Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39554.t1 | XP_013456902.1 | 98.1 | 521 | 4 | 1 | 1 | 515 | 1 | 521 | 5.20E-286 | 993 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39554.t1 | Q6Z6S1 | 60.1 | 509 | 187 | 6 | 8 | 515 | 7 | 500 | 2.1e-163 | 577.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39554.t1 | A0A072UPJ9 | 98.1 | 521 | 4 | 1 | 1 | 515 | 1 | 521 | 3.7e-286 | 993.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene39554 | 0.861024 | 1.37E-63 | -1.69E-46 |
| MS.gene049159 | MS.gene39554 | 0.851738 | 7.30E-61 | -1.69E-46 |
| MS.gene049254 | MS.gene39554 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene39554 | 0.831564 | 1.55E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene39554 | 0.812602 | 3.90E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene39554 | 0.860268 | 2.33E-63 | -1.69E-46 |
| MS.gene049647 | MS.gene39554 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene39554 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene39554 | 0.817779 | 2.76E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene39554 | 0.836684 | 8.10E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene39554 | 0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene39554 | 0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene39554 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene39554 | 0.80357 | 3.27E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene39554 | 0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene39554 | 0.820592 | 6.32E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene39554 | 0.820335 | 7.24E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene39554 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene39554 | 0.819106 | 1.38E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene39554 | 0.800418 | 1.46E-48 | -1.69E-46 |
| MS.gene050962 | MS.gene39554 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene39554 | 0.8399 | 1.20E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene39554 | 0.836226 | 1.06E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene39554 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene39554 | 0.824083 | 9.78E-54 | -1.69E-46 |
| MS.gene051388 | MS.gene39554 | 0.821974 | 3.03E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene39554 | 0.807208 | 5.66E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene39554 | 0.840897 | 6.59E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene39554 | 0.833155 | 6.27E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene39554 | 0.827567 | 1.46E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene39554 | 0.87203 | 4.35E-67 | -1.69E-46 |
| MS.gene051790 | MS.gene39554 | 0.806901 | 6.57E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene39554 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene051975 | MS.gene39554 | 0.804471 | 2.13E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene39554 | 0.822343 | 2.49E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene39554 | 0.834452 | 2.97E-56 | -1.69E-46 |
| MS.gene052323 | MS.gene39554 | 0.822489 | 2.31E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene39554 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene39554 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene39554 | 0.809154 | 2.18E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene39554 | 0.849164 | 3.85E-60 | -1.69E-46 |
| MS.gene052519 | MS.gene39554 | 0.830934 | 2.22E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene39554 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene39554 | 0.827655 | 1.39E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene39554 | 0.833474 | 5.22E-56 | -1.69E-46 |
