AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39253


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39253.t1 MTR_1g055080 93.608 704 42 2 21 723 1 702 0.0 1340
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39253.t1 AT5G26760 49.138 348 164 5 381 723 91 430 3.57e-105 328
MS.gene39253.t1 AT5G26760 48.945 237 101 4 20 253 1 220 6.22e-59 213

Find 130 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTGCAGTGAAAGAATT+TGG 0.146405 1.1:+42937496 MS.gene39253:CDS
TTGGAACCAATGGAAAATTT+TGG 0.149339 1.1:+42936441 MS.gene39253:CDS
TCTTCTTTGGCATATATATA+TGG 0.189186 1.1:+42938102 MS.gene39253:CDS
GAAGAATTTCTATCAGTTAA+TGG 0.239586 1.1:+42938144 MS.gene39253:CDS
AACATTGGCAGAATTTAAAT+TGG 0.247143 1.1:-42937332 None:intergenic
GAATCATTGTCTCTTTGTTT+TGG 0.252817 1.1:-42936582 None:intergenic
AACAATGTTCTTAGGTTGTT+TGG 0.256285 1.1:+42936408 MS.gene39253:CDS
AATGATTATAAAAGTTTAAT+TGG 0.257744 1.1:+42936893 MS.gene39253:CDS
CCATATCGGAGAAGCCAAAA+AGG 0.270922 1.1:+42937026 MS.gene39253:CDS
GCATCAGAAGCAGTTGCTTC+TGG 0.271175 1.1:+42937622 MS.gene39253:CDS
GTGGATAACATCATCTTCTT+TGG 0.277954 1.1:+42938089 MS.gene39253:CDS
CAAACAGCTGGTCTTCTCTT+TGG 0.278459 1.1:-42936116 None:intergenic
TCGGAAACTCCAGGTTTCTT+TGG 0.282638 1.1:-42937862 None:intergenic
AGAATTTGGAAACATTAAAA+AGG 0.285942 1.1:+42937510 MS.gene39253:CDS
TTAGATTTAAGAGAAGATTT+TGG 0.295505 1.1:-42937403 None:intergenic
AGAAACTGAACAATGTTCTT+AGG 0.303436 1.1:+42936400 MS.gene39253:CDS
TGCCACTGCAGAGGTGTCTT+TGG 0.317308 1.1:+42936518 MS.gene39253:CDS
AAGAATTTCTATCAGTTAAT+GGG 0.321763 1.1:+42938145 MS.gene39253:CDS
GATGAGAAAATCAACAGTTC+TGG 0.329888 1.1:+42937463 MS.gene39253:CDS
AACTCAGTCGCTCTGTTACT+TGG 0.346040 1.1:+42937437 MS.gene39253:CDS
ACAAAGAGACAATGATTCTA+AGG 0.351983 1.1:+42936587 MS.gene39253:CDS
TTGCAATTGGCCCTCCTTGA+TGG 0.353204 1.1:+42936090 MS.gene39253:CDS
TAACCCTCAATTGCATTTGA+TGG 0.359086 1.1:-42936555 None:intergenic
GTTCTGAGTGGTTCACAAAT+AGG 0.360354 1.1:+42940062 MS.gene39253:CDS
GAAATAAAACAAACATTAGT+TGG 0.365903 1.1:+42938213 MS.gene39253:CDS
CATTGCACCTCTCATCTTGC+AGG 0.368177 1.1:-42936365 None:intergenic
CGACTTGCCACGATTAGCTT+TGG 0.375326 1.1:-42936870 None:intergenic
ATCACATTCTCTTTCTGAAA+TGG 0.377271 1.1:-42937224 None:intergenic
ACATCAATTACCAGCATCAT+TGG 0.377762 1.1:-42937656 None:intergenic
ACAGTCAAACTAAAACCTTC+TGG 0.396644 1.1:-42937928 None:intergenic
CTTCTTTGGCATATATATAT+GGG 0.399659 1.1:+42938103 MS.gene39253:CDS
AAAATTCAGTTACTCTGAAA+TGG 0.402967 1.1:+42937839 MS.gene39253:CDS
AGAGTCAAACAAATCAAATT+CGG 0.409918 1.1:-42937881 None:intergenic
TTCTAGAAACTTGCTTCTGA+TGG 0.413119 1.1:+42936026 MS.gene39253:CDS
CACTGTTTCATTCTGAATGC+TGG 0.415973 1.1:-42939058 None:intergenic
CTGCTGTTGTTGAAGAGCTC+AGG 0.417817 1.1:+42938256 MS.gene39253:CDS
CGCTTGCTCTAATATATCTA+CGG 0.420079 1.1:-42938289 None:intergenic
TCTAATATATCTACGGGTAT+TGG 0.431896 1.1:-42938282 None:intergenic
TAGTGTTTCGAAAGTATCAT+TGG 0.437175 1.1:+42936961 MS.gene39253:CDS
TTTGCTGTTAATTACACAAC+CGG 0.450833 1.1:-42936328 None:intergenic
ATGAGAAAATCAACAGTTCT+GGG 0.455398 1.1:+42937464 MS.gene39253:CDS
AGTGTTTCGAAAGTATCATT+GGG 0.455834 1.1:+42936962 MS.gene39253:CDS
CTGAAATGGCCAAAGAAACC+TGG 0.462966 1.1:+42937853 MS.gene39253:CDS
TAGATATCGGATTTCATTGA+AGG 0.467664 1.1:+42936260 MS.gene39253:CDS
GAAGACCAGCTGTTTGCAGC+TGG 0.470370 1.1:+42936123 MS.gene39253:CDS
AATTAAGCTGCCATCCATAT+CGG 0.473407 1.1:+42937012 MS.gene39253:CDS
AGTACTTTCCTCAACAGCAT+TGG 0.477464 1.1:-42937791 None:intergenic
AAGCAACTGCTTCTGATGCT+TGG 0.479108 1.1:-42937618 None:intergenic
AAATTTGAACTTGGAACCAA+TGG 0.481401 1.1:+42936431 MS.gene39253:CDS
GTACTTTCCTCAACAGCATT+GGG 0.483000 1.1:-42937790 None:intergenic
GAACATTGTTCAGTTTCTCC+AGG 0.487506 1.1:-42936395 None:intergenic
TAGGAATTTCTCTTCAACAT+TGG 0.487770 1.1:-42937347 None:intergenic
ACTCAGTCGCTCTGTTACTT+GGG 0.488356 1.1:+42937438 MS.gene39253:CDS
GGCAGAATTTAAATTGGAAG+TGG 0.495798 1.1:-42937326 None:intergenic
GCTGGATACAATGTCGTTTG+TGG 0.496169 1.1:+42939027 MS.gene39253:CDS
CTTCTCTTTGGATACCATCA+AGG 0.498483 1.1:-42936104 None:intergenic
TGGACCATCAAATGCAATTG+AGG 0.498530 1.1:+42936551 MS.gene39253:CDS
CATCAATTACCAGCATCATT+GGG 0.503869 1.1:-42937655 None:intergenic
GTGTCTTTGGAACAGTGGGC+TGG 0.514994 1.1:+42936531 MS.gene39253:CDS
TGATGTTATCCACGAAAAGA+AGG 0.516826 1.1:-42938079 None:intergenic
CAGATCCAGCTGCAAACAGC+TGG 0.520179 1.1:-42936128 None:intergenic
GGGTTGGCAATAAAGTGGTC+AGG 0.521721 1.1:+42937047 MS.gene39253:CDS
TTGGGGCAAACAGATACAAC+TGG 0.522191 1.1:+42936980 MS.gene39253:CDS
AAGGATTTCGTTGTACCACT+TGG 0.526604 1.1:+42940107 MS.gene39253:CDS
