AlfalfaGEDB | MS.gene76478

M. sativa cultivar XinJiangDaYe / MS.gene76478

KEGG: K09578
GO: GO:0003674 GO:0003755 GO:0003824 GO:0016853 GO:0016859 GO:0140096
PFAM: PF00639.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76478.t1	XP_003629341.1	98.8	82	1	0	1	82	1	82	1.00E-35	159.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76478.t1	Q94G00	77.5	80	18	0	3	82	2	81	3.5e-29	128.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76478.t1	G7LCY6	98.8	82	1	0	1	82	1	82	7.3e-36	159.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049166	MS.gene76478	0.821051	4.96E-53	-1.69E-46
MS.gene049703	MS.gene76478	-0.817172	3.79E-52	-1.69E-46
MS.gene049756	MS.gene76478	0.831812	1.35E-55	-1.69E-46
MS.gene04984	MS.gene76478	0.807537	4.81E-50	-1.69E-46
MS.gene049887	MS.gene76478	0.816871	4.42E-52	-1.69E-46
MS.gene050085	MS.gene76478	0.824535	7.66E-54	-1.69E-46
MS.gene050114	MS.gene76478	0.856784	2.55E-62	-1.69E-46
MS.gene050277	MS.gene76478	0.862842	3.80E-64	-1.69E-46
MS.gene050317	MS.gene76478	0.841651	4.18E-58	-1.69E-46
MS.gene050320	MS.gene76478	0.827004	1.99E-54	-1.69E-46
MS.gene050689	MS.gene76478	0.823909	1.07E-53	-1.69E-46
MS.gene050735	MS.gene76478	0.800558	1.36E-48	-1.69E-46
MS.gene050752	MS.gene76478	0.816736	4.74E-52	-1.69E-46
MS.gene050838	MS.gene76478	0.873277	1.66E-67	-1.69E-46
MS.gene050992	MS.gene76478	0.803413	3.53E-49	-1.69E-46
MS.gene051003	MS.gene76478	0.814673	1.37E-51	-1.69E-46
MS.gene051063	MS.gene76478	0.835909	1.28E-56	-1.69E-46
MS.gene051233	MS.gene76478	0.822052	2.91E-53	-1.69E-46
MS.gene051243	MS.gene76478	0.826842	2.17E-54	-1.69E-46
MS.gene051245	MS.gene76478	0.86984	2.29E-66	-1.69E-46
MS.gene051328	MS.gene76478	0.822376	2.45E-53	-1.69E-46
MS.gene051343	MS.gene76478	0.81896	1.49E-52	-1.69E-46
MS.gene051451	MS.gene76478	0.815281	1.00E-51	-1.69E-46
MS.gene051746	MS.gene76478	0.840689	7.47E-58	-1.69E-46
MS.gene051748	MS.gene76478	0.865303	6.51E-65	-1.69E-46
MS.gene051756	MS.gene76478	0.853149	2.89E-61	-1.69E-46
MS.gene051757	MS.gene76478	0.835362	1.75E-56	-1.69E-46
MS.gene051850	MS.gene76478	0.842548	2.42E-58	-1.69E-46
MS.gene051903	MS.gene76478	0.854555	1.14E-61	-1.69E-46
MS.gene051975	MS.gene76478	0.809701	1.66E-50	-1.69E-46
MS.gene052133	MS.gene76478	0.802756	4.82E-49	-1.69E-46
MS.gene052202	MS.gene76478	0.80392	2.77E-49	-1.69E-46
MS.gene052286	MS.gene76478	0.823243	1.54E-53	-1.69E-46
MS.gene052397	MS.gene76478	0.816335	5.83E-52	-1.69E-46
MS.gene052434	MS.gene76478	0.82666	2.40E-54	-1.69E-46
MS.gene052856	MS.gene76478	0.836385	9.65E-57	-1.69E-46
