Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93654.t1 | RHN46385.1 | 84.6 | 383 | 45 | 3 | 1 | 374 | 378 | 755 | 5.00E-158 | 567.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93654.t1 | Q41008 | 43.0 | 516 | 134 | 10 | 1 | 374 | 378 | 875 | 1.9e-81 | 304.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93654.t1 | A0A396H5E3 | 84.6 | 383 | 45 | 3 | 1 | 374 | 378 | 755 | 3.6e-158 | 567.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene93654 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene93654 | 0.813008 | 3.18E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene93654 | 0.859373 | 4.33E-63 | -1.69E-46 |
| MS.gene049435 | MS.gene93654 | 0.848896 | 4.58E-60 | -1.69E-46 |
| MS.gene049501 | MS.gene93654 | 0.820921 | 5.31E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene93654 | 0.81084 | 9.44E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene93654 | 0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene93654 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene93654 | 0.846531 | 2.05E-59 | -1.69E-46 |
| MS.gene050657 | MS.gene93654 | 0.815631 | 8.38E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene93654 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene050724 | MS.gene93654 | 0.804814 | 1.80E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene93654 | 0.807841 | 4.15E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene93654 | 0.828163 | 1.05E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene93654 | 0.842681 | 2.23E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene93654 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene93654 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene93654 | 0.821408 | 4.10E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene93654 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene93654 | 0.860082 | 2.65E-63 | -1.69E-46 |
| MS.gene051247 | MS.gene93654 | 0.816428 | 5.56E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene93654 | 0.820055 | 8.39E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene93654 | 0.820036 | 8.48E-53 | -1.69E-46 |
| MS.gene051388 | MS.gene93654 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene93654 | 0.814673 | 1.37E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene93654 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene93654 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene93654 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene052037 | MS.gene93654 | 0.810688 | 1.02E-50 | -1.69E-46 |
| MS.gene052056 | MS.gene93654 | -0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene93654 | 0.806581 | 7.68E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene93654 | 0.823949 | 1.05E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene93654 | 0.80246 | 5.55E-49 | -1.69E-46 |
| MS.gene052488 | MS.gene93654 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene93654 | 0.803606 | 3.22E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene93654 | 0.811153 | 8.07E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene93654 | 0.822123 | 2.80E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene93654 | 0.859291 | 4.58E-63 | -1.69E-46 |