GACTCGGATCCCAATGATGC+TGG 0.527843 1.1:+42937646 MS.gene39253:CDS
AGAGGTGTCTTTGGAACAGT+GGG 0.528299 1.1:+42936527 MS.gene39253:CDS
AGCAGTTGCTTCTGGAGACT+CGG 0.529316 1.1:+42937630 MS.gene39253:CDS
GTCCTCGGAAGGGTAGATAT+CGG 0.529838 1.1:+42936247 MS.gene39253:CDS
GCTTGCTCTAATATATCTAC+GGG 0.532496 1.1:-42938288 None:intergenic
CCTCATTTCTCTTCTCAAAG+TGG 0.532595 1.1:+42940137 MS.gene39253:CDS
ACATCCTCCCAATGCTGTTG+AGG 0.537391 1.1:+42937783 MS.gene39253:CDS
AAATCAAATTCGGAAACTCC+AGG 0.537463 1.1:-42937871 None:intergenic
GCATTCCACATAGTAGCAAA+AGG 0.537790 1.1:-42938057 None:intergenic
CTTTGCCAACTGATCGTCCT+CGG 0.538022 1.1:+42936232 MS.gene39253:CDS
TGCTTCTGATGCTTGGCTCA+AGG 0.539836 1.1:-42937611 None:intergenic
GTTGTTTGGAAATTTGAACT+TGG 0.540609 1.1:+42936422 MS.gene39253:CDS
TCAACAGCATTGGGAGGATG+TGG 0.540662 1.1:-42937781 None:intergenic
GCCAACTGATCGTCCTCGGA+AGG 0.542811 1.1:+42936236 MS.gene39253:CDS
AGCAAAATTGTCTTGACAGA+TGG 0.547346 1.1:+42938180 MS.gene39253:CDS
AAGTTTCTAGAAATAGCATA+AGG 0.550886 1.1:-42936015 None:intergenic
CTGAGCTCTTCAACAACAGC+AGG 0.551817 1.1:-42938255 None:intergenic
CCCTTCCGAGGACGATCAGT+TGG 0.553458 1.1:-42936237 None:intergenic
TCTTGTGCAGTATCGGAAGC+AGG 0.557558 1.1:+42937745 MS.gene39253:intron
GGACCATCAAATGCAATTGA+GGG 0.558886 1.1:+42936552 MS.gene39253:CDS
AAATCTTCTCTTAAATCTAA+CGG 0.559728 1.1:+42937406 MS.gene39253:CDS
TTTGGCTTCTCCGATATGGA+TGG 0.560592 1.1:-42937022 None:intergenic
ATGAAGATGTTGTAACTGAA+AGG 0.563773 1.1:+42936169 MS.gene39253:CDS
TGGTTTGATGCTCCACCAGA+AGG 0.577882 1.1:+42937913 MS.gene39253:CDS
CAGGAGGGACTTGTTTCTCA+AGG 0.580423 1.1:+42939156 MS.gene39253:CDS
TTATCTCATACATGACGGAC+AGG 0.585032 1.1:+42939137 MS.gene39253:CDS
AGGTCCATCGCTAATTTGTG+TGG 0.588401 1.1:+42936189 MS.gene39253:CDS
TTCAACAGAAGGATCATGAG+AGG 0.591346 1.1:-42937179 None:intergenic
GATCAGTTGGCAAAGCATTG+TGG 0.591887 1.1:-42936224 None:intergenic
CTTTGGCATATATATATGGG+AGG 0.592014 1.1:+42938106 MS.gene39253:CDS
CAGAGGTGTCTTTGGAACAG+TGG 0.592215 1.1:+42936526 MS.gene39253:CDS
CAGAACAGAATGATTCTGAA+AGG 0.593966 1.1:+42937248 MS.gene39253:CDS
CTCATACATGACGGACAGGA+GGG 0.594470 1.1:+42939141 MS.gene39253:CDS
AAGTACCTCAACAAAAGAGA+AGG 0.595618 1.1:+42937123 MS.gene39253:CDS
AAAACATGTAAGTTTCGTGT+AGG 0.601008 1.1:-42936299 None:intergenic
GAAATCGATACAACTCAAAG+AGG 0.607557 1.1:+42937270 MS.gene39253:CDS
TTCCAAAGACACCTCTGCAG+TGG 0.615979 1.1:-42936520 None:intergenic
TTTGGCATATATATATGGGA+GGG 0.616710 1.1:+42938107 MS.gene39253:CDS
GATTTCATTGAAGGAGCACA+AGG 0.625957 1.1:+42936269 MS.gene39253:CDS
GTCAAACTAAAACCTTCTGG+TGG 0.626841 1.1:-42937925 None:intergenic
TCTCATACATGACGGACAGG+AGG 0.627733 1.1:+42939140 MS.gene39253:CDS
TACTCTTATCTCATACATGA+CGG 0.628188 1.1:+42939132 MS.gene39253:CDS
GGCAAAGCATTGTGGCACAA+TGG 0.628386 1.1:-42936216 None:intergenic
CTGGGAGCCTGCAAGATGAG+AGG 0.628600 1.1:+42936358 MS.gene39253:CDS
AACAGAAACTGCCACTGCAG+AGG 0.631088 1.1:+42936509 MS.gene39253:CDS
CAGAATGAAACAGTGGCAAG+TGG 0.634857 1.1:+42939066 MS.gene39253:CDS
CCACTTTGAGAAGAGAAATG+AGG 0.636699 1.1:-42940137 None:intergenic
GAGTGGTTCACAAATAGGCA+AGG 0.636728 1.1:+42940067 MS.gene39253:CDS
CTCTTTGGATACCATCAAGG+AGG 0.637806 1.1:-42936101 None:intergenic
TTTCTGAAATGGTAATCGAG+TGG 0.640137 1.1:-42937213 None:intergenic
CCAACTGATCGTCCTCGGAA+GGG 0.642742 1.1:+42936237 MS.gene39253:CDS
GGTCCATCGCTAATTTGTGT+GGG 0.648300 1.1:+42936190 MS.gene39253:CDS
ATACCCACACAAATTAGCGA+TGG 0.649576 1.1:-42936193 None:intergenic
CTTTCCTCAACAGCATTGGG+AGG 0.652955 1.1:-42937787 None:intergenic
TCTTTGGATACCATCAAGGA+GGG 0.655363 1.1:-42936100 None:intergenic
GTCATGTATGAGATAAGAGT+AGG 0.656182 1.1:-42939130 None:intergenic
AAATGAGGTGCTCGACCAAG+TGG 0.656919 1.1:-42940122 None:intergenic
AGATATATTAGAGCAAGCGA+TGG 0.661113 1.1:+42938293 MS.gene39253:CDS
TGTTTGACTCTGAAGACACG+TGG 0.666494 1.1:+42937893 MS.gene39253:CDS
ATCCGATATCTACCCTTCCG+AGG 0.667151 1.1:-42936249 None:intergenic
TTGGTGAAGCAGGTTCTGAG+TGG 0.679031 1.1:+42940050 MS.gene39253:intron
GTGTTTCGAAAGTATCATTG+GGG 0.679627 1.1:+42936963 MS.gene39253:CDS
GCTGTTAATTACACAACCGG+AGG 0.683543 1.1:-42936325 None:intergenic
GCAGGGTCCAAAGCTAATCG+TGG 0.689841 1.1:+42936863 MS.gene39253:intron
CAGCATTCAGAATGAAACAG+TGG 0.697410 1.1:+42939059 MS.gene39253:CDS
TGCTGTTGAGGAAAGTACTG+TGG 0.706731 1.1:+42937795 MS.gene39253:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTATAAAAGTTTAAT+TGG + chr1.1:42936893-42936912 MS.gene39253:CDS 10.0%
!!! TATTATTTTACTCTATAATT+TGG + chr1.1:42939691-42939710 MS.gene39253:intron 10.0%
!! AAAACTGAAAATAATAAGAT+AGG - chr1.1:42939959-42939978 None:intergenic 15.0%
!! AGGATTTCAAAAAATTATAT+TGG - chr1.1:42936655-42936674 None:intergenic 15.0%
