AlfalfaGEDB | MS.gene062564

M. sativa cultivar XinJiangDaYe / MS.gene062564

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062564.t1	XP_003606419.2	96.9	451	12	1	3	453	47	495	4.20E-252	880.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062564.t1	Q700D2	54.5	323	113	9	9	302	68	385	1.2e-82	308.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062564.t1	G7JPG1	96.9	451	12	1	3	453	47	495	3.0e-252	880.2

TFs/TRs:

Gene ID	Type	Classification
MS.gene062564.t1	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene062564	0.824562	7.55E-54	-1.69E-46
MS.gene049230	MS.gene062564	0.808091	3.67E-50	-1.69E-46
MS.gene049378	MS.gene062564	0.839804	1.27E-57	-1.69E-46
MS.gene04984	MS.gene062564	0.81096	8.89E-51	-1.69E-46
MS.gene050226	MS.gene062564	0.865109	7.50E-65	-1.69E-46
MS.gene050227	MS.gene062564	0.86321	2.93E-64	-1.69E-46
MS.gene050228	MS.gene062564	0.869076	4.06E-66	-1.69E-46
MS.gene050442	MS.gene062564	0.830236	3.29E-55	-1.69E-46
MS.gene050623	MS.gene062564	-0.870357	1.55E-66	-1.69E-46
MS.gene050642	MS.gene062564	0.800596	1.34E-48	-1.69E-46
MS.gene050719	MS.gene062564	0.855108	7.87E-62	-1.69E-46
MS.gene050721	MS.gene062564	0.856835	2.46E-62	-1.69E-46
MS.gene050724	MS.gene062564	0.849999	2.25E-60	-1.69E-46
MS.gene050759	MS.gene062564	0.804564	2.03E-49	-1.69E-46
MS.gene050762	MS.gene062564	0.819795	9.63E-53	-1.69E-46
MS.gene050763	MS.gene062564	0.820755	5.80E-53	-1.69E-46
MS.gene050780	MS.gene062564	0.846239	2.46E-59	-1.69E-46
MS.gene050826	MS.gene062564	0.809935	1.48E-50	-1.69E-46
MS.gene051210	MS.gene062564	0.810422	1.16E-50	-1.69E-46
MS.gene051452	MS.gene062564	0.811439	7.00E-51	-1.69E-46
MS.gene051490	MS.gene062564	0.804089	2.55E-49	-1.69E-46
MS.gene051757	MS.gene062564	0.801825	7.50E-49	-1.69E-46
MS.gene051790	MS.gene062564	0.811462	6.92E-51	-1.69E-46
MS.gene052012	MS.gene062564	0.855099	7.92E-62	-1.69E-46
MS.gene05215	MS.gene062564	0.803852	2.86E-49	-1.69E-46
MS.gene052176	MS.gene062564	0.815797	7.69E-52	-1.69E-46
MS.gene052384	MS.gene062564	0.823859	1.10E-53	-1.69E-46
MS.gene052426	MS.gene062564	0.815247	1.02E-51	-1.69E-46
MS.gene052896	MS.gene062564	0.810546	1.09E-50	-1.69E-46
MS.gene053008	MS.gene062564	0.804309	2.30E-49	-1.69E-46
MS.gene053641	MS.gene062564	0.814256	1.69E-51	-1.69E-46
MS.gene053811	MS.gene062564	0.826591	2.49E-54	-1.69E-46
MS.gene054236	MS.gene062564	0.806921	6.50E-50	-1.69E-46
MS.gene054379	MS.gene062564	0.825308	5.03E-54	-1.69E-46
MS.gene054467	MS.gene062564	0.809291	2.03E-50	-1.69E-46
MS.gene054468	MS.gene062564	0.83083	2.35E-55	-1.69E-46
MS.gene054576	MS.gene062564	0.801735	7.83E-49	-1.69E-46
MS.gene054658	MS.gene062564	0.802941	4.42E-49	-1.69E-46
MS.gene05468	MS.gene062564	0.821514	3.88E-53	-1.69E-46
MS.gene054930	MS.gene062564	0.809272	2.05E-50	-1.69E-46
MS.gene05510	MS.gene062564	0.806863	6.69E-50	-1.69E-46
MS.gene055222	MS.gene062564	0.816174	6.34E-52	-1.69E-46
MS.gene055701	MS.gene062564	0.84224	2.92E-58	-1.69E-46
MS.gene055926	MS.gene062564	0.823608	1.26E-53	-1.69E-46
MS.gene056506	MS.gene062564	0.832315	1.01E-55	-1.69E-46
MS.gene056552	MS.gene062564	0.821869	3.21E-53	-1.69E-46
MS.gene057026	MS.gene062564	0.805853	1.09E-49	-1.69E-46
MS.gene057140	MS.gene062564	0.812582	3.94E-51	-1.69E-46
MS.gene057360	MS.gene062564	0.801663	8.10E-49	-1.69E-46
MS.gene05761	MS.gene062564	0.83471	2.56E-56	-1.69E-46
