Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81381.t1 | XP_024640147.1 | 98.2 | 672 | 12 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1207.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81381.t1 | Q9LK65 | 78.2 | 570 | 112 | 4 | 85 | 643 | 76 | 644 | 5.0e-226 | 785.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81381.t1 | A0A396HX71 | 98.2 | 672 | 12 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1207.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene81381 | 0.852865 | 3.49E-61 | -1.69E-46 |
| MS.gene049178 | MS.gene81381 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene04917 | MS.gene81381 | 0.847453 | 1.15E-59 | -1.69E-46 |
| MS.gene049378 | MS.gene81381 | 0.875088 | 4.06E-68 | -1.69E-46 |
| MS.gene049382 | MS.gene81381 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene81381 | 0.81105 | 8.50E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene81381 | 0.843537 | 1.32E-58 | -1.69E-46 |
| MS.gene049822 | MS.gene81381 | 0.802588 | 5.22E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene81381 | 0.855821 | 4.88E-62 | -1.69E-46 |
| MS.gene04991 | MS.gene81381 | -0.836541 | 8.81E-57 | -1.69E-46 |
| MS.gene050114 | MS.gene81381 | 0.837932 | 3.88E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene81381 | 0.862132 | 6.29E-64 | -1.69E-46 |
| MS.gene050227 | MS.gene81381 | 0.866275 | 3.21E-65 | -1.69E-46 |
| MS.gene050228 | MS.gene81381 | 0.861274 | 1.15E-63 | -1.69E-46 |
| MS.gene050317 | MS.gene81381 | 0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene81381 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene81381 | -0.873665 | 1.23E-67 | -1.69E-46 |
| MS.gene050629 | MS.gene81381 | -0.84172 | 4.00E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene81381 | 0.815905 | 7.28E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene81381 | 0.818801 | 1.62E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene81381 | 0.818568 | 1.83E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene81381 | 0.893038 | 9.11E-75 | -1.69E-46 |
| MS.gene050763 | MS.gene81381 | 0.894386 | 2.59E-75 | -1.69E-46 |
| MS.gene050824 | MS.gene81381 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene81381 | 0.827026 | 1.96E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene81381 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene81381 | 0.826905 | 2.10E-54 | -1.69E-46 |
| MS.gene051790 | MS.gene81381 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene81381 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene81381 | 0.807829 | 4.17E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene81381 | 0.802712 | 4.92E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene81381 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene81381 | 0.837767 | 4.28E-57 | -1.69E-46 |