!! ATTAAATATTTATTACACTC+TGG + chr1.1:42938363-42938382 MS.gene39253:intron 15.0%
!! TACTAGCAAATAAAATAATA+AGG - chr1.1:42939420-42939439 None:intergenic 15.0%
!!! AAACATTATAAATTTTCGAA+TGG + chr1.1:42938697-42938716 MS.gene39253:intron 15.0%
!!! TATTTTATTTGCTAGTATTT+TGG + chr1.1:42939423-42939442 MS.gene39253:intron 15.0%
!!! TTTCTAAATTTTGAAAAAGA+AGG - chr1.1:42938860-42938879 None:intergenic 15.0%
!! AAATCTTCTCTTAAATCTAA+CGG + chr1.1:42937406-42937425 MS.gene39253:CDS 20.0%
!! AAGAATTTCTATCAGTTAAT+GGG + chr1.1:42938145-42938164 MS.gene39253:CDS 20.0%
!! AATAAGGATTAAATGTTTGT+CGG - chr1.1:42939404-42939423 None:intergenic 20.0%
!! ACACTAACAAATGTAATAAT+AGG - chr1.1:42939587-42939606 None:intergenic 20.0%
!! AGAAATTTCCAAAAAATCAT+GGG + chr1.1:42938875-42938894 MS.gene39253:intron 20.0%
!! AGAATTTGGAAACATTAAAA+AGG + chr1.1:42937510-42937529 MS.gene39253:CDS 20.0%
!! AGTAAAATAATATCTAAGCA+TGG - chr1.1:42939683-42939702 None:intergenic 20.0%
!! ATACTATAATTGTAAAGTTG+AGG + chr1.1:42936764-42936783 MS.gene39253:intron 20.0%
!! ATCAGAACAATATAAACAAA+AGG - chr1.1:42939187-42939206 None:intergenic 20.0%
!! ATCAGAACAATATAAACATA+CGG - chr1.1:42939292-42939311 None:intergenic 20.0%
!! CAATTACAATTTACAACTAT+TGG - chr1.1:42939735-42939754 None:intergenic 20.0%
!! CACTAACAAATGTAATAATA+GGG - chr1.1:42939586-42939605 None:intergenic 20.0%
!! GAAATAAAACAAACATTAGT+TGG + chr1.1:42938213-42938232 MS.gene39253:CDS 20.0%
!! TAGAAATTTCCAAAAAATCA+TGG + chr1.1:42938874-42938893 MS.gene39253:intron 20.0%
!! TCTAAGAAAAATGCTAAAAA+AGG + chr1.1:42936612-42936631 MS.gene39253:CDS 20.0%
!!! AAGCATTTTATAATGATATC+AGG + chr1.1:42939361-42939380 MS.gene39253:intron 20.0%
!!! ATAATTTGGTTTATCTAATG+TGG + chr1.1:42939705-42939724 MS.gene39253:intron 20.0%
!!! ATTCAATTGCTTTTTCAATT+AGG - chr1.1:42937369-42937388 None:intergenic 20.0%
!!! CATTTAGAATAAACAAACAA+AGG - chr1.1:42939474-42939493 None:intergenic 20.0%
!!! GCAAGTAAATTTTATTCATA+TGG - chr1.1:42939812-42939831 None:intergenic 20.0%
!!! GGATTTTATTTTGTTAAGTT+TGG - chr1.1:42939643-42939662 None:intergenic 20.0%
!!! TAAAGCATTGCTTTATTAAT+TGG + chr1.1:42938654-42938673 MS.gene39253:intron 20.0%
!!! TAATGACTTAGTTTAAAACA+AGG - chr1.1:42938347-42938366 None:intergenic 20.0%
!!! TATCCATTTTTGTTTATATG+AGG + chr1.1:42938968-42938987 MS.gene39253:intron 20.0%
!!! TATTACATTTGTTAGTGTTT+TGG + chr1.1:42939589-42939608 MS.gene39253:intron 20.0%
!!! TTAGATTTAAGAGAAGATTT+TGG - chr1.1:42937406-42937425 None:intergenic 20.0%
!!! TTTTATTTTGTTAAGTTTGG+AGG - chr1.1:42939640-42939659 None:intergenic 20.0%
! AACATTGGCAGAATTTAAAT+TGG - chr1.1:42937335-42937354 None:intergenic 25.0%
! AATATTTATTACACTCTGGT+AGG + chr1.1:42938367-42938386 MS.gene39253:intron 25.0%
! AGAGTCAAACAAATCAAATT+CGG - chr1.1:42937884-42937903 None:intergenic 25.0%
! ATAAGGATTAAATGTTTGTC+GGG - chr1.1:42939403-42939422 None:intergenic 25.0%
! ATGCTAAAATTGATGAAACT+TGG - chr1.1:42938585-42938604 None:intergenic 25.0%
! CATCCTCATATAAACAAAAA+TGG - chr1.1:42938974-42938993 None:intergenic 25.0%
! CTTCTTTGGCATATATATAT+GGG + chr1.1:42938103-42938122 MS.gene39253:CDS 25.0%
! GAAGAATTTCTATCAGTTAA+TGG + chr1.1:42938144-42938163 MS.gene39253:CDS 25.0%
! GAGTATAAGAAACAAAGAAA+TGG - chr1.1:42938817-42938836 None:intergenic 25.0%
! TCTTCTTTGGCATATATATA+TGG + chr1.1:42938102-42938121 MS.gene39253:CDS 25.0%
! TGTAAATTGTAATTGCTATG+CGG + chr1.1:42939740-42939759 MS.gene39253:intron 25.0%
!! AAAATTCAGTTACTCTGAAA+TGG + chr1.1:42937839-42937858 MS.gene39253:CDS 25.0%
!! AAGTTTCTAGAAATAGCATA+AGG - chr1.1:42936018-42936037 None:intergenic 25.0%
!! TTCTATCATTAAGAAAGCAT+GGG - chr1.1:42939530-42939549 None:intergenic 25.0%
!! TTTCTTATACTCTGGTTTAT+GGG + chr1.1:42938825-42938844 MS.gene39253:intron 25.0%
!! TTTCTTTGTTTCTTATACTC+TGG + chr1.1:42938817-42938836 MS.gene39253:intron 25.0%
!!! AAGCATTTGATAATGATATC+AGG + chr1.1:42939256-42939275 MS.gene39253:intron 25.0%
!!! CAATTTTAGCATATGTGAAA+AGG + chr1.1:42938593-42938612 MS.gene39253:intron 25.0%
!!! TTATTTTACCCACATTACTA+TGG + chr1.1:42939210-42939229 MS.gene39253:intron 25.0%
!!! TTTGATAATGATATCAGGTA+AGG + chr1.1:42939261-42939280 MS.gene39253:intron 25.0%
AAAACATGTAAGTTTCGTGT+AGG - chr1.1:42936302-42936321 None:intergenic 30.0%
AAATTTGAACTTGGAACCAA+TGG + chr1.1:42936431-42936450 MS.gene39253:CDS 30.0%
AATCAACAAAACTGTGGAAA+AGG + chr1.1:42938490-42938509 MS.gene39253:intron 30.0%
ACAAAGAGACAATGATTCTA+AGG + chr1.1:42936587-42936606 MS.gene39253:CDS 30.0%
AGAAACTGAACAATGTTCTT+AGG + chr1.1:42936400-42936419 MS.gene39253:CDS 30.0%
ATAAGGAATCAACAAAACTG+TGG + chr1.1:42938484-42938503 MS.gene39253:intron 30.0%