| MS.gene052611 | MS.gene39554 | 0.829534 | 4.88E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene39554 | 0.821238 | 4.49E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene39554 | 0.837974 | 3.79E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene39554 | 0.825036 | 5.83E-54 | -1.69E-46 |
| MS.gene052896 | MS.gene39554 | 0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene39554 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene39554 | 0.857312 | 1.78E-62 | -1.69E-46 |
| MS.gene053122 | MS.gene39554 | 0.829638 | 4.60E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene39554 | 0.840009 | 1.13E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene39554 | 0.871619 | 5.96E-67 | -1.69E-46 |
| MS.gene053599 | MS.gene39554 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene39554 | 0.819871 | 9.25E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene39554 | 0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene39554 | 0.822754 | 2.00E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene39554 | 0.821952 | 3.07E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene39554 | 0.850953 | 1.22E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene39554 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene39554 | 0.853462 | 2.35E-61 | -1.69E-46 |
| MS.gene054775 | MS.gene39554 | 0.830099 | 3.55E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene39554 | 0.809939 | 1.48E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene39554 | 0.835377 | 1.74E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene39554 | 0.846848 | 1.68E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene39554 | 0.84074 | 7.25E-58 | -1.69E-46 |
| MS.gene055469 | MS.gene39554 | 0.813198 | 2.89E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene39554 | 0.838939 | 2.13E-57 | -1.69E-46 |
| MS.gene055513 | MS.gene39554 | 0.85652 | 3.04E-62 | -1.69E-46 |
| MS.gene055537 | MS.gene39554 | 0.800393 | 1.47E-48 | -1.69E-46 |
| MS.gene055580 | MS.gene39554 | -0.840505 | 8.35E-58 | -1.69E-46 |
| MS.gene055589 | MS.gene39554 | 0.811533 | 6.68E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene39554 | 0.829514 | 4.93E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene39554 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene39554 | -0.828332 | 9.53E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene39554 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene39554 | 0.832937 | 7.11E-56 | -1.69E-46 |
| MS.gene056173 | MS.gene39554 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene39554 | 0.821956 | 3.06E-53 | -1.69E-46 |
| MS.gene056215 | MS.gene39554 | 0.825637 | 4.20E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene39554 | 0.839706 | 1.35E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene39554 | 0.829191 | 5.91E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene39554 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene39554 | 0.815027 | 1.14E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene39554 | 0.805194 | 1.50E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene39554 | 0.832341 | 9.99E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene39554 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene39554 | 0.83357 | 4.94E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene39554 | 0.812321 | 4.50E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene39554 | 0.831807 | 1.35E-55 | -1.69E-46 |
| MS.gene057360 | MS.gene39554 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene39554 | 0.833669 | 4.67E-56 | -1.69E-46 |