MS.gene058084	MS.gene062564	0.814025	1.90E-51	-1.69E-46
MS.gene058146	MS.gene062564	0.815588	8.56E-52	-1.69E-46
MS.gene058399	MS.gene062564	0.812665	3.78E-51	-1.69E-46
MS.gene058548	MS.gene062564	0.800448	1.43E-48	-1.69E-46
MS.gene058595	MS.gene062564	0.807772	4.29E-50	-1.69E-46
MS.gene059249	MS.gene062564	0.819069	1.41E-52	-1.69E-46
MS.gene059283	MS.gene062564	0.812537	4.03E-51	-1.69E-46
MS.gene059609	MS.gene062564	0.809813	1.57E-50	-1.69E-46
MS.gene060084	MS.gene062564	0.814066	1.86E-51	-1.69E-46
MS.gene060637	MS.gene062564	0.830715	2.51E-55	-1.69E-46
MS.gene060683	MS.gene062564	0.834222	3.40E-56	-1.69E-46
MS.gene060685	MS.gene062564	0.83141	1.70E-55	-1.69E-46
MS.gene060802	MS.gene062564	0.844815	5.98E-59	-1.69E-46
MS.gene060803	MS.gene062564	0.843836	1.10E-58	-1.69E-46
MS.gene060869	MS.gene062564	0.802127	6.50E-49	-1.69E-46
MS.gene060870	MS.gene062564	0.817471	3.24E-52	-1.69E-46
MS.gene060998	MS.gene062564	0.835613	1.51E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062564.t1	MTR_4g059870	96.896	451	12	1	3	453	47	495	0.0	914
MS.gene062564.t1	MTR_2g093960	56.160	349	108	13	3	326	41	369	1.42e-119	355
MS.gene062564.t1	MTR_2g099990	42.521	468	190	15	2	451	54	460	1.22e-103	317
MS.gene062564.t1	MTR_8g017210	85.535	159	22	1	2	160	70	227	1.06e-101	313
MS.gene062564.t1	MTR_1g094115	40.777	515	202	17	3	452	56	532	1.72e-100	311
MS.gene062564.t1	MTR_2g090745	50.888	338	110	10	4	303	17	336	2.24e-98	301
MS.gene062564.t1	MTR_1g016010	76.023	171	41	0	2	172	49	219	8.34e-98	301
MS.gene062564.t1	MTR_1g112270	74.269	171	41	2	3	173	53	220	1.94e-95	298
MS.gene062564.t1	MTR_1g112270	74.556	169	40	2	5	173	66	231	5.22e-94	295
MS.gene062564.t1	MTR_2g099990	41.593	452	185	15	18	451	1	391	3.27e-93	287
MS.gene062564.t1	MTR_1g094115	39.516	496	197	17	22	452	58	515	8.21e-88	277
MS.gene062564.t1	MTR_2g017720	76.724	116	21	2	4	119	323	432	7.19e-55	189
MS.gene062564.t1	MTR_3g102000	77.647	85	15	2	32	116	51	131	1.78e-37	137
MS.gene062564.t1	MTR_5g030560	80.000	45	9	0	4	48	16	60	2.34e-21	88.2
MS.gene062564.t1	MTR_1g093095	34.507	142	81	4	17	147	109	249	1.18e-19	89.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062564.t1	AT3G45260	79.290	169	35	0	2	170	47	215	1.59e-104	318
MS.gene062564.t1	AT3G45260	79.290	169	35	0	2	170	47	215	1.59e-104	318
MS.gene062564.t1	AT1G55110	81.707	164	30	0	2	165	71	234	6.78e-102	311
MS.gene062564.t1	AT1G55110	81.707	164	30	0	2	165	71	234	6.78e-102	311
MS.gene062564.t1	AT1G55110	81.707	164	30	0	2	165	71	234	6.78e-102	311
MS.gene062564.t1	AT5G03150	82.390	159	28	0	3	161	62	220	8.99e-101	310
MS.gene062564.t1	AT5G60470	77.576	165	37	0	2	166	52	216	1.07e-100	309
MS.gene062564.t1	AT5G60470	77.576	165	37	0	2	166	48	212	1.12e-100	308
MS.gene062564.t1	AT3G50700	83.226	155	25	1	3	157	43	196	5.57e-100	306
MS.gene062564.t1	AT5G66730	84.516	155	23	1	3	157	41	194	7.02e-100	308
MS.gene062564.t1	AT1G03840	82.803	157	26	1	2	158	49	204	2.27e-99	307
MS.gene062564.t1	AT3G13810	81.875	160	29	0	2	161	59	218	3.53e-99	306
MS.gene062564.t1	AT2G02080	40.789	456	188	12	2	416	62	476	4.39e-99	306
MS.gene062564.t1	AT2G02080	40.789	456	188	12	2	416	62	476	4.39e-99	306
MS.gene062564.t1	AT2G02080	40.789	456	188	12	2	416	62	476	4.39e-99	306
MS.gene062564.t1	AT2G02080	40.789	456	188	12	2	416	62	476	4.39e-99	306