| MS.gene052858 | MS.gene81381 | 0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene81381 | 0.804733 | 1.87E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene81381 | 0.804421 | 2.18E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene81381 | 0.811178 | 7.97E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene81381 | 0.822512 | 2.28E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene81381 | 0.845076 | 5.09E-59 | -1.69E-46 |
| MS.gene054379 | MS.gene81381 | 0.882991 | 6.54E-71 | -1.69E-46 |
| MS.gene054468 | MS.gene81381 | 0.822035 | 2.94E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene81381 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene81381 | 0.851005 | 1.18E-60 | -1.69E-46 |
| MS.gene054942 | MS.gene81381 | 0.815869 | 7.41E-52 | -1.69E-46 |
| MS.gene055816 | MS.gene81381 | -0.83091 | 2.25E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene81381 | -0.81155 | 6.62E-51 | -1.69E-46 |
| MS.gene056400 | MS.gene81381 | 0.844261 | 8.44E-59 | -1.69E-46 |
| MS.gene056552 | MS.gene81381 | 0.832101 | 1.15E-55 | -1.69E-46 |
| MS.gene056875 | MS.gene81381 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene81381 | 0.813549 | 2.42E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene81381 | 0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene81381 | 0.807609 | 4.65E-50 | -1.69E-46 |
| MS.gene057665 | MS.gene81381 | 0.845777 | 3.29E-59 | -1.69E-46 |
| MS.gene057929 | MS.gene81381 | 0.822407 | 2.41E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene81381 | 0.839651 | 1.39E-57 | -1.69E-46 |
| MS.gene058503 | MS.gene81381 | 0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene81381 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene058639 | MS.gene81381 | 0.809153 | 2.18E-50 | -1.69E-46 |
| MS.gene058661 | MS.gene81381 | -0.822187 | 2.71E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene81381 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene059018 | MS.gene81381 | 0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene059033 | MS.gene81381 | -0.809221 | 2.11E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene81381 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene059719 | MS.gene81381 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene81381 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene81381 | 0.808783 | 2.61E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene81381 | 0.840831 | 6.86E-58 | -1.69E-46 |
| MS.gene060404 | MS.gene81381 | 0.833631 | 4.77E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene81381 | 0.844604 | 6.82E-59 | -1.69E-46 |
| MS.gene060683 | MS.gene81381 | 0.821457 | 4.00E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene81381 | 0.812201 | 4.78E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene81381 | 0.836496 | 9.04E-57 | -1.69E-46 |
