Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39253.t1 | XP_013467789.1 | 93.6 | 704 | 42 | 2 | 21 | 723 | 1 | 702 | 0.00E+00 | 1257.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39253.t1 | F4K1B1 | 40.3 | 757 | 377 | 13 | 20 | 723 | 1 | 735 | 3.3e-130 | 467.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39253.t1 | A0A072VJQ7 | 93.6 | 704 | 42 | 2 | 21 | 723 | 1 | 702 | 0.0e+00 | 1257.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene39253 | 0.864183 | 1.46E-64 | -1.69E-46 |
MS.gene049159 | MS.gene39253 | 0.808836 | 2.55E-50 | -1.69E-46 |
MS.gene04918 | MS.gene39253 | 0.810754 | 9.85E-51 | -1.69E-46 |
MS.gene04920 | MS.gene39253 | 0.804157 | 2.47E-49 | -1.69E-46 |
MS.gene049254 | MS.gene39253 | 0.835632 | 1.50E-56 | -1.69E-46 |
MS.gene049283 | MS.gene39253 | 0.839455 | 1.57E-57 | -1.69E-46 |
MS.gene049368 | MS.gene39253 | 0.824627 | 7.28E-54 | -1.69E-46 |
MS.gene049452 | MS.gene39253 | 0.80157 | 8.46E-49 | -1.69E-46 |
MS.gene049499 | MS.gene39253 | 0.855492 | 6.09E-62 | -1.69E-46 |
MS.gene049744 | MS.gene39253 | 0.848933 | 4.47E-60 | -1.69E-46 |
MS.gene049801 | MS.gene39253 | 0.819139 | 1.36E-52 | -1.69E-46 |
MS.gene049983 | MS.gene39253 | 0.850121 | 2.08E-60 | -1.69E-46 |
MS.gene050213 | MS.gene39253 | 0.823138 | 1.63E-53 | -1.69E-46 |
MS.gene050551 | MS.gene39253 | 0.837869 | 4.03E-57 | -1.69E-46 |
MS.gene050559 | MS.gene39253 | 0.801034 | 1.09E-48 | -1.69E-46 |
MS.gene050561 | MS.gene39253 | 0.807238 | 5.57E-50 | -1.69E-46 |
MS.gene050562 | MS.gene39253 | 0.805482 | 1.31E-49 | -1.69E-46 |
MS.gene050646 | MS.gene39253 | 0.817576 | 3.07E-52 | -1.69E-46 |
MS.gene050654 | MS.gene39253 | 0.832339 | 1.00E-55 | -1.69E-46 |
MS.gene050759 | MS.gene39253 | 0.81354 | 2.43E-51 | -1.69E-46 |
MS.gene051198 | MS.gene39253 | 0.851676 | 7.60E-61 | -1.69E-46 |
MS.gene051209 | MS.gene39253 | 0.841131 | 5.72E-58 | -1.69E-46 |
MS.gene051279 | MS.gene39253 | 0.825547 | 4.42E-54 | -1.69E-46 |
MS.gene051332 | MS.gene39253 | 0.841664 | 4.14E-58 | -1.69E-46 |
MS.gene051343 | MS.gene39253 | 0.803688 | 3.09E-49 | -1.69E-46 |
MS.gene051490 | MS.gene39253 | 0.800858 | 1.18E-48 | -1.69E-46 |
MS.gene051543 | MS.gene39253 | 0.828647 | 8.00E-55 | -1.69E-46 |
MS.gene051744 | MS.gene39253 | 0.842822 | 2.04E-58 | -1.69E-46 |
MS.gene051800 | MS.gene39253 | 0.832263 | 1.04E-55 | -1.69E-46 |
MS.gene052016 | MS.gene39253 | 0.810078 | 1.38E-50 | -1.69E-46 |
MS.gene052036 | MS.gene39253 | 0.808422 | 3.12E-50 | -1.69E-46 |
MS.gene052037 | MS.gene39253 | 0.830847 | 2.33E-55 | -1.69E-46 |
MS.gene052118 | MS.gene39253 | 0.843789 | 1.13E-58 | -1.69E-46 |
MS.gene052168 | MS.gene39253 | 0.818685 | 1.72E-52 | -1.69E-46 |
MS.gene052307 | MS.gene39253 | 0.842385 | 2.67E-58 | -1.69E-46 |
MS.gene052311 | MS.gene39253 | 0.800433 | 1.44E-48 | -1.69E-46 |
MS.gene052463 | MS.gene39253 | 0.822971 | 1.78E-53 | -1.69E-46 |
MS.gene052534 | MS.gene39253 | 0.805182 | 1.51E-49 | -1.69E-46 |
MS.gene052582 | MS.gene39253 | 0.820014 | 8.58E-53 | -1.69E-46 |
MS.gene052584 | MS.gene39253 | 0.822537 | 2.25E-53 | -1.69E-46 |
MS.gene052609 | MS.gene39253 | 0.856936 | 2.30E-62 | -1.69E-46 |
MS.gene052669 | MS.gene39253 | 0.806071 | 9.83E-50 | -1.69E-46 |
MS.gene052677 | MS.gene39253 | 0.800449 | 1.43E-48 | -1.69E-46 |
MS.gene052773 | MS.gene39253 | 0.805903 | 1.07E-49 | -1.69E-46 |
MS.gene052775 | MS.gene39253 | 0.852196 | 5.41E-61 | -1.69E-46 |
MS.gene052776 | MS.gene39253 | 0.839107 | 1.93E-57 | -1.69E-46 |
MS.gene052855 | MS.gene39253 | 0.817286 | 3.57E-52 | -1.69E-46 |
MS.gene053079 | MS.gene39253 | 0.853646 | 2.08E-61 | -1.69E-46 |
MS.gene05308 | MS.gene39253 | 0.83891 | 2.17E-57 | -1.69E-46 |
MS.gene05315 | MS.gene39253 | 0.811515 | 6.74E-51 | -1.69E-46 |
MS.gene053226 | MS.gene39253 | 0.833404 | 5.44E-56 | -1.69E-46 |
MS.gene053296 | MS.gene39253 | 0.808377 | 3.19E-50 | -1.69E-46 |
MS.gene053486 | MS.gene39253 | 0.803254 | 3.81E-49 | -1.69E-46 |
MS.gene053541 | MS.gene39253 | 0.809044 | 2.30E-50 | -1.69E-46 |
MS.gene053542 | MS.gene39253 | 0.820679 | 6.04E-53 | -1.69E-46 |
MS.gene053620 | MS.gene39253 | 0.800537 | 1.38E-48 | -1.69E-46 |
MS.gene053621 | MS.gene39253 | 0.813735 | 2.20E-51 | -1.69E-46 |
MS.gene054479 | MS.gene39253 | 0.846581 | 1.99E-59 | -1.69E-46 |
MS.gene054489 | MS.gene39253 | 0.808049 | 3.75E-50 | -1.69E-46 |
MS.gene054576 | MS.gene39253 | 0.83672 | 7.93E-57 | -1.69E-46 |
MS.gene05458 | MS.gene39253 | 0.814508 | 1.49E-51 | -1.69E-46 |
MS.gene054641 | MS.gene39253 | 0.851552 | 8.24E-61 | -1.69E-46 |
MS.gene054651 | MS.gene39253 | 0.845513 | 3.88E-59 | -1.69E-46 |
MS.gene054775 | MS.gene39253 | 0.804249 | 2.36E-49 | -1.69E-46 |
MS.gene054892 | MS.gene39253 | 0.842433 | 2.59E-58 | -1.69E-46 |
MS.gene054893 | MS.gene39253 | 0.841426 | 4.79E-58 | -1.69E-46 |
MS.gene054943 | MS.gene39253 | 0.822461 | 2.34E-53 | -1.69E-46 |
MS.gene055228 | MS.gene39253 | 0.805647 | 1.21E-49 | -1.69E-46 |
MS.gene055386 | MS.gene39253 | 0.819794 | 9.63E-53 | -1.69E-46 |
MS.gene055513 | MS.gene39253 | 0.852884 | 3.44E-61 | -1.69E-46 |
MS.gene055864 | MS.gene39253 | 0.811362 | 7.27E-51 | -1.69E-46 |
MS.gene055926 | MS.gene39253 | 0.803164 | 3.97E-49 | -1.69E-46 |
MS.gene056045 | MS.gene39253 | 0.848742 | 5.05E-60 | -1.69E-46 |
MS.gene056050 | MS.gene39253 | 0.857953 | 1.15E-62 | -1.69E-46 |
MS.gene056173 | MS.gene39253 | 0.801968 | 7.01E-49 | -1.69E-46 |
MS.gene056174 | MS.gene39253 | 0.822088 | 2.86E-53 | -1.69E-46 |
MS.gene056308 | MS.gene39253 | 0.824584 | 7.46E-54 | -1.69E-46 |
MS.gene056507 | MS.gene39253 | 0.840471 | 8.52E-58 | -1.69E-46 |
MS.gene056509 | MS.gene39253 | 0.806978 | 6.33E-50 | -1.69E-46 |
MS.gene056519 | MS.gene39253 | 0.825361 | 4.89E-54 | -1.69E-46 |