| MS.gene057446 | MS.gene39554 | 0.814745 | 1.32E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene39554 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene39554 | 0.819469 | 1.14E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene39554 | 0.840874 | 6.69E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene39554 | 0.815019 | 1.15E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene39554 | 0.85408 | 1.56E-61 | -1.69E-46 |
| MS.gene058037 | MS.gene39554 | 0.812474 | 4.16E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene39554 | 0.816481 | 5.41E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene39554 | 0.815553 | 8.71E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene39554 | 0.807773 | 4.29E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene39554 | 0.823897 | 1.08E-53 | -1.69E-46 |
| MS.gene058636 | MS.gene39554 | 0.831266 | 1.84E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene39554 | 0.815041 | 1.13E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene39554 | 0.803065 | 4.16E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene39554 | 0.807394 | 5.16E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene39554 | 0.828121 | 1.07E-54 | -1.69E-46 |
| MS.gene059084 | MS.gene39554 | 0.826964 | 2.03E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene39554 | 0.815265 | 1.01E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene39554 | 0.843685 | 1.20E-58 | -1.69E-46 |
| MS.gene059625 | MS.gene39554 | 0.85061 | 1.52E-60 | -1.69E-46 |
| MS.gene059725 | MS.gene39554 | 0.80752 | 4.86E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene39554 | 0.854541 | 1.15E-61 | -1.69E-46 |
| MS.gene059937 | MS.gene39554 | 0.811281 | 7.57E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene39554 | 0.801682 | 8.03E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene39554 | 0.829117 | 6.16E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene39554 | 0.841049 | 6.02E-58 | -1.69E-46 |
| MS.gene060587 | MS.gene39554 | 0.854164 | 1.48E-61 | -1.69E-46 |
| MS.gene060637 | MS.gene39554 | 0.859186 | 4.92E-63 | -1.69E-46 |
| MS.gene060690 | MS.gene39554 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene39554 | 0.801261 | 9.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39554 | MS.gene26426 | PPI |
| MS.gene47554 | MS.gene39554 | PPI |
| MS.gene26605 | MS.gene39554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39554.t1 | MTR_4g087935 | 98.081 | 521 | 4 | 1 | 1 | 515 | 1 | 521 | 0.0 | 1050 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39554.t1 | AT2G34040 | 69.186 | 516 | 152 | 3 | 1 | 515 | 1 | 510 | 0.0 | 728 |
| MS.gene39554.t1 | AT2G34040 | 69.186 | 516 | 152 | 3 | 1 | 515 | 1 | 510 | 0.0 | 728 |
| MS.gene39554.t1 | AT1G29030 | 66.286 | 525 | 160 | 6 | 1 | 520 | 1 | 513 | 0.0 | 706 |
| MS.gene39554.t1 | AT1G29030 | 63.619 | 525 | 152 | 6 | 1 | 520 | 1 | 491 | 0.0 | 667 |
| MS.gene39554.t1 | AT2G34040 | 69.495 | 436 | 127 | 2 | 1 | 436 | 1 | 430 | 0.0 | 620 |
| MS.gene39554.t1 | AT3G19515 | 45.850 | 253 | 132 | 3 | 240 | 487 | 79 | 331 | 4.20e-60 | 212 |
| MS.gene39554.t1 | AT3G19515 | 47.368 | 133 | 68 | 1 | 12 | 142 | 1 | 133 | 3.48e-31 | 129 |
| MS.gene39554.t1 | AT1G23935 | 35.680 | 412 | 189 | 12 | 87 | 487 | 24 | 370 | 1.03e-55 | 202 |
| MS.gene39554.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 1.01e-43 | 167 |
| MS.gene39554.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 1.05e-43 | 167 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGAGTTTGAGCCTATT+TGG | 0.180255 | 4.2:+23314234 | MS.gene39554:CDS |