| MS.gene060870 | MS.gene81381 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene060940 | MS.gene81381 | 0.800782 | 1.23E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene81381 | 0.816546 | 5.23E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81381.t1 | MTR_5g094740 | 98.206 | 669 | 12 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1345 |
| MS.gene81381.t1 | MTR_2g010520 | 25.954 | 262 | 163 | 10 | 220 | 471 | 72 | 312 | 1.91e-11 | 66.2 |
| MS.gene81381.t1 | MTR_2g010520 | 25.954 | 262 | 163 | 10 | 220 | 471 | 72 | 312 | 2.60e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81381.t1 | AT1G55930 | 68.493 | 657 | 181 | 11 | 1 | 649 | 1 | 639 | 0.0 | 875 |
| MS.gene81381.t1 | AT3G13070 | 76.316 | 570 | 123 | 4 | 85 | 643 | 76 | 644 | 0.0 | 850 |
| MS.gene81381.t1 | AT1G55930 | 69.833 | 600 | 156 | 10 | 1 | 592 | 1 | 583 | 0.0 | 816 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATTCTTCGTTTGTTTA+AGG | 0.144682 | 5.2:-79906421 | MS.gene81381:CDS |
| CTTAAATTGCTTGGCTTAAA+AGG | 0.171364 | 5.2:-79903906 | MS.gene81381:CDS |
| GTTTCTTCTCTTTCGGTTCC+TGG | 0.217823 | 5.2:+79899947 | None:intergenic |
| TTCCTCACAACCATACTTAT+TGG | 0.242888 | 5.2:-79905221 | MS.gene81381:CDS |
| ATTGTTATTGGCTTTGCTTT+TGG | 0.245514 | 5.2:-79906391 | MS.gene81381:CDS |
| CCTTCAGTAGCCAAAACTTT+AGG | 0.245516 | 5.2:+79906516 | None:intergenic |
| GAGAATGCCAATGAAGGTTT+TGG | 0.249627 | 5.2:-79906811 | MS.gene81381:CDS |
| ATGTCTTCATGTGGTCTCTT+TGG | 0.269483 | 5.2:+79899590 | None:intergenic |
| AAAATATGTTTCTTCTCTTT+CGG | 0.292690 | 5.2:+79899940 | None:intergenic |
| GACACTCGAATCAGGGGTTC+TGG | 0.292964 | 5.2:-79906895 | MS.gene81381:CDS |
| TAAGGAACAAGGATTGTTAT+TGG | 0.294468 | 5.2:-79906403 | MS.gene81381:CDS |
| CTTCAGTAGCCAAAACTTTA+GGG | 0.296810 | 5.2:+79906517 | None:intergenic |
| GTTTGTGGGGTGTTGGTGTT+TGG | 0.313415 | 5.2:-79906543 | MS.gene81381:CDS |
| CCTTTCAAGAACTAACTTGA+TGG | 0.314069 | 5.2:+79900008 | None:intergenic |
| AATGCTGGATATGGTGTTAT+TGG | 0.317649 | 5.2:-79906486 | MS.gene81381:CDS |
| AGCTTTCATCTTTCAAGTTA+TGG | 0.321638 | 5.2:-79906726 | MS.gene81381:CDS |
| GCAACGTGTTGATAATATAA+TGG | 0.324648 | 5.2:-79901881 | MS.gene81381:CDS |
| AATTGTTACCTTTCTTTCAA+TGG | 0.330333 | 5.2:-79903934 | MS.gene81381:CDS |
| GTTTGGATGCCCTAAAGTTT+TGG | 0.332563 | 5.2:-79906526 | MS.gene81381:CDS |
| CACCAATATGAGACGGTATC+AGG | 0.333419 | 5.2:-79900075 | MS.gene81381:CDS |
| GAAGTTTACAAATGAAGTTT+TGG | 0.355145 | 5.2:-79906595 | MS.gene81381:CDS |
| AAGTATCACAGTTGGAGATT+TGG | 0.355313 | 5.2:-79901709 | MS.gene81381:CDS |
| ATTGTTACCTTTCTTTCAAT+GGG | 0.363607 | 5.2:-79903933 | MS.gene81381:CDS |
| ATACGTTGTGCCAATAAGTA+TGG | 0.364028 | 5.2:+79905211 | None:intergenic |
| AGCTCCTCTTCAGTTACATA+TGG | 0.364332 | 5.2:+79902512 | None:intergenic |
| ATCTTGGCTGCTACTGTTTG+TGG | 0.365181 | 5.2:-79906558 | MS.gene81381:CDS |
| CGGTTCCTGGTGGTCACCAT+TGG | 0.365554 | 5.2:+79899960 | None:intergenic |