MS.gene056699 | MS.gene39253 | 0.830564 | 2.74E-55 | -1.69E-46 |
MS.gene056776 | MS.gene39253 | 0.805088 | 1.58E-49 | -1.69E-46 |
MS.gene056831 | MS.gene39253 | 0.825551 | 4.41E-54 | -1.69E-46 |
MS.gene05686 | MS.gene39253 | 0.874477 | 6.55E-68 | -1.69E-46 |
MS.gene05690 | MS.gene39253 | 0.800947 | 1.13E-48 | -1.69E-46 |
MS.gene056973 | MS.gene39253 | 0.866302 | 3.15E-65 | -1.69E-46 |
MS.gene057034 | MS.gene39253 | 0.840216 | 9.94E-58 | -1.69E-46 |
MS.gene057155 | MS.gene39253 | 0.801803 | 7.58E-49 | -1.69E-46 |
MS.gene057174 | MS.gene39253 | 0.811833 | 5.74E-51 | -1.69E-46 |
MS.gene057208 | MS.gene39253 | 0.839576 | 1.46E-57 | -1.69E-46 |
MS.gene057598 | MS.gene39253 | 0.817914 | 2.58E-52 | -1.69E-46 |
MS.gene057855 | MS.gene39253 | 0.823263 | 1.52E-53 | -1.69E-46 |
MS.gene057869 | MS.gene39253 | 0.82159 | 3.72E-53 | -1.69E-46 |
MS.gene057915 | MS.gene39253 | 0.805654 | 1.20E-49 | -1.69E-46 |
MS.gene058009 | MS.gene39253 | 0.801992 | 6.93E-49 | -1.69E-46 |
MS.gene058010 | MS.gene39253 | 0.847159 | 1.38E-59 | -1.69E-46 |
MS.gene058279 | MS.gene39253 | 0.813472 | 2.52E-51 | -1.69E-46 |
MS.gene058289 | MS.gene39253 | 0.845 | 5.33E-59 | -1.69E-46 |
MS.gene058292 | MS.gene39253 | 0.843429 | 1.41E-58 | -1.69E-46 |
MS.gene058427 | MS.gene39253 | 0.830292 | 3.19E-55 | -1.69E-46 |
MS.gene058520 | MS.gene39253 | 0.800201 | 1.61E-48 | -1.69E-46 |
MS.gene058781 | MS.gene39253 | 0.854332 | 1.32E-61 | -1.69E-46 |
MS.gene058783 | MS.gene39253 | 0.830718 | 2.51E-55 | -1.69E-46 |
MS.gene058919 | MS.gene39253 | 0.839023 | 2.03E-57 | -1.69E-46 |
MS.gene058979 | MS.gene39253 | 0.848457 | 6.05E-60 | -1.69E-46 |
MS.gene05897 | MS.gene39253 | 0.801537 | 8.59E-49 | -1.69E-46 |
MS.gene059439 | MS.gene39253 | 0.837265 | 5.76E-57 | -1.69E-46 |
MS.gene059570 | MS.gene39253 | 0.837151 | 6.16E-57 | -1.69E-46 |
MS.gene059625 | MS.gene39253 | 0.80354 | 3.32E-49 | -1.69E-46 |
MS.gene05985 | MS.gene39253 | -0.812995 | 3.20E-51 | -1.69E-46 |
MS.gene059965 | MS.gene39253 | 0.81227 | 4.61E-51 | -1.69E-46 |
MS.gene060011 | MS.gene39253 | 0.809002 | 2.35E-50 | -1.69E-46 |
MS.gene060085 | MS.gene39253 | 0.809345 | 1.98E-50 | -1.69E-46 |
MS.gene060365 | MS.gene39253 | 0.803358 | 3.62E-49 | -1.69E-46 |
MS.gene060373 | MS.gene39253 | 0.817509 | 3.18E-52 | -1.69E-46 |
MS.gene060435 | MS.gene39253 | 0.824364 | 8.40E-54 | -1.69E-46 |
MS.gene060520 | MS.gene39253 | 0.806115 | 9.62E-50 | -1.69E-46 |
MS.gene060522 | MS.gene39253 | 0.821603 | 3.70E-53 | -1.69E-46 |
MS.gene060527 | MS.gene39253 | 0.829918 | 3.93E-55 | -1.69E-46 |
MS.gene06052 | MS.gene39253 | 0.819435 | 1.16E-52 | -1.69E-46 |
MS.gene060777 | MS.gene39253 | 0.838254 | 3.21E-57 | -1.69E-46 |
MS.gene060785 | MS.gene39253 | 0.849329 | 3.47E-60 | -1.69E-46 |
MS.gene060932 | MS.gene39253 | 0.812804 | 3.53E-51 | -1.69E-46 |
MS.gene060933 | MS.gene39253 | 0.883947 | 2.91E-71 | -1.69E-46 |
MS.gene060935 | MS.gene39253 | 0.860914 | 1.48E-63 | -1.69E-46 |
MS.gene060937 | MS.gene39253 | 0.87593 | 2.09E-68 | -1.69E-46 |
MS.gene061100 | MS.gene39253 | 0.826415 | 2.75E-54 | -1.69E-46 |
MS.gene061188 | MS.gene39253 | 0.820501 | 6.64E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39253.t1 | MTR_1g055080 | 93.608 | 704 | 42 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1340 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39253.t1 | AT5G26760 | 49.138 | 348 | 164 | 5 | 381 | 723 | 91 | 430 | 3.57e-105 | 328 |
MS.gene39253.t1 | AT5G26760 | 48.945 | 237 | 101 | 4 | 20 | 253 | 1 | 220 | 6.22e-59 | 213 |
Find 130 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGTGCAGTGAAAGAATT+TGG | 0.146405 | 1.1:+42937496 | MS.gene39253:CDS |
TTGGAACCAATGGAAAATTT+TGG | 0.149339 | 1.1:+42936441 | MS.gene39253:CDS |
TCTTCTTTGGCATATATATA+TGG | 0.189186 | 1.1:+42938102 | MS.gene39253:CDS |
GAAGAATTTCTATCAGTTAA+TGG | 0.239586 | 1.1:+42938144 | MS.gene39253:CDS |
AACATTGGCAGAATTTAAAT+TGG | 0.247143 | 1.1:-42937332 | None:intergenic |
GAATCATTGTCTCTTTGTTT+TGG | 0.252817 | 1.1:-42936582 | None:intergenic |
AACAATGTTCTTAGGTTGTT+TGG | 0.256285 | 1.1:+42936408 | MS.gene39253:CDS |
AATGATTATAAAAGTTTAAT+TGG | 0.257744 | 1.1:+42936893 | MS.gene39253:CDS |
CCATATCGGAGAAGCCAAAA+AGG | 0.270922 | 1.1:+42937026 | MS.gene39253:CDS |
GCATCAGAAGCAGTTGCTTC+TGG | 0.271175 | 1.1:+42937622 | MS.gene39253:CDS |
GTGGATAACATCATCTTCTT+TGG | 0.277954 | 1.1:+42938089 | MS.gene39253:CDS |
CAAACAGCTGGTCTTCTCTT+TGG | 0.278459 | 1.1:-42936116 | None:intergenic |
TCGGAAACTCCAGGTTTCTT+TGG | 0.282638 | 1.1:-42937862 | None:intergenic |
AGAATTTGGAAACATTAAAA+AGG | 0.285942 | 1.1:+42937510 | MS.gene39253:CDS |
TTAGATTTAAGAGAAGATTT+TGG | 0.295505 | 1.1:-42937403 | None:intergenic |
AGAAACTGAACAATGTTCTT+AGG | 0.303436 | 1.1:+42936400 | MS.gene39253:CDS |
TGCCACTGCAGAGGTGTCTT+TGG | 0.317308 | 1.1:+42936518 | MS.gene39253:CDS |
AAGAATTTCTATCAGTTAAT+GGG | 0.321763 | 1.1:+42938145 | MS.gene39253:CDS |
GATGAGAAAATCAACAGTTC+TGG | 0.329888 | 1.1:+42937463 | MS.gene39253:CDS |
AACTCAGTCGCTCTGTTACT+TGG | 0.346040 | 1.1:+42937437 | MS.gene39253:CDS |
ACAAAGAGACAATGATTCTA+AGG | 0.351983 | 1.1:+42936587 | MS.gene39253:CDS |
TTGCAATTGGCCCTCCTTGA+TGG | 0.353204 | 1.1:+42936090 | MS.gene39253:CDS |
TAACCCTCAATTGCATTTGA+TGG | 0.359086 | 1.1:-42936555 | None:intergenic |
GTTCTGAGTGGTTCACAAAT+AGG | 0.360354 | 1.1:+42940062 | MS.gene39253:CDS |
GAAATAAAACAAACATTAGT+TGG | 0.365903 | 1.1:+42938213 | MS.gene39253:CDS |
CATTGCACCTCTCATCTTGC+AGG | 0.368177 | 1.1:-42936365 | None:intergenic |
CGACTTGCCACGATTAGCTT+TGG | 0.375326 | 1.1:-42936870 | None:intergenic |
ATCACATTCTCTTTCTGAAA+TGG | 0.377271 | 1.1:-42937224 | None:intergenic |
ACATCAATTACCAGCATCAT+TGG | 0.377762 | 1.1:-42937656 | None:intergenic |
