Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65412.t1 | XP_003604268.2 | 97.6 | 82 | 2 | 0 | 1 | 82 | 1 | 82 | 5.80E-35 | 156.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65412.t1 | G7JEH5 | 97.6 | 82 | 2 | 0 | 1 | 82 | 1 | 82 | 4.2e-35 | 156.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene65412 | 0.814832 | 1.26E-51 | -1.69E-46 |
| MS.gene049166 | MS.gene65412 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene65412 | 0.809725 | 1.64E-50 | -1.69E-46 |
| MS.gene049703 | MS.gene65412 | -0.825857 | 3.73E-54 | -1.69E-46 |
| MS.gene049756 | MS.gene65412 | 0.819538 | 1.10E-52 | -1.69E-46 |
| MS.gene04984 | MS.gene65412 | 0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene65412 | 0.823069 | 1.69E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene65412 | 0.841092 | 5.86E-58 | -1.69E-46 |
| MS.gene050317 | MS.gene65412 | 0.84909 | 4.04E-60 | -1.69E-46 |
| MS.gene050320 | MS.gene65412 | 0.830555 | 2.75E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene65412 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene65412 | 0.833445 | 5.31E-56 | -1.69E-46 |
| MS.gene051243 | MS.gene65412 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene65412 | 0.873696 | 1.20E-67 | -1.69E-46 |
| MS.gene051451 | MS.gene65412 | 0.816517 | 5.31E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene65412 | 0.808064 | 3.72E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene65412 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene051756 | MS.gene65412 | 0.845228 | 4.63E-59 | -1.69E-46 |
| MS.gene051757 | MS.gene65412 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene65412 | 0.832212 | 1.08E-55 | -1.69E-46 |
| MS.gene052202 | MS.gene65412 | 0.814681 | 1.36E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene65412 | 0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene65412 | 0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene65412 | 0.823398 | 1.42E-53 | -1.69E-46 |
| MS.gene052527 | MS.gene65412 | 0.828072 | 1.10E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene65412 | 0.810893 | 9.19E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene65412 | 0.814023 | 1.90E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene65412 | 0.858669 | 7.03E-63 | -1.69E-46 |
| MS.gene053359 | MS.gene65412 | 0.808856 | 2.52E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene65412 | 0.828495 | 8.71E-55 | -1.69E-46 |
| MS.gene05344 | MS.gene65412 | -0.807162 | 5.78E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene65412 | 0.806528 | 7.88E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene65412 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene65412 | 0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene65412 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene65412 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene055174 | MS.gene65412 | 0.814989 | 1.16E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene65412 | 0.81242 | 4.28E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene65412 | 0.836041 | 1.18E-56 | -1.69E-46 |
| MS.gene056181 | MS.gene65412 | 0.803233 | 3.84E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene65412 | 0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene056580 | MS.gene65412 | 0.836806 | 7.54E-57 | -1.69E-46 |