ATAAGGCTATCTAATAGTCT+AGG - chr1.1:42936675-42936694 None:intergenic 30.0%
ATCATTCCCAAGAAATACAT+AGG - chr1.1:42939882-42939901 None:intergenic 30.0%
ATGAAGATGTTGTAACTGAA+AGG + chr1.1:42936169-42936188 MS.gene39253:CDS 30.0%
ATGAGAAAATCAACAGTTCT+GGG + chr1.1:42937464-42937483 MS.gene39253:CDS 30.0%
CATGCTTTCTTAATGATAGA+AGG + chr1.1:42939529-42939548 MS.gene39253:intron 30.0%
CTTCTATCATTAAGAAAGCA+TGG - chr1.1:42939531-42939550 None:intergenic 30.0%
CTTGGGAATGATGTTAATAT+GGG + chr1.1:42939890-42939909 MS.gene39253:intron 30.0%
GAAATGATGTATGTAAACTG+AGG + chr1.1:42939928-42939947 MS.gene39253:intron 30.0%
GAATAAACAAACAAAGGTGA+AGG - chr1.1:42939468-42939487 None:intergenic 30.0%
GGTAATTGATGTTTCTTTAG+AGG + chr1.1:42937667-42937686 MS.gene39253:intron 30.0%
GTTGTTTGGAAATTTGAACT+TGG + chr1.1:42936422-42936441 MS.gene39253:CDS 30.0%
TACTCTTATCTCATACATGA+CGG + chr1.1:42939132-42939151 MS.gene39253:CDS 30.0%
TAGATATCGGATTTCATTGA+AGG + chr1.1:42936260-42936279 MS.gene39253:CDS 30.0%
TAGGAATTTCTCTTCAACAT+TGG - chr1.1:42937350-42937369 None:intergenic 30.0%
TATTCCATTTCTCAGAACTT+AGG - chr1.1:42936791-42936810 None:intergenic 30.0%
TCCAAAAAATCATGGGTTTA+AGG + chr1.1:42938882-42938901 MS.gene39253:intron 30.0%
TCTAATATATCTACGGGTAT+TGG - chr1.1:42938285-42938304 None:intergenic 30.0%
TCTTGGGAATGATGTTAATA+TGG + chr1.1:42939889-42939908 MS.gene39253:intron 30.0%
TTTGAGCAAAAAATGGCATA+AGG - chr1.1:42936692-42936711 None:intergenic 30.0%
TTTGGCATATATATATGGGA+GGG + chr1.1:42938107-42938126 MS.gene39253:CDS 30.0%
! AACAATGTTCTTAGGTTGTT+TGG + chr1.1:42936408-42936427 MS.gene39253:CDS 30.0%
! ACAACTTTCTTTTCAACAGA+AGG - chr1.1:42937193-42937212 None:intergenic 30.0%
! AGACACTTTTGAGCAAAAAA+TGG - chr1.1:42936699-42936718 None:intergenic 30.0%
! ATCACATTCTCTTTCTGAAA+TGG - chr1.1:42937227-42937246 None:intergenic 30.0%
! GTTTCTTATACTCTGGTTTA+TGG + chr1.1:42938824-42938843 MS.gene39253:intron 30.0%
! TAAGTGCACAACTTTCTTTT+AGG + chr1.1:42938997-42939016 MS.gene39253:intron 30.0%
! TATTTCCTTCTCTTTTGTTG+AGG - chr1.1:42937131-42937150 None:intergenic 30.0%
! TCCTTTCCAAAATTTTCCAT+TGG - chr1.1:42936450-42936469 None:intergenic 30.0%
! TCTATCATTAAGAAAGCATG+GGG - chr1.1:42939529-42939548 None:intergenic 30.0%
! TTGGAACCAATGGAAAATTT+TGG + chr1.1:42936441-42936460 MS.gene39253:CDS 30.0%
!! ACCAATGGAAAATTTTGGAA+AGG + chr1.1:42936446-42936465 MS.gene39253:CDS 30.0%
!! AGTGTTTCGAAAGTATCATT+GGG + chr1.1:42936962-42936981 MS.gene39253:CDS 30.0%
!! ATGGAAAATTTTGGAAAGGA+TGG + chr1.1:42936450-42936469 MS.gene39253:CDS 30.0%
!! GAATCATTGTCTCTTTGTTT+TGG - chr1.1:42936585-42936604 None:intergenic 30.0%
!! TAATTTGCTAACCATTGTTC+TGG + chr1.1:42940020-42940039 MS.gene39253:intron 30.0%
!! TAGTGTTTCGAAAGTATCAT+TGG + chr1.1:42936961-42936980 MS.gene39253:CDS 30.0%
!! TTAATATGGGCACTTGTTTT+GGG + chr1.1:42939903-42939922 MS.gene39253:intron 30.0%
!! TTTGCTGTTAATTACACAAC+CGG - chr1.1:42936331-42936350 None:intergenic 30.0%
!! TTTTTCTGACTTGAAAATCC+AGG + chr1.1:42936482-42936501 MS.gene39253:CDS 30.0%
!!! GAGAAGATTTTGGTTTAGTA+TGG - chr1.1:42937396-42937415 None:intergenic 30.0%
!!! GTATTCTTTGTTTTCCTGAT+GGG + chr1.1:42936731-42936750 MS.gene39253:intron 30.0%
!!! TGCTGTTTTGAAATTGCAAT+TGG + chr1.1:42936077-42936096 MS.gene39253:CDS 30.0%
!!! TGTATTCTTTGTTTTCCTGA+TGG + chr1.1:42936730-42936749 MS.gene39253:intron 30.0%
!!! TTCCTTATTTTGTGTATGAG+TGG - chr1.1:42938472-42938491 None:intergenic 30.0%
AAATCAAATTCGGAAACTCC+AGG - chr1.1:42937874-42937893 None:intergenic 35.0%
AAGTACCTCAACAAAAGAGA+AGG + chr1.1:42937123-42937142 MS.gene39253:CDS 35.0%
AATTAAGCTGCCATCCATAT+CGG + chr1.1:42937012-42937031 MS.gene39253:CDS 35.0%
ACAGTCAAACTAAAACCTTC+TGG - chr1.1:42937931-42937950 None:intergenic 35.0%
ACATCAATTACCAGCATCAT+TGG - chr1.1:42937659-42937678 None:intergenic 35.0%
AGATATATTAGAGCAAGCGA+TGG + chr1.1:42938293-42938312 MS.gene39253:CDS 35.0%
AGATTGCTACCATAGTAATG+TGG - chr1.1:42939222-42939241 None:intergenic 35.0%
AGCAAAATTGTCTTGACAGA+TGG + chr1.1:42938180-42938199 MS.gene39253:CDS 35.0%
AGCCACTCATACACAAAATA+AGG + chr1.1:42938467-42938486 MS.gene39253:intron 35.0%
ATTCCCAAGAAATACATAGG+TGG - chr1.1:42939879-42939898 None:intergenic 35.0%
CAACAAAGAGAATGTGCTAT+AGG - chr1.1:42938531-42938550 None:intergenic 35.0%
CAGAACAGAATGATTCTGAA+AGG + chr1.1:42937248-42937267 MS.gene39253:CDS 35.0%
CATCAATTACCAGCATCATT+GGG - chr1.1:42937658-42937677 None:intergenic 35.0%
CATCTTTGACAAAAACAAGC+TGG - chr1.1:42936059-42936078 None:intergenic 35.0%
CGCTTGCTCTAATATATCTA+CGG - chr1.1:42938292-42938311 None:intergenic 35.0%
CTATAGCACATTCTCTTTGT+TGG + chr1.1:42938529-42938548 MS.gene39253:intron 35.0%