MS.gene062564.t1	AT3G13810	81.875	160	29	0	2	161	73	232	5.49e-99	306
MS.gene062564.t1	AT3G13810	81.875	160	29	0	2	161	78	237	5.68e-99	306
MS.gene062564.t1	AT3G13810	81.875	160	29	0	2	161	78	237	5.68e-99	306
MS.gene062564.t1	AT4G02670	81.529	157	29	0	2	158	63	219	1.74e-98	301
MS.gene062564.t1	AT5G44160	81.875	160	28	1	2	161	45	203	1.90e-98	303
MS.gene062564.t1	AT4G02670	81.529	157	29	0	2	158	61	217	1.96e-98	301
MS.gene062564.t1	AT5G60470	77.160	162	37	0	5	166	46	207	2.33e-98	302
MS.gene062564.t1	AT1G14580	78.125	160	34	1	2	161	61	219	5.16e-97	300
MS.gene062564.t1	AT1G14580	78.125	160	34	1	2	161	61	219	5.16e-97	300
MS.gene062564.t1	AT1G14580	78.125	160	34	1	2	161	75	233	8.81e-97	299
MS.gene062564.t1	AT1G03840	81.935	155	27	1	4	158	49	202	9.10e-97	300
MS.gene062564.t1	AT5G44160	81.646	158	28	1	4	161	8	164	9.42e-97	298
MS.gene062564.t1	AT3G13810	81.529	157	29	0	5	161	68	224	3.43e-96	298
MS.gene062564.t1	AT3G13810	81.529	157	29	0	5	161	82	238	4.28e-96	298
MS.gene062564.t1	AT2G02070	73.939	165	38	2	3	163	61	224	9.24e-93	293
MS.gene062564.t1	AT2G02070	73.939	165	38	2	3	163	61	224	9.24e-93	293
MS.gene062564.t1	AT2G02080	39.773	440	183	12	18	416	1	399	7.92e-90	280
MS.gene062564.t1	AT2G02080	39.773	440	183	12	18	416	1	399	7.92e-90	280
MS.gene062564.t1	AT1G68130	61.438	153	58	1	3	154	50	202	2.04e-68	224
MS.gene062564.t1	AT2G01940	62.416	149	55	1	3	150	53	201	6.95e-68	223
MS.gene062564.t1	AT1G25250	62.838	148	53	2	3	148	42	189	1.13e-67	221
MS.gene062564.t1	AT1G25250	62.585	147	53	2	4	148	20	166	1.20e-66	218
MS.gene062564.t1	AT2G01940	61.333	150	56	2	3	150	53	202	5.63e-64	213
MS.gene062564.t1	AT1G68130	61.818	110	41	1	40	148	1	110	4.90e-45	160
MS.gene062564.t1	AT2G01940	61.607	112	42	1	40	150	1	112	9.89e-45	160
MS.gene062564.t1	AT1G25250	62.162	111	40	2	40	148	1	111	1.54e-44	158
MS.gene062564.t1	AT1G34370	33.714	175	103	4	3	164	14	188	2.30e-24	102
MS.gene062564.t1	AT1G34370	33.714	175	103	4	3	164	224	398	7.81e-24	104
MS.gene062564.t1	AT1G34370	33.714	175	103	4	3	164	224	398	7.81e-24	104
MS.gene062564.t1	AT5G22890	33.987	153	88	4	8	147	202	354	9.76e-23	99.8
MS.gene062564.t1	AT1G13290	35.484	155	89	6	17	161	95	248	6.23e-20	90.5
MS.gene062564.t1	AT1G51220	32.317	164	93	5	17	172	172	325	1.25e-19	90.1
MS.gene062564.t1	AT3G20880	35.252	139	81	4	17	147	250	387	8.75e-19	88.6
MS.gene062564.t1	AT1G08290	38.519	135	73	4	22	147	179	312	8.82e-19	87.8
MS.gene062564.t1	AT3G57670	35.252	139	81	4	17	147	211	348	2.83e-18	86.7
MS.gene062564.t1	AT1G34790	36.691	139	79	4	17	147	139	276	3.37e-18	85.5

Find 80 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTGAATAAGTTGGTGAATT+TGG	0.142711	4.3:+42119298	MS.gene062564:CDS
CAAGAACTTGGTGAGTTTAA+TGG	0.196940	4.3:+42119569	MS.gene062564:CDS
TTTCAGTTTCACTCAGAATT+TGG	0.212422	4.3:+42118849	MS.gene062564:CDS
AGATTGAACTGCATATTTCT+TGG	0.249648	4.3:-42118173	None:intergenic
TCAAATTCAAACAATATGTT+TGG	0.277577	4.3:+42119371	MS.gene062564:CDS
GCCGATGAAGCTGCAAATTC+TGG	0.302791	4.3:-42117961	None:intergenic
TTTAATGGAATGGGATCATT+AGG	0.305018	4.3:+42119584	MS.gene062564:CDS
TGTGAATGGTACAAAGGATT+TGG	0.314338	4.3:+42119397	MS.gene062564:CDS
ACCACTTCTGATTCCGGATC+TGG	0.324071	4.3:-42117863	None:intergenic
CCATGAACCTTCTAGAGCTT+TGG	0.326353	4.3:+42118078	MS.gene062564:CDS
CAAATTCAAACAATATGTTT+GGG	0.356792	4.3:+42119372	MS.gene062564:CDS