| MS.gene056631 | MS.gene65412 | 0.814388 | 1.58E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene65412 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene65412 | 0.822134 | 2.79E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene65412 | 0.835408 | 1.71E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene65412 | 0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene65412 | 0.836574 | 8.64E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene65412 | 0.872976 | 2.10E-67 | -1.69E-46 |
| MS.gene057452 | MS.gene65412 | -0.811129 | 8.17E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene65412 | 0.825861 | 3.72E-54 | -1.69E-46 |
| MS.gene058054 | MS.gene65412 | 0.810395 | 1.18E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene65412 | 0.838789 | 2.33E-57 | -1.69E-46 |
| MS.gene058182 | MS.gene65412 | 0.854933 | 8.85E-62 | -1.69E-46 |
| MS.gene058238 | MS.gene65412 | 0.858458 | 8.13E-63 | -1.69E-46 |
| MS.gene058646 | MS.gene65412 | 0.825047 | 5.80E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene65412 | 0.847991 | 8.15E-60 | -1.69E-46 |
| MS.gene058758 | MS.gene65412 | 0.809853 | 1.54E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene65412 | 0.86589 | 4.25E-65 | -1.69E-46 |
| MS.gene059898 | MS.gene65412 | 0.853964 | 1.69E-61 | -1.69E-46 |
| MS.gene06001 | MS.gene65412 | 0.832299 | 1.02E-55 | -1.69E-46 |
| MS.gene060084 | MS.gene65412 | 0.832899 | 7.26E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene65412 | 0.819202 | 1.31E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene65412 | 0.821236 | 4.49E-53 | -1.69E-46 |
| MS.gene060463 | MS.gene65412 | 0.820437 | 6.86E-53 | -1.69E-46 |
| MS.gene060465 | MS.gene65412 | 0.829102 | 6.21E-55 | -1.69E-46 |
| MS.gene060702 | MS.gene65412 | 0.815192 | 1.05E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene65412 | 0.830464 | 2.89E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene65412 | 0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene65412 | 0.821211 | 4.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65412.t1 | MTR_4g007290 | 97.561 | 82 | 2 | 0 | 1 | 82 | 1 | 82 | 1.22e-54 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65412.t1 | AT1G16000 | 53.488 | 86 | 36 | 1 | 1 | 82 | 1 | 86 | 1.37e-29 | 100 |
| MS.gene65412.t1 | AT1G80890 | 58.537 | 82 | 32 | 1 | 1 | 82 | 1 | 80 | 1.54e-22 | 82.8 |
Find 12 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGCGGCGAAGGTGGATT+TGG | 0.337625 | 4.3:-87981296 | MS.gene65412:CDS |
| CGAGATCATTTGGAAGAAGC+AGG | 0.431451 | 4.3:+87977685 | None:intergenic |
| GCGAAGGTGGATTTGGATCA+AGG | 0.444650 | 4.3:-87981289 | MS.gene65412:CDS |
| TCATCAAGATTACTTGGAAA+AGG | 0.468209 | 4.3:-87977743 | MS.gene65412:CDS |
| TCAATCTCATCAAGATTACT+TGG | 0.473577 | 4.3:-87977749 | MS.gene65412:CDS |
| GCAAAAGTGAAGAGCGGCGA+AGG | 0.559375 | 4.3:-87981305 | MS.gene65412:CDS |
| AAAGTGAAGAGCGGCGAAGG+TGG | 0.576268 | 4.3:-87981302 | MS.gene65412:CDS |
| CCATGGTTTCTTATGAACAG+AGG | 0.615850 | 4.3:-87981188 | MS.gene65412:intron |
| TGGAAAAGGCTGATAAAGCA+AGG | 0.617239 | 4.3:-87977729 | MS.gene65412:CDS |
| TTGAATCAAATTCTATATAG+CGG | 0.633543 | 4.3:-87981266 | MS.gene65412:CDS |
| CCTCTGTTCATAAGAAACCA+TGG | 0.639570 | 4.3:+87981188 | None:intergenic |
| GCAAAAGCAAAAGTGAAGAG+CGG | 0.660636 | 4.3:-87981311 | MS.gene65412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATAGTAAATTTAATA+TGG | + | chr4.3:87978965-87978984 | None:intergenic | 10.0% |
| !! | ATATTAAATTTACTATAAAC+TGG | - | chr4.3:87978964-87978983 | MS.gene65412:intron | 10.0% |
| !! | TATAAAAGTTATTAGAATTT+GGG | + | chr4.3:87978129-87978148 | None:intergenic | 10.0% |
| !! | TTAATAACAGAATTATATAA+CGG | - | chr4.3:87979769-87979788 | MS.gene65412:intron | 10.0% |