CTTAATGATAGAAGGTTGCA+TGG + chr1.1:42939537-42939556 MS.gene39253:intron 35.0%
CTTTGGCATATATATATGGG+AGG + chr1.1:42938106-42938125 MS.gene39253:CDS 35.0%
CTTTGTGCAGTGAAAGAATT+TGG + chr1.1:42937496-42937515 MS.gene39253:CDS 35.0%
GAAATCGATACAACTCAAAG+AGG + chr1.1:42937270-42937289 MS.gene39253:CDS 35.0%
GATGAGAAAATCAACAGTTC+TGG + chr1.1:42937463-42937482 MS.gene39253:CDS 35.0%
GATTGCTACCATAGTAATGT+GGG - chr1.1:42939221-42939240 None:intergenic 35.0%
GCTTGCTCTAATATATCTAC+GGG - chr1.1:42938291-42938310 None:intergenic 35.0%
GGAAACATTAAAAAGGAGTC+TGG + chr1.1:42937517-42937536 MS.gene39253:CDS 35.0%
GGCAGAATTTAAATTGGAAG+TGG - chr1.1:42937329-42937348 None:intergenic 35.0%
GTATATTACAATCACCCATC+AGG - chr1.1:42936748-42936767 None:intergenic 35.0%
GTCATGTATGAGATAAGAGT+AGG - chr1.1:42939133-42939152 None:intergenic 35.0%
GTGGATAACATCATCTTCTT+TGG + chr1.1:42938089-42938108 MS.gene39253:CDS 35.0%
TAACCCTCAATTGCATTTGA+TGG - chr1.1:42936558-42936577 None:intergenic 35.0%
TAGCATATGTGAAAAGGAAC+TGG + chr1.1:42938599-42938618 MS.gene39253:intron 35.0%
TGATGTTATCCACGAAAAGA+AGG - chr1.1:42938082-42938101 None:intergenic 35.0%
TTCCCAAGAAATACATAGGT+GGG - chr1.1:42939878-42939897 None:intergenic 35.0%
TTTGTTAAGTTTGGAGGTGA+AGG - chr1.1:42939634-42939653 None:intergenic 35.0%
! AAAAAGGGTTGGCAATAAAG+TGG + chr1.1:42937042-42937061 MS.gene39253:CDS 35.0%
! ACTTTATTGCCAACCCTTTT+TGG - chr1.1:42937043-42937062 None:intergenic 35.0%
! ATTAACAGCAAAGCTTTTGC+TGG + chr1.1:42936339-42936358 MS.gene39253:CDS 35.0%
! GTTAATATGGGCACTTGTTT+TGG + chr1.1:42939902-42939921 MS.gene39253:intron 35.0%
! TCTGTCAAGACAATTTTGCT+AGG - chr1.1:42938180-42938199 None:intergenic 35.0%
! TGAAAAGGAACTGGTTTAGA+TGG + chr1.1:42938608-42938627 MS.gene39253:intron 35.0%
! TGACTAGTTATGCACAATGT+TGG + chr1.1:42938720-42938739 MS.gene39253:intron 35.0%
! TTAACAGCAAAGCTTTTGCT+GGG + chr1.1:42936340-42936359 MS.gene39253:CDS 35.0%
! TTCTAGAAACTTGCTTCTGA+TGG + chr1.1:42936026-42936045 MS.gene39253:CDS 35.0%
!! ACTTACATGTTTTGTTCCTC+CGG + chr1.1:42936309-42936328 MS.gene39253:CDS 35.0%
!! GTGTTTCGAAAGTATCATTG+GGG + chr1.1:42936963-42936982 MS.gene39253:CDS 35.0%
!! TTTCTGAAATGGTAATCGAG+TGG - chr1.1:42937216-42937235 None:intergenic 35.0%
!!! CTCTTCATTTTTTTGGAGAG+GGG - chr1.1:42938449-42938468 None:intergenic 35.0%
!!! GCCTTAAACCCATGATTTTT+TGG - chr1.1:42938886-42938905 None:intergenic 35.0%
!!! GCGGATTTTTAGTTAAAGTG+AGG + chr1.1:42939759-42939778 MS.gene39253:intron 35.0%
!!! GCTCTTCATTTTTTTGGAGA+GGG - chr1.1:42938450-42938469 None:intergenic 35.0%
!!! TGAGTGGCTCTTCATTTTTT+TGG - chr1.1:42938456-42938475 None:intergenic 35.0%
AAATACATAGGTGGGGAAAG+TGG - chr1.1:42939870-42939889 None:intergenic 40.0%
AAATGGTTGCCAATGTGGTA+TGG - chr1.1:42938800-42938819 None:intergenic 40.0%
AAGGATTTCGTTGTACCACT+TGG + chr1.1:42940107-42940126 MS.gene39253:CDS 40.0%
AATGGTTGCCAATGTGGTAT+GGG - chr1.1:42938799-42938818 None:intergenic 40.0%
AGAGGGGTCACAAACATAAT+AGG - chr1.1:42938433-42938452 None:intergenic 40.0%
AGTACTTTCCTCAACAGCAT+TGG - chr1.1:42937794-42937813 None:intergenic 40.0%
ATACCCACACAAATTAGCGA+TGG - chr1.1:42936196-42936215 None:intergenic 40.0%
ATGGTGCAGCTAAGTTATGT+GGG - chr1.1:42939664-42939683 None:intergenic 40.0%
CAAAGAAATGGTTGCCAATG+TGG - chr1.1:42938805-42938824 None:intergenic 40.0%
CAATGCATCTTGTGCAGTAT+CGG + chr1.1:42937738-42937757 MS.gene39253:intron 40.0%
CACTGTTTCATTCTGAATGC+TGG - chr1.1:42939061-42939080 None:intergenic 40.0%
CAGCATTCAGAATGAAACAG+TGG + chr1.1:42939059-42939078 MS.gene39253:CDS 40.0%
CATATCGGAGAAGCCAAAAA+GGG + chr1.1:42937027-42937046 MS.gene39253:CDS 40.0%
CATTAAAAAGGAGTCTGGTG+TGG + chr1.1:42937522-42937541 MS.gene39253:CDS 40.0%
CCTCATTTCTCTTCTCAAAG+TGG + chr1.1:42940137-42940156 MS.gene39253:CDS 40.0%
CTTCTCTTTGGATACCATCA+AGG - chr1.1:42936107-42936126 None:intergenic 40.0%
GAACATTGTTCAGTTTCTCC+AGG - chr1.1:42936398-42936417 None:intergenic 40.0%
GAGGGGTCACAAACATAATA+GGG - chr1.1:42938432-42938451 None:intergenic 40.0%
GCATTCCACATAGTAGCAAA+AGG - chr1.1:42938060-42938079 None:intergenic 40.0%
GGACCATCAAATGCAATTGA+GGG + chr1.1:42936552-42936571 MS.gene39253:CDS 40.0%
GTACTTTCCTCAACAGCATT+GGG - chr1.1:42937793-42937812 None:intergenic 40.0%
GTCAAACTAAAACCTTCTGG+TGG - chr1.1:42937928-42937947 None:intergenic 40.0%
GTGACAACTGGAAGAAAGTT+CGG - chr1.1:42938038-42938057 None:intergenic 40.0%
TAGTAGCAAAAGGTGACAAC+TGG - chr1.1:42938050-42938069 None:intergenic 40.0%
TCCCAAGAAATACATAGGTG+GGG - chr1.1:42939877-42939896 None:intergenic 40.0%
TCCCCACCTATGTATTTCTT+GGG + chr1.1:42939873-42939892 MS.gene39253:intron 40.0%