| GGCTTTGTATGTGAAGCCTT+TGG | 0.366515 | 5.2:-79900054 | MS.gene81381:CDS |
| TTTGTACCCAAAACCTTCAT+TGG | 0.380761 | 5.2:+79906804 | None:intergenic |
| TTAGCAATGACACTCGAATC+AGG | 0.381702 | 5.2:-79906903 | None:intergenic |
| TCTTGGCTGCTACTGTTTGT+GGG | 0.383049 | 5.2:-79906557 | MS.gene81381:CDS |
| TTGATGGTTTCTCCTGTCCT+TGG | 0.385943 | 5.2:+79900024 | None:intergenic |
| TTGCAGATTCAATGTCTGTT+TGG | 0.392142 | 5.2:-79901577 | MS.gene81381:intron |
| GCCAGTGGCATGGCTTTCTC+TGG | 0.399023 | 5.2:-79903976 | MS.gene81381:CDS |
| TTCTTAGAGAATTTCGAATC+AGG | 0.399483 | 5.2:-79901550 | MS.gene81381:CDS |
| TGCTACTGTTTGTGGGGTGT+TGG | 0.407645 | 5.2:-79906550 | MS.gene81381:CDS |
| ACTGCAGCATTCGGCGAAGC+TGG | 0.410977 | 5.2:-79905060 | MS.gene81381:CDS |
| CAACGTGTTGATAATATAAT+GGG | 0.420023 | 5.2:-79901880 | MS.gene81381:CDS |
| CACAGAAGTGGCTCGGTTTG+TGG | 0.421207 | 5.2:-79904154 | MS.gene81381:intron |
| GATTTCAGTGAGAAGCAAAA+TGG | 0.423188 | 5.2:+79904206 | None:intergenic |
| AGCAATAGAAGAGGAAGAAC+AGG | 0.424068 | 5.2:-79902456 | MS.gene81381:intron |
| TAATGAATATGTAGTTGATC+AGG | 0.426174 | 5.2:-79899564 | MS.gene81381:CDS |
| AAGCATCCCCATTGAAAGAA+AGG | 0.428833 | 5.2:+79903926 | None:intergenic |
| GCTGGTGTCAGCGCAGCAAC+AGG | 0.434643 | 5.2:-79905042 | MS.gene81381:CDS |
| AGCCTGATACCGTCTCATAT+TGG | 0.438335 | 5.2:+79900073 | None:intergenic |
| AGCATATGCGATGGATCTGC+TGG | 0.441250 | 5.2:-79901854 | MS.gene81381:CDS |
| GGTTCGTGAGTTGGCTGAAA+AGG | 0.443988 | 5.2:-79905291 | MS.gene81381:CDS |
| GGTGTGGTGAATGCTGGATA+TGG | 0.447491 | 5.2:-79906495 | MS.gene81381:CDS |
| GCTGAAAAGGAGTCTGAAAA+TGG | 0.450196 | 5.2:-79905278 | MS.gene81381:CDS |
| ATGGGGATGCTTAAATTGCT+TGG | 0.451732 | 5.2:-79903915 | MS.gene81381:CDS |
| ACTGAAGGTGTGGTGAATGC+TGG | 0.457072 | 5.2:-79906501 | MS.gene81381:CDS |
| GAAGCTGCAACTGCAGCATT+CGG | 0.461207 | 5.2:-79905069 | MS.gene81381:CDS |
| CAGTTGGACACAATAGGAAA+AGG | 0.462993 | 5.2:+79906771 | None:intergenic |
| ATGAGTATGGTGGAACTGTT+GGG | 0.464601 | 5.2:-79901502 | MS.gene81381:CDS |
| GGTGAAGAGAGGAATTATCT+TGG | 0.464775 | 5.2:-79906574 | MS.gene81381:CDS |
| ACACTCGAATCAGGGGTTCT+GGG | 0.470559 | 5.2:-79906894 | MS.gene81381:CDS |
| CTTCGTTTGTTTAAGGAACA+AGG | 0.470581 | 5.2:-79906414 | MS.gene81381:CDS |
| AGCTTGAAGGTGAAGTGTAT+TGG | 0.479042 | 5.2:-79906675 | MS.gene81381:CDS |
| TTTGTACGATTCTCATGCAC+AGG | 0.480881 | 5.2:+79906834 | None:intergenic |
| CCATCAAGTTAGTTCTTGAA+AGG | 0.481575 | 5.2:-79900008 | MS.gene81381:CDS |
| CCAACACAGTTGGACACAAT+AGG | 0.482123 | 5.2:+79906765 | None:intergenic |
| CATCAAGTTAGTTCTTGAAA+GGG | 0.483658 | 5.2:-79900007 | MS.gene81381:CDS |
| GCTGTCGTTCTTAATGAGTA+TGG | 0.485683 | 5.2:-79901515 | MS.gene81381:CDS |
| AAATATTGCAGCAACTGCTC+TGG | 0.490255 | 5.2:-79905097 | MS.gene81381:CDS |
| CGAGAAAGGTGAGTGCTGTT+CGG | 0.496101 | 5.2:-79899748 | MS.gene81381:CDS |
| CGATTACTACACTTTGGCCT+TGG | 0.498418 | 5.2:-79906335 | MS.gene81381:CDS |