| !! | TTATTTAAAGAAAAATAATC+AGG | - | chr4.3:87978597-87978616 | MS.gene65412:intron | 10.0% |
| !! | TTTATTATTAAAATAGTTAG+TGG | - | chr4.3:87979972-87979991 | MS.gene65412:intron | 10.0% |
| !!! | ACTAACTATTTTAATAATAA+AGG | + | chr4.3:87979973-87979992 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTTTAATGATT+TGG | + | chr4.3:87979064-87979083 | None:intergenic | 10.0% |
| !! | AACTAAATGAAATGTATAAA+TGG | + | chr4.3:87981202-87981221 | None:intergenic | 15.0% |
| !! | AACTGAAATACAATAAATAA+AGG | - | chr4.3:87980804-87980823 | MS.gene65412:intron | 15.0% |
| !! | AGTTGTAAATTTATATAGTA+GGG | - | chr4.3:87980946-87980965 | MS.gene65412:intron | 15.0% |
| !! | CGAATTATGAATAAATAAAT+AGG | + | chr4.3:87980269-87980288 | None:intergenic | 15.0% |
| !! | GTATAAAAGTTATTAGAATT+TGG | + | chr4.3:87978130-87978149 | None:intergenic | 15.0% |
| !! | TATTATATGTCTATTTAAAC+TGG | - | chr4.3:87981056-87981075 | MS.gene65412:intron | 15.0% |
| !! | TTCAAAATATGAGTATTTAT+GGG | + | chr4.3:87980192-87980211 | None:intergenic | 15.0% |
| !! | TTTCAAAATATGAGTATTTA+TGG | + | chr4.3:87980193-87980212 | None:intergenic | 15.0% |
| !! | TTTGAAAAAATGAGTTTAAT+TGG | - | chr4.3:87979939-87979958 | MS.gene65412:intron | 15.0% |
| !!! | AAAAGTTATTTCTATAATTG+AGG | + | chr4.3:87978037-87978056 | None:intergenic | 15.0% |
| !!! | ATTATATAACGGAAATTATT+AGG | - | chr4.3:87979780-87979799 | MS.gene65412:intron | 15.0% |
| !! | AGCAAAATACACAAAATTAA+AGG | + | chr4.3:87980634-87980653 | None:intergenic | 20.0% |
| !! | AGTTTCAAAGTTATTAACTT+TGG | - | chr4.3:87977905-87977924 | MS.gene65412:intron | 20.0% |
| !! | ATGGAGTAATAAATAATTGT+AGG | + | chr4.3:87979849-87979868 | None:intergenic | 20.0% |
| !! | CAAAATACACAAAATTAAAG+GGG | + | chr4.3:87980632-87980651 | None:intergenic | 20.0% |
| !! | GAAATACAAATTGTTAACTT+AGG | + | chr4.3:87979157-87979176 | None:intergenic | 20.0% |
| !! | GAGTTGTAAATTTATATAGT+AGG | - | chr4.3:87980945-87980964 | MS.gene65412:intron | 20.0% |
| !! | GCAAAATACACAAAATTAAA+GGG | + | chr4.3:87980633-87980652 | None:intergenic | 20.0% |
| !! | GGAAATTATTAGGAATTTAA+TGG | - | chr4.3:87979790-87979809 | MS.gene65412:intron | 20.0% |
| !! | GGTTTAATAGAATAACAAAT+AGG | + | chr4.3:87981096-87981115 | None:intergenic | 20.0% |
| !! | GTTTCAAAGTTATTAACTTT+GGG | - | chr4.3:87977906-87977925 | MS.gene65412:intron | 20.0% |
| !! | TTCTTTAAATAACTTTCTCT+TGG | + | chr4.3:87978589-87978608 | None:intergenic | 20.0% |
| !! | TTGAATCAAATTCTATATAG+CGG | - | chr4.3:87977747-87977766 | MS.gene65412:CDS | 20.0% |
| !! | TTTATAAGTAAGGTTGAATT+AGG | - | chr4.3:87978098-87978117 | MS.gene65412:intron | 20.0% |
| !!! | AGAAAGTTTCATGTAAATTT+TGG | - | chr4.3:87979624-87979643 | MS.gene65412:intron | 20.0% |
| !!! | ATTTTGATTGTTAATGTTAG+TGG | - | chr4.3:87980567-87980586 | MS.gene65412:intron | 20.0% |
| !!! | CTCATATTAAGTATCTTTTA+AGG | - | chr4.3:87979873-87979892 | MS.gene65412:intron | 20.0% |
| !!! | TTGGTTTTGTAAATTTGATT+TGG | - | chr4.3:87979552-87979571 | MS.gene65412:intron | 20.0% |
| !!! | TTTGGGTTTATATCAATAAT+GGG | - | chr4.3:87977923-87977942 | MS.gene65412:intron | 20.0% |
| ! | AAAAAAGTAGATTGAAAGTC+AGG | - | chr4.3:87978655-87978674 | MS.gene65412:intron | 25.0% |
| ! | AAAAAGTAGATTGAAAGTCA+GGG | - | chr4.3:87978656-87978675 | MS.gene65412:intron | 25.0% |
| ! | AAAACACTTGATGGAATAAA+TGG | - | chr4.3:87978367-87978386 | MS.gene65412:intron | 25.0% |
| ! | AAAGTTTCCTGACAAAAAAA+GGG | - | chr4.3:87979255-87979274 | MS.gene65412:intron | 25.0% |
| ! | AATGAGTTTAATTGGCTAAA+TGG | - | chr4.3:87979947-87979966 | MS.gene65412:intron | 25.0% |