| MS.gene052773 | MS.gene93654 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene053054 | MS.gene93654 | -0.825606 | 4.28E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene93654 | 0.819226 | 1.30E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene93654 | 0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene053201 | MS.gene93654 | 0.830729 | 2.49E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene93654 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene93654 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene93654 | 0.834745 | 2.51E-56 | -1.69E-46 |
| MS.gene053621 | MS.gene93654 | 0.821155 | 4.69E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene93654 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene93654 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene93654 | 0.800533 | 1.38E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene93654 | -0.822745 | 2.01E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene93654 | 0.834771 | 2.47E-56 | -1.69E-46 |
| MS.gene054468 | MS.gene93654 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene054559 | MS.gene93654 | 0.811499 | 6.79E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene93654 | 0.819376 | 1.20E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene93654 | 0.804929 | 1.71E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene93654 | 0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene93654 | 0.813123 | 3.00E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene93654 | 0.815593 | 8.54E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene93654 | 0.815975 | 7.02E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene93654 | 0.819838 | 9.41E-53 | -1.69E-46 |
| MS.gene055357 | MS.gene93654 | 0.860954 | 1.44E-63 | -1.69E-46 |
| MS.gene055466 | MS.gene93654 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene055641 | MS.gene93654 | 0.814318 | 1.64E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene93654 | 0.835243 | 1.88E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene93654 | 0.835401 | 1.71E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene93654 | 0.829959 | 3.84E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene93654 | 0.829155 | 6.03E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene93654 | 0.802716 | 4.92E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene93654 | 0.812809 | 3.52E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene93654 | 0.845018 | 5.28E-59 | -1.69E-46 |
| MS.gene056506 | MS.gene93654 | 0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene93654 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene93654 | 0.811154 | 8.07E-51 | -1.69E-46 |
| MS.gene056643 | MS.gene93654 | 0.818796 | 1.63E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene93654 | 0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene057200 | MS.gene93654 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene93654 | 0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene057414 | MS.gene93654 | 0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene93654 | 0.84853 | 5.78E-60 | -1.69E-46 |
