Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71547.t1 | XP_013448069.1 | 91.3 | 229 | 19 | 1 | 1 | 229 | 1 | 228 | 2.20E-74 | 288.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71547.t1 | A0A072TY20 | 91.3 | 229 | 19 | 1 | 1 | 229 | 1 | 228 | 1.6e-74 | 288.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene71547 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene049166 | MS.gene71547 | 0.83803 | 3.66E-57 | -1.69E-46 |
| MS.gene049756 | MS.gene71547 | 0.801608 | 8.31E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene71547 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene71547 | 0.859107 | 5.20E-63 | -1.69E-46 |
| MS.gene050277 | MS.gene71547 | 0.826306 | 2.92E-54 | -1.69E-46 |
| MS.gene050317 | MS.gene71547 | 0.854403 | 1.26E-61 | -1.69E-46 |
| MS.gene050320 | MS.gene71547 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene71547 | 0.826286 | 2.95E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene71547 | 0.820864 | 5.48E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene71547 | 0.809277 | 2.05E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene71547 | 0.85817 | 9.90E-63 | -1.69E-46 |
| MS.gene051746 | MS.gene71547 | 0.822667 | 2.10E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene71547 | 0.841939 | 3.50E-58 | -1.69E-46 |
| MS.gene051756 | MS.gene71547 | 0.831068 | 2.06E-55 | -1.69E-46 |
| MS.gene051757 | MS.gene71547 | 0.833044 | 6.69E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene71547 | 0.822385 | 2.44E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene71547 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene71547 | 0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene71547 | 0.851849 | 6.79E-61 | -1.69E-46 |
| MS.gene052856 | MS.gene71547 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene71547 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene71547 | 0.813778 | 2.15E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene71547 | 0.842363 | 2.71E-58 | -1.69E-46 |
| MS.gene053381 | MS.gene71547 | 0.851463 | 8.73E-61 | -1.69E-46 |
| MS.gene05380 | MS.gene71547 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene71547 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene054823 | MS.gene71547 | 0.811131 | 8.16E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene71547 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene71547 | 0.811267 | 7.63E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene71547 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene055441 | MS.gene71547 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene71547 | 0.847278 | 1.28E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene71547 | 0.811359 | 7.28E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene71547 | 0.817583 | 3.06E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene71547 | 0.805113 | 1.56E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene71547 | 0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene71547 | 0.815628 | 8.39E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene71547 | 0.819738 | 9.92E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene71547 | 0.848948 | 4.43E-60 | -1.69E-46 |