| CCTATTGTGTCCAACTGTGT+TGG | 0.498989 | 5.2:-79906765 | MS.gene81381:CDS |
| AGCTCGCATTACTATGTAGC+CGG | 0.504772 | 5.2:+79900397 | None:intergenic |
| AGACTTCGATTACTACACTT+TGG | 0.504973 | 5.2:-79906341 | MS.gene81381:CDS |
| GATGTTGTTGAGGAAATTGT+TGG | 0.507415 | 5.2:-79900710 | MS.gene81381:CDS |
| GTCTTCTGAGAGTTGATCAA+TGG | 0.508494 | 5.2:+79900343 | None:intergenic |
| TACTACACTTTGGCCTTGGA+AGG | 0.509755 | 5.2:-79906331 | MS.gene81381:intron |
| GAGGAAATACAAAAGAAAAC+CGG | 0.512173 | 5.2:-79900416 | MS.gene81381:CDS |
| AAGGTAACAATTCTTCCTGC+AGG | 0.515803 | 5.2:+79903945 | None:intergenic |
| AGGAGCTAAAACTGATGCTA+AGG | 0.517603 | 5.2:-79902496 | MS.gene81381:CDS |
| TCTTTGACGCAGATACTAGC+AGG | 0.519145 | 5.2:-79899776 | MS.gene81381:intron |
| TGTAAACTTCAAATTAGCAT+CGG | 0.521085 | 5.2:+79906608 | None:intergenic |
| TACAAAGAGAATGCCAATGA+AGG | 0.521281 | 5.2:-79906817 | MS.gene81381:CDS |
| AATGAGTATGGTGGAACTGT+TGG | 0.522457 | 5.2:-79901503 | MS.gene81381:CDS |
| AGTTGGTGGAGCTAGCTTGA+AGG | 0.527234 | 5.2:-79906688 | MS.gene81381:CDS |
| ACTCTAGAAAGTATCACAGT+TGG | 0.529514 | 5.2:-79901717 | MS.gene81381:CDS |
| GAAGATGAGGCAGAGTATGA+TGG | 0.530442 | 5.2:-79899623 | MS.gene81381:CDS |
| TTTGGATACATTCCAAGGAC+AGG | 0.534270 | 5.2:-79900036 | MS.gene81381:CDS |
| AGTTGGACACAATAGGAAAA+GGG | 0.534542 | 5.2:+79906772 | None:intergenic |
| ACTAGCAGGAAATGCGAGAA+AGG | 0.534984 | 5.2:-79899762 | MS.gene81381:CDS |
| TCTAGGTCAGGCCAGTGGCA+TGG | 0.538250 | 5.2:-79903986 | MS.gene81381:intron |
| ACATAGTGGCGACGAAATGT+TGG | 0.539038 | 5.2:-79899714 | MS.gene81381:CDS |
| TAGCAATGACACTCGAATCA+GGG | 0.545433 | 5.2:-79906902 | None:intergenic |
| CTTGGCTGCTACTGTTTGTG+GGG | 0.549440 | 5.2:-79906556 | MS.gene81381:CDS |
| GGATATGATCGAAAATGTGT+TGG | 0.552369 | 5.2:-79902115 | MS.gene81381:CDS |
| AATAAGCATGATACCTTCCA+AGG | 0.560169 | 5.2:+79906318 | None:intergenic |
| ACCAGAGAAAGCCATGCCAC+TGG | 0.561580 | 5.2:+79903975 | None:intergenic |
| TTACCAGGTACAAAATATGC+AGG | 0.563099 | 5.2:+79901678 | None:intergenic |
| TGCTTGGCTTAAAAGGAAGT+AGG | 0.566558 | 5.2:-79903899 | MS.gene81381:intron |
| ATTGAAAGGGCCAACACAGT+TGG | 0.567652 | 5.2:+79906755 | None:intergenic |
| CTAAGGGGTGCAGAATTAAG+TGG | 0.568729 | 5.2:-79902479 | MS.gene81381:CDS |
| CGCAGCAACAGGAGTGATGA+CGG | 0.569783 | 5.2:-79905031 | MS.gene81381:intron |
| TCTCTGGTACTGTATCCTGC+AGG | 0.575131 | 5.2:-79903960 | MS.gene81381:CDS |
| TGACACCAATGGTGACCACC+AGG | 0.580712 | 5.2:-79899965 | MS.gene81381:CDS |
| GGAGCTAAAACTGATGCTAA+GGG | 0.580822 | 5.2:-79902495 | MS.gene81381:CDS |
| AAGGTGAAGTGTATTGGTAG+TGG | 0.586954 | 5.2:-79906669 | MS.gene81381:CDS |
| GGTTCATAATGCCACAGAAG+TGG | 0.592771 | 5.2:-79904166 | MS.gene81381:CDS |
| CTACATAGTAATGCGAGCTG+AGG | 0.595387 | 5.2:-79900393 | MS.gene81381:CDS |
| CGGTGAGGAATCTGAAGATG+AGG | 0.596245 | 5.2:-79899636 | MS.gene81381:CDS |
