Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072424.t1 | XP_024627299.1 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 2.00E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072424.t1 | Q32L78 | 49.2 | 132 | 49 | 1 | 36 | 167 | 35 | 148 | 7.0e-29 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072424.t1 | A2Q3F3 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 1.4e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072424 | 0.812657 | 3.80E-51 | -1.69E-46 |
| MS.gene049166 | MS.gene072424 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene072424 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene049674 | MS.gene072424 | 0.816778 | 4.64E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene072424 | 0.821019 | 5.04E-53 | -1.69E-46 |
| MS.gene04984 | MS.gene072424 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene072424 | 0.848576 | 5.61E-60 | -1.69E-46 |
| MS.gene050085 | MS.gene072424 | 0.822223 | 2.66E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene072424 | 0.823959 | 1.05E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene072424 | 0.82834 | 9.49E-55 | -1.69E-46 |
| MS.gene050288 | MS.gene072424 | 0.815748 | 7.89E-52 | -1.69E-46 |
| MS.gene050317 | MS.gene072424 | 0.845794 | 3.25E-59 | -1.69E-46 |
| MS.gene050320 | MS.gene072424 | 0.802421 | 5.66E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene072424 | 0.800031 | 1.74E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene072424 | 0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene072424 | 0.802896 | 4.51E-49 | -1.69E-46 |
| MS.gene050735 | MS.gene072424 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene072424 | 0.830336 | 3.11E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene072424 | 0.853166 | 2.86E-61 | -1.69E-46 |
| MS.gene050955 | MS.gene072424 | 0.800565 | 1.36E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene072424 | 0.826901 | 2.10E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene072424 | 0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene072424 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene072424 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene072424 | 0.822497 | 2.29E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene072424 | 0.817016 | 4.10E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene072424 | 0.859488 | 3.99E-63 | -1.69E-46 |
| MS.gene051381 | MS.gene072424 | 0.805288 | 1.44E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene072424 | 0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene072424 | 0.814949 | 1.19E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene072424 | 0.834032 | 3.79E-56 | -1.69E-46 |
| MS.gene051756 | MS.gene072424 | 0.841328 | 5.08E-58 | -1.69E-46 |
| MS.gene051757 | MS.gene072424 | 0.815747 | 7.89E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene072424 | 0.829791 | 4.22E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene072424 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene052072 | MS.gene072424 | 0.821548 | 3.81E-53 | -1.69E-46 |
| MS.gene052242 | MS.gene072424 | -0.82683 | 2.19E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene072424 | 0.809345 | 1.98E-50 | -1.69E-46 |