| ! | CTATAATTGAGGTTGAAATA+AGG | + | chr4.3:87978026-87978045 | None:intergenic | 25.0% |
| ! | CTTACTTATAAACTATGTTC+CGG | + | chr4.3:87978090-87978109 | None:intergenic | 25.0% |
| ! | GGAACATAGTAACAATAATT+GGG | - | chr4.3:87978388-87978407 | MS.gene65412:intron | 25.0% |
| ! | TAAAGAAAAATAATCAGGTC+TGG | - | chr4.3:87978602-87978621 | MS.gene65412:intron | 25.0% |
| ! | TATCTCTTAATGTCTCTTAT+TGG | - | chr4.3:87978789-87978808 | MS.gene65412:intron | 25.0% |
| ! | TATTAAAATAGTTAGTGGAG+TGG | - | chr4.3:87979977-87979996 | MS.gene65412:intron | 25.0% |
| ! | TGGAACATAGTAACAATAAT+TGG | - | chr4.3:87978387-87978406 | MS.gene65412:intron | 25.0% |
| ! | TTGAGTTTATGTATCTTGTT+AGG | - | chr4.3:87980658-87980677 | MS.gene65412:intron | 25.0% |
| !! | AACTGTTCTGTTTCATTTTA+AGG | - | chr4.3:87980211-87980230 | MS.gene65412:intron | 25.0% |
| !! | ACTGTTCTGTTTCATTTTAA+GGG | - | chr4.3:87980212-87980231 | MS.gene65412:intron | 25.0% |
| !! | ATCTTCTTTTTCCTTAAAAC+AGG | + | chr4.3:87979111-87979130 | None:intergenic | 25.0% |
| !! | CTTTGGGTTTATATCAATAA+TGG | - | chr4.3:87977922-87977941 | MS.gene65412:intron | 25.0% |
| !! | GGATTTTAGATTAACTTTTC+CGG | - | chr4.3:87978985-87979004 | MS.gene65412:intron | 25.0% |
| !! | GTAATTTTGAATTTCCAAAC+AGG | - | chr4.3:87981173-87981192 | MS.gene65412:intron | 25.0% |
| !! | TTTTGTTAAGAGTCCTATAT+TGG | - | chr4.3:87978053-87978072 | MS.gene65412:intron | 25.0% |
| !!! | AAAAAGAAGATGGATTAAAG+GGG | - | chr4.3:87979120-87979139 | MS.gene65412:intron | 25.0% |
| !!! | ATCTCTGTTTCAACTTTTTT+TGG | - | chr4.3:87979190-87979209 | MS.gene65412:intron | 25.0% |
| !!! | GAAAAAGAAGATGGATTAAA+GGG | - | chr4.3:87979119-87979138 | MS.gene65412:intron | 25.0% |
| !!! | GACTTTCAATCTACTTTTTT+TGG | + | chr4.3:87978655-87978674 | None:intergenic | 25.0% |
| !!! | TGGTTTTGCAAAATTGATTT+TGG | + | chr4.3:87979044-87979063 | None:intergenic | 25.0% |
| !!! | TGTTTTAAGGAAAAAGAAGA+TGG | - | chr4.3:87979110-87979129 | MS.gene65412:intron | 25.0% |
| !!! | TTTCAATCTACTTTTTTTGG+AGG | + | chr4.3:87978652-87978671 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAACCAGAAGAAA+CGG | + | chr4.3:87980297-87980316 | None:intergenic | 25.0% |
| AAACCATGGTACAGAAAAAA+CGG | + | chr4.3:87977814-87977833 | None:intergenic | 30.0% | |
| AAGAGACCAAGTAAAACTAT+AGG | + | chr4.3:87978820-87978839 | None:intergenic | 30.0% | |
| AAGTTTCCTGACAAAAAAAG+GGG | - | chr4.3:87979256-87979275 | MS.gene65412:intron | 30.0% | |
| AATCAGAAGAATGACAGTTA+TGG | - | chr4.3:87979735-87979754 | MS.gene65412:intron | 30.0% | |
| AGAAACGTACAATAACAGTA+TGG | + | chr4.3:87979366-87979385 | None:intergenic | 30.0% | |
| ATATAGGATTGACCAAATGA+AGG | + | chr4.3:87978866-87978885 | None:intergenic | 30.0% | |
| ATGAGTAAATGAAGTTCTTC+GGG | - | chr4.3:87978449-87978468 | MS.gene65412:intron | 30.0% | |
| CATGAGTAAATGAAGTTCTT+CGG | - | chr4.3:87978448-87978467 | MS.gene65412:intron | 30.0% | |
| CGGAACATAGTTTATAAGTA+AGG | - | chr4.3:87978088-87978107 | MS.gene65412:intron | 30.0% | |
| GAAACGTACAATAACAGTAT+GGG | + | chr4.3:87979365-87979384 | None:intergenic | 30.0% | |
| GAAAGTTTCCTGACAAAAAA+AGG | - | chr4.3:87979254-87979273 | MS.gene65412:intron | 30.0% | |
| GATACTTAATATGAGACAGA+TGG | + | chr4.3:87979868-87979887 | None:intergenic | 30.0% | |
| TATTCTATTAAACCGAGACT+TGG | - | chr4.3:87981102-87981121 | MS.gene65412:intron | 30.0% | |
| TCAATCTCATCAAGATTACT+TGG | - | chr4.3:87981264-87981283 | MS.gene65412:CDS | 30.0% | |
| TCATCAAGATTACTTGGAAA+AGG | - | chr4.3:87981270-87981289 | MS.gene65412:CDS | 30.0% | |