AATAGACAAATGTATGATTC+AGG	0.359404	4.3:+42119455	MS.gene062564:CDS
CAGCAGCATTAAGCAACTTT+CGG	0.370255	4.3:+42118772	MS.gene062564:CDS
CATGAACCTTCTAGAGCTTT+GGG	0.370674	4.3:+42118079	MS.gene062564:CDS
AACAATAGCAGCACCAATCT+TGG	0.379634	4.3:+42119326	MS.gene062564:CDS
AATCTCTTGTAAAACCCATT+TGG	0.383514	4.3:-42119499	None:intergenic
CGAAAGTTGCTTAATGCTGC+TGG	0.400098	4.3:-42118771	None:intergenic
CCAAAGCTCTAGAAGGTTCA+TGG	0.410521	4.3:-42118078	None:intergenic
AATAATCTCCAGAGCCAGTA+TGG	0.415643	4.3:+42119608	MS.gene062564:CDS
CTTGGTGAGTTTAATGGAAT+GGG	0.417145	4.3:+42119575	MS.gene062564:CDS
CCATGTAGCATTGGCAAAGA+TGG	0.419067	4.3:-42119008	None:intergenic
GAAGACTGTGTTATTATCAT+TGG	0.421766	4.3:-42119204	None:intergenic
GCTGCAAATTCTGGTCTCTC+TGG	0.424694	4.3:-42117952	None:intergenic
GCTGTTACTGACAAATGATT+TGG	0.431928	4.3:-42119131	None:intergenic
AATATGCAGTTCAATCTGAT+TGG	0.433651	4.3:+42118179	MS.gene062564:CDS
CCACTTTCACATTGTTAATG+AGG	0.436319	4.3:+42119238	MS.gene062564:CDS
AAATCTCCCAAAGCTCTAGA+AGG	0.438385	4.3:-42118085	None:intergenic
GCTCTTTGCTTCAGCTTCCA+TGG	0.444326	4.3:-42117998	None:intergenic
AAAGCTCATGGCAAGATTTG+TGG	0.444956	4.3:+42118202	MS.gene062564:CDS
ATGCAAACAATGGATGTGTT+TGG	0.447388	4.3:+42118948	MS.gene062564:CDS
TAAATACCCACCTCCAAGAT+TGG	0.449616	4.3:-42119339	None:intergenic
GTTGCAGAAAGAATCTCAAA+TGG	0.449863	4.3:+42119160	MS.gene062564:CDS
CAAAGATCAAATTCGAAAGA+AGG	0.450162	4.3:+42118024	MS.gene062564:CDS
TTATGTGAAATCTGCAACAA+GGG	0.451384	4.3:+42117926	MS.gene062564:CDS
TATGTCACCAAAGTCATTGA+TGG	0.456254	4.3:+42117889	MS.gene062564:CDS
TTTGCTTCAGCTTCCATGGT+AGG	0.459248	4.3:-42117994	None:intergenic
ACTTGGTGAGTTTAATGGAA+TGG	0.460921	4.3:+42119574	MS.gene062564:CDS
AGTAGTGTCCACCACCATAC+TGG	0.466451	4.3:-42119622	None:intergenic
GAAAACATGGTGAGAAGAAG+TGG	0.467136	4.3:+42118134	MS.gene062564:CDS
TTCATTACTCCATGTAGCAT+TGG	0.470776	4.3:-42119017	None:intergenic
CCTCATTAACAATGTGAAAG+TGG	0.472482	4.3:-42119238	None:intergenic
CCATCTTTGCCAATGCTACA+TGG	0.474776	4.3:+42119008	MS.gene062564:CDS
TTTGTCGCCATCAATGACTT+TGG	0.484591	4.3:-42117896	None:intergenic
ACCAGAATTTGCAGCTTCAT+CGG	0.488033	4.3:+42117960	MS.gene062564:CDS
ATAGCAACCACTTCTGATTC+CGG	0.489329	4.3:-42117869	None:intergenic
TGGTGCACACAAGTCTTCTC+AGG	0.500242	4.3:-42118058	None:intergenic
AGAGCTTTGGGAGATTTGAC+AGG	0.501432	4.3:+42118091	MS.gene062564:CDS
AGCAGCACCAATCTTGGAGG+TGG	0.501855	4.3:+42119332	MS.gene062564:CDS
TGCAGATTTCACATAAGAAA+CGG	0.507472	4.3:-42117919	None:intergenic
GTCCACCACCATACTGGCTC+TGG	0.507855	4.3:-42119616	None:intergenic
GAATAAGTTGGTGAATTTGG+AGG	0.513790	4.3:+42119301	MS.gene062564:CDS
AACATCATCAGAACCACCAT+TGG	0.518482	4.3:+42118881	MS.gene062564:CDS
AATATGTTTGGGATTGTGAA+TGG	0.518566	4.3:+42119383	MS.gene062564:CDS
AATAAGTTGGTGAATTTGGA+GGG	0.523273	4.3:+42119302	MS.gene062564:CDS
CTCCAGAGCCAGTATGGTGG+TGG	0.533266	4.3:+42119614	MS.gene062564:CDS
AAATGTATGATTCAGGTTCA+AGG	0.535524	4.3:+42119462	MS.gene062564:CDS
TTCAGATATAATGCAAACAA+TGG	0.539222	4.3:+42118938	MS.gene062564:CDS
TTGCAGAAAGAATCTCAAAT+GGG	0.545569	4.3:+42119161	MS.gene062564:CDS
TACAAAGGATTTGGAACATG+TGG	0.546663	4.3:+42119406	MS.gene062564:CDS
CTTATGTGAAATCTGCAACA+AGG	0.550563	4.3:+42117925	MS.gene062564:CDS
CACATGAATGAATCCAGATC+CGG	0.553014	4.3:+42117850	None:intergenic