| MS.gene057469 | MS.gene93654 | 0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene93654 | 0.82971 | 4.42E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene93654 | 0.818873 | 1.56E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene93654 | 0.814067 | 1.86E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene93654 | 0.83698 | 6.81E-57 | -1.69E-46 |
| MS.gene058829 | MS.gene93654 | 0.808029 | 3.79E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene93654 | 0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene058982 | MS.gene93654 | 0.803376 | 3.59E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene93654 | 0.834985 | 2.18E-56 | -1.69E-46 |
| MS.gene059584 | MS.gene93654 | 0.817763 | 2.79E-52 | -1.69E-46 |
| MS.gene059601 | MS.gene93654 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene059602 | MS.gene93654 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene93654 | 0.802606 | 5.18E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene93654 | 0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene93654 | 0.810397 | 1.18E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene93654 | -0.838046 | 3.63E-57 | -1.69E-46 |
| MS.gene060322 | MS.gene93654 | 0.827782 | 1.29E-54 | -1.69E-46 |
| MS.gene060480 | MS.gene93654 | 0.847159 | 1.38E-59 | -1.69E-46 |
| MS.gene06052 | MS.gene93654 | 0.839272 | 1.75E-57 | -1.69E-46 |
| MS.gene060587 | MS.gene93654 | 0.808085 | 3.68E-50 | -1.69E-46 |
| MS.gene060604 | MS.gene93654 | 0.800962 | 1.13E-48 | -1.69E-46 |
| MS.gene060634 | MS.gene93654 | -0.827657 | 1.39E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene93654 | 0.813753 | 2.18E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93654.t1 | MTR_7g066870 | 58.628 | 452 | 97 | 10 | 1 | 374 | 421 | 860 | 1.08e-140 | 421 |
| MS.gene93654.t1 | MTR_7g066870 | 59.600 | 250 | 58 | 3 | 1 | 249 | 378 | 585 | 2.83e-68 | 225 |
| MS.gene93654.t1 | MTR_7g066870 | 83.582 | 67 | 11 | 0 | 41 | 107 | 520 | 586 | 3.61e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93654.t1 | AT2G38040 | 42.297 | 357 | 178 | 8 | 1 | 342 | 383 | 726 | 9.43e-70 | 233 |
| MS.gene93654.t1 | AT2G38040 | 42.297 | 357 | 178 | 8 | 1 | 342 | 383 | 726 | 9.43e-70 | 233 |
Find 64 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTCTTTGATTCCGAATT+TGG | 0.097093 | 7.1:-34794013 | None:intergenic |
| ACTAAACAAGGATGTGAAAA+AGG | 0.281837 | 7.1:+34793904 | MS.gene93654:CDS |
| CGCATCCTCAGCAAGCGATT+TGG | 0.311917 | 7.1:+34793736 | MS.gene93654:CDS |
| CCCTTCAGCAATGGATCAAT+AGG | 0.337322 | 7.1:-34793470 | None:intergenic |
| CCCCAGAGGTTTCAGACATC+AGG | 0.360996 | 7.1:-34794117 | None:intergenic |
| AAAGAAACTGGAAGAGAAAC+TGG | 0.369228 | 7.1:+34793340 | MS.gene93654:CDS |
| TTCTTCAGCTTGTTAGCATT+AGG | 0.371644 | 7.1:-34793542 | None:intergenic |
| ATTTGGTGTCCCTCCAGCTT+TGG | 0.385342 | 7.1:-34793996 | None:intergenic |
| GAAAATCAATGAGTTCAATA+AGG | 0.405814 | 7.1:+34793775 | MS.gene93654:CDS |
| AGATGAGGCGATAAAGAAAC+TGG | 0.418414 | 7.1:+34793328 | MS.gene93654:CDS |