| TGTATAAATGGATACCTGTT+TGG | + | chr4.3:87981190-87981209 | None:intergenic | 30.0% | |
| TTCACACTGATCATTCTAAA+AGG | - | chr4.3:87979458-87979477 | MS.gene65412:intron | 30.0% | |
| ! | AAAGTAAAGTGATTTGTGTC+CGG | + | chr4.3:87979007-87979026 | None:intergenic | 30.0% |
| ! | CTGTTAGTAGTTAAGGTATT+TGG | - | chr4.3:87980544-87980563 | MS.gene65412:intron | 30.0% |
| ! | TATATTGGATATGATGATGC+CGG | - | chr4.3:87978068-87978087 | MS.gene65412:intron | 30.0% |
| ! | TCTTCTGATTGTTTCTTATG+CGG | + | chr4.3:87979725-87979744 | None:intergenic | 30.0% |
| ! | TGGATTAAAAGTGATTTTCG+AGG | + | chr4.3:87978569-87978588 | None:intergenic | 30.0% |
| ! | TTTTTGTAACCAGAAGAAAC+GGG | + | chr4.3:87980296-87980315 | None:intergenic | 30.0% |
| !! | GGAAAAAGAAGATGGATTAA+AGG | - | chr4.3:87979118-87979137 | MS.gene65412:intron | 30.0% |
| !! | GTATGTCCTATAGTTTTACT+TGG | - | chr4.3:87978811-87978830 | MS.gene65412:intron | 30.0% |
| !! | GTTGTTTCTATTCTGTACTT+AGG | - | chr4.3:87980988-87981007 | MS.gene65412:intron | 30.0% |
| !! | GTTTCATTTTAAGGGTATAC+TGG | - | chr4.3:87980220-87980239 | MS.gene65412:intron | 30.0% |
| !! | TATTCTGAGATCTTTGACTA+CGG | + | chr4.3:87979286-87979305 | None:intergenic | 30.0% |
| !! | TCCTAACAATTGCTTTTGTT+TGG | + | chr4.3:87979236-87979255 | None:intergenic | 30.0% |
| !!! | TCTGTTTCAACTTTTTTTGG+TGG | - | chr4.3:87979193-87979212 | MS.gene65412:intron | 30.0% |
| AACCTAATGTAAATGCTACC+AGG | - | chr4.3:87979659-87979678 | MS.gene65412:intron | 35.0% | |
| AACCTGGTAGCATTTACATT+AGG | + | chr4.3:87979664-87979683 | None:intergenic | 35.0% | |
| ACTTGCCTTCATGTATGTTT+GGG | - | chr4.3:87979501-87979520 | MS.gene65412:intron | 35.0% | |
| AGAACAAAGCTTTGCAATGA+AGG | + | chr4.3:87980332-87980351 | None:intergenic | 35.0% | |
| AGTAACAATAATTGGGAGCA+TGG | - | chr4.3:87978395-87978414 | MS.gene65412:intron | 35.0% | |
| AGTTTCCTGACAAAAAAAGG+GGG | - | chr4.3:87979257-87979276 | MS.gene65412:intron | 35.0% | |
| ATATAGTAGGGTCAGAAACT+GGG | - | chr4.3:87980958-87980977 | MS.gene65412:intron | 35.0% | |
| CCTATATATCGATGCTTCAA+CGG | - | chr4.3:87978879-87978898 | MS.gene65412:intron | 35.0% | |
| CGTTAACTTTGCTTGATGTT+TGG | + | chr4.3:87981154-87981173 | None:intergenic | 35.0% | |
| CTATATATCGATGCTTCAAC+GGG | - | chr4.3:87978880-87978899 | MS.gene65412:intron | 35.0% | |
| CTCTGTTCTGTTAGTAGTTA+AGG | - | chr4.3:87980537-87980556 | MS.gene65412:intron | 35.0% | |
| GAAGAATGACAGTTATGGTT+AGG | - | chr4.3:87979740-87979759 | MS.gene65412:intron | 35.0% | |
| GCCAAACAAAAGCAATTGTT+AGG | - | chr4.3:87979232-87979251 | MS.gene65412:intron | 35.0% | |
| GGAATTTAATGGTGATTACG+AGG | - | chr4.3:87979801-87979820 | MS.gene65412:intron | 35.0% | |
| GGCATCATCATATCCAATAT+AGG | + | chr4.3:87978069-87978088 | None:intergenic | 35.0% | |
| TATATAGTAGGGTCAGAAAC+TGG | - | chr4.3:87980957-87980976 | MS.gene65412:intron | 35.0% | |
| TGATTGTTGTGTCCTTCATT+TGG | - | chr4.3:87978851-87978870 | MS.gene65412:intron | 35.0% | |
| TTACTCATGAACCTTAGTCA+AGG | + | chr4.3:87978437-87978456 | None:intergenic | 35.0% | |
| TTCTCAACTCAGTGCATATA+TGG | + | chr4.3:87978940-87978959 | None:intergenic | 35.0% | |
| ! | ATTTTCAGTGCCAATTACAG+TGG | + | chr4.3:87978241-87978260 | None:intergenic | 35.0% |
| ! | GTTGTTCTTCTCTGTTTTGT+TGG | - | chr4.3:87980421-87980440 | MS.gene65412:intron | 35.0% |
| ! | TCACACTAAGACCTGTTTTA+AGG | - | chr4.3:87979097-87979116 | MS.gene65412:intron | 35.0% |
| ! | TTTTCAGTGCCAATTACAGT+GGG | + | chr4.3:87978240-87978259 | None:intergenic | 35.0% |