| MS.gene056986 | MS.gene71547 | 0.834809 | 2.42E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene71547 | 0.814584 | 1.43E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene71547 | 0.857832 | 1.25E-62 | -1.69E-46 |
| MS.gene057140 | MS.gene71547 | 0.844784 | 6.10E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene71547 | 0.849128 | 3.95E-60 | -1.69E-46 |
| MS.gene057452 | MS.gene71547 | -0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene71547 | 0.819981 | 8.73E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene71547 | 0.825305 | 5.04E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene71547 | 0.814532 | 1.47E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene71547 | 0.807558 | 4.77E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene71547 | 0.816144 | 6.43E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene71547 | 0.86861 | 5.75E-66 | -1.69E-46 |
| MS.gene058646 | MS.gene71547 | 0.838153 | 3.41E-57 | -1.69E-46 |
| MS.gene058654 | MS.gene71547 | 0.863758 | 1.98E-64 | -1.69E-46 |
| MS.gene058906 | MS.gene71547 | 0.841745 | 3.94E-58 | -1.69E-46 |
| MS.gene059050 | MS.gene71547 | 0.836893 | 7.17E-57 | -1.69E-46 |
| MS.gene059171 | MS.gene71547 | 0.802981 | 4.34E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene71547 | 0.804616 | 1.98E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene71547 | 0.832574 | 8.74E-56 | -1.69E-46 |
| MS.gene059830 | MS.gene71547 | 0.814399 | 1.57E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene71547 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene71547 | 0.824421 | 8.15E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene71547 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene71547 | 0.844674 | 6.53E-59 | -1.69E-46 |
| MS.gene06011 | MS.gene71547 | 0.857359 | 1.72E-62 | -1.69E-46 |
| MS.gene060296 | MS.gene71547 | 0.817736 | 2.83E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene71547 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene71547 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene71547 | 0.841202 | 5.48E-58 | -1.69E-46 |
| MS.gene060763 | MS.gene71547 | 0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene71547 | 0.842624 | 2.31E-58 | -1.69E-46 |
| MS.gene060870 | MS.gene71547 | 0.826159 | 3.16E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71547.t1 | MTR_7g033120 | 96.943 | 229 | 6 | 1 | 1 | 229 | 1 | 228 | 1.15e-162 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71547.t1 | AT5G14440 | 55.046 | 218 | 85 | 4 | 22 | 232 | 14 | 225 | 2.94e-61 | 194 |