| MS.gene052370 | MS.gene072424 | 0.807604 | 4.66E-50 | -1.69E-46 |
| MS.gene052397 | MS.gene072424 | 0.806451 | 8.18E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene072424 | 0.804202 | 2.42E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene072424 | 0.801483 | 8.82E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene072424 | 0.815455 | 9.17E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene072424 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene072424 | 0.830201 | 3.36E-55 | -1.69E-46 |
| MS.gene05380 | MS.gene072424 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene072424 | 0.812174 | 4.84E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene072424 | 0.82544 | 4.68E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene072424 | 0.844994 | 5.35E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene072424 | 0.822372 | 2.45E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene072424 | 0.833544 | 5.02E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene072424 | 0.809449 | 1.88E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene072424 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene072424 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene055603 | MS.gene072424 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene056097 | MS.gene072424 | 0.819765 | 9.78E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene072424 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene072424 | 0.82586 | 3.72E-54 | -1.69E-46 |
| MS.gene056580 | MS.gene072424 | 0.813625 | 2.33E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene072424 | 0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene072424 | 0.80051 | 1.39E-48 | -1.69E-46 |
| MS.gene056760 | MS.gene072424 | 0.809291 | 2.03E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene072424 | 0.846392 | 2.23E-59 | -1.69E-46 |
| MS.gene057057 | MS.gene072424 | 0.834368 | 3.12E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene072424 | 0.834933 | 2.25E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene072424 | 0.806635 | 7.48E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene072424 | 0.842187 | 3.01E-58 | -1.69E-46 |
| MS.gene057360 | MS.gene072424 | 0.820064 | 8.35E-53 | -1.69E-46 |
| MS.gene057452 | MS.gene072424 | -0.815642 | 8.33E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene072424 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene072424 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene072424 | 0.824963 | 6.07E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene072424 | 0.843835 | 1.10E-58 | -1.69E-46 |
| MS.gene058638 | MS.gene072424 | 0.837038 | 6.58E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene072424 | 0.854773 | 9.85E-62 | -1.69E-46 |
| MS.gene058654 | MS.gene072424 | 0.809701 | 1.66E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene072424 | 0.826133 | 3.21E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene072424 | 0.819348 | 1.22E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene072424 | 0.835141 | 1.99E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene072424 | 0.872531 | 2.96E-67 | -1.69E-46 |