MS.gene052858	MS.gene76478	0.804476	2.12E-49	-1.69E-46
MS.gene052860	MS.gene76478	0.801786	7.64E-49	-1.69E-46
MS.gene052947	MS.gene76478	0.831296	1.81E-55	-1.69E-46
MS.gene053058	MS.gene76478	0.853164	2.86E-61	-1.69E-46
MS.gene053109	MS.gene76478	0.864381	1.27E-64	-1.69E-46
MS.gene053167	MS.gene76478	0.803959	2.72E-49	-1.69E-46
MS.gene053381	MS.gene76478	0.815558	8.69E-52	-1.69E-46
MS.gene05380	MS.gene76478	0.825336	4.95E-54	-1.69E-46
MS.gene053952	MS.gene76478	0.828051	1.11E-54	-1.69E-46
MS.gene054403	MS.gene76478	0.810002	1.43E-50	-1.69E-46
MS.gene054823	MS.gene76478	0.810422	1.16E-50	-1.69E-46
MS.gene055311	MS.gene76478	0.838065	3.59E-57	-1.69E-46
MS.gene055413	MS.gene76478	0.805624	1.22E-49	-1.69E-46
MS.gene055424	MS.gene76478	0.850044	2.19E-60	-1.69E-46
MS.gene055441	MS.gene76478	0.85787	1.22E-62	-1.69E-46
MS.gene056097	MS.gene76478	0.837867	4.03E-57	-1.69E-46
MS.gene056181	MS.gene76478	0.837386	5.36E-57	-1.69E-46
MS.gene056432	MS.gene76478	0.844543	7.08E-59	-1.69E-46
MS.gene056580	MS.gene76478	0.85844	8.23E-63	-1.69E-46
MS.gene056631	MS.gene76478	0.843593	1.27E-58	-1.69E-46
MS.gene056752	MS.gene76478	0.809317	2.01E-50	-1.69E-46
MS.gene056760	MS.gene76478	0.822553	2.23E-53	-1.69E-46
MS.gene056787	MS.gene76478	0.851123	1.09E-60	-1.69E-46
MS.gene056992	MS.gene76478	0.814788	1.29E-51	-1.69E-46
MS.gene057057	MS.gene76478	0.863547	2.30E-64	-1.69E-46
MS.gene057094	MS.gene76478	0.871765	5.33E-67	-1.69E-46
MS.gene057140	MS.gene76478	0.84384	1.09E-58	-1.69E-46
MS.gene057234	MS.gene76478	0.882656	8.67E-71	-1.69E-46
MS.gene057360	MS.gene76478	0.801652	8.14E-49	-1.69E-46
MS.gene057451	MS.gene76478	-0.821835	3.27E-53	-1.69E-46
MS.gene057452	MS.gene76478	-0.843143	1.68E-58	-1.69E-46
MS.gene05781	MS.gene76478	0.81552	8.86E-52	-1.69E-46
MS.gene057999	MS.gene76478	0.82715	1.83E-54	-1.69E-46
MS.gene058054	MS.gene76478	0.847767	9.39E-60	-1.69E-46
MS.gene058055	MS.gene76478	0.872078	4.19E-67	-1.69E-46
MS.gene058074	MS.gene76478	0.806169	9.37E-50	-1.69E-46
MS.gene058084	MS.gene76478	0.802296	6.00E-49	-1.69E-46
MS.gene05809	MS.gene76478	0.818991	1.47E-52	-1.69E-46
MS.gene058126	MS.gene76478	0.801142	1.04E-48	-1.69E-46
MS.gene058182	MS.gene76478	0.824836	6.50E-54	-1.69E-46
MS.gene058238	MS.gene76478	0.871471	6.67E-67	-1.69E-46
MS.gene058638	MS.gene76478	0.81297	3.24E-51	-1.69E-46
MS.gene058639	MS.gene76478	0.821708	3.50E-53	-1.69E-46
MS.gene058646	MS.gene76478	0.816902	4.35E-52	-1.69E-46
MS.gene058654	MS.gene76478	0.831501	1.61E-55	-1.69E-46