| MS.gene71547.t1 | AT5G14440 | 55.046 | 218 | 85 | 4 | 22 | 232 | 14 | 225 | 3.41e-61 | 194 |
| MS.gene71547.t1 | AT5G40570 | 48.588 | 177 | 55 | 2 | 18 | 194 | 5 | 145 | 9.54e-50 | 162 |
| MS.gene71547.t1 | AT5G40570 | 46.739 | 184 | 55 | 3 | 18 | 194 | 5 | 152 | 8.19e-47 | 154 |
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCGATGGTGTTCAGATTC+AGG | 0.265251 | 7.3:-66626452 | MS.gene71547:CDS |
| TGAATTTCGGTGAACCTAAT+AGG | 0.277383 | 7.3:+66628434 | None:intergenic |
| AAAAGATTCCTCAATAAATT+AGG | 0.292988 | 7.3:-66628067 | MS.gene71547:intron |
| ATAAGTCTGAGGAACATATT+TGG | 0.301067 | 7.3:-66628105 | MS.gene71547:CDS |
| AGACAGAAGAGGAAGACTTC+TGG | 0.333633 | 7.3:-66626517 | MS.gene71547:CDS |
| GCTGAAGAAGGGGATGTAAT+TGG | 0.333920 | 7.3:-66626404 | MS.gene71547:CDS |
| ACATCCCCTTCTTCAGCTTC+CGG | 0.343430 | 7.3:+66626410 | None:intergenic |
| GGAGTAAAAGGGTATGTCTT+TGG | 0.354297 | 7.3:+66628357 | None:intergenic |
| TTTCCGATTTCCTTGAATTT+CGG | 0.355198 | 7.3:+66628421 | None:intergenic |
| GGCGGAGACGACGGCGGCGG+TGG | 0.359224 | 7.3:-66628503 | MS.gene71547:CDS |
| AAAGAAGGAAGCAACCTATT+AGG | 0.361574 | 7.3:-66628448 | MS.gene71547:CDS |
| AAGAAATTATTTCTGAAGTT+AGG | 0.373898 | 7.3:-66626562 | MS.gene71547:CDS |
| CAGGAAGAAGGAATGGAAAA+TGG | 0.387557 | 7.3:-66626704 | MS.gene71547:CDS |
| TTAATCAAGATCCTCTTTGC+CGG | 0.403502 | 7.3:-66628264 | MS.gene71547:intron |
| GGAGACGACGGCGGCGGTGG+AGG | 0.405952 | 7.3:-66628500 | MS.gene71547:CDS |
| GACGACGGCGGCGGTGGAGG+TGG | 0.413029 | 7.3:-66628497 | MS.gene71547:CDS |
| GCCTCCTGCTGGAGAACGCT+GGG | 0.429277 | 7.3:-66626492 | MS.gene71547:CDS |
| GACTTCTGGATGCCTCCTGC+TGG | 0.436042 | 7.3:-66626503 | MS.gene71547:CDS |
| TGCCTCCTGCTGGAGAACGC+TGG | 0.437280 | 7.3:-66626493 | MS.gene71547:CDS |
| TCACCGAAATTCAAGGAAAT+CGG | 0.437920 | 7.3:-66628424 | MS.gene71547:CDS |
| GGGTCTCATCGATTTCGCTT+TGG | 0.447863 | 7.3:-66628314 | MS.gene71547:CDS |
| GGTTTCATAAACAGAGCAAC+AGG | 0.449069 | 7.3:-66626723 | MS.gene71547:intron |
| AGTTTAGAGAAAATGTGTTA+TGG | 0.450151 | 7.3:+66626370 | None:intergenic |
| TCTTGATTAAACATATTAAG+AGG | 0.450456 | 7.3:+66628277 | None:intergenic |
| TTCCGGTTCTGACTCTGAAT+CGG | 0.470015 | 7.3:+66626427 | None:intergenic |
| ATGTAAGTTGACTGGTCATA+AGG | 0.472920 | 7.3:-66628131 | MS.gene71547:CDS |
| CGATTCAAATGCGTAGAGAC+AGG | 0.475721 | 7.3:-66628394 | MS.gene71547:CDS |
| ATTAGGTTCACCGAAATTCA+AGG | 0.477171 | 7.3:-66628431 | MS.gene71547:CDS |
| AAATCTGACCTAATTTATTG+AGG | 0.477339 | 7.3:+66628059 | None:intergenic |
| GAGAATGTTAAGCAGAAAGA+AGG | 0.478599 | 7.3:-66628463 | MS.gene71547:CDS |
| TTGTCCCAGCGTTCTCCAGC+AGG | 0.495445 | 7.3:+66626488 | None:intergenic |
| TCAGAACCGGAAGCTGAAGA+AGG | 0.499166 | 7.3:-66626416 | MS.gene71547:CDS |
| CATATTTGGAAGCATATGAC+TGG | 0.499988 | 7.3:-66628091 | MS.gene71547:CDS |
| ATCGATGGTGTTCAGATTCA+GGG | 0.500753 | 7.3:-66626451 | MS.gene71547:CDS |