ACATCATCAGAACCACCATT+GGG	0.553100	4.3:+42118882	MS.gene062564:CDS
CAATCTGATTGGAAAGCTCA+TGG	0.563178	4.3:+42118190	MS.gene062564:CDS
TTAGTGTAATTTCCCAATGG+TGG	0.567890	4.3:-42118894	None:intergenic
AATAGCAGCACCAATCTTGG+AGG	0.591091	4.3:+42119329	MS.gene062564:CDS
TGGGATTGTGAATGGTACAA+AGG	0.593396	4.3:+42119391	MS.gene062564:CDS
AAGTGAAGAGTTGAATAAGT+TGG	0.597167	4.3:+42119289	MS.gene062564:CDS
AATCTCAAATGGGATCTACA+AGG	0.601252	4.3:+42119171	MS.gene062564:CDS
TCTGAGTGAAACTGAAAACC+AGG	0.601782	4.3:-42118843	None:intergenic
AGAGAGTACAAATGTGATTG+TGG	0.604424	4.3:+42118229	MS.gene062564:CDS
GGCGAGGACACAACCTACCA+TGG	0.608097	4.3:+42117981	MS.gene062564:CDS
TCCAGATCCGGAATCAGAAG+TGG	0.621390	4.3:+42117862	MS.gene062564:CDS
GCAGCACCAATCTTGGAGGT+GGG	0.638474	4.3:+42119333	MS.gene062564:CDS
AAACATTATAGTAGAAAACA+TGG	0.647572	4.3:+42118121	MS.gene062564:CDS
ATGTTAGTGTAATTTCCCAA+TGG	0.651961	4.3:-42118897	None:intergenic
AATTTGCAGCTTCATCGGCG+AGG	0.683827	4.3:+42117965	MS.gene062564:CDS
AATCTCCAGAGCCAGTATGG+TGG	0.695447	4.3:+42119611	MS.gene062564:CDS
TTATTATAATTCAGCCACTG+TGG	0.703090	4.3:-42118978	None:intergenic
ACAAAGTGCAAAGATAACAA+CGG	0.712713	4.3:+42118746	MS.gene062564:CDS
TGTTTGGATCACAACCACAG+TGG	0.860213	4.3:+42118964	MS.gene062564:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTAACTTAATGTATTTAGA+AGG	-	chr4.3:42118546-42118565	None:intergenic	15.0%
!!	AAACATTATAGTAGAAAACA+TGG	+	chr4.3:42118121-42118140	MS.gene062564:CDS	20.0%
!!	AGATAGTAAATATATATACC+TGG	-	chr4.3:42118266-42118285	None:intergenic	20.0%
!!	CAAATTCAAACAATATGTTT+GGG	+	chr4.3:42119372-42119391	MS.gene062564:CDS	20.0%
!!	CCATTAAAATCATGAAATTA+AGG	-	chr4.3:42118434-42118453	None:intergenic	20.0%
!!	TCAAAAGAAAAAAACCAAAT+GGG	+	chr4.3:42119485-42119504	MS.gene062564:CDS	20.0%
!!	TCAAATTCAAACAATATGTT+TGG	+	chr4.3:42119371-42119390	MS.gene062564:CDS	20.0%
!!	TTTAAATTGTAGCAATCTAA+AGG	-	chr4.3:42118521-42118540	None:intergenic	20.0%
!!!	CCTTAATTTCATGATTTTAA+TGG	+	chr4.3:42118431-42118450	MS.gene062564:intron	20.0%
!!!	GTTTGGAATAAATAATAATG+AGG	+	chr4.3:42118611-42118630	MS.gene062564:intron	20.0%
!!!	TAATTTCATGATTTTAATGG+CGG	+	chr4.3:42118434-42118453	MS.gene062564:intron	20.0%
!	AATAGACAAATGTATGATTC+AGG	+	chr4.3:42119455-42119474	MS.gene062564:CDS	25.0%
!	ATTATGTGTGTTAACAAATC+AGG	+	chr4.3:42118676-42118695	MS.gene062564:intron	25.0%
!	GTCAAAAGAAAAAAACCAAA+TGG	+	chr4.3:42119484-42119503	MS.gene062564:CDS	25.0%
!	TAATTGAAGGAATGTTTGTT+TGG	+	chr4.3:42118594-42118613	MS.gene062564:intron	25.0%
!	TTCAGATATAATGCAAACAA+TGG	+	chr4.3:42118938-42118957	MS.gene062564:CDS	25.0%
!!	GTTTTACAAGAGATTTTCTT+GGG	+	chr4.3:42119507-42119526	MS.gene062564:CDS	25.0%
!!	TTTTACAAGAGATTTTCTTG+GGG	+	chr4.3:42119508-42119527	MS.gene062564:CDS	25.0%
	AAAAGTAGTTGTGAGATTGT+TGG	+	chr4.3:42118481-42118500	MS.gene062564:intron	30.0%
	AAAGTAGTTGTGAGATTGTT+GGG	+	chr4.3:42118482-42118501	MS.gene062564:intron	30.0%
	AAGTGAAGAGTTGAATAAGT+TGG	+	chr4.3:42119289-42119308	MS.gene062564:CDS	30.0%
	AATATGCAGTTCAATCTGAT+TGG	+	chr4.3:42118179-42118198	MS.gene062564:CDS	30.0%
	AATCTCTTGTAAAACCCATT+TGG	-	chr4.3:42119502-42119521	None:intergenic	30.0%
	ACAAAGTGCAAAGATAACAA+CGG	+	chr4.3:42118746-42118765	MS.gene062564:CDS	30.0%
	AGATTGAACTGCATATTTCT+TGG	-	chr4.3:42118176-42118195	None:intergenic	30.0%
	ATGTTAGTGTAATTTCCCAA+TGG	-	chr4.3:42118900-42118919	None:intergenic	30.0%