TCTTTGGATACCATCAAGGA+GGG - chr1.1:42936103-42936122 None:intergenic 40.0%
TGGACCATCAAATGCAATTG+AGG + chr1.1:42936551-42936570 MS.gene39253:CDS 40.0%
TTCAACAGAAGGATCATGAG+AGG - chr1.1:42937182-42937201 None:intergenic 40.0%
TTCCCCACCTATGTATTTCT+TGG + chr1.1:42939872-42939891 MS.gene39253:intron 40.0%
! ATACTCTGGTTTATGGGACA+AGG + chr1.1:42938831-42938850 MS.gene39253:intron 40.0%
! CCACTTTGAGAAGAGAAATG+AGG - chr1.1:42940140-42940159 None:intergenic 40.0%
! GATTTCATTGAAGGAGCACA+AGG + chr1.1:42936269-42936288 MS.gene39253:CDS 40.0%
! GTTCTGAGTGGTTCACAAAT+AGG + chr1.1:42940062-42940081 MS.gene39253:CDS 40.0%
! TGGCAGTTTCTGTTTTATCC+TGG - chr1.1:42936503-42936522 None:intergenic 40.0%
! TGTCACCTTTTGCTACTATG+TGG + chr1.1:42938052-42938071 MS.gene39253:CDS 40.0%
!! AGGACCTAAGTTCTGAGAAA+TGG + chr1.1:42936784-42936803 MS.gene39253:intron 40.0%
!! GGAAGAGTATGACGTTTTGA+AGG + chr1.1:42940088-42940107 MS.gene39253:CDS 40.0%
!! TTATCTCATACATGACGGAC+AGG + chr1.1:42939137-42939156 MS.gene39253:CDS 40.0%
!! TTTCTTTTAGGTACGCTTGC+TGG + chr1.1:42939009-42939028 MS.gene39253:intron 40.0%
!!! GGCTCTTCATTTTTTTGGAG+AGG - chr1.1:42938451-42938470 None:intergenic 40.0%
AACTCAGTCGCTCTGTTACT+TGG + chr1.1:42937437-42937456 MS.gene39253:CDS 45.0%
AAGCAACTGCTTCTGATGCT+TGG - chr1.1:42937621-42937640 None:intergenic 45.0%
ATGGGGCAGCTAAGTTATGT+GGG - chr1.1:42939512-42939531 None:intergenic 45.0%
CAACCTTATCTTGCCTTTGC+AGG - chr1.1:42938765-42938784 None:intergenic 45.0%
CAGAATGAAACAGTGGCAAG+TGG + chr1.1:42939066-42939085 MS.gene39253:CDS 45.0%
CATGGTGCAGCTAAGTTATG+TGG - chr1.1:42939665-42939684 None:intergenic 45.0%
CCAAACCAACACCAGAACAA+TGG - chr1.1:42940034-42940053 None:intergenic 45.0%
CCATATCGGAGAAGCCAAAA+AGG + chr1.1:42937026-42937045 MS.gene39253:CDS 45.0%
CGATACTGCACAAGATGCAT+TGG - chr1.1:42937740-42937759 None:intergenic 45.0%
CTCTTTGGATACCATCAAGG+AGG - chr1.1:42936104-42936123 None:intergenic 45.0%
CTGAAATGGCCAAAGAAACC+TGG + chr1.1:42937853-42937872 MS.gene39253:CDS 45.0%
CTGCAAAGGCAAGATAAGGT+TGG + chr1.1:42938763-42938782 MS.gene39253:intron 45.0%
CTTCCTGCAAAGGCAAGATA+AGG + chr1.1:42938759-42938778 MS.gene39253:intron 45.0%
GAGTGGTTCACAAATAGGCA+AGG + chr1.1:42940067-42940086 MS.gene39253:CDS 45.0%
GCTAACCATTGTTCTGGTGT+TGG + chr1.1:42940026-42940045 MS.gene39253:intron 45.0%
GCTATTGACCCATACCACAT+TGG + chr1.1:42938788-42938807 MS.gene39253:intron 45.0%
GCTGTTAATTACACAACCGG+AGG - chr1.1:42936328-42936347 None:intergenic 45.0%
TAAGGCTGTCTGTTGCAGTT+AGG + chr1.1:42938900-42938919 MS.gene39253:intron 45.0%
TCGGAAACTCCAGGTTTCTT+TGG - chr1.1:42937865-42937884 None:intergenic 45.0%
TTGGGGCAAACAGATACAAC+TGG + chr1.1:42936980-42936999 MS.gene39253:CDS 45.0%
! ACTCAGTCGCTCTGTTACTT+GGG + chr1.1:42937438-42937457 MS.gene39253:CDS 45.0%
! AGGGATCAAGCGTTTTTGTC+AGG - chr1.1:42939567-42939586 None:intergenic 45.0%
! AGGTCCATCGCTAATTTGTG+TGG + chr1.1:42936189-42936208 MS.gene39253:CDS 45.0%
! CTGGAATTTGCTTCCTGCAA+AGG + chr1.1:42938749-42938768 MS.gene39253:intron 45.0%
! GCTGGATACAATGTCGTTTG+TGG + chr1.1:42939027-42939046 MS.gene39253:CDS 45.0%
! GGTCCATCGCTAATTTGTGT+GGG + chr1.1:42936190-42936209 MS.gene39253:CDS 45.0%
! TGTGGAATGCCTTCTTTTCG+TGG + chr1.1:42938070-42938089 MS.gene39253:CDS 45.0%
! TGTTTGACTCTGAAGACACG+TGG + chr1.1:42937893-42937912 MS.gene39253:CDS 45.0%
! TTTGGCTTCTCCGATATGGA+TGG - chr1.1:42937025-42937044 None:intergenic 45.0%
!! AGAGGTGTCTTTGGAACAGT+GGG + chr1.1:42936527-42936546 MS.gene39253:CDS 45.0%
!! CAAACAGCTGGTCTTCTCTT+TGG - chr1.1:42936119-42936138 None:intergenic 45.0%
!! CCATTGTTCTGGTGTTGGTT+TGG + chr1.1:42940031-42940050 MS.gene39253:intron 45.0%
!! GAGGTGCAATGTTTTAGACC+TGG + chr1.1:42936377-42936396 MS.gene39253:CDS 45.0%
!! GATCAGTTGGCAAAGCATTG+TGG - chr1.1:42936227-42936246 None:intergenic 45.0%
!! TGCTGTTGAGGAAAGTACTG+TGG + chr1.1:42937795-42937814 MS.gene39253:CDS 45.0%
!!! ATATGGGCACTTGTTTTGGG+TGG + chr1.1:42939906-42939925 MS.gene39253:intron 45.0%
!!! CCTTTTTGGCTTCTCCGATA+TGG - chr1.1:42937029-42937048 None:intergenic 45.0%
AACAGAAACTGCCACTGCAG+AGG + chr1.1:42936509-42936528 MS.gene39253:CDS 50.0%
ACATCCTCCCAATGCTGTTG+AGG + chr1.1:42937783-42937802 MS.gene39253:CDS 50.0%
ATCCGATATCTACCCTTCCG+AGG - chr1.1:42936252-42936271 None:intergenic 50.0%
CACAATCGGCAGTGGGAAAA+TGG - chr1.1:42936839-42936858 None:intergenic 50.0%
CATGGGGCAGCTAAGTTATG+TGG - chr1.1:42939513-42939532 None:intergenic 50.0%
CATTGCACCTCTCATCTTGC+AGG - chr1.1:42936368-42936387 None:intergenic 50.0%
CTGAGCTCTTCAACAACAGC+AGG - chr1.1:42938258-42938277 None:intergenic 50.0%
CTGCTGTTGTTGAAGAGCTC+AGG + chr1.1:42938256-42938275 MS.gene39253:CDS 50.0%