| GTCCGATTCAGAGTCAGAAC+CGG | 0.505178 | 7.3:-66626429 | MS.gene71547:CDS |
| CAGAACCGGAAGCTGAAGAA+GGG | 0.536386 | 7.3:-66626415 | MS.gene71547:CDS |
| AGAGCAACAGGAAGAAGGAA+TGG | 0.538674 | 7.3:-66626711 | MS.gene71547:CDS |
| TAAACAGAGCAACAGGAAGA+AGG | 0.539912 | 7.3:-66626716 | MS.gene71547:intron |
| GGCGGTGGAGGTGGCGACGA+CGG | 0.542074 | 7.3:-66628488 | MS.gene71547:CDS |
| TATGGCGGAGACGACGGCGG+CGG | 0.552853 | 7.3:-66628506 | MS.gene71547:CDS |
| AAGTTGATATGTAAGTTGAC+TGG | 0.567064 | 7.3:-66628139 | MS.gene71547:CDS |
| CTCCGTTATGGCGGAGACGA+CGG | 0.569517 | 7.3:-66628512 | None:intergenic |
| AAATTCAAGGAAATCGGAAA+CGG | 0.578058 | 7.3:-66628418 | MS.gene71547:CDS |
| CGAAGAAATTACCGGCAAAG+AGG | 0.578448 | 7.3:+66628253 | None:intergenic |
| AGTTAGGAAGTCTTCTAATG+AGG | 0.585084 | 7.3:-66626546 | MS.gene71547:CDS |
| TCCCAGCGTTCTCCAGCAGG+AGG | 0.591225 | 7.3:+66626491 | None:intergenic |
| GGTGGAGGTGGCGACGACGG+AGG | 0.596342 | 7.3:-66628485 | MS.gene71547:CDS |
| TGAGGAAAGTGAGACAGAAG+AGG | 0.603864 | 7.3:-66626528 | MS.gene71547:CDS |
| GAACGCTGGGACAACGATGA+CGG | 0.608337 | 7.3:-66626479 | MS.gene71547:CDS |
| CGTTATGGCGGAGACGACGG+CGG | 0.659283 | 7.3:-66628509 | None:intergenic |
| TCATAAGGTTAATAAGTCTG+AGG | 0.661956 | 7.3:-66628116 | MS.gene71547:CDS |
| AGAACCGGAAGCTGAAGAAG+GGG | 0.662051 | 7.3:-66626414 | MS.gene71547:CDS |
| ACGATGACGGAGGAGATCGA+TGG | 0.664085 | 7.3:-66626466 | MS.gene71547:CDS |
| ATATTTGGAAGCATATGACT+GGG | 0.673946 | 7.3:-66628090 | MS.gene71547:CDS |
| CGCTGGGACAACGATGACGG+AGG | 0.680098 | 7.3:-66626476 | MS.gene71547:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTGATTCAATTTT+TGG | - | chr7.3:66626848-66626867 | MS.gene71547:intron | 10.0% |
| !! | ATCTTCTTTCATAAAAATAT+AGG | + | chr7.3:66627216-66627235 | None:intergenic | 15.0% |
| !!! | GTTATTTCAAACAAAAAATT+GGG | + | chr7.3:66627837-66627856 | None:intergenic | 15.0% |
| !!! | TATTTTTATGAAAGAAGATA+AGG | - | chr7.3:66627217-66627236 | MS.gene71547:intron | 15.0% |
| !!! | TGACATTTTTATAAGTTTTT+TGG | - | chr7.3:66627021-66627040 | MS.gene71547:intron | 15.0% |
| !!! | TTTTTTAATCTAGTTTCATT+TGG | - | chr7.3:66627407-66627426 | MS.gene71547:intron | 15.0% |
| !! | AAAAGATTCCTCAATAAATT+AGG | - | chr7.3:66626811-66626830 | MS.gene71547:intron | 20.0% |
| !! | TATACACAAGCTATATTTAT+AGG | + | chr7.3:66627132-66627151 | None:intergenic | 20.0% |
| !! | TCTTGATTAAACATATTAAG+AGG | + | chr7.3:66626604-66626623 | None:intergenic | 20.0% |
| !!! | AAGAAATTATTTCTGAAGTT+AGG | - | chr7.3:66628316-66628335 | MS.gene71547:CDS | 20.0% |
| !!! | AATTTGTCATTTTGTGAATT+TGG | - | chr7.3:66627756-66627775 | MS.gene71547:intron | 20.0% |
| !!! | ATTTTTTGTTTGAAATAACG+TGG | - | chr7.3:66627838-66627857 | MS.gene71547:intron | 20.0% |
| !!! | CGTTATTTCAAACAAAAAAT+TGG | + | chr7.3:66627838-66627857 | None:intergenic | 20.0% |