	CAAAGATCAAATTCGAAAGA+AGG	+	chr4.3:42118024-42118043	MS.gene062564:CDS	30.0%
	CATGTGACAGATATAATTGA+AGG	+	chr4.3:42118581-42118600	MS.gene062564:intron	30.0%
	GGAAAAATATGAGGAATTCT+TGG	-	chr4.3:42118825-42118844	None:intergenic	30.0%
	TGAAAACCAGGAAAAATATG+AGG	-	chr4.3:42118834-42118853	None:intergenic	30.0%
	TGCAGATTTCACATAAGAAA+CGG	-	chr4.3:42117922-42117941	None:intergenic	30.0%
	TTATGTGAAATCTGCAACAA+GGG	+	chr4.3:42117926-42117945	MS.gene062564:CDS	30.0%
	TTATTATAATTCAGCCACTG+TGG	-	chr4.3:42118981-42119000	None:intergenic	30.0%
	TTGCAGAAAGAATCTCAAAT+GGG	+	chr4.3:42119161-42119180	MS.gene062564:CDS	30.0%
	TTTAATGGAATGGGATCATT+AGG	+	chr4.3:42119584-42119603	MS.gene062564:CDS	30.0%
	TTTCAGTTTCACTCAGAATT+TGG	+	chr4.3:42118849-42118868	MS.gene062564:CDS	30.0%
!	AAATGTATGATTCAGGTTCA+AGG	+	chr4.3:42119462-42119481	MS.gene062564:CDS	30.0%
!	AATATGTTTGGGATTGTGAA+TGG	+	chr4.3:42119383-42119402	MS.gene062564:CDS	30.0%
!	AGAATTCCTCATATTTTTCC+TGG	+	chr4.3:42118825-42118844	MS.gene062564:CDS	30.0%
!	GAAGACTGTGTTATTATCAT+TGG	-	chr4.3:42119207-42119226	None:intergenic	30.0%
!	GGTTTTACAAGAGATTTTCT+TGG	+	chr4.3:42119506-42119525	MS.gene062564:CDS	30.0%
!!	AATAAGTTGGTGAATTTGGA+GGG	+	chr4.3:42119302-42119321	MS.gene062564:CDS	30.0%
!!	ACAATCTCACAACTACTTTT+CGG	-	chr4.3:42118481-42118500	None:intergenic	30.0%
!!	GTTGAATAAGTTGGTGAATT+TGG	+	chr4.3:42119298-42119317	MS.gene062564:CDS	30.0%
	AAGTAGTTGTGAGATTGTTG+GGG	+	chr4.3:42118483-42118502	MS.gene062564:intron	35.0%
	AATCTCAAATGGGATCTACA+AGG	+	chr4.3:42119171-42119190	MS.gene062564:CDS	35.0%
	ATGCAAACAATGGATGTGTT+TGG	+	chr4.3:42118948-42118967	MS.gene062564:CDS	35.0%
	CCACTTTCACATTGTTAATG+AGG	+	chr4.3:42119238-42119257	MS.gene062564:CDS	35.0%
	CCTCATTAACAATGTGAAAG+TGG	-	chr4.3:42119241-42119260	None:intergenic	35.0%
	CTTATGTGAAATCTGCAACA+AGG	+	chr4.3:42117925-42117944	MS.gene062564:CDS	35.0%
	CTTGGTGAGTTTAATGGAAT+GGG	+	chr4.3:42119575-42119594	MS.gene062564:CDS	35.0%
	GCTGTTACTGACAAATGATT+TGG	-	chr4.3:42119134-42119153	None:intergenic	35.0%
	GTTGCAGAAAGAATCTCAAA+TGG	+	chr4.3:42119160-42119179	MS.gene062564:CDS	35.0%
	TATGTCACCAAAGTCATTGA+TGG	+	chr4.3:42117889-42117908	MS.gene062564:CDS	35.0%
	TGTGAATGGTACAAAGGATT+TGG	+	chr4.3:42119397-42119416	MS.gene062564:CDS	35.0%
	TGTGTGTTAACAAATCAGGA+AGG	+	chr4.3:42118680-42118699	MS.gene062564:intron	35.0%
	TTAGTGTAATTTCCCAATGG+TGG	-	chr4.3:42118897-42118916	None:intergenic	35.0%
	TTCATTACTCCATGTAGCAT+TGG	-	chr4.3:42119020-42119039	None:intergenic	35.0%
!	ACTTGGTGAGTTTAATGGAA+TGG	+	chr4.3:42119574-42119593	MS.gene062564:CDS	35.0%
!	AGAGAGTACAAATGTGATTG+TGG	+	chr4.3:42118229-42118248	MS.gene062564:CDS	35.0%
!	CAAGAACTTGGTGAGTTTAA+TGG	+	chr4.3:42119569-42119588	MS.gene062564:CDS	35.0%
!	TACAAAGGATTTGGAACATG+TGG	+	chr4.3:42119406-42119425	MS.gene062564:CDS	35.0%
!!	GAATAAGTTGGTGAATTTGG+AGG	+	chr4.3:42119301-42119320	MS.gene062564:CDS	35.0%
	AAAGCTCATGGCAAGATTTG+TGG	+	chr4.3:42118202-42118221	MS.gene062564:CDS	40.0%
	AACAATAGCAGCACCAATCT+TGG	+	chr4.3:42119326-42119345	MS.gene062564:CDS	40.0%
	AACATCATCAGAACCACCAT+TGG	+	chr4.3:42118881-42118900	MS.gene062564:CDS	40.0%
	AATAATCTCCAGAGCCAGTA+TGG	+	chr4.3:42119608-42119627	MS.gene062564:CDS	40.0%
	ACATCATCAGAACCACCATT+GGG	+	chr4.3:42118882-42118901	MS.gene062564:CDS	40.0%