| !! | ATGTTGAAGCGTCGATATAT+AGG | + | chr4.3:87978910-87978929 | None:intergenic | 35.0% |
| !!! | ATTGATGTTTTGATCCTGCA+AGG | + | chr4.3:87981249-87981268 | None:intergenic | 35.0% |
| AACTCATTGTCTCCAAGTCT+CGG | + | chr4.3:87981117-87981136 | None:intergenic | 40.0% | |
| AAGGACACAACAATCACTAG+AGG | + | chr4.3:87978847-87978866 | None:intergenic | 40.0% | |
| ACGTACAATAACAGTATGGG+TGG | + | chr4.3:87979362-87979381 | None:intergenic | 40.0% | |
| AGTATGGGTGGAATGTATTG+TGG | + | chr4.3:87979350-87979369 | None:intergenic | 40.0% | |
| ATACAACAATGCAGCTGTAC+AGG | + | chr4.3:87981027-87981046 | None:intergenic | 40.0% | |
| ATCCATGATTGGCAACATAG+AGG | - | chr4.3:87980779-87980798 | MS.gene65412:intron | 40.0% | |
| CAAACACGCAAAACACTTGA+TGG | - | chr4.3:87978358-87978377 | MS.gene65412:intron | 40.0% | |
| CAAACATACATGAAGGCAAG+TGG | + | chr4.3:87979502-87979521 | None:intergenic | 40.0% | |
| CACTTGCCTTCATGTATGTT+TGG | - | chr4.3:87979500-87979519 | MS.gene65412:intron | 40.0% | |
| CCATGGTTTCTTATGAACAG+AGG | - | chr4.3:87977825-87977844 | MS.gene65412:intron | 40.0% | |
| CCTCTGTTCATAAGAAACCA+TGG | + | chr4.3:87977828-87977847 | None:intergenic | 40.0% | |
| GCAAAAGCAAAAGTGAAGAG+CGG | - | chr4.3:87977702-87977721 | MS.gene65412:CDS | 40.0% | |
| TACAACAATGCAGCTGTACA+GGG | + | chr4.3:87981026-87981045 | None:intergenic | 40.0% | |
| TAGTCCCGACAAATGGAAAA+AGG | + | chr4.3:87978708-87978727 | None:intergenic | 40.0% | |
| TGGAAAAGGCTGATAAAGCA+AGG | - | chr4.3:87981284-87981303 | MS.gene65412:CDS | 40.0% | |
| TTGAGCTTATGTTTCCTTGC+AGG | - | chr4.3:87981232-87981251 | MS.gene65412:CDS | 40.0% | |
| ! | CAAGCCTTTTTCCATTTGTC+GGG | - | chr4.3:87978701-87978720 | MS.gene65412:intron | 40.0% |
| ! | CCAAGCCTTTTTCCATTTGT+CGG | - | chr4.3:87978700-87978719 | MS.gene65412:intron | 40.0% |
| ! | CGCGCTACTATTGATAACAT+AGG | + | chr4.3:87980017-87980036 | None:intergenic | 40.0% |
| ! | CTTTTCAACCCAAGGTCAAA+GGG | + | chr4.3:87978523-87978542 | None:intergenic | 40.0% |
| ! | TTCTTCGGGCAATTCTAGTT+TGG | - | chr4.3:87978463-87978482 | MS.gene65412:intron | 40.0% |
| !! | AAGAAGATGGATTAAAGGGG+AGG | - | chr4.3:87979123-87979142 | MS.gene65412:intron | 40.0% |
| !! | AGGTTCAATTTTAACCCCCT+TGG | + | chr4.3:87978329-87978348 | None:intergenic | 40.0% |
| !! | CCGTTGAAGCATCGATATAT+AGG | + | chr4.3:87978882-87978901 | None:intergenic | 40.0% |
| !! | GGTTCAATTTTAACCCCCTT+GGG | + | chr4.3:87978328-87978347 | None:intergenic | 40.0% |
| !!! | ATCAAGGTTTTGGATGAGCT+TGG | - | chr4.3:87979533-87979552 | MS.gene65412:intron | 40.0% |
| AAAGTCCAACCTCGAGCAAA+AGG | + | chr4.3:87978185-87978204 | None:intergenic | 45.0% | |
| AACGCCACTCCTATTGAATG+TGG | + | chr4.3:87980105-87980124 | None:intergenic | 45.0% | |
| ACAACTGCGTAGCTTCGTAT+AGG | + | chr4.3:87980406-87980425 | None:intergenic | 45.0% | |
| AGCCTCTATGTTGCCAATCA+TGG | + | chr4.3:87980784-87980803 | None:intergenic | 45.0% | |
| AGTGATTGTGCTGCAATTCG+CGG | + | chr4.3:87980133-87980152 | None:intergenic | 45.0% | |
| ATACAGCTAGTCCCGACAAA+TGG | + | chr4.3:87978715-87978734 | None:intergenic | 45.0% | |
| ATGGTGATTACGAGGCAGTT+AGG | - | chr4.3:87979809-87979828 | MS.gene65412:intron | 45.0% | |
| ATTCGCAAACCCGTTTCTTC+TGG | - | chr4.3:87980284-87980303 | MS.gene65412:intron | 45.0% | |
| CAGTCTTCTTCACACACAGA+AGG | + | chr4.3:87980458-87980477 | None:intergenic | 45.0% | |
| CCAAACTAGCCCACTGTAAT+TGG | - | chr4.3:87978228-87978247 | MS.gene65412:intron | 45.0% | |
| CCGACAAATGGAAAAAGGCT+TGG | + | chr4.3:87978703-87978722 | None:intergenic | 45.0% | |