ACAGTCAAACTAAAACCTTC+TGG | 0.396644 | 1.1:-42937928 | None:intergenic |
CTTCTTTGGCATATATATAT+GGG | 0.399659 | 1.1:+42938103 | MS.gene39253:CDS |
AAAATTCAGTTACTCTGAAA+TGG | 0.402967 | 1.1:+42937839 | MS.gene39253:CDS |
AGAGTCAAACAAATCAAATT+CGG | 0.409918 | 1.1:-42937881 | None:intergenic |
TTCTAGAAACTTGCTTCTGA+TGG | 0.413119 | 1.1:+42936026 | MS.gene39253:CDS |
CACTGTTTCATTCTGAATGC+TGG | 0.415973 | 1.1:-42939058 | None:intergenic |
CTGCTGTTGTTGAAGAGCTC+AGG | 0.417817 | 1.1:+42938256 | MS.gene39253:CDS |
CGCTTGCTCTAATATATCTA+CGG | 0.420079 | 1.1:-42938289 | None:intergenic |
TCTAATATATCTACGGGTAT+TGG | 0.431896 | 1.1:-42938282 | None:intergenic |
TAGTGTTTCGAAAGTATCAT+TGG | 0.437175 | 1.1:+42936961 | MS.gene39253:CDS |
TTTGCTGTTAATTACACAAC+CGG | 0.450833 | 1.1:-42936328 | None:intergenic |
ATGAGAAAATCAACAGTTCT+GGG | 0.455398 | 1.1:+42937464 | MS.gene39253:CDS |
AGTGTTTCGAAAGTATCATT+GGG | 0.455834 | 1.1:+42936962 | MS.gene39253:CDS |
CTGAAATGGCCAAAGAAACC+TGG | 0.462966 | 1.1:+42937853 | MS.gene39253:CDS |
TAGATATCGGATTTCATTGA+AGG | 0.467664 | 1.1:+42936260 | MS.gene39253:CDS |
GAAGACCAGCTGTTTGCAGC+TGG | 0.470370 | 1.1:+42936123 | MS.gene39253:CDS |
AATTAAGCTGCCATCCATAT+CGG | 0.473407 | 1.1:+42937012 | MS.gene39253:CDS |
AGTACTTTCCTCAACAGCAT+TGG | 0.477464 | 1.1:-42937791 | None:intergenic |
AAGCAACTGCTTCTGATGCT+TGG | 0.479108 | 1.1:-42937618 | None:intergenic |
AAATTTGAACTTGGAACCAA+TGG | 0.481401 | 1.1:+42936431 | MS.gene39253:CDS |
GTACTTTCCTCAACAGCATT+GGG | 0.483000 | 1.1:-42937790 | None:intergenic |
GAACATTGTTCAGTTTCTCC+AGG | 0.487506 | 1.1:-42936395 | None:intergenic |
TAGGAATTTCTCTTCAACAT+TGG | 0.487770 | 1.1:-42937347 | None:intergenic |
ACTCAGTCGCTCTGTTACTT+GGG | 0.488356 | 1.1:+42937438 | MS.gene39253:CDS |
GGCAGAATTTAAATTGGAAG+TGG | 0.495798 | 1.1:-42937326 | None:intergenic |
GCTGGATACAATGTCGTTTG+TGG | 0.496169 | 1.1:+42939027 | MS.gene39253:CDS |
CTTCTCTTTGGATACCATCA+AGG | 0.498483 | 1.1:-42936104 | None:intergenic |
TGGACCATCAAATGCAATTG+AGG | 0.498530 | 1.1:+42936551 | MS.gene39253:CDS |
CATCAATTACCAGCATCATT+GGG | 0.503869 | 1.1:-42937655 | None:intergenic |
GTGTCTTTGGAACAGTGGGC+TGG | 0.514994 | 1.1:+42936531 | MS.gene39253:CDS |
TGATGTTATCCACGAAAAGA+AGG | 0.516826 | 1.1:-42938079 | None:intergenic |
CAGATCCAGCTGCAAACAGC+TGG | 0.520179 | 1.1:-42936128 | None:intergenic |
GGGTTGGCAATAAAGTGGTC+AGG | 0.521721 | 1.1:+42937047 | MS.gene39253:CDS |
TTGGGGCAAACAGATACAAC+TGG | 0.522191 | 1.1:+42936980 | MS.gene39253:CDS |
AAGGATTTCGTTGTACCACT+TGG | 0.526604 | 1.1:+42940107 | MS.gene39253:CDS |
GACTCGGATCCCAATGATGC+TGG | 0.527843 | 1.1:+42937646 | MS.gene39253:CDS |
AGAGGTGTCTTTGGAACAGT+GGG | 0.528299 | 1.1:+42936527 | MS.gene39253:CDS |
AGCAGTTGCTTCTGGAGACT+CGG | 0.529316 | 1.1:+42937630 | MS.gene39253:CDS |
GTCCTCGGAAGGGTAGATAT+CGG | 0.529838 | 1.1:+42936247 | MS.gene39253:CDS |
GCTTGCTCTAATATATCTAC+GGG | 0.532496 | 1.1:-42938288 | None:intergenic |
CCTCATTTCTCTTCTCAAAG+TGG | 0.532595 | 1.1:+42940137 | MS.gene39253:CDS |
ACATCCTCCCAATGCTGTTG+AGG | 0.537391 | 1.1:+42937783 | MS.gene39253:CDS |
AAATCAAATTCGGAAACTCC+AGG | 0.537463 | 1.1:-42937871 | None:intergenic |
GCATTCCACATAGTAGCAAA+AGG | 0.537790 | 1.1:-42938057 | None:intergenic |
CTTTGCCAACTGATCGTCCT+CGG | 0.538022 | 1.1:+42936232 | MS.gene39253:CDS |
TGCTTCTGATGCTTGGCTCA+AGG | 0.539836 | 1.1:-42937611 | None:intergenic |
GTTGTTTGGAAATTTGAACT+TGG | 0.540609 | 1.1:+42936422 | MS.gene39253:CDS |
TCAACAGCATTGGGAGGATG+TGG | 0.540662 | 1.1:-42937781 | None:intergenic |
GCCAACTGATCGTCCTCGGA+AGG | 0.542811 | 1.1:+42936236 | MS.gene39253:CDS |
AGCAAAATTGTCTTGACAGA+TGG | 0.547346 | 1.1:+42938180 | MS.gene39253:CDS |
AAGTTTCTAGAAATAGCATA+AGG | 0.550886 | 1.1:-42936015 | None:intergenic |
CTGAGCTCTTCAACAACAGC+AGG | 0.551817 | 1.1:-42938255 | None:intergenic |
CCCTTCCGAGGACGATCAGT+TGG | 0.553458 | 1.1:-42936237 | None:intergenic |
TCTTGTGCAGTATCGGAAGC+AGG | 0.557558 | 1.1:+42937745 | MS.gene39253:intron |
GGACCATCAAATGCAATTGA+GGG | 0.558886 | 1.1:+42936552 | MS.gene39253:CDS |
AAATCTTCTCTTAAATCTAA+CGG | 0.559728 | 1.1:+42937406 | MS.gene39253:CDS |
TTTGGCTTCTCCGATATGGA+TGG | 0.560592 | 1.1:-42937022 | None:intergenic |
ATGAAGATGTTGTAACTGAA+AGG | 0.563773 | 1.1:+42936169 | MS.gene39253:CDS |
TGGTTTGATGCTCCACCAGA+AGG | 0.577882 | 1.1:+42937913 | MS.gene39253:CDS |
CAGGAGGGACTTGTTTCTCA+AGG | 0.580423 | 1.1:+42939156 | MS.gene39253:CDS |
TTATCTCATACATGACGGAC+AGG | 0.585032 | 1.1:+42939137 | MS.gene39253:CDS |
AGGTCCATCGCTAATTTGTG+TGG | 0.588401 | 1.1:+42936189 | MS.gene39253:CDS |
TTCAACAGAAGGATCATGAG+AGG | 0.591346 | 1.1:-42937179 | None:intergenic |
GATCAGTTGGCAAAGCATTG+TGG | 0.591887 | 1.1:-42936224 | None:intergenic |
CTTTGGCATATATATATGGG+AGG | 0.592014 | 1.1:+42938106 | MS.gene39253:CDS |
CAGAGGTGTCTTTGGAACAG+TGG | 0.592215 | 1.1:+42936526 | MS.gene39253:CDS |
CAGAACAGAATGATTCTGAA+AGG | 0.593966 | 1.1:+42937248 | MS.gene39253:CDS |
CTCATACATGACGGACAGGA+GGG | 0.594470 | 1.1:+42939141 | MS.gene39253:CDS |
AAGTACCTCAACAAAAGAGA+AGG | 0.595618 | 1.1:+42937123 | MS.gene39253:CDS |
AAAACATGTAAGTTTCGTGT+AGG | 0.601008 | 1.1:-42936299 | None:intergenic |
GAAATCGATACAACTCAAAG+AGG | 0.607557 | 1.1:+42937270 | MS.gene39253:CDS |
TTCCAAAGACACCTCTGCAG+TGG | 0.615979 | 1.1:-42936520 | None:intergenic |
TTTGGCATATATATATGGGA+GGG | 0.616710 | 1.1:+42938107 | MS.gene39253:CDS |
GATTTCATTGAAGGAGCACA+AGG | 0.625957 | 1.1:+42936269 | MS.gene39253:CDS |
GTCAAACTAAAACCTTCTGG+TGG | 0.626841 | 1.1:-42937925 | None:intergenic |
TCTCATACATGACGGACAGG+AGG | 0.627733 | 1.1:+42939140 | MS.gene39253:CDS |
TACTCTTATCTCATACATGA+CGG | 0.628188 | 1.1:+42939132 | MS.gene39253:CDS |