| MS.gene059227 | MS.gene072424 | 0.803276 | 3.77E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene072424 | 0.80587 | 1.08E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene072424 | 0.838839 | 2.27E-57 | -1.69E-46 |
| MS.gene06010 | MS.gene072424 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene072424 | 0.809772 | 1.60E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene072424 | 0.800652 | 1.30E-48 | -1.69E-46 |
| MS.gene060465 | MS.gene072424 | 0.806976 | 6.33E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene072424 | 0.809534 | 1.80E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene072424 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene072424 | 0.80356 | 3.29E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene072424 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene072424 | 0.808144 | 3.58E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene072424 | 0.800595 | 1.34E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072424.t1 | MTR_7g114210 | 97.143 | 175 | 5 | 0 | 1 | 175 | 1 | 175 | 5.13e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072424.t1 | AT3G05000 | 79.429 | 175 | 33 | 2 | 1 | 175 | 1 | 172 | 2.63e-101 | 289 |
Find 46 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCGGTTTGGTGATCATT+TGG | 0.323253 | 7.3:+2824171 | MS.gene072424:CDS |
| GATCGAAGCCATTGGTTATC+AGG | 0.347972 | 7.3:+2823781 | MS.gene072424:CDS |
| ATCCTGCGAGCAGCGAGTTC+AGG | 0.362814 | 7.3:-2823761 | None:intergenic |
| TTCCCATGCGGGATCATTAG+AGG | 0.368149 | 7.3:+2824582 | MS.gene072424:CDS |
| GATATACGATGGAGCGGCCT+CGG | 0.415640 | 7.3:+2824155 | MS.gene072424:intron |
| TAGAGGAGCTCTTTCCAACT+TGG | 0.425869 | 7.3:+2824599 | MS.gene072424:CDS |
| TGCACCTACGGCTGAAAGTA+AGG | 0.438829 | 7.3:+2824530 | MS.gene072424:CDS |
| CTAGAGTAGTTCATACTCAA+TGG | 0.454113 | 7.3:+2824874 | MS.gene072424:CDS |
| GGCAATTAAGTTCATTTGCA+AGG | 0.458740 | 7.3:+2824195 | MS.gene072424:CDS |
| AGCAGCGAGTTCAGGTTTGT+TGG | 0.468848 | 7.3:-2823753 | None:intergenic |
| GGCTGAAAGTAAGGCAGCAC+AGG | 0.488115 | 7.3:+2824539 | MS.gene072424:CDS |
| ACGATGGAGCGGCCTCGGTT+TGG | 0.496970 | 7.3:+2824160 | MS.gene072424:CDS |
| ATAAATTTCCGTGGCTTGCA+CGG | 0.497008 | 7.3:+2824457 | MS.gene072424:CDS |
| AGAGGAGCTCTTTCCAACTT+GGG | 0.498177 | 7.3:+2824600 | MS.gene072424:CDS |
| TGCATCTTTATTTCCCATGC+GGG | 0.509752 | 7.3:+2824571 | MS.gene072424:CDS |
| TAGAGTAGTTCATACTCAAT+GGG | 0.517531 | 7.3:+2824875 | MS.gene072424:CDS |
| TCCGTGGCTTGCACGGATGT+CGG | 0.520572 | 7.3:+2824464 | MS.gene072424:CDS |
| TCGGTTTGGTGATCATTTGG+AGG | 0.520959 | 7.3:+2824174 | MS.gene072424:CDS |
| ACAACTTGAAAACTAACCAT+AGG | 0.528003 | 7.3:+2824251 | MS.gene072424:CDS |
| AACCTGAACTCGCTGCTCGC+AGG | 0.543806 | 7.3:+2823759 | MS.gene072424:CDS |
| CAACTTGAAAACTAACCATA+GGG | 0.547452 | 7.3:+2824252 | MS.gene072424:CDS |
| TGATAATGTTAGTTCAGTTG+AGG | 0.553497 | 7.3:+2824500 | MS.gene072424:CDS |
| TGCACAGGGAATTCCCAAGT+TGG | 0.556321 | 7.3:-2824613 | None:intergenic |
| TGAGGATTATTCTGCACCTA+CGG | 0.558019 | 7.3:+2824518 | MS.gene072424:CDS |
| GCTGCCTTACTTTCAGCCGT+AGG | 0.558260 | 7.3:-2824534 | None:intergenic |
| ACCGACATCCGTGCAAGCCA+CGG | 0.566327 | 7.3:-2824465 | None:intergenic |
| TATGTCTGCAGAAACTGCAC+AGG | 0.568585 | 7.3:-2824628 | None:intergenic |
