AlfalfaGEDB | MS.gene44260

M. sativa cultivar XinJiangDaYe / MS.gene44260

KEGG: K09578
GO: GO:0003674 GO:0003755 GO:0003824 GO:0016853 GO:0016859 GO:0140096
PFAM: PF00639.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44260.t1	XP_003629341.1	98.8	81	1	0	1	81	1	81	2.60E-35	157.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44260.t1	Q94G00	77.2	79	18	0	3	81	2	80	8.9e-29	127.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44260.t1	G7LCY6	98.8	81	1	0	1	81	1	81	1.8e-35	157.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049166	MS.gene44260	0.813782	2.15E-51	-1.69E-46
MS.gene049255	MS.gene44260	0.809558	1.78E-50	-1.69E-46
MS.gene049382	MS.gene44260	0.810386	1.18E-50	-1.69E-46
MS.gene049685	MS.gene44260	0.801098	1.06E-48	-1.69E-46
MS.gene049703	MS.gene44260	-0.800873	1.17E-48	-1.69E-46
MS.gene049756	MS.gene44260	0.837921	3.91E-57	-1.69E-46
MS.gene04984	MS.gene44260	0.8129	3.36E-51	-1.69E-46
MS.gene049887	MS.gene44260	0.821776	3.37E-53	-1.69E-46
MS.gene050084	MS.gene44260	0.804387	2.21E-49	-1.69E-46
MS.gene050085	MS.gene44260	0.832904	7.24E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44260.t1	MTR_8g076070	98.765	81	1	0	1	81	1	81	6.64e-54	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44260.t1	AT2G18040	73.973	73	19	0	9	81	6	78	2.76e-35	116

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Find 20 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCTTCATCTCGCGG+CGG	0.772656	8.1:-31385877	MS.gene44260:CDS
AATTTGAGGATCTTGCTTCG+AGG	0.550226	8.1:-31385693	MS.gene44260:CDS
AGAGGATATCCTTTCTGGTA+AGG	0.533949	8.1:-31385719	MS.gene44260:CDS
ATGAAAGAGGATATCCTTTC+TGG	0.182475	8.1:-31385724	MS.gene44260:CDS
CAAATTTGGCCTTACCAGAA+AGG	0.448271	8.1:+31385710	None:intergenic
CACATACTGATTAAACACGA+AGG	0.672969	8.1:-31385835	MS.gene44260:CDS
CATTGAAGTAAGAATAGCAA+CGG	0.597353	8.1:+31385744	None:intergenic
CGAAGCAAGATCCTCAAATT+TGG	0.289474	8.1:+31385696	None:intergenic
CTCGCGGCGGCGCTGAGGTT+AGG	0.301148	8.1:-31385864	MS.gene44260:CDS
GATTGTAGCTCTGCTAAACG+CGG	0.692633	8.1:-31385664	MS.gene44260:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CATTGAAGTAAGAATAGCAA+CGG	+	chr8.1:31385786-31385805	None:intergenic	30.0%
	ATGAAAGAGGATATCCTTTC+TGG	-	chr8.1:31385803-31385822	MS.gene44260:CDS	35.0%
	AATTTGAGGATCTTGCTTCG+AGG	-	chr8.1:31385834-31385853	MS.gene44260:CDS	40.0%
	CGAAGCAAGATCCTCAAATT+TGG	+	chr8.1:31385834-31385853	None:intergenic	40.0%
	TTCTGGTAAGGCCAAATTTG+AGG	-	chr8.1:31385820-31385839	MS.gene44260:CDS	40.0%
	GCTTCGTGGAAAGATCCAGA+AGG	-	chr8.1:31385728-31385747	MS.gene44260:CDS	50.0%
	TTCATCTCGCGGCGGCGCTG+AGG	-	chr8.1:31385658-31385677	MS.gene44260:CDS	70.0%
!	TATTCTTACTTCAATGAAAG+AGG	-	chr8.1:31385790-31385809	MS.gene44260:CDS	25.0%
!	CACATACTGATTAAACACGA+AGG	-	chr8.1:31385692-31385711	MS.gene44260:CDS	35.0%
!	AGAGGATATCCTTTCTGGTA+AGG	-	chr8.1:31385808-31385827	MS.gene44260:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	31385653	31385896	31385653	ID=MS.gene44260
chr8.1	mRNA	31385653	31385896	31385653	ID=MS.gene44260.t1;Parent=MS.gene44260
chr8.1	exon	31385653	31385896	31385653	ID=MS.gene44260.t1.exon1;Parent=MS.gene44260.t1
chr8.1	CDS	31385653	31385896	31385653	ID=cds.MS.gene44260.t1;Parent=MS.gene44260.t1

Gene Sequence	>MS.gene44260 ATGTCTTCATCTCGCGGCGGCGCTGAGGTTAGGGCTTCACACATACTGATTAAACACGAAGGTTCTAGAAGAAAAGCTTCGTGGAAAGATCCAGAAGGTTACGTCATCAAGAACACTACTCGTGAAAGTGCCGTTGCTATTCTTACTTCAATGAAAGAGGATATCCTTTCTGGTAAGGCCAAATTTGAGGATCTTGCTTCGAGGTATTCTGATTGTAGCTCTGCTAAACGCGGTGGCGATCTTG
Protein sequence	>MS.gene44260.t1 MSSSRGGAEVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILSGKAKFEDLASRYSDCSSAKRGGDL