AlfalfaGEDB | MS.gene27041

M. sativa cultivar XinJiangDaYe / MS.gene27041

KEGG: K14570
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00929.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27041.t1	XP_013466165.1	97.5	550	14	0	1	550	1	550	2.10E-261	911.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27041.t1	Q8RXK2	47.2	472	230	6	1	461	1	464	2.8e-110	400.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27041.t1	A0A072VF22	97.5	550	14	0	1	550	1	550	1.5e-261	911.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene27041	0.831466	1.64E-55	-1.69E-46
MS.gene049441	MS.gene27041	0.807528	4.84E-50	-1.69E-46
MS.gene049824	MS.gene27041	0.847665	1.00E-59	-1.69E-46
MS.gene049825	MS.gene27041	0.844182	8.86E-59	-1.69E-46
MS.gene049873	MS.gene27041	0.821712	3.49E-53	-1.69E-46
MS.gene050303	MS.gene27041	0.803074	4.15E-49	-1.69E-46
MS.gene050885	MS.gene27041	0.801027	1.09E-48	-1.69E-46
MS.gene051247	MS.gene27041	0.818015	2.44E-52	-1.69E-46
MS.gene051700	MS.gene27041	0.841067	5.95E-58	-1.69E-46
MS.gene051744	MS.gene27041	0.849603	2.91E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27041.t1	MTR_1g023955	97.818	550	12	0	1	550	1	550	0.0	1106
MS.gene27041.t1	MTR_1g423960	96.000	100	4	0	1	100	1	100	2.46e-63	202
MS.gene27041.t1	MTR_1g029410	45.283	159	85	2	142	300	255	411	2.63e-32	129
MS.gene27041.t1	MTR_1g029410	45.283	159	85	2	142	300	218	374	9.79e-32	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27041.t1	AT5G67240	50.585	427	196	6	1	415	1	424	1.54e-142	421
MS.gene27041.t1	AT5G67240	50.585	427	196	6	1	415	1	424	1.90e-141	423
MS.gene27041.t1	AT5G67240	32.500	160	102	3	316	471	465	622	2.32e-16	82.8
MS.gene27041.t1	AT5G67240	50.585	427	196	6	1	415	1	424	7.21e-141	421
MS.gene27041.t1	AT5G67240	45.000	100	54	1	316	415	465	563	6.35e-19	90.9
MS.gene27041.t1	AT5G67240	50.585	427	196	6	1	415	1	424	6.60e-140	424
MS.gene27041.t1	AT5G67240	45.000	100	54	1	316	415	465	563	6.28e-19	91.3
MS.gene27041.t1	AT5G67240	32.500	160	102	3	316	471	604	761	3.90e-16	82.4
MS.gene27041.t1	AT3G50100	47.506	421	203	7	1	415	1	409	7.64e-126	375
MS.gene27041.t1	AT5G05540	44.681	423	221	7	1	415	1	418	2.15e-105	324