CTTTGCCAACTGATCGTCCT+CGG + chr1.1:42936232-42936251 MS.gene39253:CDS 50.0%
GCATCAGAAGCAGTTGCTTC+TGG + chr1.1:42937622-42937641 MS.gene39253:CDS 50.0%
GTCCTCGGAAGGGTAGATAT+CGG + chr1.1:42936247-42936266 MS.gene39253:CDS 50.0%
TCGGAGAAGCCAAAAAGGGT+TGG + chr1.1:42937031-42937050 MS.gene39253:CDS 50.0%
TGCACAATGTTGGCGAGTTC+TGG + chr1.1:42938730-42938749 MS.gene39253:intron 50.0%
TGCTTCTGATGCTTGGCTCA+AGG - chr1.1:42937614-42937633 None:intergenic 50.0%
TGGGGCAGCTAAGTTATGTG+GGG - chr1.1:42939511-42939530 None:intergenic 50.0%
TGGTTTGATGCTCCACCAGA+AGG + chr1.1:42937913-42937932 MS.gene39253:CDS 50.0%
TTCCAAAGACACCTCTGCAG+TGG - chr1.1:42936523-42936542 None:intergenic 50.0%
TTGCAATTGGCCCTCCTTGA+TGG + chr1.1:42936090-42936109 MS.gene39253:CDS 50.0%
! AAATGAGGTGCTCGACCAAG+TGG - chr1.1:42940125-42940144 None:intergenic 50.0%
! AGCAGTTGCTTCTGGAGACT+CGG + chr1.1:42937630-42937649 MS.gene39253:CDS 50.0%
! CAGGAGGGACTTGTTTCTCA+AGG + chr1.1:42939156-42939175 MS.gene39253:CDS 50.0%
! CTTTCCTCAACAGCATTGGG+AGG - chr1.1:42937790-42937809 None:intergenic 50.0%
! GGGTTGGCAATAAAGTGGTC+AGG + chr1.1:42937047-42937066 MS.gene39253:CDS 50.0%
! TCAACAGCATTGGGAGGATG+TGG - chr1.1:42937784-42937803 None:intergenic 50.0%
! TCTTGTGCAGTATCGGAAGC+AGG + chr1.1:42937745-42937764 MS.gene39253:intron 50.0%
!! CAGAGGTGTCTTTGGAACAG+TGG + chr1.1:42936526-42936545 MS.gene39253:CDS 50.0%
!! CGACTTGCCACGATTAGCTT+TGG - chr1.1:42936873-42936892 None:intergenic 50.0%
!! CTCATACATGACGGACAGGA+GGG + chr1.1:42939141-42939160 MS.gene39253:CDS 50.0%
!! GGCAAAGCATTGTGGCACAA+TGG - chr1.1:42936219-42936238 None:intergenic 50.0%
!! TCTCATACATGACGGACAGG+AGG + chr1.1:42939140-42939159 MS.gene39253:CDS 50.0%
!! TGGTGTTGGTTTGGTGAAGC+AGG + chr1.1:42940040-42940059 MS.gene39253:intron 50.0%
!! TTGGTGAAGCAGGTTCTGAG+TGG + chr1.1:42940050-42940069 MS.gene39253:intron 50.0%
CAGATCCAGCTGCAAACAGC+TGG - chr1.1:42936131-42936150 None:intergenic 55.0%
CCAACTGATCGTCCTCGGAA+GGG + chr1.1:42936237-42936256 MS.gene39253:CDS 55.0%
GAAGACCAGCTGTTTGCAGC+TGG + chr1.1:42936123-42936142 MS.gene39253:CDS 55.0%
GACTCGGATCCCAATGATGC+TGG + chr1.1:42937646-42937665 MS.gene39253:CDS 55.0%
GCAGGGTCCAAAGCTAATCG+TGG + chr1.1:42936863-42936882 MS.gene39253:intron 55.0%
TGCAACGCACAATCGGCAGT+GGG - chr1.1:42936846-42936865 None:intergenic 55.0%
TGGACCCTGCAACGCACAAT+CGG - chr1.1:42936853-42936872 None:intergenic 55.0%
! ACTGCCGATTGTGCGTTGCA+GGG + chr1.1:42936846-42936865 MS.gene39253:intron 55.0%
!! GTGTCTTTGGAACAGTGGGC+TGG + chr1.1:42936531-42936550 MS.gene39253:CDS 55.0%
!! TGCCACTGCAGAGGTGTCTT+TGG + chr1.1:42936518-42936537 MS.gene39253:CDS 55.0%
CCCTTCCGAGGACGATCAGT+TGG - chr1.1:42936240-42936259 None:intergenic 60.0%
CTGCAACGCACAATCGGCAG+TGG - chr1.1:42936847-42936866 None:intergenic 60.0%
CTGGGAGCCTGCAAGATGAG+AGG + chr1.1:42936358-42936377 MS.gene39253:CDS 60.0%
GCCAACTGATCGTCCTCGGA+AGG + chr1.1:42936236-42936255 MS.gene39253:CDS 60.0%
! CACTGCCGATTGTGCGTTGC+AGG + chr1.1:42936845-42936864 MS.gene39253:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 42935985 42940166 42935985 ID=MS.gene39253
chr1.1 mRNA 42935985 42940166 42935985 ID=MS.gene39253.t1;Parent=MS.gene39253
chr1.1 exon 42935985 42936633 42935985 ID=MS.gene39253.t1.exon1;Parent=MS.gene39253.t1
chr1.1 CDS 42935985 42936633 42935985 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1 exon 42936867 42937667 42936867 ID=MS.gene39253.t1.exon2;Parent=MS.gene39253.t1
chr1.1 CDS 42936867 42937667 42936867 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1 exon 42937755 42937948 42937755 ID=MS.gene39253.t1.exon3;Parent=MS.gene39253.t1
chr1.1 CDS 42937755 42937948 42937755 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1 exon 42938051 42938314 42938051 ID=MS.gene39253.t1.exon4;Parent=MS.gene39253.t1
chr1.1 CDS 42938051 42938314 42938051 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1 exon 42939019 42939177 42939019 ID=MS.gene39253.t1.exon5;Parent=MS.gene39253.t1
chr1.1 CDS 42939019 42939177 42939019 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
chr1.1 exon 42940062 42940166 42940062 ID=MS.gene39253.t1.exon6;Parent=MS.gene39253.t1
chr1.1 CDS 42940062 42940166 42940062 ID=cds.MS.gene39253.t1;Parent=MS.gene39253.t1
Gene Sequence

>MS.gene39253