GGCAAAGCATTGTGGCACAA+TGG | 0.628386 | 1.1:-42936216 | None:intergenic |
CTGGGAGCCTGCAAGATGAG+AGG | 0.628600 | 1.1:+42936358 | MS.gene39253:CDS |
AACAGAAACTGCCACTGCAG+AGG | 0.631088 | 1.1:+42936509 | MS.gene39253:CDS |
CAGAATGAAACAGTGGCAAG+TGG | 0.634857 | 1.1:+42939066 | MS.gene39253:CDS |
CCACTTTGAGAAGAGAAATG+AGG | 0.636699 | 1.1:-42940137 | None:intergenic |
GAGTGGTTCACAAATAGGCA+AGG | 0.636728 | 1.1:+42940067 | MS.gene39253:CDS |
CTCTTTGGATACCATCAAGG+AGG | 0.637806 | 1.1:-42936101 | None:intergenic |
TTTCTGAAATGGTAATCGAG+TGG | 0.640137 | 1.1:-42937213 | None:intergenic |
CCAACTGATCGTCCTCGGAA+GGG | 0.642742 | 1.1:+42936237 | MS.gene39253:CDS |
GGTCCATCGCTAATTTGTGT+GGG | 0.648300 | 1.1:+42936190 | MS.gene39253:CDS |
ATACCCACACAAATTAGCGA+TGG | 0.649576 | 1.1:-42936193 | None:intergenic |
CTTTCCTCAACAGCATTGGG+AGG | 0.652955 | 1.1:-42937787 | None:intergenic |
TCTTTGGATACCATCAAGGA+GGG | 0.655363 | 1.1:-42936100 | None:intergenic |
GTCATGTATGAGATAAGAGT+AGG | 0.656182 | 1.1:-42939130 | None:intergenic |
AAATGAGGTGCTCGACCAAG+TGG | 0.656919 | 1.1:-42940122 | None:intergenic |
AGATATATTAGAGCAAGCGA+TGG | 0.661113 | 1.1:+42938293 | MS.gene39253:CDS |
TGTTTGACTCTGAAGACACG+TGG | 0.666494 | 1.1:+42937893 | MS.gene39253:CDS |
ATCCGATATCTACCCTTCCG+AGG | 0.667151 | 1.1:-42936249 | None:intergenic |
TTGGTGAAGCAGGTTCTGAG+TGG | 0.679031 | 1.1:+42940050 | MS.gene39253:intron |
GTGTTTCGAAAGTATCATTG+GGG | 0.679627 | 1.1:+42936963 | MS.gene39253:CDS |
GCTGTTAATTACACAACCGG+AGG | 0.683543 | 1.1:-42936325 | None:intergenic |
GCAGGGTCCAAAGCTAATCG+TGG | 0.689841 | 1.1:+42936863 | MS.gene39253:intron |
CAGCATTCAGAATGAAACAG+TGG | 0.697410 | 1.1:+42939059 | MS.gene39253:CDS |
TGCTGTTGAGGAAAGTACTG+TGG | 0.706731 | 1.1:+42937795 | MS.gene39253:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGATTATAAAAGTTTAAT+TGG | + | chr1.1:42936893-42936912 | MS.gene39253:CDS | 10.0% |
!!! | TATTATTTTACTCTATAATT+TGG | + | chr1.1:42939691-42939710 | MS.gene39253:intron | 10.0% |
!! | AAAACTGAAAATAATAAGAT+AGG | - | chr1.1:42939959-42939978 | None:intergenic | 15.0% |
!! | AGGATTTCAAAAAATTATAT+TGG | - | chr1.1:42936655-42936674 | None:intergenic | 15.0% |
!! | ATTAAATATTTATTACACTC+TGG | + | chr1.1:42938363-42938382 | MS.gene39253:intron | 15.0% |
!! | TACTAGCAAATAAAATAATA+AGG | - | chr1.1:42939420-42939439 | None:intergenic | 15.0% |
!!! | AAACATTATAAATTTTCGAA+TGG | + | chr1.1:42938697-42938716 | MS.gene39253:intron | 15.0% |
!!! | TATTTTATTTGCTAGTATTT+TGG | + | chr1.1:42939423-42939442 | MS.gene39253:intron | 15.0% |
!!! | TTTCTAAATTTTGAAAAAGA+AGG | - | chr1.1:42938860-42938879 | None:intergenic | 15.0% |
!! | AAATCTTCTCTTAAATCTAA+CGG | + | chr1.1:42937406-42937425 | MS.gene39253:CDS | 20.0% |
!! | AAGAATTTCTATCAGTTAAT+GGG | + | chr1.1:42938145-42938164 | MS.gene39253:CDS | 20.0% |
!! | AATAAGGATTAAATGTTTGT+CGG | - | chr1.1:42939404-42939423 | None:intergenic | 20.0% |
!! | ACACTAACAAATGTAATAAT+AGG | - | chr1.1:42939587-42939606 | None:intergenic | 20.0% |
!! | AGAAATTTCCAAAAAATCAT+GGG | + | chr1.1:42938875-42938894 | MS.gene39253:intron | 20.0% |
!! | AGAATTTGGAAACATTAAAA+AGG | + | chr1.1:42937510-42937529 | MS.gene39253:CDS | 20.0% |
!! | AGTAAAATAATATCTAAGCA+TGG | - | chr1.1:42939683-42939702 | None:intergenic | 20.0% |
!! | ATACTATAATTGTAAAGTTG+AGG | + | chr1.1:42936764-42936783 | MS.gene39253:intron | 20.0% |
!! | ATCAGAACAATATAAACAAA+AGG | - | chr1.1:42939187-42939206 | None:intergenic | 20.0% |
!! | ATCAGAACAATATAAACATA+CGG | - | chr1.1:42939292-42939311 | None:intergenic | 20.0% |
!! | CAATTACAATTTACAACTAT+TGG | - | chr1.1:42939735-42939754 | None:intergenic | 20.0% |
!! | CACTAACAAATGTAATAATA+GGG | - | chr1.1:42939586-42939605 | None:intergenic | 20.0% |
!! | GAAATAAAACAAACATTAGT+TGG | + | chr1.1:42938213-42938232 | MS.gene39253:CDS | 20.0% |
!! | TAGAAATTTCCAAAAAATCA+TGG | + | chr1.1:42938874-42938893 | MS.gene39253:intron | 20.0% |
!! | TCTAAGAAAAATGCTAAAAA+AGG | + | chr1.1:42936612-42936631 | MS.gene39253:CDS | 20.0% |
!!! | AAGCATTTTATAATGATATC+AGG | + | chr1.1:42939361-42939380 | MS.gene39253:intron | 20.0% |
!!! | ATAATTTGGTTTATCTAATG+TGG | + | chr1.1:42939705-42939724 | MS.gene39253:intron | 20.0% |
!!! | ATTCAATTGCTTTTTCAATT+AGG | - | chr1.1:42937369-42937388 | None:intergenic | 20.0% |
!!! | CATTTAGAATAAACAAACAA+AGG | - | chr1.1:42939474-42939493 | None:intergenic | 20.0% |
!!! | GCAAGTAAATTTTATTCATA+TGG | - | chr1.1:42939812-42939831 | None:intergenic | 20.0% |
!!! | GGATTTTATTTTGTTAAGTT+TGG | - | chr1.1:42939643-42939662 | None:intergenic | 20.0% |
!!! | TAAAGCATTGCTTTATTAAT+TGG | + | chr1.1:42938654-42938673 | MS.gene39253:intron | 20.0% |
!!! | TAATGACTTAGTTTAAAACA+AGG | - | chr1.1:42938347-42938366 | None:intergenic | 20.0% |
!!! | TATCCATTTTTGTTTATATG+AGG | + | chr1.1:42938968-42938987 | MS.gene39253:intron | 20.0% |
!!! | TATTACATTTGTTAGTGTTT+TGG | + | chr1.1:42939589-42939608 | MS.gene39253:intron | 20.0% |
!!! | TTAGATTTAAGAGAAGATTT+TGG | - | chr1.1:42937406-42937425 | None:intergenic | 20.0% |
!!! | TTTTATTTTGTTAAGTTTGG+AGG | - | chr1.1:42939640-42939659 | None:intergenic | 20.0% |
! | AACATTGGCAGAATTTAAAT+TGG | - | chr1.1:42937335-42937354 | None:intergenic | 25.0% |
! | AATATTTATTACACTCTGGT+AGG | + | chr1.1:42938367-42938386 | MS.gene39253:intron | 25.0% |
! | AGAGTCAAACAAATCAAATT+CGG | - | chr1.1:42937884-42937903 | None:intergenic | 25.0% |
! | ATAAGGATTAAATGTTTGTC+GGG | - | chr1.1:42939403-42939422 | None:intergenic | 25.0% |
! | ATGCTAAAATTGATGAAACT+TGG | - | chr1.1:42938585-42938604 | None:intergenic | 25.0% |
! | CATCCTCATATAAACAAAAA+TGG | - | chr1.1:42938974-42938993 | None:intergenic | 25.0% |
! | CTTCTTTGGCATATATATAT+GGG | + | chr1.1:42938103-42938122 | MS.gene39253:CDS | 25.0% |