| AGCTGGAGGGACACCAAATT+CGG | 0.428121 | 7.1:+34794000 | MS.gene93654:CDS |
| GTCAGTGGCCGCTAAAGCCT+TGG | 0.432082 | 7.1:+34793385 | MS.gene93654:CDS |
| CCTCCTTGTTTCTGTCTGAC+AGG | 0.436937 | 7.1:-34793607 | None:intergenic |
| AAAGTGGAGGTCGCCAAAGC+TGG | 0.442807 | 7.1:+34793983 | MS.gene93654:CDS |
| GCCTCATCTAAATCGAGTTT+CGG | 0.448664 | 7.1:-34793314 | None:intergenic |
| TCAGTGGCCGCTAAAGCCTT+GGG | 0.450053 | 7.1:+34793386 | MS.gene93654:CDS |
| ACCTGATGTCTGAAACCTCT+GGG | 0.457541 | 7.1:+34794116 | MS.gene93654:CDS |
| AACTCGTTGCCATCTCGTCC+TGG | 0.464998 | 7.1:-34793860 | None:intergenic |
| GTTGAACTCACATTAAGAAA+AGG | 0.472332 | 7.1:-34794209 | None:intergenic |
| AACCTGATGTCTGAAACCTC+TGG | 0.484029 | 7.1:+34794115 | MS.gene93654:CDS |
| AATGATGGAGCAATTGAAAG+TGG | 0.495125 | 7.1:+34793967 | MS.gene93654:CDS |
| GGAAGTTTGAAAGTAGGAAA+TGG | 0.497527 | 7.1:+34794142 | MS.gene93654:CDS |
| CAGAGCCTTGCAGAGGCCGT+AGG | 0.500417 | 7.1:+34794064 | MS.gene93654:CDS |
| GCTAATGTTGTGAAGTCGGT+CGG | 0.507927 | 7.1:+34793815 | MS.gene93654:CDS |
| TTGTTTAGTTCTTCTATCTG+AGG | 0.510370 | 7.1:-34793890 | None:intergenic |
| TGTTAAGCCCAAGGCTTTAG+CGG | 0.511334 | 7.1:-34793393 | None:intergenic |
| ACCTATTGATCCATTGCTGA+AGG | 0.534858 | 7.1:+34793469 | MS.gene93654:CDS |
| AACAGATATTAAGAGAATGA+TGG | 0.535873 | 7.1:+34793952 | MS.gene93654:CDS |
| TCTATCTTACCCTTCAGCAA+TGG | 0.536921 | 7.1:-34793479 | None:intergenic |
| CTAATGTTGTGAAGTCGGTC+GGG | 0.541128 | 7.1:+34793816 | MS.gene93654:CDS |
| CAAACTTTCTGTTAAGCCCA+AGG | 0.551454 | 7.1:-34793402 | None:intergenic |
| ATGTCTGAAACCTCTGGGGA+TGG | 0.551656 | 7.1:+34794121 | MS.gene93654:CDS |
| ACTGGAAGAGAAACTGGAAA+AGG | 0.562500 | 7.1:+34793346 | MS.gene93654:CDS |
| GGGGATGGAAGTTTGAAAGT+AGG | 0.564045 | 7.1:+34794136 | MS.gene93654:CDS |
| TTTCTCTCTCAACTCGTCAT+CGG | 0.564143 | 7.1:-34794170 | None:intergenic |
| CTGAGGATGCGCTAACACGC+TGG | 0.568228 | 7.1:-34793724 | None:intergenic |
| CAGTTGCTGCGTAAGTGTTG+TGG | 0.571821 | 7.1:-34793630 | None:intergenic |
| GTGGAGGTCGCCAAAGCTGG+AGG | 0.581724 | 7.1:+34793986 | MS.gene93654:CDS |
| TTAGTAAAACCAGGACGAGA+TGG | 0.587670 | 7.1:+34793851 | MS.gene93654:CDS |
| TCAGCAATGGATCAATAGGT+TGG | 0.591042 | 7.1:-34793466 | None:intergenic |
| GACGAGTTGAGAGAGAAAGT+TGG | 0.597575 | 7.1:+34794175 | MS.gene93654:CDS |
| TTTCAAACTAGAAGAGCCTA+CGG | 0.606963 | 7.1:-34794080 | None:intergenic |
| AAAATCGGTGGGTTCAAGGA+AGG | 0.607904 | 7.1:+34793158 | MS.gene93654:CDS |
| ATCATCCAAATCGCTTGCTG+AGG | 0.612600 | 7.1:-34793741 | None:intergenic |
| CCTATTGATCCATTGCTGAA+GGG | 0.615117 | 7.1:+34793470 | MS.gene93654:CDS |
| AACAAGCTGAAGAAGAAGCA+TGG | 0.618458 | 7.1:+34793551 | MS.gene93654:CDS |
| TGGAGGTCGCCAAAGCTGGA+GGG | 0.627204 | 7.1:+34793987 | MS.gene93654:CDS |
| GATGGCTAATGTTGTGAAGT+CGG | 0.628322 | 7.1:+34793811 | MS.gene93654:CDS |
| GATGTTCAGTTAGTAAAACC+AGG | 0.630796 | 7.1:+34793842 | MS.gene93654:CDS |
| AATCAATGAGTTCAATAAGG+AGG | 0.631088 | 7.1:+34793778 | MS.gene93654:CDS |
| AAGAGCCTACGGCCTCTGCA+AGG | 0.633658 | 7.1:-34794069 | None:intergenic |
| GGAAGAGAAACTGGAAAAGG+AGG | 0.638755 | 7.1:+34793349 | MS.gene93654:CDS |