| TATAGAATTTCGAATGTTTA+TGG | 0.180281 | 4.2:+23314206 | MS.gene39554:CDS |
| AAGTTCTTTCCTGAACTTTC+CGG | 0.262685 | 4.2:+23312293 | MS.gene39554:CDS |
| ATAAGAGAATCAACCTTTCT+TGG | 0.268861 | 4.2:+23318692 | MS.gene39554:CDS |
| TTCAACAGTTCAGCTTTAAT+AGG | 0.270887 | 4.2:-23314014 | None:intergenic |
| TGTGGTTACAAAATTGTTAC+TGG | 0.288890 | 4.2:+23317343 | MS.gene39554:CDS |
| TTGAAGAAGGGTCGAGGTTC+TGG | 0.305212 | 4.2:+23319001 | MS.gene39554:CDS |
| GTGTCGTTCCATTTCCTCTT+GGG | 0.311853 | 4.2:-23314039 | None:intergenic |
| ACTCAATACTCATCTTGATT+TGG | 0.327382 | 4.2:+23312322 | MS.gene39554:CDS |
| TGTTATTCCTGCCAGCTTCC+TGG | 0.336157 | 4.2:+23315300 | MS.gene39554:intron |
| CTTCTTCAATGCAATATTGT+TGG | 0.340511 | 4.2:-23318987 | None:intergenic |
| CAAATAGGCTCAAACTCTTC+AGG | 0.344533 | 4.2:-23314233 | None:intergenic |
| TTTGTAACCACATAAACTAT+TGG | 0.362776 | 4.2:-23317332 | None:intergenic |
| GGCTGAAAACAACAAATCTA+TGG | 0.365544 | 4.2:+23318308 | MS.gene39554:CDS |
| CAGAGTTTAGAAGATGTAAC+TGG | 0.369726 | 4.2:+23314183 | MS.gene39554:intron |
| CATCGTCAAAATATTATTGC+AGG | 0.371200 | 4.2:-23318498 | None:intergenic |
| AAAGTACTTACCACAACAAT+TGG | 0.378420 | 4.2:-23314611 | None:intergenic |
| ATCGAGAAGCTCTACCAATA+TGG | 0.380527 | 4.2:+23312063 | MS.gene39554:CDS |
| TGTGTCGTTCCATTTCCTCT+TGG | 0.385006 | 4.2:-23314040 | None:intergenic |
| TCAACAGTTCAGCTTTAATA+GGG | 0.391621 | 4.2:-23314013 | None:intergenic |
| TTTAACCTGAGATTTGTCTT+TGG | 0.398392 | 4.2:-23312103 | None:intergenic |
| AAGGATACACCTGAGAATAT+TGG | 0.399203 | 4.2:+23312534 | MS.gene39554:CDS |
| GTTGAAGCCCCAAGAGGAAA+TGG | 0.404679 | 4.2:+23314031 | MS.gene39554:CDS |
| AGTTGAGTTGCTCGCCATAT+TGG | 0.407050 | 4.2:-23312077 | None:intergenic |
| TCTTGTGCAACTTCTTTCCT+CGG | 0.408538 | 4.2:+23312572 | MS.gene39554:CDS |
| TTCAGCAACTGAACAATAGA+AGG | 0.408687 | 4.2:-23315402 | None:intergenic |
| TGCGGTAGTTGATGCAGATT+TGG | 0.413366 | 4.2:-23318725 | None:intergenic |
| CTCGATGTAAGCAGCTTCTT+CGG | 0.414250 | 4.2:-23312046 | None:intergenic |
| AATATTGTTGGATCCATTGC+CGG | 0.421230 | 4.2:-23318975 | None:intergenic |
| AGTGCAAGACCGGAAAGTTC+AGG | 0.423488 | 4.2:-23312302 | None:intergenic |
| AAAGGTTTACCTTGTGAGCT+AGG | 0.427066 | 4.2:-23317219 | None:intergenic |
| TCGGAAGGTTCAGTAGTCAT+TGG | 0.427839 | 4.2:-23312027 | None:intergenic |
| TGTAAAATTCATCTCTTCTC+CGG | 0.428906 | 4.2:-23317164 | None:intergenic |
| CATAAACTATTGGTGGCATT+AGG | 0.430397 | 4.2:-23317322 | None:intergenic |
| TTTGAGCCTATTTGGAGAAA+AGG | 0.433300 | 4.2:+23314242 | MS.gene39554:CDS |
| TACATGACTTGGAAGAAAAC+CGG | 0.437540 | 4.2:+23317145 | MS.gene39554:CDS |
| TGGTTGCTTCTTTCCAAGAA+AGG | 0.448903 | 4.2:-23318705 | None:intergenic |
| TTACTGGCCAGCCATCTGAT+AGG | 0.452743 | 4.2:+23317359 | MS.gene39554:CDS |
| TGCTAAAACTGATGAAGAAA+AGG | 0.453582 | 4.2:+23318335 | MS.gene39554:CDS |
| CAACTACCGCACATGCTGTT+GGG | 0.455294 | 4.2:+23318737 | MS.gene39554:CDS |
| CAACAATATTGCATTGAAGA+AGG | 0.456268 | 4.2:+23318988 | MS.gene39554:CDS |
| GGAAAGAACTTGAAGAACTT+AGG | 0.456756 | 4.2:-23312281 | None:intergenic |
| TACTCATCTTGATTTGGTTG+AGG | 0.467134 | 4.2:+23312328 | MS.gene39554:CDS |
| TCTGATGTCTCTGCTGAGGC+AGG | 0.468867 | 4.2:+23312718 | MS.gene39554:CDS |
| AATGCCACCAATAGTTTATG+TGG | 0.470729 | 4.2:+23317325 | MS.gene39554:CDS |
| GATCCATTGCCGGTAGTAGC+AGG | 0.473237 | 4.2:-23318965 | None:intergenic |
| TAATGTTGAAGAGCAAAATT+CGG | 0.475477 | 4.2:+23313859 | MS.gene39554:CDS |
| ATCAAACAGATCATATTCAT+AGG | 0.483162 | 4.2:+23314561 | MS.gene39554:CDS |
| GGCCAGCCATCTGATAGGCT+TGG | 0.484204 | 4.2:+23317364 | MS.gene39554:CDS |