! | GAAGAATTTCTATCAGTTAA+TGG | + | chr1.1:42938144-42938163 | MS.gene39253:CDS | 25.0% |
! | GAGTATAAGAAACAAAGAAA+TGG | - | chr1.1:42938817-42938836 | None:intergenic | 25.0% |
! | TCTTCTTTGGCATATATATA+TGG | + | chr1.1:42938102-42938121 | MS.gene39253:CDS | 25.0% |
! | TGTAAATTGTAATTGCTATG+CGG | + | chr1.1:42939740-42939759 | MS.gene39253:intron | 25.0% |
!! | AAAATTCAGTTACTCTGAAA+TGG | + | chr1.1:42937839-42937858 | MS.gene39253:CDS | 25.0% |
!! | AAGTTTCTAGAAATAGCATA+AGG | - | chr1.1:42936018-42936037 | None:intergenic | 25.0% |
!! | TTCTATCATTAAGAAAGCAT+GGG | - | chr1.1:42939530-42939549 | None:intergenic | 25.0% |
!! | TTTCTTATACTCTGGTTTAT+GGG | + | chr1.1:42938825-42938844 | MS.gene39253:intron | 25.0% |
!! | TTTCTTTGTTTCTTATACTC+TGG | + | chr1.1:42938817-42938836 | MS.gene39253:intron | 25.0% |
!!! | AAGCATTTGATAATGATATC+AGG | + | chr1.1:42939256-42939275 | MS.gene39253:intron | 25.0% |
!!! | CAATTTTAGCATATGTGAAA+AGG | + | chr1.1:42938593-42938612 | MS.gene39253:intron | 25.0% |
!!! | TTATTTTACCCACATTACTA+TGG | + | chr1.1:42939210-42939229 | MS.gene39253:intron | 25.0% |
!!! | TTTGATAATGATATCAGGTA+AGG | + | chr1.1:42939261-42939280 | MS.gene39253:intron | 25.0% |
AAAACATGTAAGTTTCGTGT+AGG | - | chr1.1:42936302-42936321 | None:intergenic | 30.0% | |
AAATTTGAACTTGGAACCAA+TGG | + | chr1.1:42936431-42936450 | MS.gene39253:CDS | 30.0% | |
AATCAACAAAACTGTGGAAA+AGG | + | chr1.1:42938490-42938509 | MS.gene39253:intron | 30.0% | |
ACAAAGAGACAATGATTCTA+AGG | + | chr1.1:42936587-42936606 | MS.gene39253:CDS | 30.0% | |
AGAAACTGAACAATGTTCTT+AGG | + | chr1.1:42936400-42936419 | MS.gene39253:CDS | 30.0% | |
ATAAGGAATCAACAAAACTG+TGG | + | chr1.1:42938484-42938503 | MS.gene39253:intron | 30.0% | |
ATAAGGCTATCTAATAGTCT+AGG | - | chr1.1:42936675-42936694 | None:intergenic | 30.0% | |
ATCATTCCCAAGAAATACAT+AGG | - | chr1.1:42939882-42939901 | None:intergenic | 30.0% | |
ATGAAGATGTTGTAACTGAA+AGG | + | chr1.1:42936169-42936188 | MS.gene39253:CDS | 30.0% | |
ATGAGAAAATCAACAGTTCT+GGG | + | chr1.1:42937464-42937483 | MS.gene39253:CDS | 30.0% | |
CATGCTTTCTTAATGATAGA+AGG | + | chr1.1:42939529-42939548 | MS.gene39253:intron | 30.0% | |
CTTCTATCATTAAGAAAGCA+TGG | - | chr1.1:42939531-42939550 | None:intergenic | 30.0% | |
CTTGGGAATGATGTTAATAT+GGG | + | chr1.1:42939890-42939909 | MS.gene39253:intron | 30.0% | |
GAAATGATGTATGTAAACTG+AGG | + | chr1.1:42939928-42939947 | MS.gene39253:intron | 30.0% | |
GAATAAACAAACAAAGGTGA+AGG | - | chr1.1:42939468-42939487 | None:intergenic | 30.0% | |
GGTAATTGATGTTTCTTTAG+AGG | + | chr1.1:42937667-42937686 | MS.gene39253:intron | 30.0% | |
GTTGTTTGGAAATTTGAACT+TGG | + | chr1.1:42936422-42936441 | MS.gene39253:CDS | 30.0% | |
TACTCTTATCTCATACATGA+CGG | + | chr1.1:42939132-42939151 | MS.gene39253:CDS | 30.0% | |
TAGATATCGGATTTCATTGA+AGG | + | chr1.1:42936260-42936279 | MS.gene39253:CDS | 30.0% | |
TAGGAATTTCTCTTCAACAT+TGG | - | chr1.1:42937350-42937369 | None:intergenic | 30.0% | |
TATTCCATTTCTCAGAACTT+AGG | - | chr1.1:42936791-42936810 | None:intergenic | 30.0% | |
TCCAAAAAATCATGGGTTTA+AGG | + | chr1.1:42938882-42938901 | MS.gene39253:intron | 30.0% | |
TCTAATATATCTACGGGTAT+TGG | - | chr1.1:42938285-42938304 | None:intergenic | 30.0% | |
TCTTGGGAATGATGTTAATA+TGG | + | chr1.1:42939889-42939908 | MS.gene39253:intron | 30.0% | |
TTTGAGCAAAAAATGGCATA+AGG | - | chr1.1:42936692-42936711 | None:intergenic | 30.0% | |
TTTGGCATATATATATGGGA+GGG | + | chr1.1:42938107-42938126 | MS.gene39253:CDS | 30.0% | |
! | AACAATGTTCTTAGGTTGTT+TGG | + | chr1.1:42936408-42936427 | MS.gene39253:CDS | 30.0% |
! | ACAACTTTCTTTTCAACAGA+AGG | - | chr1.1:42937193-42937212 | None:intergenic | 30.0% |
! | AGACACTTTTGAGCAAAAAA+TGG | - | chr1.1:42936699-42936718 | None:intergenic | 30.0% |
! | ATCACATTCTCTTTCTGAAA+TGG | - | chr1.1:42937227-42937246 | None:intergenic | 30.0% |
! | GTTTCTTATACTCTGGTTTA+TGG | + | chr1.1:42938824-42938843 | MS.gene39253:intron | 30.0% |
! | TAAGTGCACAACTTTCTTTT+AGG | + | chr1.1:42938997-42939016 | MS.gene39253:intron | 30.0% |
! | TATTTCCTTCTCTTTTGTTG+AGG | - | chr1.1:42937131-42937150 | None:intergenic | 30.0% |
! | TCCTTTCCAAAATTTTCCAT+TGG | - | chr1.1:42936450-42936469 | None:intergenic | 30.0% |
! | TCTATCATTAAGAAAGCATG+GGG | - | chr1.1:42939529-42939548 | None:intergenic | 30.0% |
! | TTGGAACCAATGGAAAATTT+TGG | + | chr1.1:42936441-42936460 | MS.gene39253:CDS | 30.0% |
!! | ACCAATGGAAAATTTTGGAA+AGG | + | chr1.1:42936446-42936465 | MS.gene39253:CDS | 30.0% |
!! | AGTGTTTCGAAAGTATCATT+GGG | + | chr1.1:42936962-42936981 | MS.gene39253:CDS | 30.0% |
!! | ATGGAAAATTTTGGAAAGGA+TGG | + | chr1.1:42936450-42936469 | MS.gene39253:CDS | 30.0% |
!! | GAATCATTGTCTCTTTGTTT+TGG | - | chr1.1:42936585-42936604 | None:intergenic | 30.0% |
!! | TAATTTGCTAACCATTGTTC+TGG | + | chr1.1:42940020-42940039 | MS.gene39253:intron | 30.0% |
!! | TAGTGTTTCGAAAGTATCAT+TGG | + | chr1.1:42936961-42936980 | MS.gene39253:CDS | 30.0% |
!! | TTAATATGGGCACTTGTTTT+GGG | + | chr1.1:42939903-42939922 | MS.gene39253:intron | 30.0% |
!! | TTTGCTGTTAATTACACAAC+CGG | - | chr1.1:42936331-42936350 | None:intergenic | 30.0% |
!! | TTTTTCTGACTTGAAAATCC+AGG | + | chr1.1:42936482-42936501 | MS.gene39253:CDS | 30.0% |
!!! | GAGAAGATTTTGGTTTAGTA+TGG | - | chr1.1:42937396-42937415 | None:intergenic | 30.0% |
!!! | GTATTCTTTGTTTTCCTGAT+GGG | + | chr1.1:42936731-42936750 | MS.gene39253:intron | 30.0% |
!!! | TGCTGTTTTGAAATTGCAAT+TGG | + | chr1.1:42936077-42936096 | MS.gene39253:CDS | 30.0% |
!!! | TGTATTCTTTGTTTTCCTGA+TGG | + | chr1.1:42936730-42936749 | MS.gene39253:intron | 30.0% |
!!! | TTCCTTATTTTGTGTATGAG+TGG | - | chr1.1:42938472-42938491 | None:intergenic | 30.0% |