| TTCAGAGAGTGAAAATGGTG+AGG | 0.569906 | 7.3:+2823660 | None:intergenic |
| GAACTAACATTATCAGTGGA+TGG | 0.571137 | 7.3:-2824492 | None:intergenic |
| TTGCGTTGATAGCTTGATGA+CGG | 0.587460 | 7.3:+2823697 | MS.gene072424:CDS |
| GCTCCTCTAATGATCCCGCA+TGG | 0.591236 | 7.3:-2824585 | None:intergenic |
| CTCCTCTAATGATCCCGCAT+GGG | 0.596153 | 7.3:-2824584 | None:intergenic |
| TGCAAGATAATAAATTTCCG+TGG | 0.603647 | 7.3:+2824448 | MS.gene072424:CDS |
| TCAGAGAGTGAAAATGGTGA+GGG | 0.605160 | 7.3:+2823661 | None:intergenic |
| TCGGTCAACAGCTCTCTGAA+AGG | 0.608978 | 7.3:+2823804 | MS.gene072424:CDS |
| GCTCGCAGGATCGAAGCCAT+TGG | 0.613190 | 7.3:+2823773 | MS.gene072424:CDS |
| GGGGATACACACATGCTGGA+AGG | 0.619761 | 7.3:-2824656 | None:intergenic |
| GAAGCCATTGGTTATCAGGT+CGG | 0.622295 | 7.3:+2823785 | MS.gene072424:CDS |
| AACTGAACTAACATTATCAG+TGG | 0.624516 | 7.3:-2824496 | None:intergenic |
| TTGACCGACCTGATAACCAA+TGG | 0.626958 | 7.3:-2823789 | None:intergenic |
| TGTGTAATTCAGATATACGA+TGG | 0.627817 | 7.3:+2824144 | MS.gene072424:intron |
| TGATAGCTTGATGACGGAGA+TGG | 0.641800 | 7.3:+2823703 | MS.gene072424:CDS |
| ATGCATCTTTATTTCCCATG+CGG | 0.650443 | 7.3:+2824570 | MS.gene072424:CDS |
| AATTCAGATATACGATGGAG+CGG | 0.678919 | 7.3:+2824149 | MS.gene072424:intron |
| TCCAAATGATCACCAAACCG+AGG | 0.695841 | 7.3:-2824172 | None:intergenic |
| ATGTCTGCAGAAACTGCACA+GGG | 0.724210 | 7.3:-2824627 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr7.3:2824295-2824314 | MS.gene072424:intron | 0.0% |
| !!! | TTCTTGATATTAATTATTTT+TGG | + | chr7.3:2823902-2823921 | MS.gene072424:intron | 10.0% |
| !!! | TGATATTAATTATTTTTGGT+AGG | + | chr7.3:2823906-2823925 | MS.gene072424:intron | 15.0% |
| !! | TCATGAAATTGTAATCAAAT+TGG | + | chr7.3:2823951-2823970 | MS.gene072424:intron | 20.0% |
| !!! | TTTTCATTTTTAGTGTTTTC+TGG | + | chr7.3:2824783-2824802 | MS.gene072424:intron | 20.0% |
| ! | TGTGAATAATTTGATCTGTT+TGG | + | chr7.3:2824834-2824853 | MS.gene072424:intron | 25.0% |
| ! | TGTTTGGAAATGTTTAAACA+GGG | + | chr7.3:2824850-2824869 | MS.gene072424:intron | 25.0% |
| !! | ATTTTCTCGAATTACTACAT+AGG | - | chr7.3:2824019-2824038 | None:intergenic | 25.0% |
| !! | CATAGAAGAGAAGATTTTTA+AGG | + | chr7.3:2824745-2824764 | MS.gene072424:intron | 25.0% |
| !!! | TTTTTGTGTTTTGATTTCCA+TGG | + | chr7.3:2824388-2824407 | MS.gene072424:intron | 25.0% |
| AACTGAACTAACATTATCAG+TGG | - | chr7.3:2824499-2824518 | None:intergenic | 30.0% | |
| ACAACTTGAAAACTAACCAT+AGG | + | chr7.3:2824251-2824270 | MS.gene072424:CDS | 30.0% | |
| AGATGAAGAAAGAGAGAATT+AGG | - | chr7.3:2823845-2823864 | None:intergenic | 30.0% | |
| CAACTTGAAAACTAACCATA+GGG | + | chr7.3:2824252-2824271 | MS.gene072424:CDS | 30.0% | |
| CTGTTTGGAAATGTTTAAAC+AGG | + | chr7.3:2824849-2824868 | MS.gene072424:intron | 30.0% | |
| GATGAAGAAAGAGAGAATTA+GGG | - | chr7.3:2823844-2823863 | None:intergenic | 30.0% | |
| TAGAGTAGTTCATACTCAAT+GGG | + | chr7.3:2824875-2824894 | MS.gene072424:CDS | 30.0% | |
| TGCAAGATAATAAATTTCCG+TGG | + | chr7.3:2824448-2824467 | MS.gene072424:CDS | 30.0% | |
| TGTGTAATTCAGATATACGA+TGG | + | chr7.3:2824144-2824163 | MS.gene072424:intron | 30.0% | |
| ! | AGTTCATTTGCAAGGATTTT+TGG | + | chr7.3:2824203-2824222 | MS.gene072424:CDS | 30.0% |
| ! | ATTTCCATGGTTGTGTTATT+TGG | + | chr7.3:2824401-2824420 | MS.gene072424:intron | 30.0% |
| ! | TGATAATGTTAGTTCAGTTG+AGG | + | chr7.3:2824500-2824519 | MS.gene072424:CDS | 30.0% |
| AATTCAGATATACGATGGAG+CGG | + | chr7.3:2824149-2824168 | MS.gene072424:intron | 35.0% | |
| AGAACCAAATAACACAACCA+TGG | - | chr7.3:2824408-2824427 | None:intergenic | 35.0% | |
| CTAGAGTAGTTCATACTCAA+TGG | + | chr7.3:2824874-2824893 | MS.gene072424:CDS | 35.0% | |
| CTGTTATCACACAACATAGT+AGG | + | chr7.3:2823869-2823888 | MS.gene072424:intron | 35.0% | |
| GAACTAACATTATCAGTGGA+TGG | - | chr7.3:2824495-2824514 | None:intergenic | 35.0% | |
| GGCAATTAAGTTCATTTGCA+AGG | + | chr7.3:2824195-2824214 | MS.gene072424:CDS | 35.0% | |
| ! | ATGCATCTTTATTTCCCATG+CGG | + | chr7.3:2824570-2824589 | MS.gene072424:CDS | 35.0% |
| AACCAATTCAACTCACCCTA+TGG | - | chr7.3:2824270-2824289 | None:intergenic | 40.0% | |
| GAATGTAGTCACATGTGTCA+GGG | + | chr7.3:2824048-2824067 | MS.gene072424:intron | 40.0% | |
| TGAATGTAGTCACATGTGTC+AGG | + | chr7.3:2824047-2824066 | MS.gene072424:intron | 40.0% | |
| TGAGGATTATTCTGCACCTA+CGG | + | chr7.3:2824518-2824537 | MS.gene072424:CDS | 40.0% | |
| ! | AACCATAGGGTGAGTTGAAT+TGG | + | chr7.3:2824265-2824284 | MS.gene072424:intron | 40.0% |
| ! | ATAAATTTCCGTGGCTTGCA+CGG | + | chr7.3:2824457-2824476 | MS.gene072424:CDS | 40.0% |
| ! | GTCAGATAGGTTATGATGGA+TGG | + | chr7.3:2824070-2824089 | MS.gene072424:intron | 40.0% |
| ! | TGCATCTTTATTTCCCATGC+GGG | + | chr7.3:2824571-2824590 | MS.gene072424:CDS | 40.0% |
| !! | TGTTATTTGGTTCTGCTGCA+GGG | + | chr7.3:2824414-2824433 | MS.gene072424:intron | 40.0% |
| !! | TTGCGTTGATAGCTTGATGA+CGG | + | chr7.3:2823697-2823716 | MS.gene072424:CDS | 40.0% |
| !!! | TTGCAAGGATTTTTGGTCTG+AGG | + | chr7.3:2824210-2824229 | MS.gene072424:CDS | 40.0% |
| ACTACATAGGTCGTGCTTCA+TGG | - | chr7.3:2824006-2824025 | None:intergenic | 45.0% | |
| AGAGGAGCTCTTTCCAACTT+GGG | + | chr7.3:2824600-2824619 | MS.gene072424:CDS | 45.0% | |
| ATGTCTGCAGAAACTGCACA+GGG | - | chr7.3:2824630-2824649 | None:intergenic | 45.0% | |
| CAGGGTCAGATAGGTTATGA+TGG | + | chr7.3:2824066-2824085 | MS.gene072424:intron | 45.0% | |
| TAGAGGAGCTCTTTCCAACT+TGG | + | chr7.3:2824599-2824618 | MS.gene072424:CDS | 45.0% | |
| TATGTCTGCAGAAACTGCAC+AGG | - | chr7.3:2824631-2824650 | None:intergenic | 45.0% | |
| TCCAAATGATCACCAAACCG+AGG | - | chr7.3:2824175-2824194 | None:intergenic | 45.0% | |
| TTGACCGACCTGATAACCAA+TGG | - | chr7.3:2823792-2823811 | None:intergenic | 45.0% | |
| ! | GAAGCCATTGGTTATCAGGT+CGG | + | chr7.3:2823785-2823804 | MS.gene072424:CDS | 45.0% |
| ! | GATCGAAGCCATTGGTTATC+AGG | + | chr7.3:2823781-2823800 | MS.gene072424:CDS | 45.0% |
| ! | TCAACAGCTCTCTGAAAGGT+TGG | + | chr7.3:2823808-2823827 | MS.gene072424:intron | 45.0% |
| !! | GTGTTATTTGGTTCTGCTGC+AGG | + | chr7.3:2824413-2824432 | MS.gene072424:intron | 45.0% |
| !! | TCGGTTTGGTGATCATTTGG+AGG | + | chr7.3:2824174-2824193 | MS.gene072424:CDS | 45.0% |
| !! | TGATAGCTTGATGACGGAGA+TGG | + | chr7.3:2823703-2823722 | MS.gene072424:CDS | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr7.3:2824687-2824706 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGGGAGAT+GGG | - | chr7.3:2824681-2824700 | None:intergenic | 50.0% | |