MS.gene058758	MS.gene76478	0.833545	5.01E-56	-1.69E-46
MS.gene05880	MS.gene76478	0.800297	1.54E-48	-1.69E-46
MS.gene058906	MS.gene76478	0.874859	4.86E-68	-1.69E-46
MS.gene059171	MS.gene76478	0.825938	3.57E-54	-1.69E-46
MS.gene059360	MS.gene76478	0.810857	9.36E-51	-1.69E-46
MS.gene05978	MS.gene76478	0.812544	4.02E-51	-1.69E-46
MS.gene059898	MS.gene76478	0.835002	2.16E-56	-1.69E-46
MS.gene06001	MS.gene76478	0.858061	1.07E-62	-1.69E-46
MS.gene060084	MS.gene76478	0.828228	1.01E-54	-1.69E-46
MS.gene06010	MS.gene76478	0.82384	1.12E-53	-1.69E-46
MS.gene06011	MS.gene76478	0.817514	3.17E-52	-1.69E-46
MS.gene060296	MS.gene76478	0.805574	1.25E-49	-1.69E-46
MS.gene060297	MS.gene76478	0.826764	2.27E-54	-1.69E-46
MS.gene060463	MS.gene76478	0.851479	8.64E-61	-1.69E-46
MS.gene060465	MS.gene76478	0.861367	1.08E-63	-1.69E-46
MS.gene060563	MS.gene76478	0.823539	1.31E-53	-1.69E-46
MS.gene060702	MS.gene76478	0.838057	3.61E-57	-1.69E-46
MS.gene060869	MS.gene76478	0.824363	8.41E-54	-1.69E-46
MS.gene060870	MS.gene76478	0.81312	3.01E-51	-1.69E-46
MS.gene061006	MS.gene76478	0.806441	8.21E-50	-1.69E-46
MS.gene061055	MS.gene76478	0.808958	2.40E-50	-1.69E-46
MS.gene061145	MS.gene76478	0.831022	2.11E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76478.t1	MTR_8g076070	98.780	82	1	0	1	82	1	82	6.68e-55	166

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76478.t1	AT2G18040	74.324	74	19	0	9	82	6	79	3.90e-36	119

Find 20 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAAGAGGATATCCTTTC+TGG	0.182475	8.1:-31371627	MS.gene76478:CDS
CGAAGCAAGATCCTCAAATT+TGG	0.289474	8.1:+31371599	None:intergenic
CTCGCGGCGGCGCTGAGGTT+AGG	0.301148	8.1:-31371767	MS.gene76478:CDS
TTCTTGATGACGTAACCTTC+TGG	0.327996	8.1:+31371687	None:intergenic
GCTAAACGCGGTGGCGATCT+TGG	0.368998	8.1:-31371555	MS.gene76478:CDS
TCGCGGCGGCGCTGAGGTTA+GGG	0.411373	8.1:-31371766	MS.gene76478:CDS
TTCTGGTAAGGCCAAATTTG+AGG	0.428366	8.1:-31371610	MS.gene76478:CDS
CAAATTTGGCCTTACCAGAA+AGG	0.448271	8.1:+31371613	None:intergenic
TATTCTTACTTCAATGAAAG+AGG	0.454286	8.1:-31371640	MS.gene76478:CDS
AGAGGATATCCTTTCTGGTA+AGG	0.533949	8.1:-31371622	MS.gene76478:CDS
AATTTGAGGATCTTGCTTCG+AGG	0.550226	8.1:-31371596	MS.gene76478:CDS
GTTCTAGAAGAAAAGCTTCG+TGG	0.556909	8.1:-31371716	MS.gene76478:CDS
TTCATCTCGCGGCGGCGCTG+AGG	0.579649	8.1:-31371772	MS.gene76478:CDS
CATTGAAGTAAGAATAGCAA+CGG	0.597353	8.1:+31371647	None:intergenic
GCGAAAATGTCTTCATCTCG+CGG	0.645162	8.1:-31371783	None:intergenic
CACATACTGATTAAACACGA+AGG	0.672969	8.1:-31371738	MS.gene76478:CDS