| TAGAGAATTTCGAATCAGGA+AGG | 0.597594 | 5.2:-79901546 | MS.gene81381:CDS |
| TCTGCTGGATTATGTCCAAA+AGG | 0.598511 | 5.2:-79901839 | MS.gene81381:intron |
| ATTAAGTGGAGCAATAGAAG+AGG | 0.604158 | 5.2:-79902465 | MS.gene81381:CDS |
| AAGCCTTTGGATACATTCCA+AGG | 0.604313 | 5.2:-79900041 | MS.gene81381:CDS |
| ATTCGATGAAAATGACTCGA+AGG | 0.605810 | 5.2:-79900681 | MS.gene81381:intron |
| TGAGCCATATGTAACTGAAG+AGG | 0.606858 | 5.2:-79902516 | MS.gene81381:CDS |
| ATAATGCCACAGAAGTGGCT+CGG | 0.609038 | 5.2:-79904161 | MS.gene81381:CDS |
| AATGGGTATAGCATATGCGA+TGG | 0.610921 | 5.2:-79901863 | MS.gene81381:CDS |
| AGCAATGACACTCGAATCAG+GGG | 0.613707 | 5.2:-79906901 | None:intergenic |
| TCATTAGAAATGTCTTCATG+TGG | 0.617541 | 5.2:+79899581 | None:intergenic |
| GCTTAAGAGTACTTGGCCGA+CGG | 0.617799 | 5.2:-79906448 | MS.gene81381:CDS |
| CGGTTTGAAAGACTACATAG+TGG | 0.625252 | 5.2:-79899728 | MS.gene81381:CDS |
| GTCGTTCTTAATGAGTATGG+TGG | 0.629139 | 5.2:-79901512 | MS.gene81381:CDS |
| AACTCTTGAAGATGTTGTTG+AGG | 0.632860 | 5.2:-79900720 | MS.gene81381:CDS |
| TCTTCTCTTTCGGTTCCTGG+TGG | 0.632904 | 5.2:+79899950 | None:intergenic |
| ATTGCAACAACATCAACAAG+AGG | 0.634332 | 5.2:+79902057 | None:intergenic |
| TACTCCGAAGTGATGTTACT+CGG | 0.634521 | 5.2:-79905244 | MS.gene81381:CDS |
| TACATAGTAATGCGAGCTGA+GGG | 0.634796 | 5.2:-79900392 | MS.gene81381:CDS |
| TCGAATCAGGAAGGTTCACA+TGG | 0.635122 | 5.2:-79901537 | MS.gene81381:CDS |
| TGTCCTTGGAATGTATCCAA+AGG | 0.638487 | 5.2:+79900038 | None:intergenic |
| GGGTTACACATCAATACTCA+AGG | 0.641002 | 5.2:-79901996 | MS.gene81381:intron |
| TGCCAATAAGTATGGTTGTG+AGG | 0.646643 | 5.2:+79905219 | None:intergenic |
| CACAAACCGAGCCACTTCTG+TGG | 0.647516 | 5.2:+79904155 | None:intergenic |
| ACAAGTGATGAAAATCTACA+AGG | 0.660380 | 5.2:+79902019 | None:intergenic |
| TTGTTACCTTTCTTTCAATG+GGG | 0.663367 | 5.2:-79903932 | MS.gene81381:CDS |
| TCAGGGTCACCAATATGAGA+CGG | 0.666733 | 5.2:-79900082 | MS.gene81381:intron |
| CGAAGAATTTGCAACACCGT+CGG | 0.668231 | 5.2:+79906432 | None:intergenic |
| AAGAAAATGGAACAGCGGTG+AGG | 0.668773 | 5.2:-79899651 | MS.gene81381:CDS |
| GAGCTAAAACTGATGCTAAG+GGG | 0.682892 | 5.2:-79902494 | MS.gene81381:CDS |
| TTGTACGATTCTCATGCACA+GGG | 0.692351 | 5.2:+79906835 | None:intergenic |
| ATGACTCTAGGTCAGGCCAG+TGG | 0.700216 | 5.2:-79903991 | MS.gene81381:intron |
| GTGAAAAGAAAATGGAACAG+CGG | 0.706107 | 5.2:-79899656 | MS.gene81381:CDS |
| GATGACGACGATGACACCAA+TGG | 0.713116 | 5.2:-79899976 | MS.gene81381:CDS |
| TGAGTATGGTGGAACTGTTG+GGG | 0.713650 | 5.2:-79901501 | MS.gene81381:intron |
| CTTGAACATCAAGATGCCAG+AGG | 0.714743 | 5.2:-79900321 | MS.gene81381:intron |
| GGAACCGAGTAACATCACTT+CGG | 0.717695 | 5.2:+79905240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 79899541 | 79906919 | 79899541 | ID=MS.gene81381 |