AAATCAAATTCGGAAACTCC+AGG | - | chr1.1:42937874-42937893 | None:intergenic | 35.0% | |
AAGTACCTCAACAAAAGAGA+AGG | + | chr1.1:42937123-42937142 | MS.gene39253:CDS | 35.0% | |
AATTAAGCTGCCATCCATAT+CGG | + | chr1.1:42937012-42937031 | MS.gene39253:CDS | 35.0% | |
ACAGTCAAACTAAAACCTTC+TGG | - | chr1.1:42937931-42937950 | None:intergenic | 35.0% | |
ACATCAATTACCAGCATCAT+TGG | - | chr1.1:42937659-42937678 | None:intergenic | 35.0% | |
AGATATATTAGAGCAAGCGA+TGG | + | chr1.1:42938293-42938312 | MS.gene39253:CDS | 35.0% | |
AGATTGCTACCATAGTAATG+TGG | - | chr1.1:42939222-42939241 | None:intergenic | 35.0% | |
AGCAAAATTGTCTTGACAGA+TGG | + | chr1.1:42938180-42938199 | MS.gene39253:CDS | 35.0% | |
AGCCACTCATACACAAAATA+AGG | + | chr1.1:42938467-42938486 | MS.gene39253:intron | 35.0% | |
ATTCCCAAGAAATACATAGG+TGG | - | chr1.1:42939879-42939898 | None:intergenic | 35.0% | |
CAACAAAGAGAATGTGCTAT+AGG | - | chr1.1:42938531-42938550 | None:intergenic | 35.0% | |
CAGAACAGAATGATTCTGAA+AGG | + | chr1.1:42937248-42937267 | MS.gene39253:CDS | 35.0% | |
CATCAATTACCAGCATCATT+GGG | - | chr1.1:42937658-42937677 | None:intergenic | 35.0% | |
CATCTTTGACAAAAACAAGC+TGG | - | chr1.1:42936059-42936078 | None:intergenic | 35.0% | |
CGCTTGCTCTAATATATCTA+CGG | - | chr1.1:42938292-42938311 | None:intergenic | 35.0% | |
CTATAGCACATTCTCTTTGT+TGG | + | chr1.1:42938529-42938548 | MS.gene39253:intron | 35.0% | |
CTTAATGATAGAAGGTTGCA+TGG | + | chr1.1:42939537-42939556 | MS.gene39253:intron | 35.0% | |
CTTTGGCATATATATATGGG+AGG | + | chr1.1:42938106-42938125 | MS.gene39253:CDS | 35.0% | |
CTTTGTGCAGTGAAAGAATT+TGG | + | chr1.1:42937496-42937515 | MS.gene39253:CDS | 35.0% | |
GAAATCGATACAACTCAAAG+AGG | + | chr1.1:42937270-42937289 | MS.gene39253:CDS | 35.0% | |
GATGAGAAAATCAACAGTTC+TGG | + | chr1.1:42937463-42937482 | MS.gene39253:CDS | 35.0% | |
GATTGCTACCATAGTAATGT+GGG | - | chr1.1:42939221-42939240 | None:intergenic | 35.0% | |
GCTTGCTCTAATATATCTAC+GGG | - | chr1.1:42938291-42938310 | None:intergenic | 35.0% | |
GGAAACATTAAAAAGGAGTC+TGG | + | chr1.1:42937517-42937536 | MS.gene39253:CDS | 35.0% | |
GGCAGAATTTAAATTGGAAG+TGG | - | chr1.1:42937329-42937348 | None:intergenic | 35.0% | |
GTATATTACAATCACCCATC+AGG | - | chr1.1:42936748-42936767 | None:intergenic | 35.0% | |
GTCATGTATGAGATAAGAGT+AGG | - | chr1.1:42939133-42939152 | None:intergenic | 35.0% | |
GTGGATAACATCATCTTCTT+TGG | + | chr1.1:42938089-42938108 | MS.gene39253:CDS | 35.0% | |
TAACCCTCAATTGCATTTGA+TGG | - | chr1.1:42936558-42936577 | None:intergenic | 35.0% | |
TAGCATATGTGAAAAGGAAC+TGG | + | chr1.1:42938599-42938618 | MS.gene39253:intron | 35.0% | |
TGATGTTATCCACGAAAAGA+AGG | - | chr1.1:42938082-42938101 | None:intergenic | 35.0% | |
TTCCCAAGAAATACATAGGT+GGG | - | chr1.1:42939878-42939897 | None:intergenic | 35.0% | |
TTTGTTAAGTTTGGAGGTGA+AGG | - | chr1.1:42939634-42939653 | None:intergenic | 35.0% | |
! | AAAAAGGGTTGGCAATAAAG+TGG | + | chr1.1:42937042-42937061 | MS.gene39253:CDS | 35.0% |
! | ACTTTATTGCCAACCCTTTT+TGG | - | chr1.1:42937043-42937062 | None:intergenic | 35.0% |
! | ATTAACAGCAAAGCTTTTGC+TGG | + | chr1.1:42936339-42936358 | MS.gene39253:CDS | 35.0% |
! | GTTAATATGGGCACTTGTTT+TGG | + | chr1.1:42939902-42939921 | MS.gene39253:intron | 35.0% |
! | TCTGTCAAGACAATTTTGCT+AGG | - | chr1.1:42938180-42938199 | None:intergenic | 35.0% |
! | TGAAAAGGAACTGGTTTAGA+TGG | + | chr1.1:42938608-42938627 | MS.gene39253:intron | 35.0% |
! | TGACTAGTTATGCACAATGT+TGG | + | chr1.1:42938720-42938739 | MS.gene39253:intron | 35.0% |
! | TTAACAGCAAAGCTTTTGCT+GGG | + | chr1.1:42936340-42936359 | MS.gene39253:CDS | 35.0% |
! | TTCTAGAAACTTGCTTCTGA+TGG | + | chr1.1:42936026-42936045 | MS.gene39253:CDS | 35.0% |
!! | ACTTACATGTTTTGTTCCTC+CGG | + | chr1.1:42936309-42936328 | MS.gene39253:CDS | 35.0% |
!! | GTGTTTCGAAAGTATCATTG+GGG | + | chr1.1:42936963-42936982 | MS.gene39253:CDS | 35.0% |
!! | TTTCTGAAATGGTAATCGAG+TGG | - | chr1.1:42937216-42937235 | None:intergenic | 35.0% |
!!! | CTCTTCATTTTTTTGGAGAG+GGG | - | chr1.1:42938449-42938468 | None:intergenic | 35.0% |
!!! | GCCTTAAACCCATGATTTTT+TGG | - | chr1.1:42938886-42938905 | None:intergenic | 35.0% |
!!! | GCGGATTTTTAGTTAAAGTG+AGG | + | chr1.1:42939759-42939778 | MS.gene39253:intron | 35.0% |
!!! | GCTCTTCATTTTTTTGGAGA+GGG | - | chr1.1:42938450-42938469 | None:intergenic | 35.0% |
!!! | TGAGTGGCTCTTCATTTTTT+TGG | - | chr1.1:42938456-42938475 | None:intergenic | 35.0% |
AAATACATAGGTGGGGAAAG+TGG | - | chr1.1:42939870-42939889 | None:intergenic | 40.0% | |
AAATGGTTGCCAATGTGGTA+TGG | - | chr1.1:42938800-42938819 | None:intergenic | 40.0% | |
AAGGATTTCGTTGTACCACT+TGG | + | chr1.1:42940107-42940126 | MS.gene39253:CDS | 40.0% | |
AATGGTTGCCAATGTGGTAT+GGG | - | chr1.1:42938799-42938818 | None:intergenic | 40.0% | |
AGAGGGGTCACAAACATAAT+AGG | - | chr1.1:42938433-42938452 | None:intergenic | 40.0% | |
AGTACTTTCCTCAACAGCAT+TGG | - | chr1.1:42937794-42937813 | None:intergenic | 40.0% | |
ATACCCACACAAATTAGCGA+TGG | - | chr1.1:42936196-42936215 | None:intergenic | 40.0% | |
ATGGTGCAGCTAAGTTATGT+GGG | - | chr1.1:42939664-42939683 | None:intergenic | 40.0% | |
CAAAGAAATGGTTGCCAATG+TGG | - | chr1.1:42938805-42938824 | None:intergenic | 40.0% | |
CAATGCATCTTGTGCAGTAT+CGG | + | chr1.1:42937738-42937757 | MS.gene39253:intron | 40.0% | |
CACTGTTTCATTCTGAATGC+TGG | - | chr1.1:42939061-42939080 | None:intergenic | 40.0% | |
CAGCATTCAGAATGAAACAG+TGG | + | chr1.1:42939059-42939078 | MS.gene39253:CDS | 40.0% | |
CATATCGGAGAAGCCAAAAA+GGG | + | chr1.1:42937027-42937046 | MS.gene39253:CDS | 40.0% | |
CATTAAAAAGGAGTCTGGTG+TGG | + | chr1.1:42937522-42937541 | MS.gene39253:CDS | 40.0% | |