| CACATGTGTCAGGGTCAGAT+AGG | + | chr7.3:2824057-2824076 | MS.gene072424:intron | 50.0% | |
| CTCCTCTAATGATCCCGCAT+GGG | - | chr7.3:2824587-2824606 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr7.3:2824688-2824707 | None:intergenic | 50.0% | |
| TCGGTCAACAGCTCTCTGAA+AGG | + | chr7.3:2823804-2823823 | MS.gene072424:CDS | 50.0% | |
| TGCACAGGGAATTCCCAAGT+TGG | - | chr7.3:2824616-2824635 | None:intergenic | 50.0% | |
| TGCACCTACGGCTGAAAGTA+AGG | + | chr7.3:2824530-2824549 | MS.gene072424:CDS | 50.0% | |
| TTCCCATGCGGGATCATTAG+AGG | + | chr7.3:2824582-2824601 | MS.gene072424:CDS | 50.0% | |
| ! | AGCAGCGAGTTCAGGTTTGT+TGG | - | chr7.3:2823756-2823775 | None:intergenic | 50.0% |
| !! | GCCTCGGTTTGGTGATCATT+TGG | + | chr7.3:2824171-2824190 | MS.gene072424:CDS | 50.0% |
| AGAGAGAGAGAGGGAGATGG+GGG | - | chr7.3:2824679-2824698 | None:intergenic | 55.0% | |
| ATGGGGGGATACACACATGC+TGG | - | chr7.3:2824663-2824682 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGGGAGA+TGG | - | chr7.3:2824682-2824701 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGGGAGATG+GGG | - | chr7.3:2824680-2824699 | None:intergenic | 55.0% | |
| GATATACGATGGAGCGGCCT+CGG | + | chr7.3:2824155-2824174 | MS.gene072424:intron | 55.0% | |
| GCTCCTCTAATGATCCCGCA+TGG | - | chr7.3:2824588-2824607 | None:intergenic | 55.0% | |
| GCTGCCTTACTTTCAGCCGT+AGG | - | chr7.3:2824537-2824556 | None:intergenic | 55.0% | |
| GGCTGAAAGTAAGGCAGCAC+AGG | + | chr7.3:2824539-2824558 | MS.gene072424:CDS | 55.0% | |
| GGGGATACACACATGCTGGA+AGG | - | chr7.3:2824659-2824678 | None:intergenic | 55.0% | |
| AACCTGAACTCGCTGCTCGC+AGG | + | chr7.3:2823759-2823778 | MS.gene072424:CDS | 60.0% | |
| ACCGACATCCGTGCAAGCCA+CGG | - | chr7.3:2824468-2824487 | None:intergenic | 60.0% | |
| ATCCTGCGAGCAGCGAGTTC+AGG | - | chr7.3:2823764-2823783 | None:intergenic | 60.0% | |
| GAGAGAGAGAGGGAGATGGG+GGG | - | chr7.3:2824678-2824697 | None:intergenic | 60.0% | |
| GCTCGCAGGATCGAAGCCAT+TGG | + | chr7.3:2823773-2823792 | MS.gene072424:CDS | 60.0% | |
| ! | TCCGTGGCTTGCACGGATGT+CGG | + | chr7.3:2824464-2824483 | MS.gene072424:CDS | 60.0% |
| ACGATGGAGCGGCCTCGGTT+TGG | + | chr7.3:2824160-2824179 | MS.gene072424:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2823674 | 2824923 | 2823674 | ID=MS.gene072424 |
| chr7.3 | mRNA | 2823674 | 2824923 | 2823674 | ID=MS.gene072424.t1;Parent=MS.gene072424 |
| chr7.3 | exon | 2823674 | 2823825 | 2823674 | ID=MS.gene072424.t1.exon1;Parent=MS.gene072424.t1 |
| chr7.3 | CDS | 2823674 | 2823825 | 2823674 | ID=cds.MS.gene072424.t1;Parent=MS.gene072424.t1 |
| chr7.3 | exon | 2824156 | 2824273 | 2824156 | ID=MS.gene072424.t1.exon2;Parent=MS.gene072424.t1 |
| chr7.3 | CDS | 2824156 | 2824273 | 2824156 | ID=cds.MS.gene072424.t1;Parent=MS.gene072424.t1 |
| chr7.3 | exon | 2824435 | 2824666 | 2824435 | ID=MS.gene072424.t1.exon3;Parent=MS.gene072424.t1 |
| chr7.3 | CDS | 2824435 | 2824666 | 2824435 | ID=cds.MS.gene072424.t1;Parent=MS.gene072424.t1 |
| chr7.3 | exon | 2824871 | 2824923 | 2824871 | ID=MS.gene072424.t1.exon4;Parent=MS.gene072424.t1 |
| chr7.3 | CDS | 2824871 | 2824923 | 2824871 | ID=cds.MS.gene072424.t1;Parent=MS.gene072424.t1 |
| Gene Sequence |
| Protein sequence |