| CGACTCAGAAGTGATAAACC+TGG | + | chr4.3:87979680-87979699 | None:intergenic | 45.0% | |
| CGAGGCTATCAATCAAGCTA+GGG | + | chr4.3:87978551-87978570 | None:intergenic | 45.0% | |
| GAACACCAAAACTGCTACAG+CGG | + | chr4.3:87980743-87980762 | None:intergenic | 45.0% | |
| GTAGATTGAAAGTCAGGGTC+AGG | - | chr4.3:87978661-87978680 | MS.gene65412:intron | 45.0% | |
| GTTAGTGGAGTGGAGTAGTT+AGG | - | chr4.3:87979987-87980006 | MS.gene65412:intron | 45.0% | |
| TCAAAGGGAAGACTGGTGAA+AGG | + | chr4.3:87978508-87978527 | None:intergenic | 45.0% | |
| TCCAAAACCTTGATAGACGC+TGG | + | chr4.3:87979527-87979546 | None:intergenic | 45.0% | |
| TCCTATTGAATGTGGCTCAC+AGG | + | chr4.3:87980097-87980116 | None:intergenic | 45.0% | |
| TCCTGTGAGCCACATTCAAT+AGG | - | chr4.3:87980093-87980112 | MS.gene65412:intron | 45.0% | |
| TCGAGGCTATCAATCAAGCT+AGG | + | chr4.3:87978552-87978571 | None:intergenic | 45.0% | |
| TCTATAACCGTAGACTGTCC+TGG | - | chr4.3:87979324-87979343 | MS.gene65412:intron | 45.0% | |
| TCTTCTTCACACACAGAAGG+AGG | + | chr4.3:87980455-87980474 | None:intergenic | 45.0% | |
| TGAGCCACATTCAATAGGAG+TGG | - | chr4.3:87980098-87980117 | MS.gene65412:intron | 45.0% | |
| TGTTACTCGTTCGCCTTCTA+GGG | - | chr4.3:87980152-87980171 | MS.gene65412:intron | 45.0% | |
| TTGCGTGTTTGATTCACGTC+AGG | + | chr4.3:87978349-87978368 | None:intergenic | 45.0% | |
| ! | ACATACCTTTTGCTCGAGGT+TGG | - | chr4.3:87978177-87978196 | MS.gene65412:intron | 45.0% |
| ! | AGTTTGGCTCGTCATTTACC+TGG | - | chr4.3:87978479-87978498 | MS.gene65412:intron | 45.0% |
| ! | CCAAACATACCTTTTGCTCG+AGG | - | chr4.3:87978173-87978192 | MS.gene65412:intron | 45.0% |
| ! | CCTCGAGCAAAAGGTATGTT+TGG | + | chr4.3:87978176-87978195 | None:intergenic | 45.0% |
| ! | CCTTTTCAACCCAAGGTCAA+AGG | + | chr4.3:87978524-87978543 | None:intergenic | 45.0% |
| ! | GGGTTTTCCTTTTCAACCCA+AGG | + | chr4.3:87978531-87978550 | None:intergenic | 45.0% |
| !! | AAGACTGGTGAAAGGTATCC+AGG | + | chr4.3:87978500-87978519 | None:intergenic | 45.0% |
| !! | CAATTTTAACCCCCTTGGGA+TGG | + | chr4.3:87978324-87978343 | None:intergenic | 45.0% |
| !! | CCAATTACAGTGGGCTAGTT+TGG | + | chr4.3:87978231-87978250 | None:intergenic | 45.0% |
| !! | CCTTTGACCTTGGGTTGAAA+AGG | - | chr4.3:87978521-87978540 | MS.gene65412:intron | 45.0% |
| !! | GAGAAGAAGCATGTTTTCGC+TGG | - | chr4.3:87977771-87977790 | MS.gene65412:intron | 45.0% |
| !!! | CTGCCGTTTTTTCTGTACCA+TGG | - | chr4.3:87977808-87977827 | MS.gene65412:intron | 45.0% |
| !!! | GCTGTAGCAGTTTTGGTGTT+CGG | - | chr4.3:87980742-87980761 | MS.gene65412:intron | 45.0% |
| !!! | GGTTTCCCCCTTTTTTTGTC+AGG | + | chr4.3:87979265-87979284 | None:intergenic | 45.0% |
| AAAACTGCTACAGCGGAGAG+AGG | + | chr4.3:87980736-87980755 | None:intergenic | 50.0% | |
| AAACTGCTACAGCGGAGAGA+GGG | + | chr4.3:87980735-87980754 | None:intergenic | 50.0% | |
| ACCAGTCTTCCCTTTGACCT+TGG | - | chr4.3:87978511-87978530 | MS.gene65412:intron | 50.0% | |
| ACTGCGTAGCTTCGTATAGG+AGG | + | chr4.3:87980403-87980422 | None:intergenic | 50.0% | |
| ACTTCTGAGTCGAACCACGA+TGG | - | chr4.3:87979688-87979707 | MS.gene65412:intron | 50.0% | |
| AGCTTTGCGCAGGGAAACAA+AGG | + | chr4.3:87980366-87980385 | None:intergenic | 50.0% | |
| ATTGTGGCCAGGACAGTCTA+CGG | + | chr4.3:87979334-87979353 | None:intergenic | 50.0% | |
| CCAGTCTTCCCTTTGACCTT+GGG | - | chr4.3:87978512-87978531 | MS.gene65412:intron | 50.0% | |
| CTGTTACTCGTTCGCCTTCT+AGG | - | chr4.3:87980151-87980170 | MS.gene65412:intron | 50.0% | |
| GCAGCTTGAGTCCTTGACTA+AGG | - | chr4.3:87978423-87978442 | MS.gene65412:intron | 50.0% | |