CCTCATTTCTCTTCTCAAAG+TGG | + | chr1.1:42940137-42940156 | MS.gene39253:CDS | 40.0% | |
CTTCTCTTTGGATACCATCA+AGG | - | chr1.1:42936107-42936126 | None:intergenic | 40.0% | |
GAACATTGTTCAGTTTCTCC+AGG | - | chr1.1:42936398-42936417 | None:intergenic | 40.0% | |
GAGGGGTCACAAACATAATA+GGG | - | chr1.1:42938432-42938451 | None:intergenic | 40.0% | |
GCATTCCACATAGTAGCAAA+AGG | - | chr1.1:42938060-42938079 | None:intergenic | 40.0% | |
GGACCATCAAATGCAATTGA+GGG | + | chr1.1:42936552-42936571 | MS.gene39253:CDS | 40.0% | |
GTACTTTCCTCAACAGCATT+GGG | - | chr1.1:42937793-42937812 | None:intergenic | 40.0% | |
GTCAAACTAAAACCTTCTGG+TGG | - | chr1.1:42937928-42937947 | None:intergenic | 40.0% | |
GTGACAACTGGAAGAAAGTT+CGG | - | chr1.1:42938038-42938057 | None:intergenic | 40.0% | |
TAGTAGCAAAAGGTGACAAC+TGG | - | chr1.1:42938050-42938069 | None:intergenic | 40.0% | |
TCCCAAGAAATACATAGGTG+GGG | - | chr1.1:42939877-42939896 | None:intergenic | 40.0% | |
TCCCCACCTATGTATTTCTT+GGG | + | chr1.1:42939873-42939892 | MS.gene39253:intron | 40.0% | |
TCTTTGGATACCATCAAGGA+GGG | - | chr1.1:42936103-42936122 | None:intergenic | 40.0% | |
TGGACCATCAAATGCAATTG+AGG | + | chr1.1:42936551-42936570 | MS.gene39253:CDS | 40.0% | |
TTCAACAGAAGGATCATGAG+AGG | - | chr1.1:42937182-42937201 | None:intergenic | 40.0% | |
TTCCCCACCTATGTATTTCT+TGG | + | chr1.1:42939872-42939891 | MS.gene39253:intron | 40.0% | |
! | ATACTCTGGTTTATGGGACA+AGG | + | chr1.1:42938831-42938850 | MS.gene39253:intron | 40.0% |
! | CCACTTTGAGAAGAGAAATG+AGG | - | chr1.1:42940140-42940159 | None:intergenic | 40.0% |
! | GATTTCATTGAAGGAGCACA+AGG | + | chr1.1:42936269-42936288 | MS.gene39253:CDS | 40.0% |
! | GTTCTGAGTGGTTCACAAAT+AGG | + | chr1.1:42940062-42940081 | MS.gene39253:CDS | 40.0% |
! | TGGCAGTTTCTGTTTTATCC+TGG | - | chr1.1:42936503-42936522 | None:intergenic | 40.0% |
! | TGTCACCTTTTGCTACTATG+TGG | + | chr1.1:42938052-42938071 | MS.gene39253:CDS | 40.0% |
!! | AGGACCTAAGTTCTGAGAAA+TGG | + | chr1.1:42936784-42936803 | MS.gene39253:intron | 40.0% |
!! | GGAAGAGTATGACGTTTTGA+AGG | + | chr1.1:42940088-42940107 | MS.gene39253:CDS | 40.0% |
!! | TTATCTCATACATGACGGAC+AGG | + | chr1.1:42939137-42939156 | MS.gene39253:CDS | 40.0% |
!! | TTTCTTTTAGGTACGCTTGC+TGG | + | chr1.1:42939009-42939028 | MS.gene39253:intron | 40.0% |
!!! | GGCTCTTCATTTTTTTGGAG+AGG | - | chr1.1:42938451-42938470 | None:intergenic | 40.0% |
AACTCAGTCGCTCTGTTACT+TGG | + | chr1.1:42937437-42937456 | MS.gene39253:CDS | 45.0% | |
AAGCAACTGCTTCTGATGCT+TGG | - | chr1.1:42937621-42937640 | None:intergenic | 45.0% | |
ATGGGGCAGCTAAGTTATGT+GGG | - | chr1.1:42939512-42939531 | None:intergenic | 45.0% | |
CAACCTTATCTTGCCTTTGC+AGG | - | chr1.1:42938765-42938784 | None:intergenic | 45.0% | |
CAGAATGAAACAGTGGCAAG+TGG | + | chr1.1:42939066-42939085 | MS.gene39253:CDS | 45.0% | |
CATGGTGCAGCTAAGTTATG+TGG | - | chr1.1:42939665-42939684 | None:intergenic | 45.0% | |
CCAAACCAACACCAGAACAA+TGG | - | chr1.1:42940034-42940053 | None:intergenic | 45.0% | |
CCATATCGGAGAAGCCAAAA+AGG | + | chr1.1:42937026-42937045 | MS.gene39253:CDS | 45.0% | |
CGATACTGCACAAGATGCAT+TGG | - | chr1.1:42937740-42937759 | None:intergenic | 45.0% | |
CTCTTTGGATACCATCAAGG+AGG | - | chr1.1:42936104-42936123 | None:intergenic | 45.0% | |
CTGAAATGGCCAAAGAAACC+TGG | + | chr1.1:42937853-42937872 | MS.gene39253:CDS | 45.0% | |
CTGCAAAGGCAAGATAAGGT+TGG | + | chr1.1:42938763-42938782 | MS.gene39253:intron | 45.0% | |
CTTCCTGCAAAGGCAAGATA+AGG | + | chr1.1:42938759-42938778 | MS.gene39253:intron | 45.0% | |
GAGTGGTTCACAAATAGGCA+AGG | + | chr1.1:42940067-42940086 | MS.gene39253:CDS | 45.0% | |
GCTAACCATTGTTCTGGTGT+TGG | + | chr1.1:42940026-42940045 | MS.gene39253:intron | 45.0% | |
GCTATTGACCCATACCACAT+TGG | + | chr1.1:42938788-42938807 | MS.gene39253:intron | 45.0% | |
GCTGTTAATTACACAACCGG+AGG | - | chr1.1:42936328-42936347 | None:intergenic | 45.0% | |
TAAGGCTGTCTGTTGCAGTT+AGG | + | chr1.1:42938900-42938919 | MS.gene39253:intron | 45.0% | |
TCGGAAACTCCAGGTTTCTT+TGG | - | chr1.1:42937865-42937884 | None:intergenic | 45.0% | |
TTGGGGCAAACAGATACAAC+TGG | + | chr1.1:42936980-42936999 | MS.gene39253:CDS | 45.0% | |
! | ACTCAGTCGCTCTGTTACTT+GGG | + | chr1.1:42937438-42937457 | MS.gene39253:CDS | 45.0% |
! | AGGGATCAAGCGTTTTTGTC+AGG | - | chr1.1:42939567-42939586 | None:intergenic | 45.0% |
! | AGGTCCATCGCTAATTTGTG+TGG | + | chr1.1:42936189-42936208 | MS.gene39253:CDS | 45.0% |
! | CTGGAATTTGCTTCCTGCAA+AGG | + | chr1.1:42938749-42938768 | MS.gene39253:intron | 45.0% |
! | GCTGGATACAATGTCGTTTG+TGG | + | chr1.1:42939027-42939046 | MS.gene39253:CDS | 45.0% |
! | GGTCCATCGCTAATTTGTGT+GGG | + | chr1.1:42936190-42936209 | MS.gene39253:CDS | 45.0% |
! | TGTGGAATGCCTTCTTTTCG+TGG | + | chr1.1:42938070-42938089 | MS.gene39253:CDS | 45.0% |
! | TGTTTGACTCTGAAGACACG+TGG | + | chr1.1:42937893-42937912 | MS.gene39253:CDS | 45.0% |
! | TTTGGCTTCTCCGATATGGA+TGG | - | chr1.1:42937025-42937044 | None:intergenic | 45.0% |
!! | AGAGGTGTCTTTGGAACAGT+GGG | + | chr1.1:42936527-42936546 | MS.gene39253:CDS | 45.0% |
!! | CAAACAGCTGGTCTTCTCTT+TGG | - | chr1.1:42936119-42936138 | None:intergenic | 45.0% |
!! | CCATTGTTCTGGTGTTGGTT+TGG | + | chr1.1:42940031-42940050 | MS.gene39253:intron | 45.0% |
!! | GAGGTGCAATGTTTTAGACC+TGG | + | chr1.1:42936377-42936396 | MS.gene39253:CDS | 45.0% |
!! | GATCAGTTGGCAAAGCATTG+TGG | - | chr1.1:42936227-42936246 | None:intergenic | 45.0% |
!! | TGCTGTTGAGGAAAGTACTG+TGG | + | chr1.1:42937795-42937814 | MS.gene39253:CDS | 45.0% |
!!! | ATATGGGCACTTGTTTTGGG+TGG | + | chr1.1:42939906-42939925 | MS.gene39253:intron | 45.0% |
!!! | CCTTTTTGGCTTCTCCGATA+TGG | - | chr1.1:42937029-42937048 | None:intergenic | 45.0% |