| TCTCCTGTCAGACAGAAACA+AGG | 0.645421 | 7.1:+34793604 | MS.gene93654:CDS |
| TCATCTAAATCGAGTTTCGG+AGG | 0.646059 | 7.1:-34793311 | None:intergenic |
| TCCGAAACTCGATTTAGATG+AGG | 0.652577 | 7.1:+34793313 | MS.gene93654:CDS |
| GAGTTTCGGAGGCTCAGAAG+AGG | 0.652851 | 7.1:-34793300 | None:intergenic |
| TAAGGAGGTAGACTTGCAGA+TGG | 0.656254 | 7.1:+34793793 | MS.gene93654:CDS |
| AATAAAGCAGAGCCTTGCAG+AGG | 0.662404 | 7.1:+34794057 | MS.gene93654:CDS |
| TCAGATAGAAGAACTAAACA+AGG | 0.670049 | 7.1:+34793892 | MS.gene93654:CDS |
| TTTCAAACTTCCATCCCCAG+AGG | 0.689826 | 7.1:-34794131 | None:intergenic |
| GGTTGATCAAGAATTGTCAG+TGG | 0.698128 | 7.1:+34793370 | MS.gene93654:CDS |
| GATGGAGCAATTGAAAGTGG+AGG | 0.703918 | 7.1:+34793970 | MS.gene93654:CDS |
| CCTGATGTCTGAAACCTCTG+GGG | 0.731070 | 7.1:+34794117 | MS.gene93654:CDS |
| CCTGTCAGACAGAAACAAGG+AGG | 0.745350 | 7.1:+34793607 | MS.gene93654:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATTTATATCAAACTT+TGG | + | chr7.1:34793062-34793081 | MS.gene93654:intron | 15.0% |
| !! | TAGAATAAAGAAAAACTATG+AGG | + | chr7.1:34793685-34793704 | MS.gene93654:CDS | 20.0% |
| !!! | TCATAGTTTTTCTTTATTCT+AGG | - | chr7.1:34793686-34793705 | None:intergenic | 20.0% |
| !!! | TTCATGTTTCTTTTTTTCTT+GGG | - | chr7.1:34793197-34793216 | None:intergenic | 20.0% |
| ! | AAAAAAGAAACATGAAGAAG+AGG | + | chr7.1:34793201-34793220 | MS.gene93654:CDS | 25.0% |
| ! | AAAAAGAAACATGAAGAAGA+GGG | + | chr7.1:34793202-34793221 | MS.gene93654:CDS | 25.0% |
| ! | AACAGATATTAAGAGAATGA+TGG | + | chr7.1:34793952-34793971 | MS.gene93654:CDS | 25.0% |
| ! | GAAAATCAATGAGTTCAATA+AGG | + | chr7.1:34793775-34793794 | MS.gene93654:CDS | 25.0% |
| !! | GAAAAAGGAAATTGAAGTTT+TGG | + | chr7.1:34793919-34793938 | MS.gene93654:CDS | 25.0% |
| !!! | CTTCATGTTTCTTTTTTTCT+TGG | - | chr7.1:34793198-34793217 | None:intergenic | 25.0% |
| AATCAATGAGTTCAATAAGG+AGG | + | chr7.1:34793778-34793797 | MS.gene93654:CDS | 30.0% | |
| ACTAAACAAGGATGTGAAAA+AGG | + | chr7.1:34793904-34793923 | MS.gene93654:CDS | 30.0% | |
| ATGCATAAGTTCCGAAAAAT+CGG | + | chr7.1:34793143-34793162 | MS.gene93654:CDS | 30.0% | |
| CTATTCTTTGATTCCGAATT+TGG | - | chr7.1:34794016-34794035 | None:intergenic | 30.0% | |
| GGGTAAGATAGAAAAACTAA+AGG | + | chr7.1:34793490-34793509 | MS.gene93654:CDS | 30.0% | |
| TCAGATAGAAGAACTAAACA+AGG | + | chr7.1:34793892-34793911 | MS.gene93654:CDS | 30.0% | |
| ! | TCAGAATCAGAAATTTTCTC+AGG | - | chr7.1:34793236-34793255 | None:intergenic | 30.0% |
| !! | TAAAGGCAGATTTTAATCGA+AGG | + | chr7.1:34793507-34793526 | MS.gene93654:CDS | 30.0% |
| !! | TTGTTTAGTTCTTCTATCTG+AGG | - | chr7.1:34793893-34793912 | None:intergenic | 30.0% |
| AAAGAAACTGGAAGAGAAAC+TGG | + | chr7.1:34793340-34793359 | MS.gene93654:CDS | 35.0% | |
| ATAAGTTCCGAAAAATCGGT+GGG | + | chr7.1:34793147-34793166 | MS.gene93654:CDS | 35.0% | |
| GATGTTCAGTTAGTAAAACC+AGG | + | chr7.1:34793842-34793861 | MS.gene93654:CDS | 35.0% | |
| GGAAGTTTGAAAGTAGGAAA+TGG | + | chr7.1:34794142-34794161 | MS.gene93654:CDS | 35.0% | |
| TTTCAAACTAGAAGAGCCTA+CGG | - | chr7.1:34794083-34794102 | None:intergenic | 35.0% | |
| ! | AATGATGGAGCAATTGAAAG+TGG | + | chr7.1:34793967-34793986 | MS.gene93654:CDS | 35.0% |
| ! | AGAAAAACTATGAGGCGTTA+CGG | + | chr7.1:34793693-34793712 | MS.gene93654:CDS | 35.0% |
| ! | GAATCAGAAATTTTCTCAGG+AGG | - | chr7.1:34793233-34793252 | None:intergenic | 35.0% |
| !! | TTCTTCAGCTTGTTAGCATT+AGG | - | chr7.1:34793545-34793564 | None:intergenic | 35.0% |
| !!! | CTTTTTTTCTTGGGATCTAC+AGG | - | chr7.1:34793188-34793207 | None:intergenic | 35.0% |
| !!! | TATGCATGCGATGTTTTAAC+AGG | - | chr7.1:34793130-34793149 | None:intergenic | 35.0% |
| AACAAGCTGAAGAAGAAGCA+TGG | + | chr7.1:34793551-34793570 | MS.gene93654:CDS | 40.0% | |
| ACCTATTGATCCATTGCTGA+AGG | + | chr7.1:34793469-34793488 | MS.gene93654:CDS | 40.0% | |
| ACTGGAAGAGAAACTGGAAA+AGG | + | chr7.1:34793346-34793365 | MS.gene93654:CDS | 40.0% | |
| AGATGAGGCGATAAAGAAAC+TGG | + | chr7.1:34793328-34793347 | MS.gene93654:CDS | 40.0% | |
| CAAACTTTCTGTTAAGCCCA+AGG | - | chr7.1:34793405-34793424 | None:intergenic | 40.0% | |
| CATAAGTTCCGAAAAATCGG+TGG | + | chr7.1:34793146-34793165 | MS.gene93654:CDS | 40.0% | |
| CCTATTGATCCATTGCTGAA+GGG | + | chr7.1:34793470-34793489 | MS.gene93654:CDS | 40.0% | |
| GATGGCTAATGTTGTGAAGT+CGG | + | chr7.1:34793811-34793830 | MS.gene93654:CDS | 40.0% | |
| GCCTCATCTAAATCGAGTTT+CGG | - | chr7.1:34793317-34793336 | None:intergenic | 40.0% | |
| GGTTGATCAAGAATTGTCAG+TGG | + | chr7.1:34793370-34793389 | MS.gene93654:CDS | 40.0% | |
| TCAGCAATGGATCAATAGGT+TGG | - | chr7.1:34793469-34793488 | None:intergenic | 40.0% | |
| TCATCTAAATCGAGTTTCGG+AGG | - | chr7.1:34793314-34793333 | None:intergenic | 40.0% | |
| TCCGAAACTCGATTTAGATG+AGG | + | chr7.1:34793313-34793332 | MS.gene93654:CDS | 40.0% | |
| TCTATCTTACCCTTCAGCAA+TGG | - | chr7.1:34793482-34793501 | None:intergenic | 40.0% | |
| TGAGTTCCTACACAATGAAC+AGG | - | chr7.1:34793088-34793107 | None:intergenic | 40.0% | |
| TTAGTAAAACCAGGACGAGA+TGG | + | chr7.1:34793851-34793870 | MS.gene93654:CDS | 40.0% | |
| TTTCTCTCTCAACTCGTCAT+CGG | - | chr7.1:34794173-34794192 | None:intergenic | 40.0% | |
| AATAAAGCAGAGCCTTGCAG+AGG | + | chr7.1:34794057-34794076 | MS.gene93654:CDS | 45.0% | |
| CCCTTCAGCAATGGATCAAT+AGG | - | chr7.1:34793473-34793492 | None:intergenic | 45.0% | |
| CTAATGTTGTGAAGTCGGTC+GGG | + | chr7.1:34793816-34793835 | MS.gene93654:CDS | 45.0% | |
| CTTTGGCCTGTTCATTGTGT+AGG | + | chr7.1:34793079-34793098 | MS.gene93654:intron | 45.0% | |
| GATGGAGCAATTGAAAGTGG+AGG | + | chr7.1:34793970-34793989 | MS.gene93654:CDS | 45.0% | |
| GCTAATGTTGTGAAGTCGGT+CGG | + | chr7.1:34793815-34793834 | MS.gene93654:CDS | 45.0% | |
| GGAAGAGAAACTGGAAAAGG+AGG | + | chr7.1:34793349-34793368 | MS.gene93654:CDS | 45.0% | |
| GGGGATGGAAGTTTGAAAGT+AGG | + | chr7.1:34794136-34794155 | MS.gene93654:CDS | 45.0% | |
| TAAGGAGGTAGACTTGCAGA+TGG | + | chr7.1:34793793-34793812 | MS.gene93654:CDS | 45.0% | |
| TCTCCTGTCAGACAGAAACA+AGG | + | chr7.1:34793604-34793623 | MS.gene93654:CDS | 45.0% | |
| TTTCAAACTTCCATCCCCAG+AGG | - | chr7.1:34794134-34794153 | None:intergenic | 45.0% | |