| AGCTCTTCCATACGCTCAGC+TGG | 0.487308 | 4.2:-23314267 | None:intergenic |
| CTTGTGCAACTTCTTTCCTC+GGG | 0.493032 | 4.2:+23312573 | MS.gene39554:CDS |
| GGATGACCTTAGTCGTGAAA+AGG | 0.497612 | 4.2:+23313880 | MS.gene39554:CDS |
| GTTCGGGTGCAAGCGATAAG+AGG | 0.497959 | 4.2:+23312495 | MS.gene39554:CDS |
| TAATTTCTTGATTGTAGCCC+GGG | 0.498079 | 4.2:-23318274 | None:intergenic |
| TGGTTGAGGCTGATGAACTC+GGG | 0.499099 | 4.2:+23312342 | MS.gene39554:CDS |
| ATGAGTATTGAGTGCAAGAC+CGG | 0.502685 | 4.2:-23312312 | None:intergenic |
| TCAACTACCGCACATGCTGT+TGG | 0.504673 | 4.2:+23318736 | MS.gene39554:CDS |
| TTCTATTGTTCAGTTGCTGA+AGG | 0.506926 | 4.2:+23315404 | MS.gene39554:CDS |
| GTAACCACATAAACTATTGG+TGG | 0.507469 | 4.2:-23317329 | None:intergenic |
| ACTTTGTTTAAGCACATTCG+TGG | 0.507835 | 4.2:+23313836 | MS.gene39554:CDS |
| CTCCAAGCCTATCAGATGGC+TGG | 0.509361 | 4.2:-23317366 | None:intergenic |
| CGGCCTGCTACTACCGGCAA+TGG | 0.510354 | 4.2:+23318962 | MS.gene39554:CDS |
| GAGCTGCTTGGAATCATTGA+AGG | 0.510702 | 4.2:+23314285 | MS.gene39554:CDS |
| TTTACTTCTGCAGAGCGAAA+CGG | 0.514981 | 4.2:+23318942 | MS.gene39554:intron |
| TTGGTTGAGGCTGATGAACT+CGG | 0.515860 | 4.2:+23312341 | MS.gene39554:CDS |
| TGTCGTTCCATTTCCTCTTG+GGG | 0.527654 | 4.2:-23314038 | None:intergenic |
| AAAGGCTCCAGCTGAGCGTA+TGG | 0.527823 | 4.2:+23314260 | MS.gene39554:CDS |
| CTCTTATCTCCAATAAAAGA+AGG | 0.529752 | 4.2:-23318676 | None:intergenic |
| GAGCGTATGGAAGAGCTGCT+TGG | 0.531459 | 4.2:+23314273 | MS.gene39554:CDS |
| TTAATTTCTTGATTGTAGCC+CGG | 0.533817 | 4.2:-23318275 | None:intergenic |
| AACAATATTGCATTGAAGAA+GGG | 0.536121 | 4.2:+23318989 | MS.gene39554:CDS |
| CAAGAAATTAACTCAAGGAA+TGG | 0.547093 | 4.2:+23318287 | MS.gene39554:CDS |
| CATGGCACTTCCAATTGTTG+TGG | 0.547852 | 4.2:+23314601 | MS.gene39554:CDS |
| CTCTTCCAAAGACAAATCTC+AGG | 0.550702 | 4.2:+23312098 | MS.gene39554:CDS |
| CAGAACGTCAAGGATTATCA+AGG | 0.554085 | 4.2:+23312200 | MS.gene39554:intron |
| GGTGTATCCTTGCAGAAAAG+AGG | 0.555555 | 4.2:-23312522 | None:intergenic |
| GGAGCGTGATGCTGTGCATA+AGG | 0.570343 | 4.2:+23312694 | MS.gene39554:CDS |
| ATGTAAGCAGCTTCTTCGGA+AGG | 0.580643 | 4.2:-23312042 | None:intergenic |
| AAAACGTTGAGGAGTTCACC+CGG | 0.582162 | 4.2:+23318256 | MS.gene39554:CDS |
| GCGAAACGGCCTGCTACTAC+CGG | 0.584616 | 4.2:+23318956 | MS.gene39554:CDS |
| ATTGCATTGAAGAAGGGTCG+AGG | 0.602060 | 4.2:+23318995 | MS.gene39554:CDS |
| GAATCTTGTGGTGTTGTGAA+AGG | 0.604189 | 4.2:-23315366 | None:intergenic |
| ACAATCAAGAAATTAACTCA+AGG | 0.611947 | 4.2:+23318282 | MS.gene39554:CDS |
| ATTTCATCACCTAGCTCACA+AGG | 0.613487 | 4.2:+23317210 | MS.gene39554:CDS |
| CAATTGGAAGTGCCATGTGA+AGG | 0.614103 | 4.2:-23314595 | None:intergenic |
| AAGAAGGGTCGAGGTTCTGG+TGG | 0.621072 | 4.2:+23319004 | MS.gene39554:CDS |
| AAACGAGTAATCACATTGAA+CGG | 0.622809 | 4.2:-23314327 | None:intergenic |
| TGAAAGGTGAAAACTCTGCA+AGG | 0.622969 | 4.2:-23315350 | None:intergenic |
| CTGCTGAGGCAGGATGTGAA+AGG | 0.630646 | 4.2:+23312728 | MS.gene39554:CDS |
| GTTGATATCATGCCTTCACA+TGG | 0.637100 | 4.2:+23314583 | MS.gene39554:CDS |
| AGGCTCTGATGTCTCTGCTG+AGG | 0.641155 | 4.2:+23312714 | MS.gene39554:CDS |
| TCTTCTCCAAGCCTATCAGA+TGG | 0.644984 | 4.2:-23317370 | None:intergenic |
| AGCATTTGTCGTGAATCTTG+TGG | 0.650972 | 4.2:-23315378 | None:intergenic |
| ACAATACCCAACAGCATGTG+CGG | 0.655724 | 4.2:-23318743 | None:intergenic |
| GGTTGAGGCTGATGAACTCG+GGG | 0.657264 | 4.2:+23312343 | MS.gene39554:CDS |
| TGAACTGTTGAAGCCCCAAG+AGG | 0.674998 | 4.2:+23314025 | MS.gene39554:CDS |