| GCCAATCATGGATAGCAGCA+CGG | + | chr4.3:87980772-87980791 | None:intergenic | 50.0% | |
| GCTGGCCCAAACATACATGA+AGG | + | chr4.3:87979509-87979528 | None:intergenic | 50.0% | |
| TCGAACCTGAGACCTTTGAG+AGG | - | chr4.3:87978263-87978282 | MS.gene65412:intron | 50.0% | |
| TTCAATAGGAGTGGCGTTCG+TGG | - | chr4.3:87980107-87980126 | MS.gene65412:intron | 50.0% | |
| TTGGAGTGTGCTCCTCTCAA+AGG | + | chr4.3:87978278-87978297 | None:intergenic | 50.0% | |
| TTTCACCCGCAAACCCTAGA+AGG | + | chr4.3:87980168-87980187 | None:intergenic | 50.0% | |
| ! | ACAGCTTTGTAGCTTTGCGC+AGG | + | chr4.3:87980376-87980395 | None:intergenic | 50.0% |
| ! | CAGCTTTGTAGCTTTGCGCA+GGG | + | chr4.3:87980375-87980394 | None:intergenic | 50.0% |
| ! | CGGTCTAACTGATTCCATCG+TGG | + | chr4.3:87979705-87979724 | None:intergenic | 50.0% |
| ! | GCCAGCGTCTATCAAGGTTT+TGG | - | chr4.3:87979523-87979542 | MS.gene65412:intron | 50.0% |
| ! | GCGAAGGTGGATTTGGATCA+AGG | - | chr4.3:87977724-87977743 | MS.gene65412:CDS | 50.0% |
| ! | TCCGTGCTGCTATCCATGAT+TGG | - | chr4.3:87980768-87980787 | MS.gene65412:intron | 50.0% |
| ! | TCTCTCCGCTGTAGCAGTTT+TGG | - | chr4.3:87980735-87980754 | MS.gene65412:intron | 50.0% |
| !! | GTGGTGTTGGCTTGAGACTT+TGG | + | chr4.3:87978297-87978316 | None:intergenic | 50.0% |
| AAAGTGAAGAGCGGCGAAGG+TGG | - | chr4.3:87977711-87977730 | MS.gene65412:CDS | 55.0% | |
| AGTCTCAAGCCAACACCACC+AGG | - | chr4.3:87978298-87978317 | MS.gene65412:intron | 55.0% | |
| CCCAAGGTCAAAGGGAAGAC+TGG | + | chr4.3:87978515-87978534 | None:intergenic | 55.0% | |
| GCAAAAGTGAAGAGCGGCGA+AGG | - | chr4.3:87977708-87977727 | MS.gene65412:CDS | 55.0% | |
| GGGTGGAATGTATTGTGGCC+AGG | + | chr4.3:87979345-87979364 | None:intergenic | 55.0% | |
| GTGCTCCTCTCAAAGGTCTC+AGG | + | chr4.3:87978271-87978290 | None:intergenic | 55.0% | |
| GTTTGGGCCAGCGTCTATCA+AGG | - | chr4.3:87979517-87979536 | MS.gene65412:intron | 55.0% | |
| ! | AAGAGCGGCGAAGGTGGATT+TGG | - | chr4.3:87977717-87977736 | MS.gene65412:CDS | 55.0% |
| !! | CGTTCGCCTTCTAGGGTTTG+CGG | - | chr4.3:87980159-87980178 | MS.gene65412:intron | 55.0% |
| !! | GTTCGCCTTCTAGGGTTTGC+GGG | - | chr4.3:87980160-87980179 | MS.gene65412:intron | 55.0% |
| AACACCACCAGGCCATCCCA+AGG | - | chr4.3:87978309-87978328 | MS.gene65412:intron | 60.0% | |
| ACACCACCAGGCCATCCCAA+GGG | - | chr4.3:87978310-87978329 | MS.gene65412:intron | 60.0% | |
| GGGTCAGAAACTGGGCAGAG+AGG | - | chr4.3:87980966-87980985 | MS.gene65412:intron | 60.0% | |
| TTAACCCCCTTGGGATGGCC+TGG | + | chr4.3:87978319-87978338 | None:intergenic | 60.0% | |
| ! | TTGGGATGGCCTGGTGGTGT+TGG | + | chr4.3:87978310-87978329 | None:intergenic | 60.0% |
| ACCACCAGGCCATCCCAAGG+GGG | - | chr4.3:87978312-87978331 | MS.gene65412:intron | 65.0% | |
| CACCACCAGGCCATCCCAAG+GGG | - | chr4.3:87978311-87978330 | MS.gene65412:intron | 65.0% | |
| ACCCCCTTGGGATGGCCTGG+TGG | + | chr4.3:87978316-87978335 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87977690 | 87981345 | 87977690 | ID=MS.gene65412 |
| chr4.3 | mRNA | 87977690 | 87981345 | 87977690 | ID=MS.gene65412.t1;Parent=MS.gene65412 |
| chr4.3 | exon | 87981189 | 87981345 | 87981189 | ID=MS.gene65412.t1.exon1;Parent=MS.gene65412.t1 |
| chr4.3 | CDS | 87981189 | 87981345 | 87981189 | ID=cds.MS.gene65412.t1;Parent=MS.gene65412.t1 |
| chr4.3 | exon | 87977690 | 87977781 | 87977690 | ID=MS.gene65412.t1.exon2;Parent=MS.gene65412.t1 |
| chr4.3 | CDS | 87977690 | 87977781 | 87977690 | ID=cds.MS.gene65412.t1;Parent=MS.gene65412.t1 |
| Gene Sequence |
| Protein sequence |