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Find 111 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACATTCTCAACGGATG+AGG	0.517939	1.1:-1046067	MS.gene27041:CDS
AAAGAGGTCCCATGAGGTTT+TGG	0.280323	1.1:-1046100	MS.gene27041:CDS
AAAGGCATGAAGGGTAAAAT+GGG	0.471068	1.1:-1046186	MS.gene27041:CDS
AAATGCAGCCAAAACCTCAT+GGG	0.595175	1.1:+1046092	None:intergenic
AAATGGTTCTCTGTGAAGAT+GGG	0.588526	1.1:-1043849	MS.gene27041:CDS
AAGCGGAGATTGAATCATCG+AGG	0.696061	1.1:-1041417	MS.gene27041:CDS
AATAATCCATTGGATACATA+GGG	0.550785	1.1:+1045081	None:intergenic
AATCATTGAGAGAACAGTTG+AGG	0.578459	1.1:-1041552	MS.gene27041:CDS
AATGGATCCTGAAGTTGAAA+AGG	0.473741	1.1:-1041638	MS.gene27041:CDS
AATTACCTGTATATCAGCTA+AGG	0.584653	1.1:+1043531	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGTAGCCACAATTA+CGG	+	chr1.1:1042070-1042089	None:intergenic	30.0%
AACCAGGAAAAATAACACAA+CGG	+	chr1.1:1045398-1045417	None:intergenic	30.0%
AAGAAGCAAATGCAAAACAA+AGG	+	chr1.1:1041391-1041410	None:intergenic	30.0%
AATCATAATATTCGCATTGC+GGG	+	chr1.1:1045573-1045592	None:intergenic	30.0%
AATTACCTGTATATCAGCTA+AGG	+	chr1.1:1045157-1045176	None:intergenic	30.0%
AATTACTGCTCTGCATAAAA+TGG	-	chr1.1:1047317-1047336	MS.gene27041:intron	30.0%
ACAAACTCACAAGCAAATTA+CGG	-	chr1.1:1045761-1045780	MS.gene27041:intron	30.0%
ACATGAATGTCTTCAATTTG+AGG	-	chr1.1:1046277-1046296	MS.gene27041:intron	30.0%
AGCATTTGAAAGGAAGATAA+AGG	+	chr1.1:1045202-1045221	None:intergenic	30.0%
AGTGGACCTTAAAAAAAACA+TGG	-	chr1.1:1043850-1043869	MS.gene27041:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	1041330	1047377	1041330	ID=MS.gene27041
chr1.1	mRNA	1041330	1047377	1041330	ID=MS.gene27041.t1;Parent=MS.gene27041
chr1.1	exon	1047345	1047377	1047345	ID=MS.gene27041.t1.exon1;Parent=MS.gene27041.t1
chr1.1	CDS	1047345	1047377	1047345	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1046059	1046241	1046059	ID=MS.gene27041.t1.exon2;Parent=MS.gene27041.t1
chr1.1	CDS	1046059	1046241	1046059	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1045854	1045937	1045854	ID=MS.gene27041.t1.exon3;Parent=MS.gene27041.t1
chr1.1	CDS	1045854	1045937	1045854	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1045061	1045129	1045061	ID=MS.gene27041.t1.exon4;Parent=MS.gene27041.t1
chr1.1	CDS	1045061	1045129	1045061	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1043804	1043944	1043804	ID=MS.gene27041.t1.exon5;Parent=MS.gene27041.t1
chr1.1	CDS	1043804	1043944	1043804	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1043537	1043653	1043537	ID=MS.gene27041.t1.exon6;Parent=MS.gene27041.t1
chr1.1	CDS	1043537	1043653	1043537	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1043387	1043456	1043387	ID=MS.gene27041.t1.exon7;Parent=MS.gene27041.t1
chr1.1	CDS	1043387	1043456	1043387	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1043157	1043257	1043157	ID=MS.gene27041.t1.exon8;Parent=MS.gene27041.t1
chr1.1	CDS	1043157	1043257	1043157	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1042715	1042855	1042715	ID=MS.gene27041.t1.exon9;Parent=MS.gene27041.t1
chr1.1	CDS	1042715	1042855	1042715	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1042504	1042611	1042504	ID=MS.gene27041.t1.exon10;Parent=MS.gene27041.t1
chr1.1	CDS	1042504	1042611	1042504	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1042206	1042310	1042206	ID=MS.gene27041.t1.exon11;Parent=MS.gene27041.t1
chr1.1	CDS	1042206	1042310	1042206	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1
chr1.1	exon	1041330	1041830	1041330	ID=MS.gene27041.t1.exon12;Parent=MS.gene27041.t1
chr1.1	CDS	1041330	1041830	1041330	ID=cds.MS.gene27041.t1;Parent=MS.gene27041.t1