| chr5.2 | mRNA | 79899541 | 79906919 | 79899541 | ID=MS.gene81381.t1;Parent=MS.gene81381 |
| chr5.2 | exon | 79906332 | 79906919 | 79906332 | ID=MS.gene81381.t1.exon1;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79906332 | 79906919 | 79906332 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79905215 | 79905312 | 79905215 | ID=MS.gene81381.t1.exon2;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79905215 | 79905312 | 79905215 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79905032 | 79905125 | 79905032 | ID=MS.gene81381.t1.exon3;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79905032 | 79905125 | 79905032 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79904155 | 79904232 | 79904155 | ID=MS.gene81381.t1.exon4;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79904155 | 79904232 | 79904155 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79903900 | 79904003 | 79903900 | ID=MS.gene81381.t1.exon5;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79903900 | 79904003 | 79903900 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79902457 | 79902538 | 79902457 | ID=MS.gene81381.t1.exon6;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79902457 | 79902538 | 79902457 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79901997 | 79902136 | 79901997 | ID=MS.gene81381.t1.exon7;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79901997 | 79902136 | 79901997 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79901840 | 79901918 | 79901840 | ID=MS.gene81381.t1.exon8;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79901840 | 79901918 | 79901840 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79901682 | 79901745 | 79901682 | ID=MS.gene81381.t1.exon9;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79901682 | 79901745 | 79901682 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79901502 | 79901593 | 79901502 | ID=MS.gene81381.t1.exon10;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79901502 | 79901593 | 79901502 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79900682 | 79900747 | 79900682 | ID=MS.gene81381.t1.exon11;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79900682 | 79900747 | 79900682 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79900322 | 79900438 | 79900322 | ID=MS.gene81381.t1.exon12;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79900322 | 79900438 | 79900322 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79899930 | 79900100 | 79899930 | ID=MS.gene81381.t1.exon13;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79899930 | 79900100 | 79899930 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| chr5.2 | exon | 79899541 | 79899786 | 79899541 | ID=MS.gene81381.t1.exon14;Parent=MS.gene81381.t1 |
| chr5.2 | CDS | 79899541 | 79899786 | 79899541 | ID=cds.MS.gene81381.t1;Parent=MS.gene81381.t1 |
| Gene Sequence |
| Protein sequence |