| !!! | TGTTTTAGTATTTAAGTTGT+AGG | - | chr7.3:66626881-66626900 | MS.gene71547:intron | 20.0% |
| !!! | TTTTTTGTTTGAAATAACGT+GGG | - | chr7.3:66627839-66627858 | MS.gene71547:intron | 20.0% |
| ! | AAATCTGACCTAATTTATTG+AGG | + | chr7.3:66626822-66626841 | None:intergenic | 25.0% |
| ! | CAAATAAGCTAAATCCAAAT+AGG | - | chr7.3:66627364-66627383 | MS.gene71547:intron | 25.0% |
| ! | CATATTGAAATATGAGTATC+CGG | - | chr7.3:66628016-66628035 | MS.gene71547:intron | 25.0% |
| ! | CTTATGTATTAACTACTGTT+TGG | - | chr7.3:66626927-66626946 | MS.gene71547:intron | 25.0% |
| ! | TCAAATATAGAAGACCTATT+TGG | + | chr7.3:66627381-66627400 | None:intergenic | 25.0% |
| !! | AACAGTAAAAAATGTCGTTT+GGG | - | chr7.3:66626544-66626563 | MS.gene71547:CDS | 25.0% |
| !! | AATTGGGTCAATCATAATTT+TGG | + | chr7.3:66627821-66627840 | None:intergenic | 25.0% |
| !! | ATGAATGAATGTGTATTTTG+TGG | - | chr7.3:66628109-66628128 | MS.gene71547:CDS | 25.0% |
| !! | TGATTTTGTCAAATTACTAG+CGG | + | chr7.3:66627623-66627642 | None:intergenic | 25.0% |
| !! | TTCATTAGCTTATGCATTAA+AGG | - | chr7.3:66628134-66628153 | MS.gene71547:CDS | 25.0% |
| !! | TTTGAGACGAAAACATAAAA+GGG | + | chr7.3:66626660-66626679 | None:intergenic | 25.0% |
| !! | TTTTTACTGTTGGAGTAAAA+GGG | + | chr7.3:66626535-66626554 | None:intergenic | 25.0% |
| !!! | AAATTTGTTAAACACTTCCA+TGG | + | chr7.3:66627446-66627465 | None:intergenic | 25.0% |
| !!! | TTTTGAGACGAAAACATAAA+AGG | + | chr7.3:66626661-66626680 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGTTGGAGTAAA+AGG | + | chr7.3:66626536-66626555 | None:intergenic | 25.0% |
| AAAAGGAACGAAGAAATTAC+CGG | + | chr7.3:66626636-66626655 | None:intergenic | 30.0% | |
| AAATTCAAGGAAATCGGAAA+CGG | - | chr7.3:66626460-66626479 | MS.gene71547:CDS | 30.0% | |
| AATAAGCAGTTTATCCAAAC+AGG | - | chr7.3:66627190-66627209 | MS.gene71547:intron | 30.0% | |
| ATAAGTCTGAGGAACATATT+TGG | - | chr7.3:66626773-66626792 | MS.gene71547:intron | 30.0% | |
| CAAATTGTACATACGATTGA+AGG | + | chr7.3:66627742-66627761 | None:intergenic | 30.0% | |
| CAACAGTAAAAAATGTCGTT+TGG | - | chr7.3:66626543-66626562 | MS.gene71547:CDS | 30.0% | |
| CATAAAAATATAGGCCTGTT+TGG | + | chr7.3:66627207-66627226 | None:intergenic | 30.0% | |
| CGAAAACATAAAAGGGTAAA+AGG | + | chr7.3:66626653-66626672 | None:intergenic | 30.0% | |
| TCATAAGGTTAATAAGTCTG+AGG | - | chr7.3:66626762-66626781 | MS.gene71547:intron | 30.0% | |
| TCCATCAACTAATACTAGTA+GGG | + | chr7.3:66627894-66627913 | None:intergenic | 30.0% | |
| TGCAGAGAATGAAAATTCAT+TGG | - | chr7.3:66628075-66628094 | MS.gene71547:CDS | 30.0% | |
| TTAAATGAAATGACAAGCCT+CGG | - | chr7.3:66627865-66627884 | MS.gene71547:intron | 30.0% | |
| TTTCCGATTTCCTTGAATTT+CGG | + | chr7.3:66626460-66626479 | None:intergenic | 30.0% | |
| ! | ATATTTGGAAGCATATGACT+GGG | - | chr7.3:66626788-66626807 | MS.gene71547:intron | 30.0% |