Gene Sequence

>MS.gene27041

ATGGATGAGAAGATTGACACCGCGGAAAAGAAGGTAACTTTCTTATCCTACAGTATCTCCTTTGTTTTGCATTTGCTTCTTTGTTCTATTCGGTTGCAAATGCATCCCATTTTATTGCTTGATTAGATTGTTGGGTGGTTAAGAACCAATATGAGAATAAAATAAACATAGCGGGGATGTGTGGTAAGACTAGACAAGGTGGGATTTGAAATGACAACAAGAGAGAGAGAGAGTTGGGGTAGCACCCATAGTAGAAAATCTTGAAATGACTCAAGTTTTTAAAAGTGATCAGCGAAGACTTTCAGTTGAACTTTAGCCATGAGTGTCACAGATTGAATATGTTTTTGTAAACCTTTTGTTTTGTTTTTGAAATGCAATCAATATCTTTGTTTTTGAACTTTTGACATTGTAAGGGGAAAGAGATTTGATAGATAAACAACTGAAACGGAAAGGACTTTTCTCACTAACTGGAGTTAGCTATGTGAATCAAACTATGTCATTATGTCCTGCCATGGTACTGTTATGCATTCATTTGAATATTTTAGGTGCTGAATCTTAAATAAAGAAAAACACATTAAATTGTGTTTTTTATCAGCGAGTTCTGGTTCTAGTGATAAGGAGTTTTCCCCCTTTGAACAAGGTATTGGGTTCAAGTTTTGTAAATGGAGAAAATATATTGAATTATAGTTTGCAACTACAATATAGAAGTTTGAGAAGCCATTGCACCAGCATCATGACCGTAATTGTGGCTACATTTGTTCACAATTCTCGCCATTCAAGAGATTGCAGCACGCTTGCAACCGCGGCTTCAATCAGAATTTAAAACCTTGAAAACAGTGGCAGTTTTGTCTCCGTAAGTGGGTTTACCTAGTTCAAATCAGATTAGTCGCAAATCAAGATTCAAAGTGTATTTTGGATAATCATATATCAGGGAAAAAACTAGGGTATAATAAATGTCAATAAAGGATGTAATAGTTGTTTCTTGCACAGTTACACTTATGTTGATTCGTTCTGATAGTTTTTGATGTATACACCTGCTGGTTTAGATGAATGAAATCTCACACCTTTGTTAGCCTTTTGTTTTTCCGGTCTAGTTTTCTCCTTAACCCCAGAAACTAATACTTTAATGTGCATAGGTGTTGGTTGATATTGTAAAATTGGTACAAAAGAAAGGCATGAAGGGTAAAATGGGAGACTGGAAGGAATTCCTGAACAGTAATGATAAAAAATATGGGTCAGGTATGAGCGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCTCAACGGATGAGGATTTGAAGGTAAGTCATTTATATCCTTCCCTAGATATAAAGTTAAAAGCCCTCCTGATTTATATCCTTTCCTAAAGATAAAGTTAATCGCCCTCCAGATCAGTCTTACTCATTTTCTTCTTGTGCTCAGTTTTTTGGCAACATCATGCGGCATCATTCAAATCAATACACATTAGAGCGACTGAAAGATAGATCTCACGATTCCCCTGAGCAGGTATGTTTTCATAATGATTGTTATGTTGGAGATCATGATAATTTTTGCACTTGAACCATCTTTTCTATATTTTACGAGTTATAATAATTTTTGCACTTGAACCATCTTTTCTATATTTTACCAGTTATAGTACCAATAATTGATAAGTATTTCTAGATTTTACCAGTTTTGACTCAAATATTGAGCATTTTGTTTTCTGTGTATTTTTTTGAGGTCTTATTTTCCTTCCTCTTAAAGCCATACCCGGCTGCATGTGTCTTTGGCTTTCTTACTTCACCATCCTTAAGGGTTCAACATTTTTTATTAAATTTTATAATGGCCGCCACTTTTTCATTATTAGTTCCATTGTACCTTTATGCATTATCTTTAAAATCCCTAGTTCCATTGTTATAATTTTTACAAATTGTTGCTTTCCTGCCATATAAAAGCTGACTTACAAGTTGAATATGTCTTGTTGCTGCACCCAAATTTGAATGTTGAACCTAAAATTCAATAGACCACGACTGATAATTGTCTGATGCATAATCTCTTAGATTTAGCAAAGCCATCTTCTAATATTACTTTCTGCTGCCAATTATTTTTTACGCTTCCTACTATGTGCTTGTGGCTGATGATGGGATTTACATGATTTTCAAAGTCAATTAGTTAAAAAAATCTTAATTAATATTCTGCTTTTATTGATGATCCTACTATGTTTTTCTAACCGTAACTTTTGGCATCACAGAGGCTAGTCCAAGTAACTCTCCAGCACCCTATGTATCCAATGGATTATTCGTTGCCATCTATTGATAAGGTTTGTTATGATTAACTCTGATCTCCTATTTTCTGGTCAGCCTATGTGCATTCAAAATGGTAACCAGTCCTTGTTGAATTTATAGACACACTGCCTAATGTGAACTTCTTGACTTGTGAAATAGTCATAAATATGTCAAGGATAAAAAGTGCCTCGAGAAAAATAGAATATAACAGAATGCTTCAGAAAATAACACAGAAAAAAGTGGACCTTAAAAAAAACATGGTCTTTTTTTTTTTGAAGGATAACATGGTCTTTTTTTTAAAAAAGCTAAAAAAAACATGGTCTTATTTTCTTTAATAAAGCTTATGGCAATTATTGATATTTCATTGCTCATATTTTCAGTGCTTGAAAATGAAATGGTTCAGAAAAATTGAAATTACTTTTTCGTACGGATGCATAAACATCTCGATATATAAATTAGTCACTCGTGCTTTTGCTATTGCTTTTAATAAGAAATGTATAATAAAATGAGCATGTCAATATGCACCTTTTTTATTGCAGTGCACATATAAAAAAGCGCCACCATTGTCTGTGGATGAAATTTATCAAACCCTTATTTTTTTTTCAGGAATTTTAGATGCTGTTATTATCCACTGTATTCCATATCTATAGATTTTTTTTTTCATCTCAAAACTATTGATGTTTTAGAATTCATGTCTAATTAGTGTCTTTTTTTTCAACTGTAGCCTCTGTTAGGAGAGAGGCCTTAGCAATCTATAATGCAATTAACAATAAATATTAGGAAAATGGGAAATTAAATGAGGATATTTTAGTCCAAAGATATACAATTTATTATTTTTTGATCTGTGTGTTACCTCTTAAATATTGATAGATATGGAATGGTAGGAGTAGTTTATTAATATTGATAGATATTGCATGAGCTTTATTTTATTTTGAAATATGCTACTGTCATTGTCCTTGATTTCTCAATTGGTCATGTTAGAATTGAGTTTTTTATTATCCTTACACCTTTTACTATATGATTTGCTTTAGTTAATTTATTTAGTGATGGTCTGCTACAGTTTATAAGCATTCGGGTTCTGTAAATTATTAGTCATACAAGGCTTTTGCTTATCAATTATTTATGTCACTTTTTTGCTGTGGAAAATGAAGGGATGGTTAGTGATAAACCTTAAGAAAAAGGCCAAAGGGATAAGATCTACCACAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCTTTGGTCAAAGTCTGTGTTGTAGATCACAATTTAGAGGTAATGTAATTTAATGATGGTTCTTCCTTTTACTCGGTGACTCGTCATTCCCCTTCTTCCCTACCTGCCCAAAGATTGAGGCATTGCGCTTCTGTTCAAACGAAACAATTTCTTTTCGGGGTGTAGATAGATGATTTCAGAACTTTTCAGGTCAAATTACACAAACTTGTTAAACCGGAGAAAGCAATCAAAGACTACAAAACAGAGATTACTGGTGTCTCTGCTCAAGATCTAGAGACAGTGACTTGCTCCTTAGCTGATATACAGGTAATTTTGTGTTTCATTTTGTAGTTTTCCTTTATCTTCCTTTCAAATGCTTAATGAAGGAGTGTGTTGTACTATTGTAGAAATCGATGAAGAAGTTGTTATCCAATGGAACCATATTAGTTGGACACAGTTTATATAATGATCTACGTGGTAAGTGTCGTGAACATTTTGTTTGGCTGTCTTTGAATGGCCTACTGCTAATTTCGTTGTAGATGAAGAGCATTCCGTTGTGTTATTTTTCCTGGTTTCATTTTGTTTACTAATTGCATTCATTTGCAGTGCTGAAGCTTGATTATGTTAGAGTGGTCGACACTGCATACATCTTCCAACCCTTGGATGGCTCTATTCACAGGAGACCTTCGTTGAATAGTTTGTGTCAGGCAAGTAGCAAATTATTTACCCGCAATGCGAATATTATGATTCTGTATTACGCATCATCTACTTTATGAATTATCAGTATGAGTTGTGGTCATATGGTTATTCCTTTGGAGGAATTTCGTTACACTCTGTTATTTTGAATGATGAAGTCTGTTTATTGTACATCTGTGCTTGTCTGCGCTTTGGAATTTAAAACATTACACCATACAAATACAAACTCACAAGCAAATTACGGAGGTAAGATAAATGAAAGATGGATGTAGCACATACTGATTGAAAATTCACTGCTTATCTTTGTAACAGTCTGTTTTGGGCTATGAAGTTCGGAAAAAGGGTGCTTCGCATGATTGTCTAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTAACATTGGTTCAAGAGCCTGTAAGTCATTGTATTGTATACTTTTTTCAGTACCGGGTTGTAGTTATACAGTTAAACTGGTTGGTAACTATTGTCATCACTGTTTGCTGTTCTCTCATTTTAGGTTTCAGAAAGTGAGATGGCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACACTGAAGCACTACACGAAATTGTTCCTGGGGACTTCACAATAGATCGAAAGGTATAGTATATTAGTATGTCCTTTAAGCATCCCACTGTTCTGAGGAAGAGGTTCATCCGTAATTATTGGAATAACATGAATGTCTTCAATTTGAGGACTTTAAAATTTATCCTTCGGTACTCTTGTTGACATTCAGTCACTGCTGGGCTATTTTTCTTGTTTGGGTTCTGATCTATTGTAAAATTTGCTTCAGCCTTCCAGAAACGGTCAAGGAGATAAGTATTCTGCCTTAGCTATTTTTAAGAACCAACGAGAGGCACATGATGCATATGAAAATGTCCAAGGCAGCCAAACAAAGGTACATATACAATATACAATGCTCAATGCCTGCTACTTTGGTATCACGAAATTCGTTTGTTGATTAGCTGAGGGAAAGAAATACATAAATGTGAATTCCATTCACTACCACAATACCTGAATCCATATTTTCTATTTCTATATAAATGTTTATAGGGTTAGAGTTAGACATCTATGTAATTCTCCTTCCAAAATCTGATGGAAAAATAACTTATCCTTATGCCTGTTCAAAAAAACGGATATACTTTTTTCTATACCAAGTTTCTTATCATAAATTGATGTTGTAGTTTTAAACCACTGAAGCATAGTTAATCCCTTTTGGGCTTGCTGCTCCCCCTTTTTTGATCAAACCAGTGTTGTGCATTACTTTGTGTAGGACTCAAATGGGCGTCTGCAGAAACTTGTCACGTGTCGGCTGAGTACGGGCATGAGTGTCAGTTTATTTGTTCGGAAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGAGGGCGAGATGGTTGATGTTCCCGAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAAAGGATGCCTACTTGAAAGAGATTGAAACACTGAATCAACGATTGAAAGAGAGTGAGTTGGAGATTGAATCATTGAGAGAACAGTTGAGGAAAAAGGACTTACAAGTGGATGATTCCAAGGAAGGAAAAGTGGATCATGAAATTGAAAAGGATGCCCACTTGAAAGAGATTGAAGCACTGAACCAACGATTGAAAGAAAGTGAAGCGGAGATTGAATCATCGAGGGAACAGTTGAGAAAAAAGGACTTCGAAATTACTGCTCTGCATAAAATGGTAGCTAACATACAAAAAAGGCAAAAACCTAAAAAGTAG

Protein sequence

>MS.gene27041.t1

MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKYGSGMSDPSKRSHEVLAAFLKTFSTDEDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPMYPMDYSLPSIDKGWLVINLKKKAKGIRSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETVTCSLADIQKSMKKLLSNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMAKLLIHRIPTTVNTEALHEIVPGDFTIDRKPSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVDVPENKKVKMDPEVEKDAYLKEIETLNQRLKESELEIESLREQLRKKDLQVDDSKEGKVDHEIEKDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKRQKPKK