AlfalfaGEDB | MS.gene65412

M. sativa cultivar XinJiangDaYe / MS.gene65412

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65412.t1	XP_003604268.2	97.6	82	2	0	1	82	1	82	5.80E-35	156.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65412.t1	G7JEH5	97.6	82	2	0	1	82	1	82	4.2e-35	156.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene65412	0.814832	1.26E-51	-1.69E-46
MS.gene049166	MS.gene65412	0.801733	7.83E-49	-1.69E-46
MS.gene04917	MS.gene65412	0.809725	1.64E-50	-1.69E-46
MS.gene049703	MS.gene65412	-0.825857	3.73E-54	-1.69E-46
MS.gene049756	MS.gene65412	0.819538	1.10E-52	-1.69E-46
MS.gene04984	MS.gene65412	0.81093	9.02E-51	-1.69E-46
MS.gene050114	MS.gene65412	0.823069	1.69E-53	-1.69E-46
MS.gene050277	MS.gene65412	0.841092	5.86E-58	-1.69E-46
MS.gene050317	MS.gene65412	0.84909	4.04E-60	-1.69E-46
MS.gene050320	MS.gene65412	0.830555	2.75E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65412.t1	MTR_4g007290	97.561	82	2	0	1	82	1	82	1.22e-54	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65412.t1	AT1G16000	53.488	86	36	1	1	82	1	86	1.37e-29	100
MS.gene65412.t1	AT1G80890	58.537	82	32	1	1	82	1	80	1.54e-22	82.8

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Find 12 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAAGAGCGGCGAAGG+TGG	0.576268	4.3:-87981302	MS.gene65412:CDS
AAGAGCGGCGAAGGTGGATT+TGG	0.337625	4.3:-87981296	MS.gene65412:CDS
CCATGGTTTCTTATGAACAG+AGG	0.615850	4.3:-87981188	MS.gene65412:intron
CCTCTGTTCATAAGAAACCA+TGG	0.639570	4.3:+87981188	None:intergenic
CGAGATCATTTGGAAGAAGC+AGG	0.431451	4.3:+87977685	None:intergenic
GCAAAAGCAAAAGTGAAGAG+CGG	0.660636	4.3:-87981311	MS.gene65412:CDS
GCAAAAGTGAAGAGCGGCGA+AGG	0.559375	4.3:-87981305	MS.gene65412:CDS
GCGAAGGTGGATTTGGATCA+AGG	0.444650	4.3:-87981289	MS.gene65412:CDS
TCAATCTCATCAAGATTACT+TGG	0.473577	4.3:-87977749	MS.gene65412:CDS
TCATCAAGATTACTTGGAAA+AGG	0.468209	4.3:-87977743	MS.gene65412:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATGGTACAGAAAAAA+CGG	+	chr4.3:87977814-87977833	None:intergenic	30.0%
AAGAGACCAAGTAAAACTAT+AGG	+	chr4.3:87978820-87978839	None:intergenic	30.0%
AAGTTTCCTGACAAAAAAAG+GGG	-	chr4.3:87979256-87979275	MS.gene65412:intron	30.0%
AATCAGAAGAATGACAGTTA+TGG	-	chr4.3:87979735-87979754	MS.gene65412:intron	30.0%
AGAAACGTACAATAACAGTA+TGG	+	chr4.3:87979366-87979385	None:intergenic	30.0%
ATATAGGATTGACCAAATGA+AGG	+	chr4.3:87978866-87978885	None:intergenic	30.0%
ATGAGTAAATGAAGTTCTTC+GGG	-	chr4.3:87978449-87978468	MS.gene65412:intron	30.0%
CATGAGTAAATGAAGTTCTT+CGG	-	chr4.3:87978448-87978467	MS.gene65412:intron	30.0%
CGGAACATAGTTTATAAGTA+AGG	-	chr4.3:87978088-87978107	MS.gene65412:intron	30.0%
GAAACGTACAATAACAGTAT+GGG	+	chr4.3:87979365-87979384	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	87977690	87981345	87977690	ID=MS.gene65412
chr4.3	mRNA	87977690	87981345	87977690	ID=MS.gene65412.t1;Parent=MS.gene65412
chr4.3	exon	87981189	87981345	87981189	ID=MS.gene65412.t1.exon1;Parent=MS.gene65412.t1
chr4.3	CDS	87981189	87981345	87981189	ID=cds.MS.gene65412.t1;Parent=MS.gene65412.t1
chr4.3	exon	87977690	87977781	87977690	ID=MS.gene65412.t1.exon2;Parent=MS.gene65412.t1
chr4.3	CDS	87977690	87977781	87977690	ID=cds.MS.gene65412.t1;Parent=MS.gene65412.t1

Gene Sequence

>MS.gene65412

ATGAGCAACGAAGCAAAAGCAAAAGTGAAGAGCGGCGAAGGTGGATTTGGATCAAGGTTGAATCAAATTCTATATAGCGGTGAGAAGAAGCATGTTTTCGCTGGCTTAGTTCTCATCACTGCCGTTTTTTCTGTACCATGGTTTCTTATGAACAGAGGTTCGTATTTGTTTCAACTTTATAATTGTGAATTTTTCTTCAATATATAATTGAAATTAGTTTCAAAGTTATTAACTTTGGGTTTATATCAATAATGGGTTGTCATTAGCTTAATTCAATAATATCTCTAAGATAACTTATGAAATTAGTTCATAAGTTATATGAAAATAGTCTAGCCTTATTTCAACCTCAATTATAGAAATAACTTTTGTTAAGAGTCCTATATTGGATATGATGATGCCGGAACATAGTTTATAAGTAAGGTTGAATTAGGCTCAACCCAAATTCTAATAACTTTTATACAATAGCATAATTAAGTTGTTTATCCAAACATACCTTTTGCTCGAGGTTGGACTTTTGCACAACACTTTTTTTTTAAAGCCAAACTAGCCCACTGTAATTGGCACTGAAAATAATCGAACCTGAGACCTTTGAGAGGAGCACACTCCAAAGTCTCAAGCCAACACCACCAGGCCATCCCAAGGGGGTTAAAATTGAACCTGACGTGAATCAAACACGCAAAACACTTGATGGAATAAATGGAACATAGTAACAATAATTGGGAGCATGGAACTAGCAGCTTGAGTCCTTGACTAAGGTTCATGAGTAAATGAAGTTCTTCGGGCAATTCTAGTTTGGCTCGTCATTTACCTGGATACCTTTCACCAGTCTTCCCTTTGACCTTGGGTTGAAAAGGAAAACCCTAGCTTGATTGATAGCCTCGAAAATCACTTTTAATCCAAGAGAAAGTTATTTAAAGAAAAATAATCAGGTCTGGCTGTTCGAAGTCAAAAATATTTTTCCTCCAAAAAAAGTAGATTGAAAGTCAGGGTCAGGTTGAGAATAACAACTGCCAAGCCTTTTTCCATTTGTCGGGACTAGCTGTATGATCAAATGACATCATATTTTCTTGTTATATACTAAGTTCAAGCATAAGCAACTTATCTCTTAATGTCTCTTATTGGTATGTCCTATAGTTTTACTTGGTCTCTTTCTACCTCTAGTGATTGTTGTGTCCTTCATTTGGTCAATCCTATATATCGATGCTTCAACGGGCAATCCTATATATCGACGCTTCAACATATTTTCTCCATATATGCACTGAGTTGAGAATACCATATTAAATTTACTATAAACTGGATTTTAGATTAACTTTTCCGGACACAAATCACTTTACTTTAAATTTACTTTTAACCAAAATCAATTTTGCAAAACCAAATCATTAAAAAATTTCAAACACTTATTCAAGCTCACACTAAGACCTGTTTTAAGGAAAAAGAAGATGGATTAAAGGGGAGGTAAAGCATCCTAAGTTAACAATTTGTATTTCACATCATTATCTCATCTCTGTTTCAACTTTTTTTGGTGGCAATAAAAATTTGTCTGCCAAACAAAAGCAATTGTTAGGAAAGTTTCCTGACAAAAAAAGGGGGAAACCGTAGTCAAAGATCTCAGAATAAGTATAACACATCGACATTCTATAACCGTAGACTGTCCTGGCCACAATACATTCCACCCATACTGTTATTGTACGTTTCTATCATTTGAAATCTAGACTTCTTAAATAATAACTGTAGTACTATCAGTGATGTTTTCTTTTCAATTGTTTCTTTCACACTGATCATTCTAAAAGGTTTTATACTTAAATATTTCCACTTGCCTTCATGTATGTTTGGGCCAGCGTCTATCAAGGTTTTGGATGAGCTTGGTTTTGTAAATTTGATTTGGTTAAATCTGAGTTTGAATTGAAGTGATTTATTTATCAATGTACTCTATAAGAAAGTTTCATGTAAATTTTGGTGTAAACTTTTCAACCTAATGTAAATGCTACCAGGTTTATCACTTCTGAGTCGAACCACGATGGAATCAGTTAGACCGCATAAGAAACAATCAGAAGAATGACAGTTATGGTTAGGAAATACTTAATAACAGAATTATATAACGGAAATTATTAGGAATTTAATGGTGATTACGAGGCAGTTAGGATTAGAAAATAGCGCCTACAATTATTTATTACTCCATCTGTCTCATATTAAGTATCTTTTAAGGTTATACAGACTTCTTGAAAATCGTTAAGCGTACTGATTTTTTTTTTGAAAAAATGAGTTTAATTGGCTAAATGGCCTTTATTATTAAAATAGTTAGTGGAGTGGAGTAGTTAGGCAAACCTATGTTATCAATAGTAGCGCGATTGTGCGCAATAACAAGATAGCGAAGCTGAGACAATGTGCACTGCAATGCTTTCTTCCTGTGAGCCACATTCAATAGGAGTGGCGTTCGTGGCCGCGAATTGCAGCACAATCACTGTTACTCGTTCGCCTTCTAGGGTTTGCGGGTGAAATCCCATAAATACTCATATTTTGAAACTGTTCTGTTTCATTTTAAGGGTATACTGGTCATTATGTGTTTTTCTAAGTTGCCTATTTATTTATTCATAATTCGCAAACCCGTTTCTTCTGGTTACAAAAAACAAAGTGCTTCTCCTTCATTGCAAAGCTTTGTTCTCTCTACACAAACCTTTGTTTCCCTGCGCAAAGCTACAAAGCTGTTTCTCCTCCTATACGAAGCTACGCAGTTGTTCTTCTCTGTTTTGTTGGTTTTCTTACCTCCTTCTGTGTGTGAAGAAGACTGCTATGTTCTTCTCTGTTATGTTTGTTTTCTTTGCTTTGTTACTCTTGTCTTGTGTTCTTCTCTGTTCTGTTAGTAGTTAAGGTATTTGGATTTTGATTGTTAATGTTAGTGGAAAATGAGCGAAGATAATTATAATTACTAAGTATGATTACCCCTTTAATTTTGTGTATTTTGCTATCATTGAGTTTATGTATCTTGTTAGGATTTATGATTAATTTGTATACTGTGTTTTTTGTCTTCACAATAACTGCTATCCCTCTCTCCGCTGTAGCAGTTTTGGTGTTCGGTGCTCCGTGCTGCTATCCATGATTGGCAACATAGAGGCTAACTGAAATACAATAAATAAAGGTGTTAGTCGAAAAAATATAATTAATACTTCACTTCATTCGTATTTTAAAATGACAAATTATTATGAGACAAACAAATATTTTAAATATGAGACAGATTGAGTTGTATATAAATATAGTGAGTTGTAAATTTATATAGTAGGGTCAGAAACTGGGCAGAGAGGTTGTTTCTATTCTGTACTTAGGACAGACAATACTCCCTGTACAGCTGCATTGTTGTATTTTGTGTTCTATTATATGTCTATTTAAACTGGTGTTCTATAATATTCCTATTTGTTATTCTATTAAACCGAGACTTGGAGACAATGAGTTTTGAATCAAAATGTCCAAACATCAAGCAAAGTTAACGTAATTTTGAATTTCCAAACAGGTATCCATTTATACATTTCATTTAGTTACTTAATCTGTTGAGCTTATGTTTCCTTGCAGGATCAAAACATCAATCTCATCAAGATTACTTGGAAAAGGCTGATAAAGCAAGGAGCGAAAGACTCTCGTCAAGTCCTGCTTCTTCCAAATGA

Protein sequence

>MS.gene65412.t1

MSNEAKAKVKSGEGGFGSRLNQILYSGEKKHVFAGLVLITAVFSVPWFLMNRGSKHQSHQDYLEKADKARSERLSSSPASSK