| AAACGTTGAGGAGTTCACCC+GGG | 0.696711 | 4.2:+23318257 | MS.gene39554:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 23312030 | 23319338 | 23312030 | ID=MS.gene39554 |
| chr4.2 | mRNA | 23312030 | 23319338 | 23312030 | ID=MS.gene39554.t1;Parent=MS.gene39554 |
| chr4.2 | exon | 23312030 | 23312119 | 23312030 | ID=MS.gene39554.t1.exon1;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23312030 | 23312119 | 23312030 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23312203 | 23312364 | 23312203 | ID=MS.gene39554.t1.exon2;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23312203 | 23312364 | 23312203 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23312495 | 23312594 | 23312495 | ID=MS.gene39554.t1.exon3;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23312495 | 23312594 | 23312495 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23312684 | 23312749 | 23312684 | ID=MS.gene39554.t1.exon4;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23312684 | 23312749 | 23312684 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23313825 | 23313925 | 23313825 | ID=MS.gene39554.t1.exon5;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23313825 | 23313925 | 23313825 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23314008 | 23314082 | 23314008 | ID=MS.gene39554.t1.exon6;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23314008 | 23314082 | 23314008 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23314186 | 23314335 | 23314186 | ID=MS.gene39554.t1.exon7;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23314186 | 23314335 | 23314186 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23314548 | 23314622 | 23314548 | ID=MS.gene39554.t1.exon8;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23314548 | 23314622 | 23314548 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23314706 | 23314771 | 23314706 | ID=MS.gene39554.t1.exon9;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23314706 | 23314771 | 23314706 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23315315 | 23315425 | 23315315 | ID=MS.gene39554.t1.exon10;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23315315 | 23315425 | 23315315 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23317142 | 23317231 | 23317142 | ID=MS.gene39554.t1.exon11;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23317142 | 23317231 | 23317142 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23317319 | 23317425 | 23317319 | ID=MS.gene39554.t1.exon12;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23317319 | 23317425 | 23317319 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23318251 | 23318365 | 23318251 | ID=MS.gene39554.t1.exon13;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23318251 | 23318365 | 23318251 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23318461 | 23318526 | 23318461 | ID=MS.gene39554.t1.exon14;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23318461 | 23318526 | 23318461 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23318658 | 23318758 | 23318658 | ID=MS.gene39554.t1.exon15;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23318658 | 23318758 | 23318658 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23318955 | 23319025 | 23318955 | ID=MS.gene39554.t1.exon16;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23318955 | 23319025 | 23318955 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| chr4.2 | exon | 23319298 | 23319338 | 23319298 | ID=MS.gene39554.t1.exon17;Parent=MS.gene39554.t1 |
| chr4.2 | CDS | 23319298 | 23319338 | 23319298 | ID=cds.MS.gene39554.t1;Parent=MS.gene39554.t1 |
| Gene Sequence |
| Protein sequence |