| !! | AAGTTGATATGTAAGTTGAC+TGG | - | chr7.3:66626739-66626758 | MS.gene71547:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr7.3:66626979-66626998 | MS.gene71547:intron | 30.0% |
| !!! | CAAACGACATTTTTTACTGT+TGG | + | chr7.3:66626545-66626564 | None:intergenic | 30.0% |
| AAAGAAGGAAGCAACCTATT+AGG | - | chr7.3:66626430-66626449 | MS.gene71547:CDS | 35.0% | |
| AGTTAGGAAGTCTTCTAATG+AGG | - | chr7.3:66628332-66628351 | MS.gene71547:CDS | 35.0% | |
| ATAAGCTCTCCAATTTAGCT+TGG | - | chr7.3:66627054-66627073 | MS.gene71547:intron | 35.0% | |
| ATTAGGTTCACCGAAATTCA+AGG | - | chr7.3:66626447-66626466 | MS.gene71547:CDS | 35.0% | |
| GAGAATGTTAAGCAGAAAGA+AGG | - | chr7.3:66626415-66626434 | MS.gene71547:CDS | 35.0% | |
| GTCCATCAACTAATACTAGT+AGG | + | chr7.3:66627895-66627914 | None:intergenic | 35.0% | |
| TATATGTGTCTATGTCGTGT+CGG | - | chr7.3:66627666-66627685 | MS.gene71547:intron | 35.0% | |
| TCACCGAAATTCAAGGAAAT+CGG | - | chr7.3:66626454-66626473 | MS.gene71547:CDS | 35.0% | |
| TCCCTACTAGTATTAGTTGA+TGG | - | chr7.3:66627890-66627909 | MS.gene71547:intron | 35.0% | |
| TGAATTTCGGTGAACCTAAT+AGG | + | chr7.3:66626447-66626466 | None:intergenic | 35.0% | |
| TTAATCAAGATCCTCTTTGC+CGG | - | chr7.3:66626614-66626633 | MS.gene71547:CDS | 35.0% | |
| ! | ATGTAAGTTGACTGGTCATA+AGG | - | chr7.3:66626747-66626766 | MS.gene71547:intron | 35.0% |
| ! | CATATTTGGAAGCATATGAC+TGG | - | chr7.3:66626787-66626806 | MS.gene71547:intron | 35.0% |
| ! | TTGGATGCTTTAGATATCCA+TGG | - | chr7.3:66627426-66627445 | MS.gene71547:intron | 35.0% |
| !! | GTAAGTTTTGTGAGACTGTT+TGG | - | chr7.3:66626978-66626997 | MS.gene71547:intron | 35.0% |
| !!! | GCTGTTTTTCCAAGCTAAAT+TGG | + | chr7.3:66627066-66627085 | None:intergenic | 35.0% |
| ATCGATGGTGTTCAGATTCA+GGG | - | chr7.3:66628427-66628446 | MS.gene71547:CDS | 40.0% | |
| CAGGAAGAAGGAATGGAAAA+TGG | - | chr7.3:66628174-66628193 | MS.gene71547:intron | 40.0% | |
| CTCTAACGTCTACATAAGAC+CGG | + | chr7.3:66628038-66628057 | None:intergenic | 40.0% | |
| GGTTTCATAAACAGAGCAAC+AGG | - | chr7.3:66628155-66628174 | MS.gene71547:intron | 40.0% | |
| GTTGTAGGATTAGAGCAATG+TGG | - | chr7.3:66626896-66626915 | MS.gene71547:intron | 40.0% | |
| TAAACAGAGCAACAGGAAGA+AGG | - | chr7.3:66628162-66628181 | MS.gene71547:intron | 40.0% | |
| TAATACTAGTAGGGAAACCG+AGG | + | chr7.3:66627885-66627904 | None:intergenic | 40.0% | |
| TATCCCAACCGAATAGAACT+GGG | + | chr7.3:66627917-66627936 | None:intergenic | 40.0% | |
| TCCTCCAGATGGTAACAAAT+GGG | + | chr7.3:66627798-66627817 | None:intergenic | 40.0% | |
| TTATCCCAACCGAATAGAAC+TGG | + | chr7.3:66627918-66627937 | None:intergenic | 40.0% | |
| ! | GGAGTAAAAGGGTATGTCTT+TGG | + | chr7.3:66626524-66626543 | None:intergenic | 40.0% |
| ! | TTGATGGACCCAGTTCTATT+CGG | - | chr7.3:66627906-66627925 | MS.gene71547:intron | 40.0% |
| !! | ATCGCGAACAAGTTGGTTAT+TGG | - | chr7.3:66626695-66626714 | MS.gene71547:CDS | 40.0% |
| !! | CATAATTTTGGTCCTCCAGA+TGG | + | chr7.3:66627809-66627828 | None:intergenic | 40.0% |
| AAACCTACGAAGCACGGATA+CGG | - | chr7.3:66627556-66627575 | MS.gene71547:intron | 45.0% | |
| AGACAGAAGAGGAAGACTTC+TGG | - | chr7.3:66628361-66628380 | MS.gene71547:CDS | 45.0% | |
| AGAGCAACAGGAAGAAGGAA+TGG | - | chr7.3:66628167-66628186 | MS.gene71547:intron | 45.0% | |
| AGGTTGTCAGCTATGAAGCA+CGG | + | chr7.3:66627722-66627741 | None:intergenic | 45.0% | |
| CGAAGAAATTACCGGCAAAG+AGG | + | chr7.3:66626628-66626647 | None:intergenic | 45.0% | |
| CGATTCAAATGCGTAGAGAC+AGG | - | chr7.3:66626484-66626503 | MS.gene71547:CDS | 45.0% | |
| GACTGAAAACCTACGAAGCA+CGG | - | chr7.3:66627550-66627569 | MS.gene71547:intron | 45.0% | |
| GATCGATGGTGTTCAGATTC+AGG | - | chr7.3:66628426-66628445 | MS.gene71547:CDS | 45.0% | |
| GCTGAAGAAGGGGATGTAAT+TGG | - | chr7.3:66628474-66628493 | MS.gene71547:CDS | 45.0% | |
| GTCCTCCAGATGGTAACAAA+TGG | + | chr7.3:66627799-66627818 | None:intergenic | 45.0% | |
| TCTCTGCAATCATGCAGTTG+TGG | + | chr7.3:66628063-66628082 | None:intergenic | 45.0% | |
| TGAGGAAAGTGAGACAGAAG+AGG | - | chr7.3:66628350-66628369 | MS.gene71547:CDS | 45.0% | |
| ! | TAACCAACTTGTTCGCGATG+CGG | + | chr7.3:66626694-66626713 | None:intergenic | 45.0% |
| ! | TGTGCCCATTTGTTACCATC+TGG | - | chr7.3:66627791-66627810 | MS.gene71547:intron | 45.0% |
| ! | TTCCGGTTCTGACTCTGAAT+CGG | + | chr7.3:66628454-66628473 | None:intergenic | 45.0% |
| AAACCGCATCGCGAACAAGT+TGG | - | chr7.3:66626688-66626707 | MS.gene71547:CDS | 50.0% | |
| AACACCTGCTCACACAGTCA+AGG | - | chr7.3:66627937-66627956 | MS.gene71547:intron | 50.0% | |
| ACACCTGCTCACACAGTCAA+GGG | - | chr7.3:66627938-66627957 | MS.gene71547:intron | 50.0% | |
| ACATCCCCTTCTTCAGCTTC+CGG | + | chr7.3:66628471-66628490 | None:intergenic | 50.0% | |
| ACGGACACAAACACTGGACA+CGG | - | chr7.3:66627575-66627594 | MS.gene71547:intron | 50.0% | |
| ACGGATACGGACACAAACAC+TGG | - | chr7.3:66627569-66627588 | MS.gene71547:intron | 50.0% | |
| AGAACCGGAAGCTGAAGAAG+GGG | - | chr7.3:66628464-66628483 | MS.gene71547:CDS | 50.0% | |
| AGTCAAGGGATCTCGACTGT+TGG | - | chr7.3:66627952-66627971 | MS.gene71547:intron | 50.0% | |
| CAGAACCGGAAGCTGAAGAA+GGG | - | chr7.3:66628463-66628482 | MS.gene71547:CDS | 50.0% | |
| GGACCCAGTTCTATTCGGTT+GGG | - | chr7.3:66627911-66627930 | MS.gene71547:intron | 50.0% | |
| GGTTGTCAGCTATGAAGCAC+GGG | + | chr7.3:66627721-66627740 | None:intergenic | 50.0% | |
| GTCCGATTCAGAGTCAGAAC+CGG | - | chr7.3:66628449-66628468 | MS.gene71547:CDS | 50.0% | |
| TCAGAACCGGAAGCTGAAGA+AGG | - | chr7.3:66628462-66628481 | MS.gene71547:CDS | 50.0% | |
| TGGACCCAGTTCTATTCGGT+TGG | - | chr7.3:66627910-66627929 | MS.gene71547:intron | 50.0% | |
| ! | AACTTGTTCGCGATGCGGTT+TGG | + | chr7.3:66626689-66626708 | None:intergenic | 50.0% |