	ACCAGAATTTGCAGCTTCAT+CGG	+	chr4.3:42117960-42117979	MS.gene062564:CDS	40.0%
	AGTAGTTGTGAGATTGTTGG+GGG	+	chr4.3:42118484-42118503	MS.gene062564:intron	40.0%
	ATAGCAACCACTTCTGATTC+CGG	-	chr4.3:42117872-42117891	None:intergenic	40.0%
	CAATCTGATTGGAAAGCTCA+TGG	+	chr4.3:42118190-42118209	MS.gene062564:CDS	40.0%
	CAGCAGCATTAAGCAACTTT+CGG	+	chr4.3:42118772-42118791	MS.gene062564:CDS	40.0%
	CCAAGTTCTTGCTGCAAAAA+AGG	-	chr4.3:42119560-42119579	None:intergenic	40.0%
	GAAAACATGGTGAGAAGAAG+TGG	+	chr4.3:42118134-42118153	MS.gene062564:CDS	40.0%
	TAAATACCCACCTCCAAGAT+TGG	-	chr4.3:42119342-42119361	None:intergenic	40.0%
	TCAGTAGTGGCTGCAATATA+CGG	+	chr4.3:42118359-42118378	MS.gene062564:intron	40.0%
	TCTCAAATCCAACGTGTTCT+TGG	-	chr4.3:42118305-42118324	None:intergenic	40.0%
	TCTGAGTGAAACTGAAAACC+AGG	-	chr4.3:42118846-42118865	None:intergenic	40.0%
	TGGGATTGTGAATGGTACAA+AGG	+	chr4.3:42119391-42119410	MS.gene062564:CDS	40.0%
	TTTGTCGCCATCAATGACTT+TGG	-	chr4.3:42117899-42117918	None:intergenic	40.0%
!	ACAAGAGATTTTCTTGGGGT+TGG	+	chr4.3:42119512-42119531	MS.gene062564:CDS	40.0%
!	ATTGTGGCACAATTTTCTCC+AGG	+	chr4.3:42118245-42118264	MS.gene062564:CDS	40.0%
!!	AAATCTCCCAAAGCTCTAGA+AGG	-	chr4.3:42118088-42118107	None:intergenic	40.0%
!!	CAACTACTTTTCGGTTGCAT+TGG	-	chr4.3:42118472-42118491	None:intergenic	40.0%
!!	CATGAACCTTCTAGAGCTTT+GGG	+	chr4.3:42118079-42118098	MS.gene062564:CDS	40.0%
!!!	CCTTTTTTGCAGCAAGAACT+TGG	+	chr4.3:42119557-42119576	MS.gene062564:CDS	40.0%
	AATAGCAGCACCAATCTTGG+AGG	+	chr4.3:42119329-42119348	MS.gene062564:CDS	45.0%
	CAGATCCAATGACTCAGTAG+TGG	+	chr4.3:42118346-42118365	MS.gene062564:intron	45.0%
	CCATCTTTGCCAATGCTACA+TGG	+	chr4.3:42119008-42119027	MS.gene062564:CDS	45.0%
	CGAAAGTTGCTTAATGCTGC+TGG	-	chr4.3:42118774-42118793	None:intergenic	45.0%
	GTAGTTGTGAGATTGTTGGG+GGG	+	chr4.3:42118485-42118504	MS.gene062564:intron	45.0%
	TGTTTGGATCACAACCACAG+TGG	+	chr4.3:42118964-42118983	MS.gene062564:CDS	45.0%
	TTTAATGGCGGTTGCAATCG+CGG	+	chr4.3:42118446-42118465	MS.gene062564:intron	45.0%
	TTTGCTTCAGCTTCCATGGT+AGG	-	chr4.3:42117997-42118016	None:intergenic	45.0%
!!	AGAGCTTTGGGAGATTTGAC+AGG	+	chr4.3:42118091-42118110	MS.gene062564:CDS	45.0%
!!	CCAAAGCTCTAGAAGGTTCA+TGG	-	chr4.3:42118081-42118100	None:intergenic	45.0%
!!	CCATGAACCTTCTAGAGCTT+TGG	+	chr4.3:42118078-42118097	MS.gene062564:CDS	45.0%
!!	CCATGTAGCATTGGCAAAGA+TGG	-	chr4.3:42119011-42119030	None:intergenic	45.0%
!!!	GGAACATGTGGTTTTGTCTG+TGG	+	chr4.3:42119418-42119437	MS.gene062564:CDS	45.0%
!!	ATTAAGTTAAATTAATTTAA+TGG	+	chr4.3:42118555-42118574	MS.gene062564:intron	5.0%
	AATCTCCAGAGCCAGTATGG+TGG	+	chr4.3:42119611-42119630	MS.gene062564:CDS	50.0%
	AATTTGCAGCTTCATCGGCG+AGG	+	chr4.3:42117965-42117984	MS.gene062564:CDS	50.0%
	ACCACTTCTGATTCCGGATC+TGG	-	chr4.3:42117866-42117885	None:intergenic	50.0%
	AGTAGTGTCCACCACCATAC+TGG	-	chr4.3:42119625-42119644	None:intergenic	50.0%
	GCCGATGAAGCTGCAAATTC+TGG	-	chr4.3:42117964-42117983	None:intergenic	50.0%
	GCTCTTTGCTTCAGCTTCCA+TGG	-	chr4.3:42118001-42118020	None:intergenic	50.0%
	GCTGCAAATTCTGGTCTCTC+TGG	-	chr4.3:42117955-42117974	None:intergenic	50.0%
	TCCAGATCCGGAATCAGAAG+TGG	+	chr4.3:42117862-42117881	MS.gene062564:CDS	50.0%
	TGCAGCCACTACTGAGTCAT+TGG	-	chr4.3:42118354-42118373	None:intergenic	50.0%
	TGCAGTCACCAAGAACACGT+TGG	+	chr4.3:42118294-42118313	MS.gene062564:intron	50.0%
