSKIVLTDGRSSEIKQTLVGCLARALPAVVEELRLPIPVDILEQAMVRLLDTMSFVEALPAFRMKQWQVVVLLIIDALSVSRVPTLISYMTDRRDLFLKVLSGSQIGKEEYDVLKDFVVPLGRAPHFSSQSGA