TGTAGCTCTGCTAAACGCGG+TGG	0.678782	8.1:-31371564	MS.gene76478:CDS
GATTGTAGCTCTGCTAAACG+CGG	0.692633	8.1:-31371567	MS.gene76478:CDS
GCTTCGTGGAAAGATCCAGA+AGG	0.706542	8.1:-31371702	MS.gene76478:CDS
AAAATGTCTTCATCTCGCGG+CGG	0.772656	8.1:-31371780	MS.gene76478:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TATTCTTACTTCAATGAAAG+AGG	-	chr8.1:31371655-31371674	MS.gene76478:CDS	25.0%
	CATTGAAGTAAGAATAGCAA+CGG	+	chr8.1:31371651-31371670	None:intergenic	30.0%
	ATGAAAGAGGATATCCTTTC+TGG	-	chr8.1:31371668-31371687	MS.gene76478:CDS	35.0%
!	CACATACTGATTAAACACGA+AGG	-	chr8.1:31371557-31371576	MS.gene76478:CDS	35.0%
	AATTTGAGGATCTTGCTTCG+AGG	-	chr8.1:31371699-31371718	MS.gene76478:CDS	40.0%
	CGAAGCAAGATCCTCAAATT+TGG	+	chr8.1:31371699-31371718	None:intergenic	40.0%
	TTCTGGTAAGGCCAAATTTG+AGG	-	chr8.1:31371685-31371704	MS.gene76478:CDS	40.0%
!	AGAGGATATCCTTTCTGGTA+AGG	-	chr8.1:31371673-31371692	MS.gene76478:CDS	40.0%
!!	CAAATTTGGCCTTACCAGAA+AGG	+	chr8.1:31371685-31371704	None:intergenic	40.0%
!!	GTTCTAGAAGAAAAGCTTCG+TGG	-	chr8.1:31371579-31371598	MS.gene76478:CDS	40.0%
!!	TTCTTGATGACGTAACCTTC+TGG	+	chr8.1:31371611-31371630	None:intergenic	40.0%
!	GATTGTAGCTCTGCTAAACG+CGG	-	chr8.1:31371728-31371747	MS.gene76478:CDS	45.0%
	GCTTCGTGGAAAGATCCAGA+AGG	-	chr8.1:31371593-31371612	MS.gene76478:CDS	50.0%
!	TGTAGCTCTGCTAAACGCGG+TGG	-	chr8.1:31371731-31371750	MS.gene76478:CDS	55.0%
	GCTAAACGCGGTGGCGATCT+TGG	-	chr8.1:31371740-31371759	MS.gene76478:CDS	60.0%
	TTCATCTCGCGGCGGCGCTG+AGG	-	chr8.1:31371523-31371542	MS.gene76478:CDS	70.0%
!	TCGCGGCGGCGCTGAGGTTA+GGG	-	chr8.1:31371529-31371548	MS.gene76478:CDS	70.0%
!	CTCGCGGCGGCGCTGAGGTT+AGG	-	chr8.1:31371528-31371547	MS.gene76478:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	31371518	31371799	31371518	ID=MS.gene76478
chr8.1	mRNA	31371518	31371799	31371518	ID=MS.gene76478.t1;Parent=MS.gene76478
chr8.1	exon	31371518	31371799	31371518	ID=MS.gene76478.t1.exon1;Parent=MS.gene76478.t1
chr8.1	CDS	31371518	31371799	31371518	ID=cds.MS.gene76478.t1;Parent=MS.gene76478.t1

Gene Sequence	>MS.gene76478 ATGTCTTCATCTCGCGGCGGCGCTGAGGTTAGGGCTTCACACATACTGATTAAACACGAAGGTTCTAGAAGAAAAGCTTCGTGGAAAGATCCAGAAGGTTACGTCATCAAGAACACTACTCGTGAAAGTGCCGTTGCTATTCTTACTTCAATGAAAGAGGATATCCTTTCTGGTAAGGCCAAATTTGAGGATCTTGCTTCGAGGTATTCTGATTGTAGCTCTGCTAAACGCGGTGGCGATCTTGGTAAGCAAATTTCAGATTCTTCAAATTCGTTTGTGTGA
Protein sequence	>MS.gene76478.t1 MSSSRGGAEVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILSGKAKFEDLASRYSDCSSAKRGGDLGKQISDSSNSFV