AACAGAAACTGCCACTGCAG+AGG | + | chr1.1:42936509-42936528 | MS.gene39253:CDS | 50.0% | |
ACATCCTCCCAATGCTGTTG+AGG | + | chr1.1:42937783-42937802 | MS.gene39253:CDS | 50.0% | |
ATCCGATATCTACCCTTCCG+AGG | - | chr1.1:42936252-42936271 | None:intergenic | 50.0% | |
CACAATCGGCAGTGGGAAAA+TGG | - | chr1.1:42936839-42936858 | None:intergenic | 50.0% | |
CATGGGGCAGCTAAGTTATG+TGG | - | chr1.1:42939513-42939532 | None:intergenic | 50.0% | |
CATTGCACCTCTCATCTTGC+AGG | - | chr1.1:42936368-42936387 | None:intergenic | 50.0% | |
CTGAGCTCTTCAACAACAGC+AGG | - | chr1.1:42938258-42938277 | None:intergenic | 50.0% | |
CTGCTGTTGTTGAAGAGCTC+AGG | + | chr1.1:42938256-42938275 | MS.gene39253:CDS | 50.0% | |
CTTTGCCAACTGATCGTCCT+CGG | + | chr1.1:42936232-42936251 | MS.gene39253:CDS | 50.0% | |
GCATCAGAAGCAGTTGCTTC+TGG | + | chr1.1:42937622-42937641 | MS.gene39253:CDS | 50.0% | |
GTCCTCGGAAGGGTAGATAT+CGG | + | chr1.1:42936247-42936266 | MS.gene39253:CDS | 50.0% | |
TCGGAGAAGCCAAAAAGGGT+TGG | + | chr1.1:42937031-42937050 | MS.gene39253:CDS | 50.0% | |
TGCACAATGTTGGCGAGTTC+TGG | + | chr1.1:42938730-42938749 | MS.gene39253:intron | 50.0% | |
TGCTTCTGATGCTTGGCTCA+AGG | - | chr1.1:42937614-42937633 | None:intergenic | 50.0% | |
TGGGGCAGCTAAGTTATGTG+GGG | - | chr1.1:42939511-42939530 | None:intergenic | 50.0% | |
TGGTTTGATGCTCCACCAGA+AGG | + | chr1.1:42937913-42937932 | MS.gene39253:CDS | 50.0% | |
TTCCAAAGACACCTCTGCAG+TGG | - | chr1.1:42936523-42936542 | None:intergenic | 50.0% | |
TTGCAATTGGCCCTCCTTGA+TGG | + | chr1.1:42936090-42936109 | MS.gene39253:CDS | 50.0% | |
! | AAATGAGGTGCTCGACCAAG+TGG | - | chr1.1:42940125-42940144 | None:intergenic | 50.0% |
! | AGCAGTTGCTTCTGGAGACT+CGG | + | chr1.1:42937630-42937649 | MS.gene39253:CDS | 50.0% |
! | CAGGAGGGACTTGTTTCTCA+AGG | + | chr1.1:42939156-42939175 | MS.gene39253:CDS | 50.0% |
! | CTTTCCTCAACAGCATTGGG+AGG | - | chr1.1:42937790-42937809 | None:intergenic | 50.0% |
! | GGGTTGGCAATAAAGTGGTC+AGG | + | chr1.1:42937047-42937066 | MS.gene39253:CDS | 50.0% |
! | TCAACAGCATTGGGAGGATG+TGG | - | chr1.1:42937784-42937803 | None:intergenic | 50.0% |
! | TCTTGTGCAGTATCGGAAGC+AGG | + | chr1.1:42937745-42937764 | MS.gene39253:intron | 50.0% |
!! | CAGAGGTGTCTTTGGAACAG+TGG | + | chr1.1:42936526-42936545 | MS.gene39253:CDS | 50.0% |
!! | CGACTTGCCACGATTAGCTT+TGG | - | chr1.1:42936873-42936892 | None:intergenic | 50.0% |
!! | CTCATACATGACGGACAGGA+GGG | + | chr1.1:42939141-42939160 | MS.gene39253:CDS | 50.0% |
!! | GGCAAAGCATTGTGGCACAA+TGG | - | chr1.1:42936219-42936238 | None:intergenic | 50.0% |
!! | TCTCATACATGACGGACAGG+AGG | + | chr1.1:42939140-42939159 | MS.gene39253:CDS | 50.0% |
!! | TGGTGTTGGTTTGGTGAAGC+AGG | + | chr1.1:42940040-42940059 | MS.gene39253:intron | 50.0% |
!! | TTGGTGAAGCAGGTTCTGAG+TGG | + | chr1.1:42940050-42940069 | MS.gene39253:intron | 50.0% |
CAGATCCAGCTGCAAACAGC+TGG | - | chr1.1:42936131-42936150 | None:intergenic | 55.0% | |
CCAACTGATCGTCCTCGGAA+GGG | + | chr1.1:42936237-42936256 | MS.gene39253:CDS | 55.0% | |
GAAGACCAGCTGTTTGCAGC+TGG | + | chr1.1:42936123-42936142 | MS.gene39253:CDS | 55.0% | |
GACTCGGATCCCAATGATGC+TGG | + | chr1.1:42937646-42937665 | MS.gene39253:CDS | 55.0% | |
GCAGGGTCCAAAGCTAATCG+TGG | + | chr1.1:42936863-42936882 | MS.gene39253:intron | 55.0% | |
TGCAACGCACAATCGGCAGT+GGG | - | chr1.1:42936846-42936865 | None:intergenic | 55.0% | |
TGGACCCTGCAACGCACAAT+CGG | - | chr1.1:42936853-42936872 | None:intergenic | 55.0% | |
! | ACTGCCGATTGTGCGTTGCA+GGG | + | chr1.1:42936846-42936865 | MS.gene39253:intron | 55.0% |
!! | GTGTCTTTGGAACAGTGGGC+TGG | + | chr1.1:42936531-42936550 | MS.gene39253:CDS | 55.0% |
!! | TGCCACTGCAGAGGTGTCTT+TGG | + | chr1.1:42936518-42936537 | MS.gene39253:CDS | 55.0% |
CCCTTCCGAGGACGATCAGT+TGG | - | chr1.1:42936240-42936259 | None:intergenic | 60.0% | |
CTGCAACGCACAATCGGCAG+TGG | - | chr1.1:42936847-42936866 | None:intergenic | 60.0% | |
CTGGGAGCCTGCAAGATGAG+AGG | + | chr1.1:42936358-42936377 | MS.gene39253:CDS | 60.0% | |
GCCAACTGATCGTCCTCGGA+AGG | + | chr1.1:42936236-42936255 | MS.gene39253:CDS | 60.0% | |
! | CACTGCCGATTGTGCGTTGC+AGG | + | chr1.1:42936845-42936864 | MS.gene39253:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 42935985 | 42940166 | 42935985 | ID=MS.gene39253 |
chr1.1 | mRNA | 42935985 | 42940166 | 42935985 | ID=MS.gene39253.t1;Parent=MS.gene39253 |
chr1.1 | exon | 42935985 | 42936633 | 42935985 | ID=MS.gene39253.t1.exon1;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42935985 | 42936633 | 42935985 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
chr1.1 | exon | 42936867 | 42937667 | 42936867 | ID=MS.gene39253.t1.exon2;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42936867 | 42937667 | 42936867 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
chr1.1 | exon | 42937755 | 42937948 | 42937755 | ID=MS.gene39253.t1.exon3;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42937755 | 42937948 | 42937755 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
chr1.1 | exon | 42938051 | 42938314 | 42938051 | ID=MS.gene39253.t1.exon4;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42938051 | 42938314 | 42938051 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
chr1.1 | exon | 42939019 | 42939177 | 42939019 | ID=MS.gene39253.t1.exon5;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42939019 | 42939177 | 42939019 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
chr1.1 | exon | 42940062 | 42940166 | 42940062 | ID=MS.gene39253.t1.exon6;Parent=MS.gene39253.t1 |
chr1.1 | CDS | 42940062 | 42940166 | 42940062 | ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1 |
Gene Sequence |
Protein sequence |