	TGGTGCACACAAGTCTTCTC+AGG	-	chr4.3:42118061-42118080	None:intergenic	50.0%
!	CGTGTTCTTGGTGACTGCAA+TGG	-	chr4.3:42118293-42118312	None:intergenic	50.0%
	AGCAGCACCAATCTTGGAGG+TGG	+	chr4.3:42119332-42119351	MS.gene062564:CDS	55.0%
	GCAGCACCAATCTTGGAGGT+GGG	+	chr4.3:42119333-42119352	MS.gene062564:CDS	55.0%
	CTCCAGAGCCAGTATGGTGG+TGG	+	chr4.3:42119614-42119633	MS.gene062564:CDS	60.0%
	GGCGAGGACACAACCTACCA+TGG	+	chr4.3:42117981-42118000	MS.gene062564:CDS	60.0%
!!	GTCCACCACCATACTGGCTC+TGG	-	chr4.3:42119619-42119638	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	42117857	42119649	42117857	ID=MS.gene062564
chr4.3	mRNA	42117857	42119649	42117857	ID=MS.gene062564.t1;Parent=MS.gene062564
chr4.3	exon	42117857	42118266	42117857	ID=MS.gene062564.t1.exon1;Parent=MS.gene062564.t1
chr4.3	CDS	42117857	42118266	42117857	ID=cds.MS.gene062564.t1;Parent=MS.gene062564.t1
chr4.3	exon	42118698	42119649	42118698	ID=MS.gene062564.t1.exon2;Parent=MS.gene062564.t1
chr4.3	CDS	42118698	42119649	42118698	ID=cds.MS.gene062564.t1;Parent=MS.gene062564.t1

Gene Sequence

>MS.gene062564

ATGAATCCAGATCCGGAATCAGAAGTGGTTGCTATGTCACCAAAGTCATTGATGGCGACAAACCGTTTCTTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTTCATCGGCGAGGACACAACCTACCATGGAAGCTGAAGCAAAGAGCAAACAAAGATCAAATTCGAAAGAAGGTTTATGTGTGTCCTGAGAAGACTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATGGCAAGATTTGTGGAACTAGAGAGTACAAATGTGATTGTGGCACAATTTTCTCCAGGTATATATATTTACTATCTTTCGCCATTGCAGTCACCAAGAACACGTTGGATTTGAGATAGACACAATTTTTCTAAACTCAGATCCAATGACTCAGTAGTGGCTGCAATATACGGCGACATAGAAAATAAAAATACTAATGATTAGCATTTCAATTTCAAATGTCCTTAATTTCATGATTTTAATGGCGGTTGCAATCGCGGCCAATGCAACCGAAAAGTAGTTGTGAGATTGTTGGGGGGATCTGAAGATCCTTTAGATTGCTACAATTTAAAAGCCTTCTAAATACATTAAGTTAAATTAATTTAATGGATGCATGTGACAGATATAATTGAAGGAATGTTTGTTTGGAATAAATAATAATGAGGATTGTTAATTCATGTTCAACTAATTCATTTATGTATTTATTTATTATGTGTGTTAACAAATCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGTGATGCATTAACTGAACAAAGTGCAAAGATAACAACGGTTCCAGCAGCATTAAGCAACTTTCGGAATGATCATTTGACGAATACTCAAACTCCAAGAATTCCTCATATTTTTCCTGGTTTTCAGTTTCACTCAGAATTTGGTAATTCAGCAACATCATCAGAACCACCATTGGGAAATTACACTAACATTTCTCATCTTCATCAAAATTCAGATATAATGCAAACAATGGATGTGTTTGGATCACAACCACAGTGGCTGAATTATAATAATACTAATCCATCTTTGCCAATGCTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGATTTGTCTGCTAGTGTAATAAGCTCTTTGTACTTGAGTAGAAGTCAGAATCAGAATCAACAAGAAGCACCAAATCATTTGTCAGTAACAGCATCACTGTTGCAGAAAGAATCTCAAATGGGATCTACAAGGACAATAATTACCAATGATAATAACACAGTCTTCAACAATTTGAACCACTTTCACATTGTTAATGAGGTTCAGAAATTTTATAACAAGCAATGTGAAAGTGAAGAGTTGAATAAGTTGGTGAATTTGGAGGGAAACAATAGCAGCACCAATCTTGGAGGTGGGTATTTATTAAATGATTCAAATTCAAACAATATGTTTGGGATTGTGAATGGTACAAAGGATTTGGAACATGTGGTTTTGTCTGTGGATAAAGAGACAACAAATAGACAAATGTATGATTCAGGTTCAAGGTCAAAAGAAAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGAAGATGTCTCAATGAGTAGACCTTTTTTGCAGCAAGAACTTGGTGAGTTTAATGGAATGGGATCATTAGGAAATAATCTCCAGAGCCAGTATGGTGGTGGACACTACTGCTAG

Protein sequence

>MS.gene062564.t1

MNPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHGKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFHSEFGNSATSSEPPLGNYTNISHLHQNSDIMQTMDVFGSQPQWLNYNNTNPSLPMLHGVMKQEQEENKDLSASVISSLYLSRSQNQNQQEAPNHLSVTASLLQKESQMGSTRTIITNDNNTVFNNLNHFHIVNEVQKFYNKQCESEELNKLVNLEGNNSSTNLGGGYLLNDSNSNNMFGIVNGTKDLEHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGEDVSMSRPFLQQELGEFNGMGSLGNNLQSQYGGGHYC