| ! | GCCCATTTGTTACCATCTGG+AGG | - | chr7.3:66627794-66627813 | MS.gene71547:intron | 50.0% |
| ! | TGTCTATGTCGTGTCGGTGT+CGG | - | chr7.3:66627672-66627691 | MS.gene71547:intron | 50.0% |
| !! | GGGTCTCATCGATTTCGCTT+TGG | - | chr7.3:66626564-66626583 | MS.gene71547:CDS | 50.0% |
| CACAAACACTGGACACGGCA+CGG | - | chr7.3:66627580-66627599 | MS.gene71547:intron | 55.0% | |
| GAACGCTGGGACAACGATGA+CGG | - | chr7.3:66628399-66628418 | MS.gene71547:CDS | 55.0% | |
| GATCCCTTGACTGTGTGAGC+AGG | + | chr7.3:66627944-66627963 | None:intergenic | 55.0% | |
| TATGAAGCACGGGCACTCCT+AGG | + | chr7.3:66627711-66627730 | None:intergenic | 55.0% | |
| TGTCCGTATCCGTGCTTCGT+AGG | + | chr7.3:66627562-66627581 | None:intergenic | 55.0% | |
| ! | GTTCGCGATGCGGTTTGGAT+CGG | + | chr7.3:66626684-66626703 | None:intergenic | 55.0% |
| !! | ACGATGACGGAGGAGATCGA+TGG | - | chr7.3:66628412-66628431 | MS.gene71547:CDS | 55.0% |
| GACTTCTGGATGCCTCCTGC+TGG | - | chr7.3:66628375-66628394 | MS.gene71547:CDS | 60.0% | |
| TCGGACACGCGGCTAATCCT+AGG | - | chr7.3:66627691-66627710 | MS.gene71547:intron | 60.0% | |
| TTGTCCCAGCGTTCTCCAGC+AGG | + | chr7.3:66628393-66628412 | None:intergenic | 60.0% | |
| GCCTCCTGCTGGAGAACGCT+GGG | - | chr7.3:66628386-66628405 | MS.gene71547:CDS | 65.0% | |
| TCCCAGCGTTCTCCAGCAGG+AGG | + | chr7.3:66628390-66628409 | None:intergenic | 65.0% | |
| TGCCTCCTGCTGGAGAACGC+TGG | - | chr7.3:66628385-66628404 | MS.gene71547:CDS | 65.0% | |
| ! | CGCTGGGACAACGATGACGG+AGG | - | chr7.3:66628402-66628421 | MS.gene71547:CDS | 65.0% |
| !! | TCGTGTCGGTGTCGGACACG+CGG | - | chr7.3:66627680-66627699 | MS.gene71547:intron | 65.0% |
| GGCGGTGGAGGTGGCGACGA+CGG | - | chr7.3:66626390-66626409 | MS.gene71547:CDS | 75.0% | |
| GGTGGAGGTGGCGACGACGG+AGG | - | chr7.3:66626393-66626412 | MS.gene71547:CDS | 75.0% | |
| ! | GACGACGGCGGCGGTGGAGG+TGG | - | chr7.3:66626381-66626400 | MS.gene71547:CDS | 80.0% |
| ! | GGAGACGACGGCGGCGGTGG+AGG | - | chr7.3:66626378-66626397 | MS.gene71547:CDS | 80.0% |
| ! | GGCGGAGACGACGGCGGCGG+TGG | - | chr7.3:66626375-66626394 | MS.gene71547:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 66626373 | 66628527 | 66626373 | ID=MS.gene71547 |
| chr7.3 | mRNA | 66626373 | 66628527 | 66626373 | ID=MS.gene71547.t1;Parent=MS.gene71547 |
| chr7.3 | exon | 66628265 | 66628527 | 66628265 | ID=MS.gene71547.t1.exon1;Parent=MS.gene71547.t1 |
| chr7.3 | CDS | 66628265 | 66628527 | 66628265 | ID=cds.MS.gene71547.t1;Parent=MS.gene71547.t1 |
| chr7.3 | exon | 66628068 | 66628165 | 66628068 | ID=MS.gene71547.t1.exon2;Parent=MS.gene71547.t1 |
| chr7.3 | CDS | 66628068 | 66628165 | 66628068 | ID=cds.MS.gene71547.t1;Parent=MS.gene71547.t1 |
| chr7.3 | exon | 66626373 | 66626731 | 66626373 | ID=MS.gene71547.t1.exon3;Parent=MS.gene71547.t1 |
| chr7.3 | CDS | 66626373 | 66626731 | 66626373 | ID=cds.MS.gene71547.t1;Parent=MS.gene71547.t1 |
| Gene Sequence |
| Protein sequence |