| ! | AAAATCGGTGGGTTCAAGGA+AGG | + | chr7.1:34793158-34793177 | MS.gene93654:CDS | 45.0% |
| ! | AACCTGATGTCTGAAACCTC+TGG | + | chr7.1:34794115-34794134 | MS.gene93654:CDS | 45.0% |
| ! | ACCTGATGTCTGAAACCTCT+GGG | + | chr7.1:34794116-34794135 | MS.gene93654:CDS | 45.0% |
| ! | ACGAGATGGCAACGAGTTTT+TGG | + | chr7.1:34793865-34793884 | MS.gene93654:CDS | 45.0% |
| ! | ATCATCCAAATCGCTTGCTG+AGG | - | chr7.1:34793744-34793763 | None:intergenic | 45.0% |
| ! | GACGAGTTGAGAGAGAAAGT+TGG | + | chr7.1:34794175-34794194 | MS.gene93654:CDS | 45.0% |
| ! | TGTTAAGCCCAAGGCTTTAG+CGG | - | chr7.1:34793396-34793415 | None:intergenic | 45.0% |
| !!! | CCTTGAACCCACCGATTTTT+CGG | - | chr7.1:34793157-34793176 | None:intergenic | 45.0% |
| AGCTGGAGGGACACCAAATT+CGG | + | chr7.1:34794000-34794019 | MS.gene93654:CDS | 50.0% | |
| CCTGTCAGACAGAAACAAGG+AGG | + | chr7.1:34793607-34793626 | MS.gene93654:CDS | 50.0% | |
| ! | ATGTCTGAAACCTCTGGGGA+TGG | + | chr7.1:34794121-34794140 | MS.gene93654:CDS | 50.0% |
| ! | CAGTTGCTGCGTAAGTGTTG+TGG | - | chr7.1:34793633-34793652 | None:intergenic | 50.0% |
| ! | CCGAAAAATCGGTGGGTTCA+AGG | + | chr7.1:34793154-34793173 | MS.gene93654:CDS | 50.0% |
| ! | CCTGATGTCTGAAACCTCTG+GGG | + | chr7.1:34794117-34794136 | MS.gene93654:CDS | 50.0% |
| !! | ATTTGGTGTCCCTCCAGCTT+TGG | - | chr7.1:34793999-34794018 | None:intergenic | 50.0% |
| !! | CCTCCTTGTTTCTGTCTGAC+AGG | - | chr7.1:34793610-34793629 | None:intergenic | 50.0% |
| AAAGTGGAGGTCGCCAAAGC+TGG | + | chr7.1:34793983-34794002 | MS.gene93654:CDS | 55.0% | |
| AACTCGTTGCCATCTCGTCC+TGG | - | chr7.1:34793863-34793882 | None:intergenic | 55.0% | |
| CCCCAGAGGTTTCAGACATC+AGG | - | chr7.1:34794120-34794139 | None:intergenic | 55.0% | |
| CGCATCCTCAGCAAGCGATT+TGG | + | chr7.1:34793736-34793755 | MS.gene93654:CDS | 55.0% | |
| GAGTTTCGGAGGCTCAGAAG+AGG | - | chr7.1:34793303-34793322 | None:intergenic | 55.0% | |
| TCAGTGGCCGCTAAAGCCTT+GGG | + | chr7.1:34793386-34793405 | MS.gene93654:CDS | 55.0% | |
| AAGAGCCTACGGCCTCTGCA+AGG | - | chr7.1:34794072-34794091 | None:intergenic | 60.0% | |
| CTGAGGATGCGCTAACACGC+TGG | - | chr7.1:34793727-34793746 | None:intergenic | 60.0% | |
| GTCAGTGGCCGCTAAAGCCT+TGG | + | chr7.1:34793385-34793404 | MS.gene93654:CDS | 60.0% | |
| TGGAGGTCGCCAAAGCTGGA+GGG | + | chr7.1:34793987-34794006 | MS.gene93654:CDS | 60.0% | |
| CAGAGCCTTGCAGAGGCCGT+AGG | + | chr7.1:34794064-34794083 | MS.gene93654:CDS | 65.0% | |
| GTGGAGGTCGCCAAAGCTGG+AGG | + | chr7.1:34793986-34794005 | MS.gene93654:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 34793000 | 34794219 | 34793000 | ID=MS.gene93654 |
| chr7.1 | mRNA | 34793000 | 34794219 | 34793000 | ID=MS.gene93654.t1;Parent=MS.gene93654 |
| chr7.1 | exon | 34793000 | 34793005 | 34793000 | ID=MS.gene93654.t1.exon1;Parent=MS.gene93654.t1 |
| chr7.1 | CDS | 34793000 | 34793005 | 34793000 | ID=cds.MS.gene93654.t1;Parent=MS.gene93654.t1 |
| chr7.1 | exon | 34793101 | 34794219 | 34793101 | ID=MS.gene93654.t1.exon2;Parent=MS.gene93654.t1 |
| chr7.1 | CDS | 34793101 | 34794219 | 34793101 | ID=cds.MS.gene93654.t1;Parent=MS.gene93654.t1 |
| Gene Sequence |
| Protein sequence |