ATGTTAAAACTTATTGTGAAGTTCTTTGTGCCTTATGCTATTTCTAGAAACTTGCTTCTGATGGAGAAGAACCAGCTTGTTTTTGTCAAAGATGCTGTTTTGAAATTGCAATTGGCCCTCCTTGATGGTATCCAAAGAGAAGACCAGCTGTTTGCAGCTGGATCTGTGATATCAAAGAGTGACTATGAAGATGTTGTAACTGAAAGGTCCATCGCTAATTTGTGTGGGTATCCATTGTGCCACAATGCTTTGCCAACTGATCGTCCTCGGAAGGGTAGATATCGGATTTCATTGAAGGAGCACAAGGTGTATGACCTACACGAAACTTACATGTTTTGTTCCTCCGGTTGTGTAATTAACAGCAAAGCTTTTGCTGGGAGCCTGCAAGATGAGAGGTGCAATGTTTTAGACCTGGAGAAACTGAACAATGTTCTTAGGTTGTTTGGAAATTTGAACTTGGAACCAATGGAAAATTTTGGAAAGGATGGAGAATTAGATTTTTCTGACTTGAAAATCCAGGATAAAACAGAAACTGCCACTGCAGAGGTGTCTTTGGAACAGTGGGCTGGACCATCAAATGCAATTGAGGGTTATGTACCAAAACAAAGAGACAATGATTCTAAGGCTTCTAAGAAAAATGCTAAAAAAGGTGATAATTTTACAGCATCCAATATAATTTTTTGAAATCCTAGACTATTAGATAGCCTTATGCCATTTTTTGCTCAAAAGTGTCTGATTATTGTATTGTATTCTTTGTTTTCCTGATGGGTGATTGTAATATACTATAATTGTAAAGTTGAGGACCTAAGTTCTGAGAAATGGAATAGTGCAGTTACTTATTCTTATCTTTTCCATTTTCCCACTGCCGATTGTGCGTTGCAGGGTCCAAAGCTAATCGTGGCAAGTCGAATGATTATAAAAGTTTAATTGGCAGTGAGTTTGACTTCACGAGTACAATAATTACACAAGATGAGTATAGTGTTTCGAAAGTATCATTGGGGCAAACAGATACAACTGGTGATCATCAAATTAAGCTGCCATCCATATCGGAGAAGCCAAAAAGGGTTGGCAATAAAGTGGTCAGGAAAGATGAAAATATACAAGATCTTTCTTCATCTTTTGAGTGTACTGTAAATTTAAGTACCTCAACAAAAGAGAAGGAAATAGCGAATTCATGTAAAGATGTTCTCAAATCCTCTCATGATCCTTCTGTTGAAAAGAAAGTTGTCCACTCGATTACCATTTCAGAAAGAGAATGTGATGCAGAACAGAATGATTCTGAAAGGAAATCGATACAACTCAAAGAGGAAAATAGTATAGTTGCTGCTAACGATGATGCTTCCACTTCCAATTTAAATTCTGCCAATGTTGAAGAGAAATTCCTAATTGAAAAAGCAATTGAATCATGCCATACTAAACCAAAATCTTCTCTTAAATCTAACGGTAAAAAGAAACTCAGTCGCTCTGTTACTTGGGCTGATGAGAAAATCAACAGTTCTGGGAGTAAAGATCTTTGTGCAGTGAAAGAATTTGGAAACATTAAAAAGGAGTCTGGTGTGGCTGATAACGTAGATTCTGCTGATGAAGATATGTTACGTTGCACATTAGCAGAAGCTTGTGCAATTGCCTTGAGCCAAGCATCAGAAGCAGTTGCTTCTGGAGACTCGGATCCCAATGATGCTGGTAATTGATGTTTCTTTAGAGGATTTTCTATTTGAATGCTAAATTATTTCTAATTATATTTTTTGTGTACCAATGCATCTTGTGCAGTATCGGAAGCAGGAATCACTATACTGCCACATCCTCCCAATGCTGTTGAGGAAAGTACTGTGGACGATGATGACATTCTAGAAAAAAATTCAGTTACTCTGAAATGGCCAAAGAAACCTGGAGTTTCCGAATTTGATTTGTTTGACTCTGAAGACACGTGGTTTGATGCTCCACCAGAAGGTTTTAGTTTGACTGTAAGTCTAATAATTTTTTTTAAAAAAGTATATTAAGCTATACAAGTTTTTATATTATACTCAATTACATACTTTGTTTTTTTTTTCCGAACTTTCTTCCAGTTGTCACCTTTTGCTACTATGTGGAATGCCTTCTTTTCGTGGATAACATCATCTTCTTTGGCATATATATATGGGAGGGATGTAAGTTTTCATGAAGAATTTCTATCAGTTAATGGGAGAGAATATCCTAGCAAAATTGTCTTGACAGATGGTCGTTCATCTGAAATAAAACAAACATTAGTTGGTTGTCTTGCTCGAGCTTTACCTGCTGTTGTTGAAGAGCTCAGGTTGCCAATACCCGTAGATATATTAGAGCAAGCGATGGTAAGATTTTTAAGTTATCTGTTTATTATCCTTGTTTTAAACTAAGTCATTAAATATTTATTACACTCTGGTAGGCAAGATCTACTGCAATTTATACTGTATCGATTAAGACATCCCTATTATGTTTGTGACCCCTCTCCAAAAAAATGAAGAGCCACTCATACACAAAATAAGGAATCAACAAAACTGTGGAAAAGGAAAATTCGCTTTGCACCTATAGCACATTCTCTTTGTTGGAAGCAAATACTGAAACGATATCTCTTAACTCCAAGTTTCATCAATTTTAGCATATGTGAAAAGGAACTGGTTTAGATGGCAGTTTGAATAATTCTTTGCTTTTAAAGCATTGCTTTATTAATTGGAAAAATGAAATATAATTTAGAAACATTATAAATTTTCGAATGGTGACTAGTTATGCACAATGTTGGCGAGTTCTGGAATTTGCTTCCTGCAAAGGCAAGATAAGGTTGGTTGCTATTGACCCATACCACATTGGCAACCATTTCTTTGTTTCTTATACTCTGGTTTATGGGACAAGGCTGCCTTCTTTTTCAAAATTTAGAAATTTCCAAAAAATCATGGGTTTAAGGCTGTCTGTTGCAGTTAGGCTCAAGATATATTCTCATATCAGTATTGACAAAAGTTTTTCAATATATCCATTTTTGTTTATATGAGGATGAGTTAAGTGCACAACTTTCTTTTAGGTACGCTTGCTGGATACAATGTCGTTTGTGGAAGCACTACCAGCATTCAGAATGAAACAGTGGCAAGTGGTTGTTCTCTTGATCATTGATGCATTGTCTGTTTCTAGAGTGCCTACTCTTATCTCATACATGACGGACAGGAGGGACTTGTTTCTCAAGGTGAGACCTTTTGTTTATATTGTTCTGATTTATTATTTTACCCACATTACTATGGTAGCAATCTGATTGATGCGCATGAAGCATTTGATAATGATATCAGGTAAGGTGAGACCGTATGTTTATATTGTTCTGATTTATTATTTTACCCACATTACTATGGTAGCAATCTGATTGACGTGCATGAAGCATTTTATAATGATATCAGGTTGCATATATAAATATCCCGACAAACATTTAATCCTTATTATTTTATTTGCTAGTATTTTGGTTACTTTTTATCTGCATTTCCTTCACCTTTGTTTGTTTATTCTAAATGTGAACTTAAATAAACCCCACATAACTTAGCTGCCCCATGCTTTCTTAATGATAGAAGGTTGCATGGATATCCTGACAAAAACGCTTGATCCCTATTATTACATTTGTTAGTGTTTTGGTTACTTTTTATCAGTGTTTCCTTCACCTCCAAACTTAACAAAATAAAATCCCACATAACTTAGCTGCACCATGCTTAGATATTATTTTACTCTATAATTTGGTTTATCTAATGTGGTTCTCCAATAGTTGTAAATTGTAATTGCTATGCGGATTTTTAGTTAAAGTGAGGTTGACTACATGATGTGCACTCAAATTGCCATATGAATAAAATTTACTTGCATATGCATTTGACTTTTACTTTTTTTTTAAATAAACCACTTTCCCCACCTATGTATTTCTTGGGAATGATGTTAATATGGGCACTTGTTTTGGGTGGAAATGATGTATGTAAACTGAGGTTAATCCTATCTTATTATTTTCAGTTTTCTTATCTTATGTCATGTTTTGCAATGATTTTACTCAACGTTTAATTTGCTAACCATTGTTCTGGTGTTGGTTTGGTGAAGCAGGTTCTGAGTGGTTCACAAATAGGCAAGGAAGAGTATGACGTTTTGAAGGATTTCGTTGTACCACTTGGTCGAGCACCTCATTTCTCTTCTCAAAGTGGAGCTTGA

Protein sequence

>MS.gene39253.t1

MLKLIVKFFVPYAISRNLLLMEKNQLVFVKDAVLKLQLALLDGIQREDQLFAAGSVISKSDYEDVVTERSIANLCGYPLCHNALPTDRPRKGRYRISLKEHKVYDLHETYMFCSSGCVINSKAFAGSLQDERCNVLDLEKLNNVLRLFGNLNLEPMENFGKDGELDFSDLKIQDKTETATAEVSLEQWAGPSNAIEGYVPKQRDNDSKASKKNAKKGSKANRGKSNDYKSLIGSEFDFTSTIITQDEYSVSKVSLGQTDTTGDHQIKLPSISEKPKRVGNKVVRKDENIQDLSSSFECTVNLSTSTKEKEIANSCKDVLKSSHDPSVEKKVVHSITISERECDAEQNDSERKSIQLKEENSIVAANDDASTSNLNSANVEEKFLIEKAIESCHTKPKSSLKSNGKKKLSRSVTWADEKINSSGSKDLCAVKEFGNIKKESGVADNVDSADEDMLRCTLAEACAIALSQASEAVASGDSDPNDAVSEAGITILPHPPNAVEESTVDDDDILEKNSVTLKWPKKPGVSEFDLFDSEDTWFDAPPEGFSLTLSPFATMWNAFFSWITSSSLAYIYGRDVSFHEEFLSVNGREYPSKIVLTDGRSSEIKQTLVGCLARALPAVVEELRLPIPVDILEQAMVRLLDTMSFVEALPAFRMKQWQVVVLLIIDALSVSRVPTLISYMTDRRDLFLKVLSGSQIGKEEYDVLKDFVVPLGRAPHFSSQSGA